AlfalfaGEDB | Msa0602710

M. sativa cultivar zhongmu-4 / Msa0602710

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF06203.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602710	XP_039689728.1	82.589	224	13	5	1	200	1	222	3.76e-109	322

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0602710	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602710	MtrunA17_Chr4g0030411	87.500	112	9	2	1	107	1	112	2.81e-65	197
Msa0602710	MtrunA17_Chr4g0030421	73.333	120	10	3	101	200	15	132	2.21e-44	144
Msa0602710	MtrunA17_Chr2g0327621	41.296	247	89	7	6	200	9	251	1.10e-42	143
Msa0602710	MtrunA17_Chr8g0387241	39.231	130	41	7	53	145	141	269	3.31e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602710	AT5G59990.1	35.976	164	56	7	49	179	87	234	5.24e-17	77.0
Msa0602710	AT5G41380.1	35.912	181	61	8	34	172	107	274	9.31e-16	74.3

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Find 54 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATGAGGAAGAAGAGAAC+TGG	0.411030	4_2:+46584255	Msa0602710:CDS
AATTATAATAGCTGTAGCAG+CGG	0.664085	4_2:+46580168	Msa0602710:CDS
ACACTATATGAGGAATTATG+GGG	0.665187	4_2:-46584332	None:intergenic
ACAGTAGGCCACGTATTAGA+GGG	0.598648	4_2:+46584153	Msa0602710:CDS
AGACACTATATGAGGAATTA+TGG	0.234337	4_2:-46584334	None:intergenic
AGATGAGGAAGAAGAGAACT+GGG	0.574947	4_2:+46584256	Msa0602710:CDS
AGCCAGTCCTTACAGCCCAG+AGG	0.687171	4_2:+46582963	Msa0602710:CDS
AGCGGCTGCACTAGCTACTT+GGG	0.456423	4_2:+46580186	Msa0602710:CDS
ATATGGCTCCATTGATTTGG+TGG	0.458606	4_2:-46584209	None:intergenic
ATCAAGAAAATGGTCCGGTG+CGG	0.695020	4_2:+46580313	Msa0602710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTATAATAGCTGTAGCAG+CGG	+	chr4_2:46580168-46580187	Msa0602710:CDS	30.0%
CAGCAAACAAAGTAGAAAAA+GGG	-	chr4_2:46580284-46580303	None:intergenic	30.0%
TCAGCAAACAAAGTAGAAAA+AGG	-	chr4_2:46580285-46580304	None:intergenic	30.0%
GAATTGCTTGATCAAGAAAA+TGG	+	chr4_2:46580303-46580322	Msa0602710:CDS	30.0%
ATGTTGAATCTAATGCAAGT+AGG	+	chr4_2:46580546-46580565	Msa0602710:intron	30.0%
TGTTGAATCTAATGCAAGTA+GGG	+	chr4_2:46580547-46580566	Msa0602710:intron	30.0%
TATCATTCAAAAAGCCTCTT+AGG	+	chr4_2:46580706-46580725	Msa0602710:intron	30.0%
AACACGTTTAAATTCCAAGT+TGG	+	chr4_2:46581218-46581237	Msa0602710:intron	30.0%
TAATATGGAGGTTAAAATCG+TGG	-	chr4_2:46581283-46581302	None:intergenic	30.0%
ACCTCCATATTAACAAAATC+CGG	+	chr4_2:46581291-46581310	Msa0602710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	46580054	46584573	46580054	ID=Msa0602710;Name=Msa0602710
chr4_2	mRNA	46580054	46584573	46580054	ID=Msa0602710-mRNA-1;Parent=Msa0602710;Name=Msa0602710-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|0.33\|0.25\|1\|0.33\|0.25\|4\|209\|200
chr4_2	exon	46580054	46580131	46580054	ID=Msa0602710-mRNA-1:exon:10601;Parent=Msa0602710-mRNA-1
chr4_2	exon	46580141	46580365	46580141	ID=Msa0602710-mRNA-1:exon:10602;Parent=Msa0602710-mRNA-1
chr4_2	exon	46582931	46582993	46582931	ID=Msa0602710-mRNA-1:exon:10603;Parent=Msa0602710-mRNA-1
chr4_2	exon	46584128	46584573	46584128	ID=Msa0602710-mRNA-1:exon:10604;Parent=Msa0602710-mRNA-1
chr4_2	CDS	46580054	46580131	46580054	ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1
chr4_2	CDS	46580141	46580365	46580141	ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1
chr4_2	CDS	46582931	46582993	46582931	ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1
chr4_2	CDS	46584128	46584364	46584128	ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1
chr4_2	three_prime_UTR	46584365	46584573	46584365	ID=Msa0602710-mRNA-1:three_prime_utr;Parent=Msa0602710-mRNA-1

Gene Sequence

>Msa0602710

ATGTATACAAACTTCAACATCACATTCTCCACCACGCCTGATATGCAGCAGCACAACCACCTCGGTGAATACGAGTCGCTCAACTCTGGTGGTGGTGGTGGTGGAAATTATAATAGCTGTAGCAGCGGCTGCACTAGCTACTTGGGGTCGCCGGACCGATTGATGCAGAGGAGCATTAGTAGCCACTCTCTGCAAAAGAATGATGTGCCACACCACCGCCCTTTTTCTACTTTGTTTGCTGAATTGCTTGATCAAGAAAATGGTCCGGTGCGGCGAGTTTACAGTACTGGTGATCTTGATCAGAGTAACATGATCATAGAAGAAATGAGCAGAGCAGCCAGTCCTTACAGCCCAGAGGAAAAGAAGTATGTTTGTAGGAAGACATTGGCAGACAGTAGGCCACGTATTAGAGGGAGATTTGCTAAGAATGATGAAATTGTAATGAATCCACCAAATCAATGGAGCCATATTAATAATGATGGAGAGGAATTAGAAGATGAGGAAGAAGAGAACTGGGACAGTTTATTTGATACATTGGTTCCTACTCCAAATCTTGCTCATGACGAGTCTCCCCATAATTCCTCATATAGTGTCTTGTATTAA

Protein sequence

>Msa0602710

MYTNFNITFSTTPDMQQHNHLGEYESLNSGGGGGGNYNSCSSGCTSYLGSPDRLMQRSISSHSLQKNDVPHHRPFSTLFAELLDQENGPVRRVYSTGDLDQSNMIIEEMSRAASPYSPEEKKYVCRKTLADSRPRIRGRFAKNDEIVMNPPNQWSHINNDGEELEDEEEENWDSLFDTLVPTPNLAHDESPHNSSYSVLY*