Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602600 | XP_024637264.1 | 85.821 | 134 | 17 | 1 | 27 | 160 | 33 | 164 | 1.63e-79 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602600 | G7JQ00 | 85.821 | 134 | 17 | 1 | 27 | 160 | 93 | 224 | 4.73e-79 | 243 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0602600 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602600 | MtrunA17_Chr5g0393501 | 33.088 | 136 | 86 | 2 | 28 | 160 | 108 | 241 | 6.06e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACCTTAGTGGTAAAATT+TGG | 0.131735 | 4_2:-46368217 | None:intergenic |
| TAACCTTAGTGGTAAAATTT+GGG | 0.245976 | 4_2:-46368216 | None:intergenic |
| GAAGTTCCTATCGTTGGATA+TGG | 0.258835 | 4_2:+46368665 | Msa0602600:CDS |
| CACAGTGCATGTACAAAATC+AGG | 0.330296 | 4_2:+46368252 | Msa0602600:CDS |
| CATAAGGTCCGCACAACATT+AGG | 0.337570 | 4_2:-46369198 | None:intergenic |
| TAGGGACTACCTCATACTTT+TGG | 0.338565 | 4_2:+46369145 | Msa0602600:intron |
| AATCGTGATGTTTCACTCTA+AGG | 0.342040 | 4_2:-46369174 | None:intergenic |
| GAACGAACATTTAACCTTAG+TGG | 0.367361 | 4_2:-46368227 | None:intergenic |
| GATCGACGATGTCACCGAAC+AGG | 0.414127 | 4_2:+46368687 | Msa0602600:CDS |
| TCCGAACATCACATTTGGTA+TGG | 0.417548 | 4_2:-46369260 | None:intergenic |
| ACCTTTGAAGTTCCTATCGT+TGG | 0.439777 | 4_2:+46368659 | Msa0602600:CDS |
| CCGAACATCACATTTGGTAT+GGG | 0.451435 | 4_2:-46369259 | None:intergenic |
| TGCCGCACTCATGGAATGAT+AGG | 0.462626 | 4_2:-46368621 | None:intergenic |
| TTGTGCTGCCAATGGTATTG+AGG | 0.463000 | 4_2:+46369300 | Msa0602600:CDS |
| CCAAATGTGATGTTCGGAAA+AGG | 0.475440 | 4_2:+46369265 | Msa0602600:CDS |
| CCCATACCAAATGTGATGTT+CGG | 0.477035 | 4_2:+46369259 | Msa0602600:CDS |
| ACACGATGCTGCCGCACTCA+TGG | 0.487735 | 4_2:-46368630 | None:intergenic |
| AGGAATTTGCCAAAAGTATG+AGG | 0.497368 | 4_2:-46369154 | None:intergenic |
| TGTGCTGCCAATGGTATTGA+GGG | 0.501205 | 4_2:+46369301 | Msa0602600:CDS |
| ATTATTGCTTTCCAGTACCT+TGG | 0.503165 | 4_2:+46368539 | Msa0602600:intron |
| TGAAAGCATACGCCCCTGTT+CGG | 0.508374 | 4_2:-46368701 | None:intergenic |
| AACCTTAGTGGTAAAATTTG+GGG | 0.519564 | 4_2:-46368215 | None:intergenic |
| TCAGCTAGAGTAATGTTATG+AGG | 0.525176 | 4_2:-46368590 | None:intergenic |
| ACAGGAATGATATTGTCATA+AGG | 0.528831 | 4_2:-46369214 | None:intergenic |
| ATTGCTTTCCAGTACCTTGG+TGG | 0.549152 | 4_2:+46368542 | Msa0602600:intron |
| CGAACATCACATTTGGTATG+GGG | 0.552019 | 4_2:-46369258 | None:intergenic |
| TCTGTATATTTGAGTCTCAC+AGG | 0.555272 | 4_2:-46369232 | None:intergenic |
| ATCGACGATGTCACCGAACA+GGG | 0.567415 | 4_2:+46368688 | Msa0602600:CDS |
| TTTCAAGTGCAAGTGCGTCA+TGG | 0.567746 | 4_2:+46369339 | Msa0602600:CDS |
| GTCTCCGCCCTCAATACCAT+TGG | 0.581950 | 4_2:-46369308 | None:intergenic |
| ACCTTAGTGGTAAAATTTGG+GGG | 0.592838 | 4_2:-46368214 | None:intergenic |
| ATGTGATGTTCGGAAAAGGT+TGG | 0.606400 | 4_2:+46369269 | Msa0602600:CDS |
| TCCAACGATAGGAACTTCAA+AGG | 0.611311 | 4_2:-46368660 | None:intergenic |
| GCCGCACTCATGGAATGATA+GGG | 0.629158 | 4_2:-46368620 | None:intergenic |
| CACGATTACCTAATGTTGTG+CGG | 0.637450 | 4_2:+46369190 | Msa0602600:CDS |
| GTCGATCCATATCCAACGAT+AGG | 0.637968 | 4_2:-46368671 | None:intergenic |
| ACCCTATCATTCCATGAGTG+CGG | 0.640367 | 4_2:+46368619 | Msa0602600:CDS |
| GCACTCATGGAATGATAGGG+TGG | 0.649652 | 4_2:-46368617 | None:intergenic |
| TTTGAAATCTACTTCCACCA+AGG | 0.681040 | 4_2:-46368556 | None:intergenic |
| TCGACGATGTCACCGAACAG+GGG | 0.700233 | 4_2:+46368689 | Msa0602600:CDS |
| GCTGCCAATGGTATTGAGGG+CGG | 0.739556 | 4_2:+46369304 | Msa0602600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTATTGAATAAGT+AGG | + | chr4_2:46368758-46368777 | Msa0602600:intron | 10.0% |
| !!! | ATTTTATTTTGCTTTATATA+TGG | + | chr4_2:46368987-46369006 | Msa0602600:intron | 10.0% |
| !!! | GTTTTTTTTTTCTTTTTTTT+AGG | + | chr4_2:46369126-46369145 | Msa0602600:intron | 10.0% |
| !! | AAAAAAATTATTGAATAAGT+AGG | + | chr4_2:46368758-46368777 | Msa0602600:intron | 10.0% |
| !!! | ATTTTATTTTGCTTTATATA+TGG | + | chr4_2:46368987-46369006 | Msa0602600:intron | 10.0% |
| !!! | GTTTTTTTTTTCTTTTTTTT+AGG | + | chr4_2:46369126-46369145 | Msa0602600:intron | 10.0% |
| !! | TTCTATTTAAATAAGATGAA+CGG | + | chr4_2:46368302-46368321 | Msa0602600:intron | 15.0% |
| !!! | AATAATTTTTTTTCTCTTTG+GGG | - | chr4_2:46368750-46368769 | None:intergenic | 15.0% |
| !!! | CAATAATTTTTTTTCTCTTT+GGG | - | chr4_2:46368751-46368770 | None:intergenic | 15.0% |
| !!! | TCAATAATTTTTTTTCTCTT+TGG | - | chr4_2:46368752-46368771 | None:intergenic | 15.0% |
| !! | TTCTATTTAAATAAGATGAA+CGG | + | chr4_2:46368302-46368321 | Msa0602600:intron | 15.0% |
| !!! | AATAATTTTTTTTCTCTTTG+GGG | - | chr4_2:46368750-46368769 | None:intergenic | 15.0% |
| !!! | CAATAATTTTTTTTCTCTTT+GGG | - | chr4_2:46368751-46368770 | None:intergenic | 15.0% |
| !!! | TCAATAATTTTTTTTCTCTT+TGG | - | chr4_2:46368752-46368771 | None:intergenic | 15.0% |
| !! | TAGCCAACTATATATTATTA+GGG | - | chr4_2:46368805-46368824 | None:intergenic | 20.0% |
| !! | TTCTACCTAAAATTAAACTT+GGG | - | chr4_2:46368829-46368848 | None:intergenic | 20.0% |
| !! | ATTCTACCTAAAATTAAACT+TGG | - | chr4_2:46368830-46368849 | None:intergenic | 20.0% |
| !!! | ATTGCTATTTTATGGTTTTT+AGG | - | chr4_2:46368914-46368933 | None:intergenic | 20.0% |
| !! | CCAATAAACAAAAAAAATCA+TGG | - | chr4_2:46368940-46368959 | None:intergenic | 20.0% |
| !!! | CCATGATTTTTTTTGTTTAT+TGG | + | chr4_2:46368937-46368956 | Msa0602600:intron | 20.0% |
| !!! | AAGCTATCAAATTTTTTATG+AGG | - | chr4_2:46369016-46369035 | None:intergenic | 20.0% |
| !! | TAGCCAACTATATATTATTA+GGG | - | chr4_2:46368805-46368824 | None:intergenic | 20.0% |
| !! | TTCTACCTAAAATTAAACTT+GGG | - | chr4_2:46368829-46368848 | None:intergenic | 20.0% |
| !! | ATTCTACCTAAAATTAAACT+TGG | - | chr4_2:46368830-46368849 | None:intergenic | 20.0% |
| !!! | ATTGCTATTTTATGGTTTTT+AGG | - | chr4_2:46368914-46368933 | None:intergenic | 20.0% |
| !! | CCAATAAACAAAAAAAATCA+TGG | - | chr4_2:46368940-46368959 | None:intergenic | 20.0% |
| !!! | CCATGATTTTTTTTGTTTAT+TGG | + | chr4_2:46368937-46368956 | Msa0602600:intron | 20.0% |
| !!! | AAGCTATCAAATTTTTTATG+AGG | - | chr4_2:46369016-46369035 | None:intergenic | 20.0% |
| ! | TAACCTTAGTGGTAAAATTT+GGG | - | chr4_2:46368219-46368238 | None:intergenic | 25.0% |
| ! | TTAACCTTAGTGGTAAAATT+TGG | - | chr4_2:46368220-46368239 | None:intergenic | 25.0% |
| ! | AAATATTCAACAACGAAGAA+TGG | - | chr4_2:46368377-46368396 | None:intergenic | 25.0% |
| ! | TACCCCTAATAATATATAGT+TGG | + | chr4_2:46368799-46368818 | Msa0602600:intron | 25.0% |
| ! | AGCCAACTATATATTATTAG+GGG | - | chr4_2:46368804-46368823 | None:intergenic | 25.0% |
| ! | GTAGCCAACTATATATTATT+AGG | - | chr4_2:46368806-46368825 | None:intergenic | 25.0% |
| ! | TCTACCTAAAATTAAACTTG+GGG | - | chr4_2:46368828-46368847 | None:intergenic | 25.0% |
| !!! | ATTTTATGGTTTTTAGGAGA+CGG | - | chr4_2:46368908-46368927 | None:intergenic | 25.0% |
| !!! | CATGGAATATTGCTATTTTA+TGG | - | chr4_2:46368922-46368941 | None:intergenic | 25.0% |
| !!! | CTATCAAATTTTTTATGAGG+TGG | - | chr4_2:46369013-46369032 | None:intergenic | 25.0% |
| ! | TAACCTTAGTGGTAAAATTT+GGG | - | chr4_2:46368219-46368238 | None:intergenic | 25.0% |
| ! | TTAACCTTAGTGGTAAAATT+TGG | - | chr4_2:46368220-46368239 | None:intergenic | 25.0% |
| ! | AAATATTCAACAACGAAGAA+TGG | - | chr4_2:46368377-46368396 | None:intergenic | 25.0% |
| ! | TACCCCTAATAATATATAGT+TGG | + | chr4_2:46368799-46368818 | Msa0602600:intron | 25.0% |
| ! | AGCCAACTATATATTATTAG+GGG | - | chr4_2:46368804-46368823 | None:intergenic | 25.0% |
| ! | GTAGCCAACTATATATTATT+AGG | - | chr4_2:46368806-46368825 | None:intergenic | 25.0% |
| ! | TCTACCTAAAATTAAACTTG+GGG | - | chr4_2:46368828-46368847 | None:intergenic | 25.0% |
| !!! | ATTTTATGGTTTTTAGGAGA+CGG | - | chr4_2:46368908-46368927 | None:intergenic | 25.0% |
| !!! | CATGGAATATTGCTATTTTA+TGG | - | chr4_2:46368922-46368941 | None:intergenic | 25.0% |
| !!! | CTATCAAATTTTTTATGAGG+TGG | - | chr4_2:46369013-46369032 | None:intergenic | 25.0% |
| AACCTTAGTGGTAAAATTTG+GGG | - | chr4_2:46368218-46368237 | None:intergenic | 30.0% | |
| AGTTAGGCAGAAAAAGTTTA+CGG | - | chr4_2:46368331-46368350 | None:intergenic | 30.0% | |
| TGTTCAACAAATCAGTTAGT+CGG | + | chr4_2:46368456-46368475 | Msa0602600:intron | 30.0% | |
| !! | CTTACTTTTCAATCGAACTT+TGG | + | chr4_2:46368871-46368890 | Msa0602600:intron | 30.0% |
| !! | TTTTATGGTTTTTAGGAGAC+GGG | - | chr4_2:46368907-46368926 | None:intergenic | 30.0% |
| ACAGGAATGATATTGTCATA+AGG | - | chr4_2:46369217-46369236 | None:intergenic | 30.0% | |
| AACCTTAGTGGTAAAATTTG+GGG | - | chr4_2:46368218-46368237 | None:intergenic | 30.0% | |
| AGTTAGGCAGAAAAAGTTTA+CGG | - | chr4_2:46368331-46368350 | None:intergenic | 30.0% | |
| TGTTCAACAAATCAGTTAGT+CGG | + | chr4_2:46368456-46368475 | Msa0602600:intron | 30.0% | |
| !! | CTTACTTTTCAATCGAACTT+TGG | + | chr4_2:46368871-46368890 | Msa0602600:intron | 30.0% |
| !! | TTTTATGGTTTTTAGGAGAC+GGG | - | chr4_2:46368907-46368926 | None:intergenic | 30.0% |
| ACAGGAATGATATTGTCATA+AGG | - | chr4_2:46369217-46369236 | None:intergenic | 30.0% | |
| ACCTTAGTGGTAAAATTTGG+GGG | - | chr4_2:46368217-46368236 | None:intergenic | 35.0% | |
| GAACGAACATTTAACCTTAG+TGG | - | chr4_2:46368230-46368249 | None:intergenic | 35.0% | |
| CTGCCTAACTTATATGATGT+CGG | + | chr4_2:46368341-46368360 | Msa0602600:intron | 35.0% | |
| TCTCCGACATCATATAAGTT+AGG | - | chr4_2:46368347-46368366 | None:intergenic | 35.0% | |
| ATTATTGCTTTCCAGTACCT+TGG | + | chr4_2:46368539-46368558 | Msa0602600:intron | 35.0% | |
| ! | TTTGAAATCTACTTCCACCA+AGG | - | chr4_2:46368559-46368578 | None:intergenic | 35.0% |
| TCAGCTAGAGTAATGTTATG+AGG | - | chr4_2:46368593-46368612 | None:intergenic | 35.0% | |
| !! | GCTACCCCAAGTTTAATTTT+AGG | + | chr4_2:46368821-46368840 | Msa0602600:intron | 35.0% |
| ! | AGGAATTTGCCAAAAGTATG+AGG | - | chr4_2:46369157-46369176 | None:intergenic | 35.0% |
| AATCGTGATGTTTCACTCTA+AGG | - | chr4_2:46369177-46369196 | None:intergenic | 35.0% | |
| TCTGTATATTTGAGTCTCAC+AGG | - | chr4_2:46369235-46369254 | None:intergenic | 35.0% | |
| ACCTTAGTGGTAAAATTTGG+GGG | - | chr4_2:46368217-46368236 | None:intergenic | 35.0% | |
| GAACGAACATTTAACCTTAG+TGG | - | chr4_2:46368230-46368249 | None:intergenic | 35.0% | |
| CTGCCTAACTTATATGATGT+CGG | + | chr4_2:46368341-46368360 | Msa0602600:intron | 35.0% | |
| TCTCCGACATCATATAAGTT+AGG | - | chr4_2:46368347-46368366 | None:intergenic | 35.0% | |
| ATTATTGCTTTCCAGTACCT+TGG | + | chr4_2:46368539-46368558 | Msa0602600:intron | 35.0% | |
| ! | TTTGAAATCTACTTCCACCA+AGG | - | chr4_2:46368559-46368578 | None:intergenic | 35.0% |
| TCAGCTAGAGTAATGTTATG+AGG | - | chr4_2:46368593-46368612 | None:intergenic | 35.0% | |
| !! | GCTACCCCAAGTTTAATTTT+AGG | + | chr4_2:46368821-46368840 | Msa0602600:intron | 35.0% |
| ! | AGGAATTTGCCAAAAGTATG+AGG | - | chr4_2:46369157-46369176 | None:intergenic | 35.0% |
| AATCGTGATGTTTCACTCTA+AGG | - | chr4_2:46369177-46369196 | None:intergenic | 35.0% | |
| TCTGTATATTTGAGTCTCAC+AGG | - | chr4_2:46369235-46369254 | None:intergenic | 35.0% | |
| ! | TCCCCCAAATTTTACCACTA+AGG | + | chr4_2:46368213-46368232 | Msa0602600:CDS | 40.0% |
| CACAGTGCATGTACAAAATC+AGG | + | chr4_2:46368252-46368271 | Msa0602600:CDS | 40.0% | |
| !! | ACCTTTGAAGTTCCTATCGT+TGG | + | chr4_2:46368659-46368678 | Msa0602600:CDS | 40.0% |
| TCCAACGATAGGAACTTCAA+AGG | - | chr4_2:46368663-46368682 | None:intergenic | 40.0% | |
| GAAGTTCCTATCGTTGGATA+TGG | + | chr4_2:46368665-46368684 | Msa0602600:CDS | 40.0% | |
| TAAACAACCTTCGATGACAG+CGG | - | chr4_2:46369041-46369060 | None:intergenic | 40.0% | |
| ! | TAGGGACTACCTCATACTTT+TGG | + | chr4_2:46369145-46369164 | Msa0602600:intron | 40.0% |
| CACGATTACCTAATGTTGTG+CGG | + | chr4_2:46369190-46369209 | Msa0602600:CDS | 40.0% | |
| CGAACATCACATTTGGTATG+GGG | - | chr4_2:46369261-46369280 | None:intergenic | 40.0% | |
| CCGAACATCACATTTGGTAT+GGG | - | chr4_2:46369262-46369281 | None:intergenic | 40.0% | |
| CCCATACCAAATGTGATGTT+CGG | + | chr4_2:46369259-46369278 | Msa0602600:CDS | 40.0% | |
| TCCGAACATCACATTTGGTA+TGG | - | chr4_2:46369263-46369282 | None:intergenic | 40.0% | |
| ! | CCTTTTCCGAACATCACATT+TGG | - | chr4_2:46369268-46369287 | None:intergenic | 40.0% |
| CCAAATGTGATGTTCGGAAA+AGG | + | chr4_2:46369265-46369284 | Msa0602600:CDS | 40.0% | |
| ATGTGATGTTCGGAAAAGGT+TGG | + | chr4_2:46369269-46369288 | Msa0602600:CDS | 40.0% | |
| ! | TCCCCCAAATTTTACCACTA+AGG | + | chr4_2:46368213-46368232 | Msa0602600:CDS | 40.0% |
| CACAGTGCATGTACAAAATC+AGG | + | chr4_2:46368252-46368271 | Msa0602600:CDS | 40.0% | |
| !! | ACCTTTGAAGTTCCTATCGT+TGG | + | chr4_2:46368659-46368678 | Msa0602600:CDS | 40.0% |
| TCCAACGATAGGAACTTCAA+AGG | - | chr4_2:46368663-46368682 | None:intergenic | 40.0% | |
| GAAGTTCCTATCGTTGGATA+TGG | + | chr4_2:46368665-46368684 | Msa0602600:CDS | 40.0% | |
| TAAACAACCTTCGATGACAG+CGG | - | chr4_2:46369041-46369060 | None:intergenic | 40.0% | |
| ! | TAGGGACTACCTCATACTTT+TGG | + | chr4_2:46369145-46369164 | Msa0602600:intron | 40.0% |
| CACGATTACCTAATGTTGTG+CGG | + | chr4_2:46369190-46369209 | Msa0602600:CDS | 40.0% | |
| CGAACATCACATTTGGTATG+GGG | - | chr4_2:46369261-46369280 | None:intergenic | 40.0% | |
| CCGAACATCACATTTGGTAT+GGG | - | chr4_2:46369262-46369281 | None:intergenic | 40.0% | |
| CCCATACCAAATGTGATGTT+CGG | + | chr4_2:46369259-46369278 | Msa0602600:CDS | 40.0% | |
| TCCGAACATCACATTTGGTA+TGG | - | chr4_2:46369263-46369282 | None:intergenic | 40.0% | |
| ! | CCTTTTCCGAACATCACATT+TGG | - | chr4_2:46369268-46369287 | None:intergenic | 40.0% |
| CCAAATGTGATGTTCGGAAA+AGG | + | chr4_2:46369265-46369284 | Msa0602600:CDS | 40.0% | |
| ATGTGATGTTCGGAAAAGGT+TGG | + | chr4_2:46369269-46369288 | Msa0602600:CDS | 40.0% | |
| ! | TCTAGCAAGTGTCATTGCTC+TGG | - | chr4_2:46368410-46368429 | None:intergenic | 45.0% |
| ! | GAGCAATGACACTTGCTAGA+TGG | + | chr4_2:46368410-46368429 | Msa0602600:intron | 45.0% |
| ! | TGACACTTGCTAGATGGTGA+TGG | + | chr4_2:46368416-46368435 | Msa0602600:intron | 45.0% |
| ! | GACACTTGCTAGATGGTGAT+GGG | + | chr4_2:46368417-46368436 | Msa0602600:intron | 45.0% |
| CTCCAACCATCTGTCAACAA+CGG | - | chr4_2:46368482-46368501 | None:intergenic | 45.0% | |
| ATTGCTTTCCAGTACCTTGG+TGG | + | chr4_2:46368542-46368561 | Msa0602600:intron | 45.0% | |
| ATCTACTTCCACCAAGGTAC+TGG | - | chr4_2:46368553-46368572 | None:intergenic | 45.0% | |
| ACCCTATCATTCCATGAGTG+CGG | + | chr4_2:46368619-46368638 | Msa0602600:CDS | 45.0% | |
| GTCGATCCATATCCAACGAT+AGG | - | chr4_2:46368674-46368693 | None:intergenic | 45.0% | |
| GCGTATGCTTTCATGACCAT+GGG | + | chr4_2:46368711-46368730 | Msa0602600:intron | 45.0% | |
| CGTATGCTTTCATGACCATG+GGG | + | chr4_2:46368712-46368731 | Msa0602600:intron | 45.0% | |
| CATAAGGTCCGCACAACATT+AGG | - | chr4_2:46369201-46369220 | None:intergenic | 45.0% | |
| ! | ACGAGTTTTTGTGCTGCCAA+TGG | + | chr4_2:46369292-46369311 | Msa0602600:CDS | 45.0% |
| TTGTGCTGCCAATGGTATTG+AGG | + | chr4_2:46369300-46369319 | Msa0602600:CDS | 45.0% | |
| ! | TGTGCTGCCAATGGTATTGA+GGG | + | chr4_2:46369301-46369320 | Msa0602600:CDS | 45.0% |
| ! | TTTCAAGTGCAAGTGCGTCA+TGG | + | chr4_2:46369339-46369358 | Msa0602600:CDS | 45.0% |
| ! | TCTAGCAAGTGTCATTGCTC+TGG | - | chr4_2:46368410-46368429 | None:intergenic | 45.0% |
| ! | GAGCAATGACACTTGCTAGA+TGG | + | chr4_2:46368410-46368429 | Msa0602600:intron | 45.0% |
| ! | TGACACTTGCTAGATGGTGA+TGG | + | chr4_2:46368416-46368435 | Msa0602600:intron | 45.0% |
| ! | GACACTTGCTAGATGGTGAT+GGG | + | chr4_2:46368417-46368436 | Msa0602600:intron | 45.0% |
| CTCCAACCATCTGTCAACAA+CGG | - | chr4_2:46368482-46368501 | None:intergenic | 45.0% | |
| ATTGCTTTCCAGTACCTTGG+TGG | + | chr4_2:46368542-46368561 | Msa0602600:intron | 45.0% | |
| ATCTACTTCCACCAAGGTAC+TGG | - | chr4_2:46368553-46368572 | None:intergenic | 45.0% | |
| ACCCTATCATTCCATGAGTG+CGG | + | chr4_2:46368619-46368638 | Msa0602600:CDS | 45.0% | |
| GTCGATCCATATCCAACGAT+AGG | - | chr4_2:46368674-46368693 | None:intergenic | 45.0% | |
| GCGTATGCTTTCATGACCAT+GGG | + | chr4_2:46368711-46368730 | Msa0602600:intron | 45.0% | |
| CGTATGCTTTCATGACCATG+GGG | + | chr4_2:46368712-46368731 | Msa0602600:intron | 45.0% | |
| CATAAGGTCCGCACAACATT+AGG | - | chr4_2:46369201-46369220 | None:intergenic | 45.0% | |
| ! | ACGAGTTTTTGTGCTGCCAA+TGG | + | chr4_2:46369292-46369311 | Msa0602600:CDS | 45.0% |
| TTGTGCTGCCAATGGTATTG+AGG | + | chr4_2:46369300-46369319 | Msa0602600:CDS | 45.0% | |
| ! | TGTGCTGCCAATGGTATTGA+GGG | + | chr4_2:46369301-46369320 | Msa0602600:CDS | 45.0% |
| ! | TTTCAAGTGCAAGTGCGTCA+TGG | + | chr4_2:46369339-46369358 | Msa0602600:CDS | 45.0% |
| !!! | TTTTTTTTTTCTTTTTTTTA+GGG | + | chr4_2:46369127-46369146 | Msa0602600:intron | 5.0% |
| !!! | TTTTTTTTTTCTTTTTTTTA+GGG | + | chr4_2:46369127-46369146 | Msa0602600:intron | 5.0% |
| GCACTCATGGAATGATAGGG+TGG | - | chr4_2:46368620-46368639 | None:intergenic | 50.0% | |
| GCCGCACTCATGGAATGATA+GGG | - | chr4_2:46368623-46368642 | None:intergenic | 50.0% | |
| TGCCGCACTCATGGAATGAT+AGG | - | chr4_2:46368624-46368643 | None:intergenic | 50.0% | |
| ATCGACGATGTCACCGAACA+GGG | + | chr4_2:46368688-46368707 | Msa0602600:CDS | 50.0% | |
| ! | TGAAAGCATACGCCCCTGTT+CGG | - | chr4_2:46368704-46368723 | None:intergenic | 50.0% |
| GGCGTATGCTTTCATGACCA+TGG | + | chr4_2:46368710-46368729 | Msa0602600:intron | 50.0% | |
| ATGCTTTCATGACCATGGGG+TGG | + | chr4_2:46368715-46368734 | Msa0602600:intron | 50.0% | |
| GCACTCATGGAATGATAGGG+TGG | - | chr4_2:46368620-46368639 | None:intergenic | 50.0% | |
| GCCGCACTCATGGAATGATA+GGG | - | chr4_2:46368623-46368642 | None:intergenic | 50.0% | |
| TGCCGCACTCATGGAATGAT+AGG | - | chr4_2:46368624-46368643 | None:intergenic | 50.0% | |
| ATCGACGATGTCACCGAACA+GGG | + | chr4_2:46368688-46368707 | Msa0602600:CDS | 50.0% | |
| ! | TGAAAGCATACGCCCCTGTT+CGG | - | chr4_2:46368704-46368723 | None:intergenic | 50.0% |
| GGCGTATGCTTTCATGACCA+TGG | + | chr4_2:46368710-46368729 | Msa0602600:intron | 50.0% | |
| ATGCTTTCATGACCATGGGG+TGG | + | chr4_2:46368715-46368734 | Msa0602600:intron | 50.0% | |
| AGTCGGCCGTTGTTGACAGA+TGG | + | chr4_2:46368473-46368492 | Msa0602600:intron | 55.0% | |
| GGCCGTTGTTGACAGATGGT+TGG | + | chr4_2:46368477-46368496 | Msa0602600:intron | 55.0% | |
| GATCGACGATGTCACCGAAC+AGG | + | chr4_2:46368687-46368706 | Msa0602600:CDS | 55.0% | |
| TCGACGATGTCACCGAACAG+GGG | + | chr4_2:46368689-46368708 | Msa0602600:CDS | 55.0% | |
| TCATGACCATGGGGTGGCTA+TGG | + | chr4_2:46368721-46368740 | Msa0602600:intron | 55.0% | |
| ! | GCTGCCAATGGTATTGAGGG+CGG | + | chr4_2:46369304-46369323 | Msa0602600:CDS | 55.0% |
| GTCTCCGCCCTCAATACCAT+TGG | - | chr4_2:46369311-46369330 | None:intergenic | 55.0% | |
| AGTCGGCCGTTGTTGACAGA+TGG | + | chr4_2:46368473-46368492 | Msa0602600:intron | 55.0% | |
| GGCCGTTGTTGACAGATGGT+TGG | + | chr4_2:46368477-46368496 | Msa0602600:intron | 55.0% | |
| GATCGACGATGTCACCGAAC+AGG | + | chr4_2:46368687-46368706 | Msa0602600:CDS | 55.0% | |
| TCGACGATGTCACCGAACAG+GGG | + | chr4_2:46368689-46368708 | Msa0602600:CDS | 55.0% | |
| TCATGACCATGGGGTGGCTA+TGG | + | chr4_2:46368721-46368740 | Msa0602600:intron | 55.0% | |
| ! | GCTGCCAATGGTATTGAGGG+CGG | + | chr4_2:46369304-46369323 | Msa0602600:CDS | 55.0% |
| GTCTCCGCCCTCAATACCAT+TGG | - | chr4_2:46369311-46369330 | None:intergenic | 55.0% | |
| ACACGATGCTGCCGCACTCA+TGG | - | chr4_2:46368633-46368652 | None:intergenic | 60.0% | |
| AGCTTCGCCGCTGTCATCGA+AGG | + | chr4_2:46369031-46369050 | Msa0602600:intron | 60.0% | |
| ACACGATGCTGCCGCACTCA+TGG | - | chr4_2:46368633-46368652 | None:intergenic | 60.0% | |
| AGCTTCGCCGCTGTCATCGA+AGG | + | chr4_2:46369031-46369050 | Msa0602600:intron | 60.0% | |
| GGGTAGCCATAGCCACCCCA+TGG | - | chr4_2:46368730-46368749 | None:intergenic | 65.0% | |
| GGGTAGCCATAGCCACCCCA+TGG | - | chr4_2:46368730-46368749 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 46368193 | 46369393 | 46368193 | ID=Msa0602600;Name=Msa0602600 |
| chr4_2 | mRNA | 46368193 | 46369393 | 46368193 | ID=Msa0602600-mRNA-1;Parent=Msa0602600;Name=Msa0602600-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|3|0|161 |
| chr4_2 | exon | 46368193 | 46368273 | 46368193 | ID=Msa0602600-mRNA-1:exon:10511;Parent=Msa0602600-mRNA-1 |
| chr4_2 | exon | 46368554 | 46368712 | 46368554 | ID=Msa0602600-mRNA-1:exon:10512;Parent=Msa0602600-mRNA-1 |
| chr4_2 | exon | 46369148 | 46369393 | 46369148 | ID=Msa0602600-mRNA-1:exon:10513;Parent=Msa0602600-mRNA-1 |
| chr4_2 | CDS | 46368193 | 46368273 | 46368193 | ID=Msa0602600-mRNA-1:cds;Parent=Msa0602600-mRNA-1 |
| chr4_2 | CDS | 46368554 | 46368712 | 46368554 | ID=Msa0602600-mRNA-1:cds;Parent=Msa0602600-mRNA-1 |
| chr4_2 | CDS | 46369148 | 46369393 | 46369148 | ID=Msa0602600-mRNA-1:cds;Parent=Msa0602600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
