AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0602710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0602710 MtrunA17_Chr4g0030411 87.500 112 9 2 1 107 1 112 2.81e-65 197
Msa0602710 MtrunA17_Chr4g0030421 73.333 120 10 3 101 200 15 132 2.21e-44 144
Msa0602710 MtrunA17_Chr2g0327621 41.296 247 89 7 6 200 9 251 1.10e-42 143
Msa0602710 MtrunA17_Chr8g0387241 39.231 130 41 7 53 145 141 269 3.31e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0602710 AT5G59990.1 35.976 164 56 7 49 179 87 234 5.24e-17 77.0
Msa0602710 AT5G41380.1 35.912 181 61 8 34 172 107 274 9.31e-16 74.3

Find 54 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAATTAAGTATAAATT+TGG 0.158626 4_2:+46584379 Msa0602710:three_prime_UTR
CCTCTCCATCATTATTAATA+TGG 0.215056 4_2:-46584226 None:intergenic
TCAGCAAACAAAGTAGAAAA+AGG 0.225080 4_2:-46580282 None:intergenic
AGACACTATATGAGGAATTA+TGG 0.234337 4_2:-46584334 None:intergenic
TTAATATGGCTCCATTGATT+TGG 0.330401 4_2:-46584212 None:intergenic
TGGTTGTGCTGCTGCATATC+AGG 0.351829 4_2:-46580090 None:intergenic
GAATTGCTTGATCAAGAAAA+TGG 0.366594 4_2:+46580303 Msa0602710:CDS
GACTCGTCATGAGCAAGATT+TGG 0.366759 4_2:-46584308 None:intergenic
GACACTATATGAGGAATTAT+GGG 0.370530 4_2:-46584333 None:intergenic
CAGCGGCTGCACTAGCTACT+TGG 0.382126 4_2:+46580185 Msa0602710:CDS
TTCCTCTGGGCTGTAAGGAC+TGG 0.386798 4_2:-46582965 None:intergenic
GACAGTAGGCCACGTATTAG+AGG 0.396649 4_2:+46584152 Msa0602710:CDS
CTCAACTCTGGTGGTGGTGG+TGG 0.402700 4_2:+46580141 Msa0602710:CDS
AAGATGAGGAAGAAGAGAAC+TGG 0.411030 4_2:+46584255 Msa0602710:CDS
CAGTACTGGTGATCTTGATC+AGG 0.424707 4_2:+46580344 Msa0602710:CDS
TTGGGAATCAGTATGTTTGT+AGG 0.430394 4_2:+46584117 Msa0602710:intron
CAGCTCAACTCTGGTGGTGG+TGG 0.445463 4_2:+46580138 Msa0602710:intron
AGCGGCTGCACTAGCTACTT+GGG 0.456423 4_2:+46580186 Msa0602710:CDS
ATATGGCTCCATTGATTTGG+TGG 0.458606 4_2:-46584209 None:intergenic
TGGAGCCATATTAATAATGA+TGG 0.462252 4_2:+46584221 Msa0602710:CDS
TAATGAATCCACCAAATCAA+TGG 0.463510 4_2:+46584201 Msa0602710:CDS
TTAATACAAGACACTATATG+AGG 0.478126 4_2:-46584342 None:intergenic
CACTAGCTACTTGGGGTCGC+CGG 0.492708 4_2:+46580194 Msa0602710:CDS
GGACAGTTTATTTGATACAT+TGG 0.495314 4_2:+46584277 Msa0602710:CDS
CCACAGCTCAACTCTGGTGG+TGG 0.501156 4_2:+46580135 Msa0602710:intron
TAATGCTCCTCTGCATCAAT+CGG 0.513230 4_2:-46580218 None:intergenic
TGGAGAGGAATTAGAAGATG+AGG 0.517815 4_2:+46584241 Msa0602710:CDS
GTGCGGCGAGTTTACAGTAC+TGG 0.524680 4_2:+46580330 Msa0602710:CDS
TCGGTCCCACAGCTCAACTC+TGG 0.546806 4_2:+46580129 Msa0602710:intron
CTCCTCTGCATCAATCGGTC+CGG 0.559465 4_2:-46580213 None:intergenic
GTACTGTAAACTCGCCGCAC+CGG 0.574327 4_2:-46580327 None:intergenic
AGATGAGGAAGAAGAGAACT+GGG 0.574947 4_2:+46584256 Msa0602710:CDS
GCTTGATCAAGAAAATGGTC+CGG 0.575893 4_2:+46580308 Msa0602710:CDS
CGCCGGACCGATTGATGCAG+AGG 0.577048 4_2:+46580211 Msa0602710:CDS
GCGGCTGCACTAGCTACTTG+GGG 0.584032 4_2:+46580187 Msa0602710:CDS
TTACAGCCCAGAGGAAAAGA+AGG 0.592097 4_2:+46582972 Msa0602710:CDS
ACAGTAGGCCACGTATTAGA+GGG 0.598648 4_2:+46584153 Msa0602710:CDS
GTCCCACAGCTCAACTCTGG+TGG 0.604461 4_2:+46580132 Msa0602710:intron
GTATGTTTGTAGGAAGACAT+TGG 0.609319 4_2:+46584127 Msa0602710:intron
GTATATTTAACAAATTACAA+TGG 0.616526 4_2:+46584458 Msa0602710:three_prime_UTR
GGAAGACATTGGCAGACAGT+AGG 0.616987 4_2:+46584138 Msa0602710:CDS
TCATGAGCAAGATTTGGAGT+AGG 0.623530 4_2:-46584302 None:intergenic
CCATATTAATAATGATGGAG+AGG 0.627865 4_2:+46584226 Msa0602710:CDS
CTGCTGCATATCAGGCGTGG+TGG 0.663548 4_2:-46580082 None:intergenic
AATTATAATAGCTGTAGCAG+CGG 0.664085 4_2:+46580168 Msa0602710:CDS
ACACTATATGAGGAATTATG+GGG 0.665187 4_2:-46584332 None:intergenic
ATGCAGCAGCACAACCACCT+CGG 0.675442 4_2:+46580096 Msa0602710:CDS
AGCCAGTCCTTACAGCCCAG+AGG 0.687171 4_2:+46582963 Msa0602710:CDS
GTGCTGCTGCATATCAGGCG+TGG 0.690874 4_2:-46580085 None:intergenic
ATCAAGAAAATGGTCCGGTG+CGG 0.695020 4_2:+46580313 Msa0602710:CDS
GCAAATCTCCCTCTAATACG+TGG 0.703686 4_2:-46584161 None:intergenic
CCACCTCGGTGAATACGAGT+CGG 0.716126 4_2:+46580110 Msa0602710:CDS
CCGACTCGTATTCACCGAGG+TGG 0.729716 4_2:-46580110 None:intergenic
GGACCGACTCGTATTCACCG+AGG 0.797146 4_2:-46580113 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTAATAAATAT+CGG - chr4_2:46583138-46583157 None:intergenic 0.0%
!!! AATTATTGTTCTTTTTTTTT+TGG - chr4_2:46580514-46580533 None:intergenic 10.0%
!! TTATTCATATTTACTTAAAT+AGG - chr4_2:46580736-46580755 None:intergenic 10.0%
!!! ACTTCAATTTTTTTTTTTAT+AGG + chr4_2:46581815-46581834 Msa0602710:intron 10.0%
!!! ATATTATTTATATGATTTTC+AGG - chr4_2:46582467-46582486 None:intergenic 10.0%
!!! TTTAAGTTTTAAAACAATAT+TGG - chr4_2:46583171-46583190 None:intergenic 10.0%
!!! TTTAAAACTTAAATAGTATA+TGG + chr4_2:46583178-46583197 Msa0602710:intron 10.0%
!! TGTTTAATTAAGTATAAATT+TGG + chr4_2:46584379-46584398 Msa0602710:three_prime_UTR 10.0%
!! GTCATTATTATATAAAAAAG+TGG - chr4_2:46580404-46580423 None:intergenic 15.0%
!! CAAAGTAGTATAAAAATTAT+TGG - chr4_2:46580491-46580510 None:intergenic 15.0%
!! TATAAACTAGAATTGAAATA+TGG + chr4_2:46580875-46580894 Msa0602710:intron 15.0%
!! ATAAAATAAGATGTAAAATG+AGG - chr4_2:46582037-46582056 None:intergenic 15.0%
!!! AAAATCTATATCACTTTTTA+TGG + chr4_2:46582083-46582102 Msa0602710:intron 15.0%
!! AAAATGTATGTATTAAAATG+AGG - chr4_2:46583092-46583111 None:intergenic 15.0%
!! TTAAGAATATTATAACAACA+TGG + chr4_2:46583426-46583445 Msa0602710:intron 15.0%
!!! GTTTATTTTTGAAAAAACTA+GGG - chr4_2:46583777-46583796 None:intergenic 15.0%
!!! AGTTTATTTTTGAAAAAACT+AGG - chr4_2:46583778-46583797 None:intergenic 15.0%
!!! TCAAATTGTAACTATAATTT+TGG + chr4_2:46583915-46583934 Msa0602710:intron 15.0%
!! GTATATTTAACAAATTACAA+TGG + chr4_2:46584458-46584477 Msa0602710:three_prime_UTR 15.0%
!!! TATAAAAAAGTGGATTTTAG+AGG - chr4_2:46580394-46580413 None:intergenic 20.0%
!! GTAGTATAAAAATTATTGGA+CGG - chr4_2:46580487-46580506 None:intergenic 20.0%
!! CTCTATTTAAGAAAAAAGTT+TGG - chr4_2:46580636-46580655 None:intergenic 20.0%
!! TCATATTTACTTAAATAGGT+CGG - chr4_2:46580732-46580751 None:intergenic 20.0%
!!! GATGAAATAAACTTTTAAAC+AGG + chr4_2:46581009-46581028 Msa0602710:intron 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG + chr4_2:46581664-46581683 Msa0602710:intron 20.0%
!!! AATCATTTTTTGACAACTTT+TGG - chr4_2:46581749-46581768 None:intergenic 20.0%
!!! CATGAGTTTATTTTTTTCAA+TGG - chr4_2:46581924-46581943 None:intergenic 20.0%
!!! TAAACTCATGTTTTTTTTAG+AGG + chr4_2:46581934-46581953 Msa0602710:intron 20.0%
!! ATTGTCACAAAAGATAATAA+AGG - chr4_2:46582667-46582686 None:intergenic 20.0%
!! GAACTACAATAAGAAAATTA+AGG + chr4_2:46583032-46583051 Msa0602710:intron 20.0%
!!! TTTTAAAATTGTCTACGATT+CGG - chr4_2:46583286-46583305 None:intergenic 20.0%
!! TTTATTGAATGACCATATTA+GGG + chr4_2:46583313-46583332 Msa0602710:intron 20.0%
!! ATATAAAACCCTCATTATTT+GGG - chr4_2:46583514-46583533 None:intergenic 20.0%
!! AATATAAAACCCTCATTATT+TGG - chr4_2:46583515-46583534 None:intergenic 20.0%
!!! TTTTCAAAAATAAACTGAAG+TGG + chr4_2:46583782-46583801 Msa0602710:intron 20.0%
!! TGAAGAATGAAAATTAGAAT+TGG + chr4_2:46583831-46583850 Msa0602710:intron 20.0%
!!! TATTCTTTTGATTTTTTGCA+TGG + chr4_2:46583864-46583883 Msa0602710:intron 20.0%
!!! ATCTTAGTTTTGTTTTCTTT+TGG + chr4_2:46584098-46584117 Msa0602710:intron 20.0%
!!! TCTTAGTTTTGTTTTCTTTT+GGG + chr4_2:46584099-46584118 Msa0602710:intron 20.0%
! TAGAGGAAGAATATTGTAAA+CGG - chr4_2:46580377-46580396 None:intergenic 25.0%
! TTCTTAAATAGAGAAGACTT+AGG + chr4_2:46580643-46580662 Msa0602710:intron 25.0%
!!! CTTTCATAAGCTTACTTTTT+AGG - chr4_2:46581075-46581094 None:intergenic 25.0%
! CTAAAAAGTAAGCTTATGAA+AGG + chr4_2:46581073-46581092 Msa0602710:intron 25.0%
!!! GAGTCATTTTTCATTTATGT+AGG + chr4_2:46581242-46581261 Msa0602710:intron 25.0%
! AAAAAAAGCGATGATGAAAT+GGG - chr4_2:46581356-46581375 None:intergenic 25.0%
! AAAAAAAAGCGATGATGAAA+TGG - chr4_2:46581357-46581376 None:intergenic 25.0%
! CTAATTCTTGTCTACAAAAT+TGG - chr4_2:46581396-46581415 None:intergenic 25.0%
!! TTTTGTAGACAAGAATTAGA+TGG + chr4_2:46581397-46581416 Msa0602710:intron 25.0%
! TTCTTTCTTCTTAAACAACT+AGG + chr4_2:46581424-46581443 Msa0602710:intron 25.0%
!! TGTGTTGATATTTCAAATTG+AGG + chr4_2:46581584-46581603 Msa0602710:intron 25.0%
!!! ATGATATTTTGACATCCATT+TGG + chr4_2:46581608-46581627 Msa0602710:intron 25.0%
! TCAATAAAGTTGTTACCAAA+TGG - chr4_2:46581626-46581645 None:intergenic 25.0%
!!! TTGTTCTTCTCACTTTTTAT+TGG + chr4_2:46581651-46581670 Msa0602710:intron 25.0%
! AGATACTTATTAGATCAGTT+TGG - chr4_2:46582009-46582028 None:intergenic 25.0%
! ACTCCATTAAAGAAAATGTT+TGG - chr4_2:46582291-46582310 None:intergenic 25.0%
!! CATTTTCTTTAATGGAGTAA+TGG + chr4_2:46582293-46582312 Msa0602710:intron 25.0%
!!! ATGTCTTTTATTTTCTTCCA+GGG - chr4_2:46582322-46582341 None:intergenic 25.0%
!!! AATGTCTTTTATTTTCTTCC+AGG - chr4_2:46582323-46582342 None:intergenic 25.0%
! AACTTAAATAGTATATGGTC+CGG + chr4_2:46583183-46583202 Msa0602710:intron 25.0%
! CTACTTTAAACAATTTAAGC+TGG + chr4_2:46583230-46583249 Msa0602710:intron 25.0%
! GTTTATTGAATGACCATATT+AGG + chr4_2:46583312-46583331 Msa0602710:intron 25.0%
! TTATTGAATGACCATATTAG+GGG + chr4_2:46583314-46583333 Msa0602710:intron 25.0%
! TATAAAACCCTCATTATTTG+GGG - chr4_2:46583513-46583532 None:intergenic 25.0%
!! ACAAAATTTTCTCCATTCAT+TGG - chr4_2:46583667-46583686 None:intergenic 25.0%
!! CATCTAAGATTGAAAGTAAA+TGG + chr4_2:46583729-46583748 Msa0602710:intron 25.0%
! AAATGGAAACAGTAAAAAGT+TGG + chr4_2:46583746-46583765 Msa0602710:intron 25.0%
!! ACAATTTGATATTTTCTGTG+TGG - chr4_2:46583904-46583923 None:intergenic 25.0%
!!! GATTTGTTACTGTACATTAT+TGG - chr4_2:46584049-46584068 None:intergenic 25.0%
! TTAATACAAGACACTATATG+AGG - chr4_2:46584345-46584364 None:intergenic 25.0%
AATTATAATAGCTGTAGCAG+CGG + chr4_2:46580168-46580187 Msa0602710:CDS 30.0%
CAGCAAACAAAGTAGAAAAA+GGG - chr4_2:46580284-46580303 None:intergenic 30.0%
TCAGCAAACAAAGTAGAAAA+AGG - chr4_2:46580285-46580304 None:intergenic 30.0%
GAATTGCTTGATCAAGAAAA+TGG + chr4_2:46580303-46580322 Msa0602710:CDS 30.0%
ATGTTGAATCTAATGCAAGT+AGG + chr4_2:46580546-46580565 Msa0602710:intron 30.0%
TGTTGAATCTAATGCAAGTA+GGG + chr4_2:46580547-46580566 Msa0602710:intron 30.0%
! TTTTTGAATGATATGTGGCT+TGG - chr4_2:46580699-46580718 None:intergenic 30.0%
TATCATTCAAAAAGCCTCTT+AGG + chr4_2:46580706-46580725 Msa0602710:intron 30.0%
! AAACTTTTAAACAGGTTAGC+AGG + chr4_2:46581017-46581036 Msa0602710:intron 30.0%
AACACGTTTAAATTCCAAGT+TGG + chr4_2:46581218-46581237 Msa0602710:intron 30.0%
TAATATGGAGGTTAAAATCG+TGG - chr4_2:46581283-46581302 None:intergenic 30.0%
ACCTCCATATTAACAAAATC+CGG + chr4_2:46581291-46581310 Msa0602710:intron 30.0%
!!! ACACAATGATTTTAACTCTC+CGG - chr4_2:46581313-46581332 None:intergenic 30.0%
AAAAAAGCGATGATGAAATG+GGG - chr4_2:46581355-46581374 None:intergenic 30.0%
TTCTTCTTAAACAACTAGGA+AGG + chr4_2:46581428-46581447 Msa0602710:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr4_2:46581677-46581696 Msa0602710:intron 30.0%
!!! TCATGTTTTTTTTAGAGGAG+TGG + chr4_2:46581939-46581958 Msa0602710:intron 30.0%
AGGAGTTAACAAAAGATGAA+AGG + chr4_2:46581962-46581981 Msa0602710:intron 30.0%
GGAGTTAACAAAAGATGAAA+GGG + chr4_2:46581963-46581982 Msa0602710:intron 30.0%
CTTATTAGATCAGTTTGGAA+CGG - chr4_2:46582004-46582023 None:intergenic 30.0%
TGTGACAATGTGTTTATAAG+TGG - chr4_2:46582230-46582249 None:intergenic 30.0%
CCATTAAAGAAAATGTTTGG+TGG - chr4_2:46582288-46582307 None:intergenic 30.0%
! CCACCAAACATTTTCTTTAA+TGG + chr4_2:46582285-46582304 Msa0602710:intron 30.0%
CACTCAATGATATAAGATGT+AGG - chr4_2:46582405-46582424 None:intergenic 30.0%
ACATCTTATATCATTGAGTG+TGG + chr4_2:46582405-46582424 Msa0602710:intron 30.0%
CCATTAACTCTCTTTACATA+CGG - chr4_2:46582865-46582884 None:intergenic 30.0%
ATCAGATAGTCCTTTGTTAA+CGG + chr4_2:46582906-46582925 Msa0602710:intron 30.0%
! CAATTTTTCCCTGTATTTCT+CGG - chr4_2:46583343-46583362 None:intergenic 30.0%
GGGGAACTAAAAAATTGTAT+TGG - chr4_2:46583494-46583513 None:intergenic 30.0%
!!! TTTTAGTTCCCCAAATAATG+AGG + chr4_2:46583502-46583521 Msa0602710:intron 30.0%
! TTTAGTTCCCCAAATAATGA+GGG + chr4_2:46583503-46583522 Msa0602710:intron 30.0%
ATTGGAAGAGATAACTTTGA+GGG - chr4_2:46583554-46583573 None:intergenic 30.0%
GAGTTTGGAGATAAAAAGAA+GGG - chr4_2:46583621-46583640 None:intergenic 30.0%
! ATGGAGAAAATTTTGTGAAG+AGG + chr4_2:46583671-46583690 Msa0602710:intron 30.0%
TAATGAATCCACCAAATCAA+TGG + chr4_2:46584201-46584220 Msa0602710:CDS 30.0%
! TTAATATGGCTCCATTGATT+TGG - chr4_2:46584215-46584234 None:intergenic 30.0%
TGGAGCCATATTAATAATGA+TGG + chr4_2:46584221-46584240 Msa0602710:CDS 30.0%
CCTCTCCATCATTATTAATA+TGG - chr4_2:46584229-46584248 None:intergenic 30.0%
! CCATATTAATAATGATGGAG+AGG + chr4_2:46584226-46584245 Msa0602710:CDS 30.0%
GGACAGTTTATTTGATACAT+TGG + chr4_2:46584277-46584296 Msa0602710:CDS 30.0%
ACACTATATGAGGAATTATG+GGG - chr4_2:46584335-46584354 None:intergenic 30.0%
GACACTATATGAGGAATTAT+GGG - chr4_2:46584336-46584355 None:intergenic 30.0%
AGACACTATATGAGGAATTA+TGG - chr4_2:46584337-46584356 None:intergenic 30.0%
CAAACAAAGTAGAAAAAGGG+CGG - chr4_2:46580281-46580300 None:intergenic 35.0%
TAAAAATTATTGGACGGTCC+CGG - chr4_2:46580481-46580500 None:intergenic 35.0%
AATCTAATGCAAGTAGGGAT+GGG + chr4_2:46580552-46580571 Msa0602710:intron 35.0%
! GAGGCTTTTTGAATGATATG+TGG - chr4_2:46580704-46580723 None:intergenic 35.0%
AAACGTGTTCCTAATATCTG+AGG - chr4_2:46581207-46581226 None:intergenic 35.0%
TGAAAAATGACTCTCCAACT+TGG - chr4_2:46581235-46581254 None:intergenic 35.0%
! TCCGGATTTTGTTAATATGG+AGG - chr4_2:46581295-46581314 None:intergenic 35.0%
! CTCTCCGGATTTTGTTAATA+TGG - chr4_2:46581298-46581317 None:intergenic 35.0%
TGCAATATTTCACAAGTGTG+AGG + chr4_2:46581457-46581476 Msa0602710:intron 35.0%
AATTCAACGTCTTTAACCGT+CGG - chr4_2:46581530-46581549 None:intergenic 35.0%
AGAGAGAAAAAGGAAGAGAA+AGG + chr4_2:46581687-46581706 Msa0602710:intron 35.0%
TAGACTATGCACAACAATTG+AGG - chr4_2:46581850-46581869 None:intergenic 35.0%
TTGTGCATAGTCTACTAGTA+GGG + chr4_2:46581856-46581875 Msa0602710:intron 35.0%
!!! TGTTTTTTTTAGAGGAGTGG+AGG + chr4_2:46581942-46581961 Msa0602710:intron 35.0%
GACAATGTGTTTATAAGTGG+TGG - chr4_2:46582227-46582246 None:intergenic 35.0%
CATTGTTAAGAGTCCTACAT+CGG - chr4_2:46582264-46582283 None:intergenic 35.0%
ATATCATTGAGTGTGGACAT+CGG + chr4_2:46582412-46582431 Msa0602710:intron 35.0%
!!! CAGTTTTTTTGACAGAGATC+TGG - chr4_2:46582494-46582513 None:intergenic 35.0%
ATGTGTGTGATGTTTCATGT+CGG + chr4_2:46582593-46582612 Msa0602710:intron 35.0%
CCGTATGTAAAGAGAGTTAA+TGG + chr4_2:46582862-46582881 Msa0602710:intron 35.0%
ATGTTACTCTCCGTTAACAA+AGG - chr4_2:46582919-46582938 None:intergenic 35.0%
ATAGAAGCAAGAGAAATCAG+AGG + chr4_2:46583010-46583029 Msa0602710:intron 35.0%
GTAGTTGAACCATAACTTAG+AGG - chr4_2:46583214-46583233 None:intergenic 35.0%
CATTGGAAGAGATAACTTTG+AGG - chr4_2:46583555-46583574 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG - chr4_2:46583572-46583591 None:intergenic 35.0%
GGAAAAAATGAAGGAGTAAG+TGG - chr4_2:46583591-46583610 None:intergenic 35.0%
TTGGAGATAAAAAGAAGGGA+GGG - chr4_2:46583617-46583636 None:intergenic 35.0%
TTTGGAGATAAAAAGAAGGG+AGG - chr4_2:46583618-46583637 None:intergenic 35.0%
CGAGTTTGGAGATAAAAAGA+AGG - chr4_2:46583622-46583641 None:intergenic 35.0%
!!! TTAGGTTTTGTTTGCGAGTT+TGG - chr4_2:46583636-46583655 None:intergenic 35.0%
AAACTCGCAAACAAAACCTA+AGG + chr4_2:46583635-46583654 Msa0602710:intron 35.0%
AACTCGCAAACAAAACCTAA+GGG + chr4_2:46583636-46583655 Msa0602710:intron 35.0%
!! AATTTTGGTGTGACACTTTG+TGG + chr4_2:46583930-46583949 Msa0602710:intron 35.0%
TTGGGAATCAGTATGTTTGT+AGG + chr4_2:46584117-46584136 Msa0602710:intron 35.0%
GTATGTTTGTAGGAAGACAT+TGG + chr4_2:46584127-46584146 Msa0602710:intron 35.0%
!!! CTTTCGCTTTTTAAGCATCT+TGG + chr4_2:46584535-46584554 Msa0602710:three_prime_UTR 35.0%
TAATGCTCCTCTGCATCAAT+CGG - chr4_2:46580221-46580240 None:intergenic 40.0%
! CATCATTCTTTTGCAGAGAG+TGG - chr4_2:46580248-46580267 None:intergenic 40.0%
GCTTGATCAAGAAAATGGTC+CGG + chr4_2:46580308-46580327 Msa0602710:CDS 40.0%
AAAAATTATTGGACGGTCCC+GGG - chr4_2:46580480-46580499 None:intergenic 40.0%
GAATCTAATGCAAGTAGGGA+TGG + chr4_2:46580551-46580570 Msa0602710:intron 40.0%
GAAAAAAGTTTGGTCTGACC+TGG - chr4_2:46580626-46580645 None:intergenic 40.0%
GCTTAGGCCTTCAAACAAAT+TGG + chr4_2:46581107-46581126 Msa0602710:intron 40.0%
AGTCCAAACCCTTGGATTTA+GGG - chr4_2:46581184-46581203 None:intergenic 40.0%
GTTTGGACTCCTCAGATATT+AGG + chr4_2:46581195-46581214 Msa0602710:intron 40.0%
! GTCTACAATTTTATCGCCGA+CGG + chr4_2:46581511-46581530 Msa0602710:intron 40.0%
GTTGTGCATAGTCTACTAGT+AGG + chr4_2:46581855-46581874 Msa0602710:intron 40.0%
GTCTCTTAGAAATCGTGGTT+GGG + chr4_2:46582159-46582178 Msa0602710:intron 40.0%
TGTGTGTGATGTTTCATGTC+GGG + chr4_2:46582594-46582613 Msa0602710:intron 40.0%
GGAGGGTTTGGAAAAAATGA+AGG - chr4_2:46583600-46583619 None:intergenic 40.0%
GATAAAAAGAAGGGAGGGTT+TGG - chr4_2:46583612-46583631 None:intergenic 40.0%
CATTCATTGGAGTTTCCCTT+AGG - chr4_2:46583654-46583673 None:intergenic 40.0%
CTAAGGGAAACTCCAATGAA+TGG + chr4_2:46583652-46583671 Msa0602710:intron 40.0%
!! ATATGGCTCCATTGATTTGG+TGG - chr4_2:46584212-46584231 None:intergenic 40.0%
TGGAGAGGAATTAGAAGATG+AGG + chr4_2:46584241-46584260 Msa0602710:CDS 40.0%
AAGATGAGGAAGAAGAGAAC+TGG + chr4_2:46584255-46584274 Msa0602710:CDS 40.0%
AGATGAGGAAGAAGAGAACT+GGG + chr4_2:46584256-46584275 Msa0602710:CDS 40.0%
! TCATGAGCAAGATTTGGAGT+AGG - chr4_2:46584305-46584324 None:intergenic 40.0%
ACAAAGTAGAAAAAGGGCGG+TGG - chr4_2:46580278-46580297 None:intergenic 45.0%
ATCAAGAAAATGGTCCGGTG+CGG + chr4_2:46580313-46580332 Msa0602710:CDS 45.0%
!! CAGTACTGGTGATCTTGATC+AGG + chr4_2:46580344-46580363 Msa0602710:CDS 45.0%
AGCTAGACATCCGTTTGTAG+AGG + chr4_2:46580442-46580461 Msa0602710:intron 45.0%
CGAATCTACGCCTCTACAAA+CGG - chr4_2:46580455-46580474 None:intergenic 45.0%
ATGCAAGTAGGGATGGGAAT+AGG + chr4_2:46580558-46580577 Msa0602710:intron 45.0%
CTTAAATAGGTCGGCCTAAG+AGG - chr4_2:46580723-46580742 None:intergenic 45.0%
! GACCTTCTGAAAGCCTGATA+CGG - chr4_2:46581043-46581062 None:intergenic 45.0%
TTTGTTTGAAGGCCTAAGCC+TGG - chr4_2:46581106-46581125 None:intergenic 45.0%
AGGCCTTCAAACAAATTGGC+AGG + chr4_2:46581111-46581130 Msa0602710:intron 45.0%
! TGGCCTGCCAATTTGTTTGA+AGG - chr4_2:46581117-46581136 None:intergenic 45.0%
TTCAAACAAATTGGCAGGCC+AGG + chr4_2:46581116-46581135 Msa0602710:intron 45.0%
TTGGATTTAGGGGTGGGAAT+AGG - chr4_2:46581173-46581192 None:intergenic 45.0%
TATTCCCACCCCTAAATCCA+AGG + chr4_2:46581172-46581191 Msa0602710:intron 45.0%
ATTCCCACCCCTAAATCCAA+GGG + chr4_2:46581173-46581192 Msa0602710:intron 45.0%
AAACCCTTGGATTTAGGGGT+GGG - chr4_2:46581179-46581198 None:intergenic 45.0%
GTCCAAACCCTTGGATTTAG+GGG - chr4_2:46581183-46581202 None:intergenic 45.0%
GAGTCCAAACCCTTGGATTT+AGG - chr4_2:46581185-46581204 None:intergenic 45.0%
GAGACGTCTCTTAGAAATCG+TGG + chr4_2:46582154-46582173 Msa0602710:intron 45.0%
CGTCTCTTAGAAATCGTGGT+TGG + chr4_2:46582158-46582177 Msa0602710:intron 45.0%
CTAACACAACCCCACAAAAC+CGG + chr4_2:46582183-46582202 Msa0602710:intron 45.0%
CACCATCTCATATCCGATGT+AGG + chr4_2:46582248-46582267 Msa0602710:intron 45.0%
GTCCTACATCGGATATGAGA+TGG - chr4_2:46582253-46582272 None:intergenic 45.0%
!! TAATGGAGTAATGGACACCC+TGG + chr4_2:46582302-46582321 Msa0602710:intron 45.0%
GTGTGTGATGTTTCATGTCG+GGG + chr4_2:46582595-46582614 Msa0602710:intron 45.0%
TGTGTGATGTTTCATGTCGG+GGG + chr4_2:46582596-46582615 Msa0602710:intron 45.0%
! TTCTTTTCCTCTGGGCTGTA+AGG - chr4_2:46582973-46582992 None:intergenic 45.0%
TTACAGCCCAGAGGAAAAGA+AGG + chr4_2:46582972-46582991 Msa0602710:CDS 45.0%
! TCCTCACCTTCTTTTCCTCT+GGG - chr4_2:46582981-46583000 None:intergenic 45.0%
! ATCCTCACCTTCTTTTCCTC+TGG - chr4_2:46582982-46583001 None:intergenic 45.0%
TTTCTCGGAAGCCCCTAATA+TGG - chr4_2:46583328-46583347 None:intergenic 45.0%
TTTGCATGGTAGAGTCTTGC+AGG + chr4_2:46583878-46583897 Msa0602710:intron 45.0%
ACAGTAGGCCACGTATTAGA+GGG + chr4_2:46584153-46584172 Msa0602710:CDS 45.0%
GCAAATCTCCCTCTAATACG+TGG - chr4_2:46584164-46584183 None:intergenic 45.0%
GACTCGTCATGAGCAAGATT+TGG - chr4_2:46584311-46584330 None:intergenic 45.0%
! TGGTTGTGCTGCTGCATATC+AGG - chr4_2:46580093-46580112 None:intergenic 50.0%
CGGATGTCTAGCTGATGAGA+TGG - chr4_2:46580435-46580454 None:intergenic 50.0%
! TAGAGGCGTAGATTCGAACC+CGG + chr4_2:46580459-46580478 Msa0602710:intron 50.0%
AGACCTTGCAAAGCCTAGCT+CGG + chr4_2:46581142-46581161 Msa0602710:intron 50.0%
TTTAGGGGTGGGAATAGGCT+AGG - chr4_2:46581168-46581187 None:intergenic 50.0%
CAAACCCTTGGATTTAGGGG+TGG - chr4_2:46581180-46581199 None:intergenic 50.0%
CACCCCTAAATCCAAGGGTT+TGG + chr4_2:46581178-46581197 Msa0602710:intron 50.0%
ATCTGAGGAGTCCAAACCCT+TGG - chr4_2:46581192-46581211 None:intergenic 50.0%
!!! ACCTCACATGCCGGTTTTGT+GGG - chr4_2:46582196-46582215 None:intergenic 50.0%
CCATAACTTAGAGGTCTCGC+CGG - chr4_2:46583205-46583224 None:intergenic 50.0%
TAGGGGCTTCCGAGAAATAC+AGG + chr4_2:46583331-46583350 Msa0602710:intron 50.0%
AGGGGCTTCCGAGAAATACA+GGG + chr4_2:46583332-46583351 Msa0602710:intron 50.0%
GGAAGACATTGGCAGACAGT+AGG + chr4_2:46584138-46584157 Msa0602710:CDS 50.0%
GACAGTAGGCCACGTATTAG+AGG + chr4_2:46584152-46584171 Msa0602710:CDS 50.0%
ATGCAGCAGCACAACCACCT+CGG + chr4_2:46580096-46580115 Msa0602710:CDS 55.0%
CCACCTCGGTGAATACGAGT+CGG + chr4_2:46580110-46580129 Msa0602710:CDS 55.0%
CACCACCAGAGTTGAGCTGT+GGG - chr4_2:46580137-46580156 None:intergenic 55.0%
AGCGGCTGCACTAGCTACTT+GGG + chr4_2:46580186-46580205 Msa0602710:CDS 55.0%
CTCCTCTGCATCAATCGGTC+CGG - chr4_2:46580216-46580235 None:intergenic 55.0%
GTAGAAAAAGGGCGGTGGTG+TGG - chr4_2:46580273-46580292 None:intergenic 55.0%
GTACTGTAAACTCGCCGCAC+CGG - chr4_2:46580330-46580349 None:intergenic 55.0%
GTGCGGCGAGTTTACAGTAC+TGG + chr4_2:46580330-46580349 Msa0602710:CDS 55.0%
! AGAGGCGTAGATTCGAACCC+GGG + chr4_2:46580460-46580479 Msa0602710:intron 55.0%
AGTAGGGATGGGAATAGGCC+AGG + chr4_2:46580563-46580582 Msa0602710:intron 55.0%
GCTAGGCCATAGGCAACTGT+AGG - chr4_2:46580593-46580612 None:intergenic 55.0%
ACAGGTTAGCAGGCCGTATC+AGG + chr4_2:46581027-46581046 Msa0602710:intron 55.0%
GGCCGTATCAGGCTTTCAGA+AGG + chr4_2:46581038-46581057 Msa0602710:intron 55.0%
!!! CCTCACATGCCGGTTTTGTG+GGG - chr4_2:46582195-46582214 None:intergenic 55.0%
!!! CACCTCACATGCCGGTTTTG+TGG - chr4_2:46582197-46582216 None:intergenic 55.0%
CAAAACCGGCATGTGAGGTG+AGG + chr4_2:46582197-46582216 Msa0602710:intron 55.0%
GCAATCCTCACCTCACATGC+CGG - chr4_2:46582205-46582224 None:intergenic 55.0%
GAGTGTGGACATCGGTCTCA+AGG + chr4_2:46582420-46582439 Msa0602710:intron 55.0%
TTCCTCTGGGCTGTAAGGAC+TGG - chr4_2:46582968-46582987 None:intergenic 55.0%
GCCCAGAGGAAAAGAAGGTG+AGG + chr4_2:46582977-46582996 Msa0602710:intron 55.0%
CCGGCGAGACCTCTAAGTTA+TGG + chr4_2:46583202-46583221 Msa0602710:intron 55.0%
CTGCTGCATATCAGGCGTGG+TGG - chr4_2:46580085-46580104 None:intergenic 60.0%
! GTGCTGCTGCATATCAGGCG+TGG - chr4_2:46580088-46580107 None:intergenic 60.0%
! CCGACTCGTATTCACCGAGG+TGG - chr4_2:46580113-46580132 None:intergenic 60.0%
!! GGACCGACTCGTATTCACCG+AGG - chr4_2:46580116-46580135 None:intergenic 60.0%
TCGGTCCCACAGCTCAACTC+TGG + chr4_2:46580129-46580148 Msa0602710:intron 60.0%
GTCCCACAGCTCAACTCTGG+TGG + chr4_2:46580132-46580151 Msa0602710:intron 60.0%
CCACCACCAGAGTTGAGCTG+TGG - chr4_2:46580138-46580157 None:intergenic 60.0%
CCACAGCTCAACTCTGGTGG+TGG + chr4_2:46580135-46580154 Msa0602710:intron 60.0%
!! CAGCTCAACTCTGGTGGTGG+TGG + chr4_2:46580138-46580157 Msa0602710:intron 60.0%
!! CTCAACTCTGGTGGTGGTGG+TGG + chr4_2:46580141-46580160 Msa0602710:CDS 60.0%
!! AACTCTGGTGGTGGTGGTGG+TGG + chr4_2:46580144-46580163 Msa0602710:CDS 60.0%
CAGCGGCTGCACTAGCTACT+TGG + chr4_2:46580185-46580204 Msa0602710:CDS 60.0%
GCGGCTGCACTAGCTACTTG+GGG + chr4_2:46580187-46580206 Msa0602710:CDS 60.0%
CACTAGCTACTTGGGGTCGC+CGG + chr4_2:46580194-46580213 Msa0602710:CDS 60.0%
GGCCATAGGCAACTGTAGGC+CGG - chr4_2:46580589-46580608 None:intergenic 60.0%
CCTGTCGTACGCTAGGCCAT+AGG - chr4_2:46580603-46580622 None:intergenic 60.0%
CCTATGGCCTAGCGTACGAC+AGG + chr4_2:46580600-46580619 Msa0602710:intron 60.0%
CTTATGAAAGGCCGCACGCC+AGG + chr4_2:46581085-46581104 Msa0602710:intron 60.0%
GGCTTTGCAAGGTCTGAGCC+TGG - chr4_2:46581137-46581156 None:intergenic 60.0%
AGGCCGAGCTAGGCTTTGCA+AGG - chr4_2:46581148-46581167 None:intergenic 60.0%
GGAATAGGCTAGGCCGAGCT+AGG - chr4_2:46581158-46581177 None:intergenic 60.0%
CCCCACAAAACCGGCATGTG+AGG + chr4_2:46582192-46582211 Msa0602710:intron 60.0%
AGCCAGTCCTTACAGCCCAG+AGG + chr4_2:46582963-46582982 Msa0602710:CDS 60.0%
CGCCGGACCGATTGATGCAG+AGG + chr4_2:46580211-46580230 Msa0602710:CDS 65.0%
GGGATGGGAATAGGCCAGGC+CGG + chr4_2:46580567-46580586 Msa0602710:intron 65.0%
TAGGCAACTGTAGGCCGGCC+TGG - chr4_2:46580584-46580603 None:intergenic 65.0%
GGCCGGCCTACAGTTGCCTA+TGG + chr4_2:46580584-46580603 Msa0602710:intron 65.0%
GACCTGGCCTGTCGTACGCT+AGG - chr4_2:46580610-46580629 None:intergenic 65.0%
AAAGGCCGCACGCCAGGCTT+AGG + chr4_2:46581091-46581110 Msa0602710:intron 65.0%
GAAGGCCTAAGCCTGGCGTG+CGG - chr4_2:46581099-46581118 None:intergenic 65.0%
GGCCTAGCGTACGACAGGCC+AGG + chr4_2:46580605-46580624 Msa0602710:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 46580054 46584573 46580054 ID=Msa0602710;Name=Msa0602710
chr4_2 mRNA 46580054 46584573 46580054 ID=Msa0602710-mRNA-1;Parent=Msa0602710;Name=Msa0602710-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.33|0.25|1|0.33|0.25|4|209|200
chr4_2 exon 46580054 46580131 46580054 ID=Msa0602710-mRNA-1:exon:10601;Parent=Msa0602710-mRNA-1
chr4_2 exon 46580141 46580365 46580141 ID=Msa0602710-mRNA-1:exon:10602;Parent=Msa0602710-mRNA-1
chr4_2 exon 46582931 46582993 46582931 ID=Msa0602710-mRNA-1:exon:10603;Parent=Msa0602710-mRNA-1
chr4_2 exon 46584128 46584573 46584128 ID=Msa0602710-mRNA-1:exon:10604;Parent=Msa0602710-mRNA-1
chr4_2 CDS 46580054 46580131 46580054 ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1
chr4_2 CDS 46580141 46580365 46580141 ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1
chr4_2 CDS 46582931 46582993 46582931 ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1
chr4_2 CDS 46584128 46584364 46584128 ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1
chr4_2 three_prime_UTR 46584365 46584573 46584365 ID=Msa0602710-mRNA-1:three_prime_utr;Parent=Msa0602710-mRNA-1
Gene Sequence

>Msa0602710

ATGTATACAAACTTCAACATCACATTCTCCACCACGCCTGATATGCAGCAGCACAACCACCTCGGTGAATACGAGTCGCTCAACTCTGGTGGTGGTGGTGGTGGAAATTATAATAGCTGTAGCAGCGGCTGCACTAGCTACTTGGGGTCGCCGGACCGATTGATGCAGAGGAGCATTAGTAGCCACTCTCTGCAAAAGAATGATGTGCCACACCACCGCCCTTTTTCTACTTTGTTTGCTGAATTGCTTGATCAAGAAAATGGTCCGGTGCGGCGAGTTTACAGTACTGGTGATCTTGATCAGAGTAACATGATCATAGAAGAAATGAGCAGAGCAGCCAGTCCTTACAGCCCAGAGGAAAAGAAGTATGTTTGTAGGAAGACATTGGCAGACAGTAGGCCACGTATTAGAGGGAGATTTGCTAAGAATGATGAAATTGTAATGAATCCACCAAATCAATGGAGCCATATTAATAATGATGGAGAGGAATTAGAAGATGAGGAAGAAGAGAACTGGGACAGTTTATTTGATACATTGGTTCCTACTCCAAATCTTGCTCATGACGAGTCTCCCCATAATTCCTCATATAGTGTCTTGTATTAA

Protein sequence

>Msa0602710

MYTNFNITFSTTPDMQQHNHLGEYESLNSGGGGGGNYNSCSSGCTSYLGSPDRLMQRSISSHSLQKNDVPHHRPFSTLFAELLDQENGPVRRVYSTGDLDQSNMIIEEMSRAASPYSPEEKKYVCRKTLADSRPRIRGRFAKNDEIVMNPPNQWSHINNDGEELEDEEEENWDSLFDTLVPTPNLAHDESPHNSSYSVLY*