Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602090 | XP_003606405.1 | 87.027 | 185 | 18 | 1 | 1 | 185 | 1 | 179 | 6.35e-106 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602090 | sp|Q9LN09|DPB31_ARATH | 48.000 | 100 | 51 | 1 | 77 | 176 | 99 | 197 | 1.18e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602090 | G7JPE7 | 87.027 | 185 | 18 | 1 | 1 | 185 | 1 | 179 | 3.03e-106 | 311 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0602090 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602090 | MtrunA17_Chr4g0029311 | 87.027 | 185 | 18 | 1 | 1 | 185 | 1 | 179 | 5.84e-110 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602090 | AT1G07980.1 | 48.000 | 100 | 51 | 1 | 77 | 176 | 99 | 197 | 1.20e-26 | 100 |
| Msa0602090 | AT1G07980.2 | 40.541 | 74 | 43 | 1 | 77 | 150 | 99 | 171 | 3.59e-14 | 67.4 |
Find 53 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACTTTCTTCCTGTTCTT+TGG | 0.144244 | 4_2:-45318724 | None:intergenic |
| TTCGTTCTTTATCTTCTCTT+TGG | 0.213367 | 4_2:-45318652 | None:intergenic |
| TGTTTCTCAGGAAGCTATTT+TGG | 0.232045 | 4_2:+45318857 | Msa0602090:CDS |
| TTCTTCCTGTTCTTTGGAAT+TGG | 0.238672 | 4_2:-45318718 | None:intergenic |
| TGTTTCCTATGAATCGAATT+AGG | 0.259220 | 4_2:+45318802 | Msa0602090:CDS |
| TCCTCGGCTTTCACTTTCTC+AGG | 0.351904 | 4_2:-45321301 | None:intergenic |
| ACAAACTCAAGAGGGAATAA+AGG | 0.360672 | 4_2:+45321337 | Msa0602090:CDS |
| TTTAAAGCTTCCATCTCATA+TGG | 0.365236 | 4_2:+45321505 | Msa0602090:three_prime_UTR |
| CAATTAGCAGAGGATGCTTA+TGG | 0.384570 | 4_2:+45319014 | Msa0602090:CDS |
| TAGCGATTTGCGTGTTTCTC+AGG | 0.418237 | 4_2:+45318845 | Msa0602090:CDS |
| TGCTTATGGTTGCTGTGCTC+AGG | 0.423476 | 4_2:+45319028 | Msa0602090:CDS |
| AAATCTGTCACATTCTGAAA+TGG | 0.428197 | 4_2:+45321413 | Msa0602090:three_prime_UTR |
| AAGAGGGAATAAAGGAGGTT+AGG | 0.433079 | 4_2:+45321345 | Msa0602090:CDS |
| AAACTCAGTGTAAGCTGAAA+GGG | 0.437263 | 4_2:+45318471 | Msa0602090:five_prime_UTR |
| TTTAACAAAAGAATAGGCTT+AGG | 0.448030 | 4_2:-45321393 | None:intergenic |
| GACAGATTTAACAAAAGAAT+AGG | 0.453918 | 4_2:-45321399 | None:intergenic |
| TTCTGCTATGGAGTTGTTTG+AGG | 0.460289 | 4_2:-45318547 | None:intergenic |
| CTTGTAGGTGTTGAGGTTTG+TGG | 0.466318 | 4_2:-45318594 | None:intergenic |
| AAATTCCAATTCCAAAGAAC+AGG | 0.466460 | 4_2:+45318713 | Msa0602090:CDS |
| GTGCAACGGTAAATACACTA+TGG | 0.467964 | 4_2:-45321477 | None:intergenic |
| TAGCTGAAGGTAAATTTCCC+AGG | 0.478482 | 4_2:+45321622 | Msa0602090:three_prime_UTR |
| TGTCTCTCTTAATGCATCCT+CGG | 0.488436 | 4_2:-45321317 | None:intergenic |
| CGGTGTTTCTGACACAATGA+AGG | 0.489095 | 4_2:-45318438 | None:intergenic |
| TCGAATTAGGACGATGTTGA+AGG | 0.492300 | 4_2:+45318815 | Msa0602090:CDS |
| ATCGTCCTAATTCGATTCAT+AGG | 0.501138 | 4_2:-45318807 | None:intergenic |
| AGAAGATATGACTTTCTGTC+TGG | 0.507187 | 4_2:+45321151 | Msa0602090:CDS |
| TTTGGAATTGGAATTTCCGT+TGG | 0.525440 | 4_2:-45318706 | None:intergenic |
| TAAACTCAGTGTAAGCTGAA+AGG | 0.541822 | 4_2:+45318470 | Msa0602090:five_prime_UTR |
| AGTTGCTAAATACTAACGAC+AGG | 0.543440 | 4_2:+45321667 | Msa0602090:three_prime_UTR |
| TCCAAAGAACAGGAAGAAAG+TGG | 0.544342 | 4_2:+45318723 | Msa0602090:CDS |
| CACTGAGTTTACTACTCTCA+CGG | 0.545080 | 4_2:-45318458 | None:intergenic |
| GGAAATGTAAAACAAAATAG+TGG | 0.550060 | 4_2:+45321366 | Msa0602090:exon |
| ATGGTTGCTGTGCTCAGGAT+CGG | 0.550928 | 4_2:+45319033 | Msa0602090:CDS |
| AAATTTCGTGGCCTAGCTGA+AGG | 0.577567 | 4_2:+45321609 | Msa0602090:three_prime_UTR |
| TGGGAAATTTACCTTCAGCT+AGG | 0.583936 | 4_2:-45321620 | None:intergenic |
| CGAATTAGGACGATGTTGAA+GGG | 0.589179 | 4_2:+45318816 | Msa0602090:CDS |
| TGAAATGGAAACGTGTATGA+TGG | 0.599020 | 4_2:+45321428 | Msa0602090:three_prime_UTR |
| AGCTGAAGGTAAATTTCCCA+GGG | 0.604087 | 4_2:+45321623 | Msa0602090:three_prime_UTR |
| GGTGTTTCTGACACAATGAA+GGG | 0.610475 | 4_2:-45318437 | None:intergenic |
| GTTTCTTGAACAATTAGCAG+AGG | 0.611905 | 4_2:+45319004 | Msa0602090:CDS |
| TAAGAGAGACAAACTCAAGA+GGG | 0.613384 | 4_2:+45321329 | Msa0602090:CDS |
| AAGAAACTCAATTTCACCAA+CGG | 0.622074 | 4_2:+45318690 | Msa0602090:CDS |
| TTTGGCTATTAACAATGCTG+CGG | 0.635948 | 4_2:+45318875 | Msa0602090:CDS |
| AACTCAAGAGGGAATAAAGG+AGG | 0.639462 | 4_2:+45321340 | Msa0602090:CDS |
| TTAAGAGAGACAAACTCAAG+AGG | 0.641585 | 4_2:+45321328 | Msa0602090:CDS |
| AAGAAGAAAGAAACATGCAA+AGG | 0.664587 | 4_2:+45318746 | Msa0602090:CDS |
| AGCTTTAAAGAAGAGTGCAA+CGG | 0.672288 | 4_2:-45321491 | None:intergenic |
| AAGTTCGCATTGCCACAGCA+AGG | 0.675857 | 4_2:-45321544 | None:intergenic |
| GTTGCTAAATACTAACGACA+GGG | 0.691927 | 4_2:+45321668 | Msa0602090:three_prime_UTR |
| GCTAAATACTAACGACAGGG+TGG | 0.692165 | 4_2:+45321671 | Msa0602090:three_prime_UTR |
| TCCTGAGAAAGTGAAAGCCG+AGG | 0.694332 | 4_2:+45321300 | Msa0602090:CDS |
| TTATCAAAGTACAATCACAA+TGG | 0.696981 | 4_2:+45318521 | Msa0602090:exon |
| GCTGAAGGTAAATTTCCCAG+GGG | 0.786984 | 4_2:+45321624 | Msa0602090:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAACTTATTATTAAAGTT+AGG | + | chr4_2:45320533-45320552 | Msa0602090:intron | 10.0% |
| !! | TTAACTTATTATTAAAGTTA+GGG | + | chr4_2:45320534-45320553 | Msa0602090:intron | 10.0% |
| !!! | TTTATTGTTATGGTTTTTAT+TGG | + | chr4_2:45318935-45318954 | Msa0602090:intron | 15.0% |
| !!! | TGTTATAATATAAATGCTTT+TGG | + | chr4_2:45319701-45319720 | Msa0602090:intron | 15.0% |
| !!! | GTTATAATATAAATGCTTTT+GGG | + | chr4_2:45319702-45319721 | Msa0602090:intron | 15.0% |
| !! | TTTATTTACCACTAATTAAA+AGG | + | chr4_2:45321243-45321262 | Msa0602090:intron | 15.0% |
| !! | TTATTTACCACTAATTAAAA+GGG | + | chr4_2:45321244-45321263 | Msa0602090:intron | 15.0% |
| !!! | ATTGTTATGTGTTTTTGATT+TGG | + | chr4_2:45318960-45318979 | Msa0602090:intron | 20.0% |
| !! | GTTGCGTTTAAATTATTATT+TGG | + | chr4_2:45319191-45319210 | Msa0602090:intron | 20.0% |
| !!! | TTTTCTTTGTTGGAAAATAT+TGG | + | chr4_2:45319637-45319656 | Msa0602090:intron | 20.0% |
| !! | AAATGGTCAAAAACAATAAA+CGG | - | chr4_2:45319817-45319836 | None:intergenic | 20.0% |
| !!! | CTATTAACTAGATTTGATTT+GGG | - | chr4_2:45320152-45320171 | None:intergenic | 20.0% |
| !! | ACTATTAACTAGATTTGATT+TGG | - | chr4_2:45320153-45320172 | None:intergenic | 20.0% |
| !! | CATTATCATGAATAAAAAAC+TGG | + | chr4_2:45320739-45320758 | Msa0602090:intron | 20.0% |
| !! | ATTAATCTAACCCATTAATT+AGG | + | chr4_2:45320782-45320801 | Msa0602090:intron | 20.0% |
| !! | TGGTAAATAAATACATGTAA+AGG | - | chr4_2:45321234-45321253 | None:intergenic | 20.0% |
| ! | TTATCAAAGTACAATCACAA+TGG | + | chr4_2:45318521-45318540 | Msa0602090:exon | 25.0% |
| !!! | ATAAGCTATTTCTATAGCAA+AGG | + | chr4_2:45319391-45319410 | Msa0602090:intron | 25.0% |
| ! | TATGAAAATAACCTGAGAAA+AGG | + | chr4_2:45319481-45319500 | Msa0602090:intron | 25.0% |
| !! | AATTTTCAAAACCTTTTCTC+AGG | - | chr4_2:45319495-45319514 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTAAGCCTATTT+GGG | - | chr4_2:45319543-45319562 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTAAGCCTATT+TGG | - | chr4_2:45319544-45319563 | None:intergenic | 25.0% |
| !!! | TTCAGGTTTTGTAATCTATT+AGG | + | chr4_2:45319668-45319687 | Msa0602090:intron | 25.0% |
| ! | TACAAATTAATATGTGACAG+TGG | + | chr4_2:45319753-45319772 | Msa0602090:intron | 25.0% |
| !! | ATTTTGTACGTCTCTTATTA+CGG | + | chr4_2:45319783-45319802 | Msa0602090:intron | 25.0% |
| !! | TACTTTTCTTAGGAGAATAA+CGG | + | chr4_2:45320021-45320040 | Msa0602090:intron | 25.0% |
| !!! | TACTGTTTTTCTTTTCTTTC+TGG | + | chr4_2:45320097-45320116 | Msa0602090:intron | 25.0% |
| !! | ATTCTGTAACATTTTTGTGT+GGG | - | chr4_2:45320209-45320228 | None:intergenic | 25.0% |
| ! | GTTCATATGAATCAGAATAT+AGG | - | chr4_2:45320509-45320528 | None:intergenic | 25.0% |
| ! | TTATTAAAGTTAGGGTTAAG+TGG | + | chr4_2:45320542-45320561 | Msa0602090:intron | 25.0% |
| !! | TCAAATATTAAGTCTTGTGT+TGG | - | chr4_2:45320975-45320994 | None:intergenic | 25.0% |
| ! | TCTTATCAGTAATTAGGAAA+AGG | - | chr4_2:45321092-45321111 | None:intergenic | 25.0% |
| ! | GGAAATGTAAAACAAAATAG+TGG | + | chr4_2:45321366-45321385 | Msa0602090:exon | 25.0% |
| ! | TTTAACAAAAGAATAGGCTT+AGG | - | chr4_2:45321396-45321415 | None:intergenic | 25.0% |
| ! | GACAGATTTAACAAAAGAAT+AGG | - | chr4_2:45321402-45321421 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTTTTCCTTGCTG+TGG | + | chr4_2:45321532-45321551 | Msa0602090:three_prime_UTR | 25.0% |
| !! | TTTTTATGCTGAAAATTTCG+TGG | + | chr4_2:45321597-45321616 | Msa0602090:three_prime_UTR | 25.0% |
| ! | TCTTTCTTGATTTTGCTTGT+AGG | - | chr4_2:45318612-45318631 | None:intergenic | 30.0% |
| TTCGTTCTTTATCTTCTCTT+TGG | - | chr4_2:45318655-45318674 | None:intergenic | 30.0% | |
| AAGAAACTCAATTTCACCAA+CGG | + | chr4_2:45318690-45318709 | Msa0602090:CDS | 30.0% | |
| AAATTCCAATTCCAAAGAAC+AGG | + | chr4_2:45318713-45318732 | Msa0602090:CDS | 30.0% | |
| AAGAAGAAAGAAACATGCAA+AGG | + | chr4_2:45318746-45318765 | Msa0602090:CDS | 30.0% | |
| TGTTTCCTATGAATCGAATT+AGG | + | chr4_2:45318802-45318821 | Msa0602090:CDS | 30.0% | |
| !!! | ATTTGGTGTTTGTGTTTTGT+AGG | + | chr4_2:45318977-45318996 | Msa0602090:intron | 30.0% |
| TAGTGTCAAATGCTTATGTT+TGG | + | chr4_2:45319225-45319244 | Msa0602090:intron | 30.0% | |
| AGTGTCAAATGCTTATGTTT+GGG | + | chr4_2:45319226-45319245 | Msa0602090:intron | 30.0% | |
| TTTCATAAGTTCTCCCAAAT+AGG | + | chr4_2:45319527-45319546 | Msa0602090:intron | 30.0% | |
| TTCTTGGAAGTTGAAACTTA+AGG | + | chr4_2:45319609-45319628 | Msa0602090:intron | 30.0% | |
| TCTTGGAAGTTGAAACTTAA+GGG | + | chr4_2:45319610-45319629 | Msa0602090:intron | 30.0% | |
| ! | TTTGTTGGAAAATATTGGCT+TGG | + | chr4_2:45319642-45319661 | Msa0602090:intron | 30.0% |
| !!! | CATTTGTGGTTACTTTTCTT+AGG | + | chr4_2:45320011-45320030 | Msa0602090:intron | 30.0% |
| TATCATATTCCCTACTCTAA+AGG | - | chr4_2:45320079-45320098 | None:intergenic | 30.0% | |
| ! | GATTCTGTAACATTTTTGTG+TGG | - | chr4_2:45320210-45320229 | None:intergenic | 30.0% |
| ACTGATAGGCTTAATATGAT+TGG | - | chr4_2:45320240-45320259 | None:intergenic | 30.0% | |
| ATATTAAGCCTATCAGTTCA+TGG | + | chr4_2:45320243-45320262 | Msa0602090:intron | 30.0% | |
| TATTAAGCCTATCAGTTCAT+GGG | + | chr4_2:45320244-45320263 | Msa0602090:intron | 30.0% | |
| AACTATTCAGAAGTGAATAG+AGG | - | chr4_2:45320440-45320459 | None:intergenic | 30.0% | |
| GGTGATATTTATAAGTGGAT+AGG | - | chr4_2:45320468-45320487 | None:intergenic | 30.0% | |
| GAAGTGGTGATATTTATAAG+TGG | - | chr4_2:45320473-45320492 | None:intergenic | 30.0% | |
| !! | AGGTTTCTAAAACAAAGAAG+TGG | - | chr4_2:45320489-45320508 | None:intergenic | 30.0% |
| ! | TAAGTGCTGTAAACTAGAAA+AGG | + | chr4_2:45320596-45320615 | Msa0602090:intron | 30.0% |
| ! | AAGTGCTGTAAACTAGAAAA+GGG | + | chr4_2:45320597-45320616 | Msa0602090:intron | 30.0% |
| !! | ATCCTTTTTCGTTTTGTCTT+TGG | + | chr4_2:45320914-45320933 | Msa0602090:intron | 30.0% |
| CACATAAATAAACATGCACA+AGG | - | chr4_2:45321052-45321071 | None:intergenic | 30.0% | |
| CAGTTGTCTTATCAGTAATT+AGG | - | chr4_2:45321098-45321117 | None:intergenic | 30.0% | |
| CACTAGATTAAGTTTCAACA+GGG | - | chr4_2:45321188-45321207 | None:intergenic | 30.0% | |
| TCACTAGATTAAGTTTCAAC+AGG | - | chr4_2:45321189-45321208 | None:intergenic | 30.0% | |
| ! | AAATCTGTCACATTCTGAAA+TGG | + | chr4_2:45321413-45321432 | Msa0602090:three_prime_UTR | 30.0% |
| ! | TTTAAAGCTTCCATCTCATA+TGG | + | chr4_2:45321505-45321524 | Msa0602090:three_prime_UTR | 30.0% |
| AAAAATCTAGCCATATGAGA+TGG | - | chr4_2:45321518-45321537 | None:intergenic | 30.0% | |
| TAAACTCAGTGTAAGCTGAA+AGG | + | chr4_2:45318470-45318489 | Msa0602090:five_prime_UTR | 35.0% | |
| AAACTCAGTGTAAGCTGAAA+GGG | + | chr4_2:45318471-45318490 | Msa0602090:five_prime_UTR | 35.0% | |
| !!! | CTTCTTGTTGTTTTCTGCTA+TGG | - | chr4_2:45318562-45318581 | None:intergenic | 35.0% |
| ! | TTTGGAATTGGAATTTCCGT+TGG | - | chr4_2:45318709-45318728 | None:intergenic | 35.0% |
| !! | TTCTTCCTGTTCTTTGGAAT+TGG | - | chr4_2:45318721-45318740 | None:intergenic | 35.0% |
| ATCGTCCTAATTCGATTCAT+AGG | - | chr4_2:45318810-45318829 | None:intergenic | 35.0% | |
| ! | TGTTTCTCAGGAAGCTATTT+TGG | + | chr4_2:45318857-45318876 | Msa0602090:CDS | 35.0% |
| TTTGGCTATTAACAATGCTG+CGG | + | chr4_2:45318875-45318894 | Msa0602090:CDS | 35.0% | |
| GTTTCTTGAACAATTAGCAG+AGG | + | chr4_2:45319004-45319023 | Msa0602090:CDS | 35.0% | |
| TTAAACGCAACCACATTTGT+CGG | - | chr4_2:45319182-45319201 | None:intergenic | 35.0% | |
| ! | TACTAGATTTGGGATATTGC+TGG | - | chr4_2:45319272-45319291 | None:intergenic | 35.0% |
| TCCCAAATCTAGTAGCTTAT+CGG | + | chr4_2:45319278-45319297 | Msa0602090:intron | 35.0% | |
| ACCGATAAGCTACTAGATTT+GGG | - | chr4_2:45319282-45319301 | None:intergenic | 35.0% | |
| ATGTGTGAATGTCAAGTGTT+TGG | + | chr4_2:45319306-45319325 | Msa0602090:intron | 35.0% | |
| TGTGTGAATGTCAAGTGTTT+GGG | + | chr4_2:45319307-45319326 | Msa0602090:intron | 35.0% | |
| CAAGAATATAGACGCTTGTT+TGG | - | chr4_2:45319595-45319614 | None:intergenic | 35.0% | |
| CAAACAAGCGTCTATATTCT+TGG | + | chr4_2:45319593-45319612 | Msa0602090:intron | 35.0% | |
| ! | TAAGGGATGCTTTTCTTTGT+TGG | + | chr4_2:45319627-45319646 | Msa0602090:intron | 35.0% |
| !! | AAATATTGGCTTGGACATTC+AGG | + | chr4_2:45319651-45319670 | Msa0602090:intron | 35.0% |
| ! | ACCATTTGTTACCTTGTGAT+TGG | + | chr4_2:45319830-45319849 | Msa0602090:intron | 35.0% |
| ACCAATCACAAGGTAACAAA+TGG | - | chr4_2:45319834-45319853 | None:intergenic | 35.0% | |
| ACTGCTTGAGTAGAATTCTT+AGG | + | chr4_2:45319988-45320007 | Msa0602090:intron | 35.0% | |
| GTAGAATTCTTAGGCATTTG+TGG | + | chr4_2:45319997-45320016 | Msa0602090:intron | 35.0% | |
| !! | TTCTTAGGAGAATAACGGAT+AGG | + | chr4_2:45320026-45320045 | Msa0602090:intron | 35.0% |
| ATTAAGCCTATCAGTTCATG+GGG | + | chr4_2:45320245-45320264 | Msa0602090:intron | 35.0% | |
| !! | GTGTGATACTAGTATCGATT+CGG | + | chr4_2:45320310-45320329 | Msa0602090:intron | 35.0% |
| TAGAGGAAACTGTTCAAGAA+GGG | - | chr4_2:45320423-45320442 | None:intergenic | 35.0% | |
| ATAGAGGAAACTGTTCAAGA+AGG | - | chr4_2:45320424-45320443 | None:intergenic | 35.0% | |
| CTGTAAACTAGAAAAGGGAA+TGG | + | chr4_2:45320602-45320621 | Msa0602090:intron | 35.0% | |
| ATTTCCTTCACTATTGCACA+GGG | - | chr4_2:45320713-45320732 | None:intergenic | 35.0% | |
| ACTTCCAGTGCCTAATTAAT+GGG | - | chr4_2:45320795-45320814 | None:intergenic | 35.0% | |
| AACTTCCAGTGCCTAATTAA+TGG | - | chr4_2:45320796-45320815 | None:intergenic | 35.0% | |
| TATCAATAAGAGCAAAAGCG+AGG | + | chr4_2:45320865-45320884 | Msa0602090:intron | 35.0% | |
| GACCAAAGACAAAACGAAAA+AGG | - | chr4_2:45320919-45320938 | None:intergenic | 35.0% | |
| ATTTGACCTTTGCCATAAGT+AGG | + | chr4_2:45320989-45321008 | Msa0602090:intron | 35.0% | |
| AGAAGATATGACTTTCTGTC+TGG | + | chr4_2:45321151-45321170 | Msa0602090:CDS | 35.0% | |
| !! | GCAGAAACCCTTTTAATTAG+TGG | - | chr4_2:45321254-45321273 | None:intergenic | 35.0% |
| ACTTTCTCAGGAACAAAATC+TGG | - | chr4_2:45321292-45321311 | None:intergenic | 35.0% | |
| TTAAGAGAGACAAACTCAAG+AGG | + | chr4_2:45321328-45321347 | Msa0602090:CDS | 35.0% | |
| TAAGAGAGACAAACTCAAGA+GGG | + | chr4_2:45321329-45321348 | Msa0602090:CDS | 35.0% | |
| ACAAACTCAAGAGGGAATAA+AGG | + | chr4_2:45321337-45321356 | Msa0602090:CDS | 35.0% | |
| TGAAATGGAAACGTGTATGA+TGG | + | chr4_2:45321428-45321447 | Msa0602090:three_prime_UTR | 35.0% | |
| !! | AGCTTTAAAGAAGAGTGCAA+CGG | - | chr4_2:45321494-45321513 | None:intergenic | 35.0% |
| ! | TATGTTTTCTATCTTCCCCT+GGG | - | chr4_2:45321642-45321661 | None:intergenic | 35.0% |
| ! | ATATGTTTTCTATCTTCCCC+TGG | - | chr4_2:45321643-45321662 | None:intergenic | 35.0% |
| AGTTGCTAAATACTAACGAC+AGG | + | chr4_2:45321667-45321686 | Msa0602090:three_prime_UTR | 35.0% | |
| GTTGCTAAATACTAACGACA+GGG | + | chr4_2:45321668-45321687 | Msa0602090:three_prime_UTR | 35.0% | |
| ! | GGTGTTTCTGACACAATGAA+GGG | - | chr4_2:45318440-45318459 | None:intergenic | 40.0% |
| CACTGAGTTTACTACTCTCA+CGG | - | chr4_2:45318461-45318480 | None:intergenic | 40.0% | |
| TTCTGCTATGGAGTTGTTTG+AGG | - | chr4_2:45318550-45318569 | None:intergenic | 40.0% | |
| ! | TGTTGAGGTTTGTGGCTTTT+TGG | - | chr4_2:45318589-45318608 | None:intergenic | 40.0% |
| !! | GATTTTGCTTGTAGGTGTTG+AGG | - | chr4_2:45318604-45318623 | None:intergenic | 40.0% |
| TCCAAAGAACAGGAAGAAAG+TGG | + | chr4_2:45318723-45318742 | Msa0602090:CDS | 40.0% | |
| TCCACTTTCTTCCTGTTCTT+TGG | - | chr4_2:45318727-45318746 | None:intergenic | 40.0% | |
| TCGAATTAGGACGATGTTGA+AGG | + | chr4_2:45318815-45318834 | Msa0602090:CDS | 40.0% | |
| CGAATTAGGACGATGTTGAA+GGG | + | chr4_2:45318816-45318835 | Msa0602090:CDS | 40.0% | |
| CAATTAGCAGAGGATGCTTA+TGG | + | chr4_2:45319014-45319033 | Msa0602090:CDS | 40.0% | |
| ! | TTGTACTTGCTGCTTGTGTT+TGG | + | chr4_2:45319130-45319149 | Msa0602090:intron | 40.0% |
| CACCGATAAGCTACTAGATT+TGG | - | chr4_2:45319283-45319302 | None:intergenic | 40.0% | |
| TTGGGTCTGTTTGGATAAAC+AGG | + | chr4_2:45319325-45319344 | Msa0602090:intron | 40.0% | |
| CTGGTAAATGACCAATCACA+AGG | - | chr4_2:45319844-45319863 | None:intergenic | 40.0% | |
| TGCACGAAACACAACAAAAC+TGG | - | chr4_2:45319863-45319882 | None:intergenic | 40.0% | |
| !!! | AGAGCTTTTGCCTTTAGAGT+AGG | + | chr4_2:45320066-45320085 | Msa0602090:intron | 40.0% |
| !!! | GAGCTTTTGCCTTTAGAGTA+GGG | + | chr4_2:45320067-45320086 | Msa0602090:intron | 40.0% |
| ! | TGTTCAAGAAGGGAGGTATA+TGG | - | chr4_2:45320413-45320432 | None:intergenic | 40.0% |
| GGTTAAGTGGTTCAGAGATA+TGG | + | chr4_2:45320555-45320574 | Msa0602090:intron | 40.0% | |
| ACTAGAAAAGGGAATGGTGA+AGG | + | chr4_2:45320608-45320627 | Msa0602090:intron | 40.0% | |
| GATTTCCTTCACTATTGCAC+AGG | - | chr4_2:45320714-45320733 | None:intergenic | 40.0% | |
| CTAACCCATTAATTAGGCAC+TGG | + | chr4_2:45320788-45320807 | Msa0602090:intron | 40.0% | |
| AATAAGAGCAAAAGCGAGGA+GGG | + | chr4_2:45320869-45320888 | Msa0602090:intron | 40.0% | |
| ! | TTTTGTCTTTGGTCTGCACT+TGG | + | chr4_2:45320925-45320944 | Msa0602090:intron | 40.0% |
| TTCCAACCTACTTATGGCAA+AGG | - | chr4_2:45320998-45321017 | None:intergenic | 40.0% | |
| ! | GCAGTTTTCCAACCTACTTA+TGG | - | chr4_2:45321004-45321023 | None:intergenic | 40.0% |
| !! | CTGCTACTTTGTATGTCCAT+TGG | + | chr4_2:45321020-45321039 | Msa0602090:intron | 40.0% |
| ATGCACAAGGATCAATCCAA+TGG | - | chr4_2:45321039-45321058 | None:intergenic | 40.0% | |
| TGTCTCTCTTAATGCATCCT+CGG | - | chr4_2:45321320-45321339 | None:intergenic | 40.0% | |
| AACTCAAGAGGGAATAAAGG+AGG | + | chr4_2:45321340-45321359 | Msa0602090:CDS | 40.0% | |
| AAGAGGGAATAAAGGAGGTT+AGG | + | chr4_2:45321345-45321364 | Msa0602090:CDS | 40.0% | |
| GTGCAACGGTAAATACACTA+TGG | - | chr4_2:45321480-45321499 | None:intergenic | 40.0% | |
| TGGGAAATTTACCTTCAGCT+AGG | - | chr4_2:45321623-45321642 | None:intergenic | 40.0% | |
| TAGCTGAAGGTAAATTTCCC+AGG | + | chr4_2:45321622-45321641 | Msa0602090:three_prime_UTR | 40.0% | |
| AGCTGAAGGTAAATTTCCCA+GGG | + | chr4_2:45321623-45321642 | Msa0602090:three_prime_UTR | 40.0% | |
| ! | CGGTGTTTCTGACACAATGA+AGG | - | chr4_2:45318441-45318460 | None:intergenic | 45.0% |
| !! | CTTGTAGGTGTTGAGGTTTG+TGG | - | chr4_2:45318597-45318616 | None:intergenic | 45.0% |
| TAGCGATTTGCGTGTTTCTC+AGG | + | chr4_2:45318845-45318864 | Msa0602090:CDS | 45.0% | |
| !! | TGCTGCTTGTGTTTGGTGTT+TGG | + | chr4_2:45319137-45319156 | Msa0602090:intron | 45.0% |
| ! | GATTTGGGATATTGCTGGTG+TGG | - | chr4_2:45319267-45319286 | None:intergenic | 45.0% |
| GTCAAGTGTTTGGGTCTGTT+TGG | + | chr4_2:45319316-45319335 | Msa0602090:intron | 45.0% | |
| TCCATGTGATGTGAAGTGTG+TGG | + | chr4_2:45320373-45320392 | Msa0602090:intron | 45.0% | |
| TCCACACACTTCACATCACA+TGG | - | chr4_2:45320377-45320396 | None:intergenic | 45.0% | |
| AGGAAACTGTTCAAGAAGGG+AGG | - | chr4_2:45320420-45320439 | None:intergenic | 45.0% | |
| CTTTCCCTGTGCAATAGTGA+AGG | + | chr4_2:45320706-45320725 | Msa0602090:intron | 45.0% | |
| CAATAAGAGCAAAAGCGAGG+AGG | + | chr4_2:45320868-45320887 | Msa0602090:intron | 45.0% | |
| GACCTTTGCCATAAGTAGGT+TGG | + | chr4_2:45320993-45321012 | Msa0602090:intron | 45.0% | |
| AAATTTCGTGGCCTAGCTGA+AGG | + | chr4_2:45321609-45321628 | Msa0602090:three_prime_UTR | 45.0% | |
| GCTGAAGGTAAATTTCCCAG+GGG | + | chr4_2:45321624-45321643 | Msa0602090:three_prime_UTR | 45.0% | |
| !!! | TTTTTTTTTTTTTATTGTTA+TGG | + | chr4_2:45318925-45318944 | Msa0602090:intron | 5.0% |
| TGCTTATGGTTGCTGTGCTC+AGG | + | chr4_2:45319028-45319047 | Msa0602090:CDS | 50.0% | |
| ATGGTTGCTGTGCTCAGGAT+CGG | + | chr4_2:45319033-45319052 | Msa0602090:CDS | 50.0% | |
| GTGTCCAACACCGACAAATG+TGG | + | chr4_2:45319169-45319188 | Msa0602090:intron | 50.0% | |
| GCAACCACATTTGTCGGTGT+TGG | - | chr4_2:45319176-45319195 | None:intergenic | 50.0% | |
| TGGGACAGCTGCTAGATTGT+AGG | - | chr4_2:45320133-45320152 | None:intergenic | 50.0% | |
| CCAAGTCCCCATGAACTGAT+AGG | - | chr4_2:45320254-45320273 | None:intergenic | 50.0% | |
| CCTATCAGTTCATGGGGACT+TGG | + | chr4_2:45320251-45320270 | Msa0602090:intron | 50.0% | |
| TCAGTTCATGGGGACTTGGA+AGG | + | chr4_2:45320255-45320274 | Msa0602090:intron | 50.0% | |
| TCCTGAGAAAGTGAAAGCCG+AGG | + | chr4_2:45321300-45321319 | Msa0602090:CDS | 50.0% | |
| TCCTCGGCTTTCACTTTCTC+AGG | - | chr4_2:45321304-45321323 | None:intergenic | 50.0% | |
| AAGTTCGCATTGCCACAGCA+AGG | - | chr4_2:45321547-45321566 | None:intergenic | 50.0% | |
| TCATGGGGACTTGGAAGGCA+TGG | + | chr4_2:45320260-45320279 | Msa0602090:intron | 55.0% | |
| ! | CATGGGGACTTGGAAGGCAT+GGG | + | chr4_2:45320261-45320280 | Msa0602090:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 45318434 | 45321693 | 45318434 | ID=Msa0602090;Name=Msa0602090 |
| chr4_2 | mRNA | 45318434 | 45321693 | 45318434 | ID=Msa0602090-mRNA-1;Parent=Msa0602090;Name=Msa0602090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=106|1|1|1|1|1|4|327|185 |
| chr4_2 | exon | 45318434 | 45318896 | 45318434 | ID=Msa0602090-mRNA-1:exon:10157;Parent=Msa0602090-mRNA-1 |
| chr4_2 | exon | 45318999 | 45319083 | 45318999 | ID=Msa0602090-mRNA-1:exon:10158;Parent=Msa0602090-mRNA-1 |
| chr4_2 | exon | 45321131 | 45321172 | 45321131 | ID=Msa0602090-mRNA-1:exon:10159;Parent=Msa0602090-mRNA-1 |
| chr4_2 | exon | 45321293 | 45321693 | 45321293 | ID=Msa0602090-mRNA-1:exon:10160;Parent=Msa0602090-mRNA-1 |
| chr4_2 | five_prime_UTR | 45318434 | 45318539 | 45318434 | ID=Msa0602090-mRNA-1:five_prime_utr;Parent=Msa0602090-mRNA-1 |
| chr4_2 | CDS | 45318540 | 45318896 | 45318540 | ID=Msa0602090-mRNA-1:cds;Parent=Msa0602090-mRNA-1 |
| chr4_2 | CDS | 45318999 | 45319083 | 45318999 | ID=Msa0602090-mRNA-1:cds;Parent=Msa0602090-mRNA-1 |
| chr4_2 | CDS | 45321131 | 45321172 | 45321131 | ID=Msa0602090-mRNA-1:cds;Parent=Msa0602090-mRNA-1 |
| chr4_2 | CDS | 45321293 | 45321366 | 45321293 | ID=Msa0602090-mRNA-1:cds;Parent=Msa0602090-mRNA-1 |
| chr4_2 | three_prime_UTR | 45321367 | 45321693 | 45321367 | ID=Msa0602090-mRNA-1:three_prime_utr;Parent=Msa0602090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
