AlfalfaGEDB | Msa0602630

M. sativa cultivar zhongmu-4 / Msa0602630

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602630	XP_003606540.1	61.783	314	74	6	371	640	74	385	5.30e-110	347
Msa0602630	XP_003606540.1	71.538	260	46	6	1	247	70	314	2.07e-109	346
Msa0602630	XP_003606540.1	76.800	125	24	2	247	370	125	245	5.77e-50	190

Showing 1 to 3 of 3 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602630	sp\|Q9LRY1\|PBL25_ARATH	49.425	261	108	4	12	252	33	289	3.07e-69	233
Msa0602630	sp\|Q9LRY1\|PBL25_ARATH	40.968	310	128	7	371	625	33	342	4.48e-56	198
Msa0602630	sp\|Q9LRY1\|PBL25_ARATH	54.839	124	54	1	247	370	90	211	7.68e-33	134

Showing 1 to 3 of 3 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602630	MtrunA17_Chr4g0030471	64.173	254	65	5	9	250	59	298	1.33e-102	317
Msa0602630	MtrunA17_Chr4g0030471	57.823	294	79	7	366	618	57	346	2.98e-95	297
Msa0602630	MtrunA17_Chr4g0030471	73.387	124	25	1	247	370	111	226	5.74e-53	186
Msa0602630	MtrunA17_Chr4g0030301	59.316	263	68	4	417	640	3	265	2.90e-91	284
Msa0602630	MtrunA17_Chr4g0030301	70.854	199	39	4	62	247	2	194	1.74e-85	269
Msa0602630	MtrunA17_Chr4g0030301	76.423	123	24	2	249	370	7	125	5.17e-54	186
Msa0602630	MtrunA17_Chr2g0327511	47.917	288	117	7	6	271	68	344	2.98e-73	241
Msa0602630	MtrunA17_Chr2g0327511	42.368	321	128	9	366	629	69	389	2.45e-65	221
Msa0602630	MtrunA17_Chr2g0327511	57.724	123	50	1	248	370	134	254	4.91e-36	140
Msa0602630	MtrunA17_Chr2g0327471	46.528	288	121	5	6	271	51	327	1.23e-72	240

Showing 1 to 10 of 1,507 entries

Previous1 2 3 4 5…151Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602630	AT2G28590.2	49.237	262	109	4	6	247	60	317	2.44e-71	234
Msa0602630	AT2G28590.2	43.657	268	101	6	364	581	59	326	1.39e-52	184
Msa0602630	AT2G28590.2	54.839	124	54	1	247	370	123	244	8.81e-33	129
Msa0602630	AT3G24790.1	49.425	261	108	4	12	252	15	271	1.75e-70	233
Msa0602630	AT3G24790.1	40.968	310	128	7	371	625	15	324	2.96e-57	198
Msa0602630	AT3G24790.1	54.839	124	54	1	247	370	72	193	4.75e-34	134
Msa0602630	AT3G24790.2	49.425	261	108	4	12	252	33	289	3.12e-70	233
Msa0602630	AT3G24790.2	40.968	310	128	7	371	625	33	342	4.55e-57	198
Msa0602630	AT3G24790.2	54.839	124	54	1	247	370	90	211	7.81e-34	134
Msa0602630	AT1G07870.1	49.421	259	107	4	9	247	68	322	5.84e-70	234

Showing 1 to 10 of 1,500 entries

Previous1 2 3 4 5…150Next

Find 96 sgRNAs with CRISPR-Local

Find 462 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGTTCCAACAAATC+AGG	0.312119	4_2:+46391297	Msa0602630:CDS
AAAATTGGTTCCAACAAATC+AGG	0.312119	4_2:+46399079	Msa0602630:CDS
AAACAGAGAACAAGGAATCC+GGG	0.561708	4_2:+46399420	Msa0602630:CDS
AAACAGTGAACAAGGAACCC+GGG	0.668616	4_2:+46391634	Msa0602630:CDS
AAATCAGATATTTACAACTT+TGG	0.406971	4_2:+46392283	Msa0602630:CDS
AACATATTAGAATTCTTGAT+TGG	0.342138	4_2:+46392011	Msa0602630:CDS
AACATATTAGAATTCTTGAT+TGG	0.342138	4_2:+46397022	Msa0602630:CDS
AACTGAAATAGCAAAGGGTG+TGG	0.590882	4_2:+46392054	Msa0602630:CDS
AACTGAAATAGCAAAGGGTG+TGG	0.590882	4_2:+46399781	Msa0602630:CDS
AATAGCAACTGAAATAGCAA+AGG	0.566758	4_2:+46392048	Msa0602630:CDS

Showing 1 to 10 of 96 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAACAGATAATTACAAGAGT+AGG	+	chr4_2:46391233-46391252	Msa0602630:CDS	30.0%
CACAACAATATCCAATCAAT+TGG	-	chr4_2:46391712-46391731	None:intergenic	30.0%
TCTTTGTAGGATCAAAGTTT+AGG	+	chr4_2:46391899-46391918	Msa0602630:intron	30.0%
AATAGCAACTGAAATAGCAA+AGG	+	chr4_2:46392048-46392067	Msa0602630:CDS	30.0%
ATAGCAACTGAAATAGCAAA+GGG	+	chr4_2:46392049-46392068	Msa0602630:CDS	30.0%
GCCCAAATTATGTTTCAAAA+AGG	+	chr4_2:46392194-46392213	Msa0602630:intron	30.0%
TGCAATATATGCAAGGTTTA+GGG	-	chr4_2:46392547-46392566	None:intergenic	30.0%
ATGCAATATATGCAAGGTTT+AGG	-	chr4_2:46392548-46392567	None:intergenic	30.0%
TCCTTAAAAAAGTGATGAGA+GGG	+	chr4_2:46392902-46392921	Msa0602630:intron	30.0%
TATTGCTTGGTTTACATCAA+CGG	+	chr4_2:46393620-46393639	Msa0602630:intron	30.0%

Showing 1 to 10 of 462 entries

Previous1 2 3 4 5…47Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	46391127	46400588	46391127	ID=Msa0602630;Name=Msa0602630
chr4_2	mRNA	46391127	46400588	46391127	ID=Msa0602630-mRNA-1;Parent=Msa0602630;Name=Msa0602630-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|0\|0\|1\|0.36\|0.33\|12\|0\|662
chr4_2	exon	46391127	46391318	46391127	ID=Msa0602630-mRNA-1:exon:10555;Parent=Msa0602630-mRNA-1
chr4_2	exon	46391608	46391797	46391608	ID=Msa0602630-mRNA-1:exon:10556;Parent=Msa0602630-mRNA-1
chr4_2	exon	46391996	46392179	46391996	ID=Msa0602630-mRNA-1:exon:10557;Parent=Msa0602630-mRNA-1
chr4_2	exon	46392216	46392387	46392216	ID=Msa0602630-mRNA-1:exon:10558;Parent=Msa0602630-mRNA-1
chr4_2	exon	46396677	46396866	46396677	ID=Msa0602630-mRNA-1:exon:10559;Parent=Msa0602630-mRNA-1
chr4_2	exon	46397007	46397175	46397007	ID=Msa0602630-mRNA-1:exon:10560;Parent=Msa0602630-mRNA-1
chr4_2	exon	46398929	46399100	46398929	ID=Msa0602630-mRNA-1:exon:10561;Parent=Msa0602630-mRNA-1
chr4_2	exon	46399409	46399545	46399409	ID=Msa0602630-mRNA-1:exon:10562;Parent=Msa0602630-mRNA-1
chr4_2	exon	46399769	46399990	46399769	ID=Msa0602630-mRNA-1:exon:10563;Parent=Msa0602630-mRNA-1
chr4_2	exon	46400022	46400106	46400022	ID=Msa0602630-mRNA-1:exon:10564;Parent=Msa0602630-mRNA-1
chr4_2	exon	46400299	46400307	46400299	ID=Msa0602630-mRNA-1:exon:10565;Parent=Msa0602630-mRNA-1
chr4_2	exon	46400322	46400588	46400322	ID=Msa0602630-mRNA-1:exon:10566;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46391127	46391318	46391127	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46391608	46391797	46391608	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46391996	46392179	46391996	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46392216	46392387	46392216	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46396677	46396866	46396677	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46397007	46397175	46397007	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46398929	46399100	46398929	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46399409	46399545	46399409	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46399769	46399990	46399769	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46400022	46400106	46400022	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46400299	46400307	46400299	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1
chr4_2	CDS	46400322	46400588	46400322	ID=Msa0602630-mRNA-1:cds;Parent=Msa0602630-mRNA-1

Gene Sequence

>Msa0602630

GATTCTGCATCTACTTCTAGAATTGATGAACTTACTATGGAAATTGTGACTTCAAATTTAAGAAATGAGGCGATACATAAATTCTGTTTTGATGAACTTATTGTCGCAACAGATAATTACAAGAGTAGGAACATTGTGGGTCAAGGAGGTTTTGGCAAGGTTTACAGAGGAAAATTGGTTCCAACAAATCAGGTCGTAGCTATAAAGCGACGTGGCTTAAACAGTGAACAAGGAACCCGGGAATTTACCACTGAAGTGGAGACATTGAGTAATGCCTGCCACAAAAATATTGTCCAATTGATTGGATATTGTTGTGAGAATGAGCACAAGCTGTTAGTTTATGAGTACATGAATTTGGGATCTTTGGAAGATCATTTGTTAGGTCATCGGCAAGGTAAACATATTAGAATTCTTGATTGGGATAGAAGAATGAAAATAGCAACTGAAATAGCAAAGGGTGTGGAGTATCTACATGTTAAAATGAATCCTCCTATGATACACTGTGACCTAAAAAGCTCAAATATTTTGTTGGGCGATGGATATGATGTAAACTTACCTGATTTTGGGATTTATGGCACAATTGTATATTGTGATCCATATTATGTAAAAAAAAAAAACGGTACTTTGTCATTCAAATCAGATATTTACAACTTTGGAGTTGTTCTTCTGGAGCTCATCAGTGGTAGAAGAGCTTTTGATGAAACAAGACCTGACGATGAACAAAATCTTGTTTTATGGGTCGTAGCTATAAAGCGACGTGGCTCAAATAGTGAACAAGGAACCCGGAAATTTACCACTGAAGTGGAGACATTGAGTAATGCCTGCCACAAAAATATTGTCCAATTGATTGGATATTGTTGTGAGAATGAGCACAAGCTGTTAGTTTATGAGTACATGAATTTGGGATCTTTGAAAGATCATTTGTTAGGTCATCGACAAGGTAAACATATTAGAATTCTTGATTGGGATACACGAATGAAAATTGCGACTAAAATAGCAAAGGGTGTGGAGTATCTACATGTTAAAATGAATCCTCCTATGATATACTGTGACCTAAAAAGCTCAAATATTTTGTTAGGCGATGGATATGTTGTAAAAATTGATGAACTTACTACGGAAATTGTGACTTTAAATTTAAGAAATGAGGCGATACAGAAATTCTGTTTTGATGAACTTAGTGTCGCAATAGATAATTTCAAGAGTAGGAACCATGTGGGTCAAGGAGGTTTTGGCAAGGTTTACAGAGGAAAATTGGTTCCAACAAATCAGCGACGTGGCTCAAACAGAGAACAAGGAATCCGGGAATTTACTACTGAAGTGGAGACATTGAGTAATGACTGCCACAAAAATATTGTCCAATTGATTGGATATTGTTGTGAGAATGACCACAAGCTATTAGTTTATGAAATGAAAATAGCAACTGAAATAGCAAAGGGTGTGGAGTATCTACATGTTAAAATGAATCTTCCTATGATATACTGTGACCTAAAAAGCTCAAATATTTTGTTGGGCGATGGATATGATGTAAACTTACCTGATTTTGGGTATGCTAAAGTAGGCCCAAATTATGTTTCAAAAACGATTTATGGCACAATTGTATATTGTGATCCATATTATGTAAAAAAAAGCTTTGGAGTTGTTCTTTTGGAGCTCATCAGTGGTAGAAGAGCTTTTGATGAAACAAGACCTGATGAACAAAATCTTGTTTTATGGGCAAAACCTGAACACATTCAAAGAAATTTTGACCCATTGCTAGAAGGTAAATATAATAAGAGAGGTTTACAGAAAGTTGTTGACATTGCTGCATTATGTGTTCAAAAGGAAGCTCCTCTTAGGCCTGATATAAGTCAAATTGTCGCAAAACTCGAAGCTCTAAATAAAACGAAATCTCATGCTAATGAAGCAGAAGGTTCTGGAGCTCATGTGTTGGACAAAGTTCTACAACCCCACCATCTTCTCTGGAGTGAAAATTGTGTCATGAATAAGTAA

Protein sequence

>Msa0602630

DSASTSRIDELTMEIVTSNLRNEAIHKFCFDELIVATDNYKSRNIVGQGGFGKVYRGKLVPTNQVVAIKRRGLNSEQGTREFTTEVETLSNACHKNIVQLIGYCCENEHKLLVYEYMNLGSLEDHLLGHRQGKHIRILDWDRRMKIATEIAKGVEYLHVKMNPPMIHCDLKSSNILLGDGYDVNLPDFGIYGTIVYCDPYYVKKKNGTLSFKSDIYNFGVVLLELISGRRAFDETRPDDEQNLVLWVVAIKRRGSNSEQGTRKFTTEVETLSNACHKNIVQLIGYCCENEHKLLVYEYMNLGSLKDHLLGHRQGKHIRILDWDTRMKIATKIAKGVEYLHVKMNPPMIYCDLKSSNILLGDGYVVKIDELTTEIVTLNLRNEAIQKFCFDELSVAIDNFKSRNHVGQGGFGKVYRGKLVPTNQRRGSNREQGIREFTTEVETLSNDCHKNIVQLIGYCCENDHKLLVYEMKIATEIAKGVEYLHVKMNLPMIYCDLKSSNILLGDGYDVNLPDFGYAKVGPNYVSKTIYGTIVYCDPYYVKKSFGVVLLELISGRRAFDETRPDEQNLVLWAKPEHIQRNFDPLLEGKYNKRGLQKVVDIAALCVQKEAPLRPDISQIVAKLEALNKTKSHANEAEGSGAHVLDKVLQPHHLLWSENCVMNK*