Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0602710 | XP_039689728.1 | 82.589 | 224 | 13 | 5 | 1 | 200 | 1 | 222 | 3.76e-109 | 322 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0602710 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0602710 | MtrunA17_Chr4g0030411 | 87.500 | 112 | 9 | 2 | 1 | 107 | 1 | 112 | 2.81e-65 | 197 |
Msa0602710 | MtrunA17_Chr4g0030421 | 73.333 | 120 | 10 | 3 | 101 | 200 | 15 | 132 | 2.21e-44 | 144 |
Msa0602710 | MtrunA17_Chr2g0327621 | 41.296 | 247 | 89 | 7 | 6 | 200 | 9 | 251 | 1.10e-42 | 143 |
Msa0602710 | MtrunA17_Chr8g0387241 | 39.231 | 130 | 41 | 7 | 53 | 145 | 141 | 269 | 3.31e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0602710 | AT5G59990.1 | 35.976 | 164 | 56 | 7 | 49 | 179 | 87 | 234 | 5.24e-17 | 77.0 |
Msa0602710 | AT5G41380.1 | 35.912 | 181 | 61 | 8 | 34 | 172 | 107 | 274 | 9.31e-16 | 74.3 |
Find 54 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTTAATTAAGTATAAATT+TGG | 0.158626 | 4_2:+46584379 | Msa0602710:three_prime_UTR |
CCTCTCCATCATTATTAATA+TGG | 0.215056 | 4_2:-46584226 | None:intergenic |
TCAGCAAACAAAGTAGAAAA+AGG | 0.225080 | 4_2:-46580282 | None:intergenic |
AGACACTATATGAGGAATTA+TGG | 0.234337 | 4_2:-46584334 | None:intergenic |
TTAATATGGCTCCATTGATT+TGG | 0.330401 | 4_2:-46584212 | None:intergenic |
TGGTTGTGCTGCTGCATATC+AGG | 0.351829 | 4_2:-46580090 | None:intergenic |
GAATTGCTTGATCAAGAAAA+TGG | 0.366594 | 4_2:+46580303 | Msa0602710:CDS |
GACTCGTCATGAGCAAGATT+TGG | 0.366759 | 4_2:-46584308 | None:intergenic |
GACACTATATGAGGAATTAT+GGG | 0.370530 | 4_2:-46584333 | None:intergenic |
CAGCGGCTGCACTAGCTACT+TGG | 0.382126 | 4_2:+46580185 | Msa0602710:CDS |
TTCCTCTGGGCTGTAAGGAC+TGG | 0.386798 | 4_2:-46582965 | None:intergenic |
GACAGTAGGCCACGTATTAG+AGG | 0.396649 | 4_2:+46584152 | Msa0602710:CDS |
CTCAACTCTGGTGGTGGTGG+TGG | 0.402700 | 4_2:+46580141 | Msa0602710:CDS |
AAGATGAGGAAGAAGAGAAC+TGG | 0.411030 | 4_2:+46584255 | Msa0602710:CDS |
CAGTACTGGTGATCTTGATC+AGG | 0.424707 | 4_2:+46580344 | Msa0602710:CDS |
TTGGGAATCAGTATGTTTGT+AGG | 0.430394 | 4_2:+46584117 | Msa0602710:intron |
CAGCTCAACTCTGGTGGTGG+TGG | 0.445463 | 4_2:+46580138 | Msa0602710:intron |
AGCGGCTGCACTAGCTACTT+GGG | 0.456423 | 4_2:+46580186 | Msa0602710:CDS |
ATATGGCTCCATTGATTTGG+TGG | 0.458606 | 4_2:-46584209 | None:intergenic |
TGGAGCCATATTAATAATGA+TGG | 0.462252 | 4_2:+46584221 | Msa0602710:CDS |
TAATGAATCCACCAAATCAA+TGG | 0.463510 | 4_2:+46584201 | Msa0602710:CDS |
TTAATACAAGACACTATATG+AGG | 0.478126 | 4_2:-46584342 | None:intergenic |
CACTAGCTACTTGGGGTCGC+CGG | 0.492708 | 4_2:+46580194 | Msa0602710:CDS |
GGACAGTTTATTTGATACAT+TGG | 0.495314 | 4_2:+46584277 | Msa0602710:CDS |
CCACAGCTCAACTCTGGTGG+TGG | 0.501156 | 4_2:+46580135 | Msa0602710:intron |
TAATGCTCCTCTGCATCAAT+CGG | 0.513230 | 4_2:-46580218 | None:intergenic |
TGGAGAGGAATTAGAAGATG+AGG | 0.517815 | 4_2:+46584241 | Msa0602710:CDS |
GTGCGGCGAGTTTACAGTAC+TGG | 0.524680 | 4_2:+46580330 | Msa0602710:CDS |
TCGGTCCCACAGCTCAACTC+TGG | 0.546806 | 4_2:+46580129 | Msa0602710:intron |
CTCCTCTGCATCAATCGGTC+CGG | 0.559465 | 4_2:-46580213 | None:intergenic |
GTACTGTAAACTCGCCGCAC+CGG | 0.574327 | 4_2:-46580327 | None:intergenic |
AGATGAGGAAGAAGAGAACT+GGG | 0.574947 | 4_2:+46584256 | Msa0602710:CDS |
GCTTGATCAAGAAAATGGTC+CGG | 0.575893 | 4_2:+46580308 | Msa0602710:CDS |
CGCCGGACCGATTGATGCAG+AGG | 0.577048 | 4_2:+46580211 | Msa0602710:CDS |
GCGGCTGCACTAGCTACTTG+GGG | 0.584032 | 4_2:+46580187 | Msa0602710:CDS |
TTACAGCCCAGAGGAAAAGA+AGG | 0.592097 | 4_2:+46582972 | Msa0602710:CDS |
ACAGTAGGCCACGTATTAGA+GGG | 0.598648 | 4_2:+46584153 | Msa0602710:CDS |
GTCCCACAGCTCAACTCTGG+TGG | 0.604461 | 4_2:+46580132 | Msa0602710:intron |
GTATGTTTGTAGGAAGACAT+TGG | 0.609319 | 4_2:+46584127 | Msa0602710:intron |
GTATATTTAACAAATTACAA+TGG | 0.616526 | 4_2:+46584458 | Msa0602710:three_prime_UTR |
GGAAGACATTGGCAGACAGT+AGG | 0.616987 | 4_2:+46584138 | Msa0602710:CDS |
TCATGAGCAAGATTTGGAGT+AGG | 0.623530 | 4_2:-46584302 | None:intergenic |
CCATATTAATAATGATGGAG+AGG | 0.627865 | 4_2:+46584226 | Msa0602710:CDS |
CTGCTGCATATCAGGCGTGG+TGG | 0.663548 | 4_2:-46580082 | None:intergenic |
AATTATAATAGCTGTAGCAG+CGG | 0.664085 | 4_2:+46580168 | Msa0602710:CDS |
ACACTATATGAGGAATTATG+GGG | 0.665187 | 4_2:-46584332 | None:intergenic |
ATGCAGCAGCACAACCACCT+CGG | 0.675442 | 4_2:+46580096 | Msa0602710:CDS |
AGCCAGTCCTTACAGCCCAG+AGG | 0.687171 | 4_2:+46582963 | Msa0602710:CDS |
GTGCTGCTGCATATCAGGCG+TGG | 0.690874 | 4_2:-46580085 | None:intergenic |
ATCAAGAAAATGGTCCGGTG+CGG | 0.695020 | 4_2:+46580313 | Msa0602710:CDS |
GCAAATCTCCCTCTAATACG+TGG | 0.703686 | 4_2:-46584161 | None:intergenic |
CCACCTCGGTGAATACGAGT+CGG | 0.716126 | 4_2:+46580110 | Msa0602710:CDS |
CCGACTCGTATTCACCGAGG+TGG | 0.729716 | 4_2:-46580110 | None:intergenic |
GGACCGACTCGTATTCACCG+AGG | 0.797146 | 4_2:-46580113 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTAATAAATAT+CGG | - | chr4_2:46583138-46583157 | None:intergenic | 0.0% |
!!! | AATTATTGTTCTTTTTTTTT+TGG | - | chr4_2:46580514-46580533 | None:intergenic | 10.0% |
!! | TTATTCATATTTACTTAAAT+AGG | - | chr4_2:46580736-46580755 | None:intergenic | 10.0% |
!!! | ACTTCAATTTTTTTTTTTAT+AGG | + | chr4_2:46581815-46581834 | Msa0602710:intron | 10.0% |
!!! | ATATTATTTATATGATTTTC+AGG | - | chr4_2:46582467-46582486 | None:intergenic | 10.0% |
!!! | TTTAAGTTTTAAAACAATAT+TGG | - | chr4_2:46583171-46583190 | None:intergenic | 10.0% |
!!! | TTTAAAACTTAAATAGTATA+TGG | + | chr4_2:46583178-46583197 | Msa0602710:intron | 10.0% |
!! | TGTTTAATTAAGTATAAATT+TGG | + | chr4_2:46584379-46584398 | Msa0602710:three_prime_UTR | 10.0% |
!! | GTCATTATTATATAAAAAAG+TGG | - | chr4_2:46580404-46580423 | None:intergenic | 15.0% |
!! | CAAAGTAGTATAAAAATTAT+TGG | - | chr4_2:46580491-46580510 | None:intergenic | 15.0% |
!! | TATAAACTAGAATTGAAATA+TGG | + | chr4_2:46580875-46580894 | Msa0602710:intron | 15.0% |
!! | ATAAAATAAGATGTAAAATG+AGG | - | chr4_2:46582037-46582056 | None:intergenic | 15.0% |
!!! | AAAATCTATATCACTTTTTA+TGG | + | chr4_2:46582083-46582102 | Msa0602710:intron | 15.0% |
!! | AAAATGTATGTATTAAAATG+AGG | - | chr4_2:46583092-46583111 | None:intergenic | 15.0% |
!! | TTAAGAATATTATAACAACA+TGG | + | chr4_2:46583426-46583445 | Msa0602710:intron | 15.0% |
!!! | GTTTATTTTTGAAAAAACTA+GGG | - | chr4_2:46583777-46583796 | None:intergenic | 15.0% |
!!! | AGTTTATTTTTGAAAAAACT+AGG | - | chr4_2:46583778-46583797 | None:intergenic | 15.0% |
!!! | TCAAATTGTAACTATAATTT+TGG | + | chr4_2:46583915-46583934 | Msa0602710:intron | 15.0% |
!! | GTATATTTAACAAATTACAA+TGG | + | chr4_2:46584458-46584477 | Msa0602710:three_prime_UTR | 15.0% |
!!! | TATAAAAAAGTGGATTTTAG+AGG | - | chr4_2:46580394-46580413 | None:intergenic | 20.0% |
!! | GTAGTATAAAAATTATTGGA+CGG | - | chr4_2:46580487-46580506 | None:intergenic | 20.0% |
!! | CTCTATTTAAGAAAAAAGTT+TGG | - | chr4_2:46580636-46580655 | None:intergenic | 20.0% |
!! | TCATATTTACTTAAATAGGT+CGG | - | chr4_2:46580732-46580751 | None:intergenic | 20.0% |
!!! | GATGAAATAAACTTTTAAAC+AGG | + | chr4_2:46581009-46581028 | Msa0602710:intron | 20.0% |
!!! | TTTTTATTGGTCAAAAACAA+TGG | + | chr4_2:46581664-46581683 | Msa0602710:intron | 20.0% |
!!! | AATCATTTTTTGACAACTTT+TGG | - | chr4_2:46581749-46581768 | None:intergenic | 20.0% |
!!! | CATGAGTTTATTTTTTTCAA+TGG | - | chr4_2:46581924-46581943 | None:intergenic | 20.0% |
!!! | TAAACTCATGTTTTTTTTAG+AGG | + | chr4_2:46581934-46581953 | Msa0602710:intron | 20.0% |
!! | ATTGTCACAAAAGATAATAA+AGG | - | chr4_2:46582667-46582686 | None:intergenic | 20.0% |
!! | GAACTACAATAAGAAAATTA+AGG | + | chr4_2:46583032-46583051 | Msa0602710:intron | 20.0% |
!!! | TTTTAAAATTGTCTACGATT+CGG | - | chr4_2:46583286-46583305 | None:intergenic | 20.0% |
!! | TTTATTGAATGACCATATTA+GGG | + | chr4_2:46583313-46583332 | Msa0602710:intron | 20.0% |
!! | ATATAAAACCCTCATTATTT+GGG | - | chr4_2:46583514-46583533 | None:intergenic | 20.0% |
!! | AATATAAAACCCTCATTATT+TGG | - | chr4_2:46583515-46583534 | None:intergenic | 20.0% |
!!! | TTTTCAAAAATAAACTGAAG+TGG | + | chr4_2:46583782-46583801 | Msa0602710:intron | 20.0% |
!! | TGAAGAATGAAAATTAGAAT+TGG | + | chr4_2:46583831-46583850 | Msa0602710:intron | 20.0% |
!!! | TATTCTTTTGATTTTTTGCA+TGG | + | chr4_2:46583864-46583883 | Msa0602710:intron | 20.0% |
!!! | ATCTTAGTTTTGTTTTCTTT+TGG | + | chr4_2:46584098-46584117 | Msa0602710:intron | 20.0% |
!!! | TCTTAGTTTTGTTTTCTTTT+GGG | + | chr4_2:46584099-46584118 | Msa0602710:intron | 20.0% |
! | TAGAGGAAGAATATTGTAAA+CGG | - | chr4_2:46580377-46580396 | None:intergenic | 25.0% |
! | TTCTTAAATAGAGAAGACTT+AGG | + | chr4_2:46580643-46580662 | Msa0602710:intron | 25.0% |
!!! | CTTTCATAAGCTTACTTTTT+AGG | - | chr4_2:46581075-46581094 | None:intergenic | 25.0% |
! | CTAAAAAGTAAGCTTATGAA+AGG | + | chr4_2:46581073-46581092 | Msa0602710:intron | 25.0% |
!!! | GAGTCATTTTTCATTTATGT+AGG | + | chr4_2:46581242-46581261 | Msa0602710:intron | 25.0% |
! | AAAAAAAGCGATGATGAAAT+GGG | - | chr4_2:46581356-46581375 | None:intergenic | 25.0% |
! | AAAAAAAAGCGATGATGAAA+TGG | - | chr4_2:46581357-46581376 | None:intergenic | 25.0% |
! | CTAATTCTTGTCTACAAAAT+TGG | - | chr4_2:46581396-46581415 | None:intergenic | 25.0% |
!! | TTTTGTAGACAAGAATTAGA+TGG | + | chr4_2:46581397-46581416 | Msa0602710:intron | 25.0% |
! | TTCTTTCTTCTTAAACAACT+AGG | + | chr4_2:46581424-46581443 | Msa0602710:intron | 25.0% |
!! | TGTGTTGATATTTCAAATTG+AGG | + | chr4_2:46581584-46581603 | Msa0602710:intron | 25.0% |
!!! | ATGATATTTTGACATCCATT+TGG | + | chr4_2:46581608-46581627 | Msa0602710:intron | 25.0% |
! | TCAATAAAGTTGTTACCAAA+TGG | - | chr4_2:46581626-46581645 | None:intergenic | 25.0% |
!!! | TTGTTCTTCTCACTTTTTAT+TGG | + | chr4_2:46581651-46581670 | Msa0602710:intron | 25.0% |
! | AGATACTTATTAGATCAGTT+TGG | - | chr4_2:46582009-46582028 | None:intergenic | 25.0% |
! | ACTCCATTAAAGAAAATGTT+TGG | - | chr4_2:46582291-46582310 | None:intergenic | 25.0% |
!! | CATTTTCTTTAATGGAGTAA+TGG | + | chr4_2:46582293-46582312 | Msa0602710:intron | 25.0% |
!!! | ATGTCTTTTATTTTCTTCCA+GGG | - | chr4_2:46582322-46582341 | None:intergenic | 25.0% |
!!! | AATGTCTTTTATTTTCTTCC+AGG | - | chr4_2:46582323-46582342 | None:intergenic | 25.0% |
! | AACTTAAATAGTATATGGTC+CGG | + | chr4_2:46583183-46583202 | Msa0602710:intron | 25.0% |
! | CTACTTTAAACAATTTAAGC+TGG | + | chr4_2:46583230-46583249 | Msa0602710:intron | 25.0% |
! | GTTTATTGAATGACCATATT+AGG | + | chr4_2:46583312-46583331 | Msa0602710:intron | 25.0% |
! | TTATTGAATGACCATATTAG+GGG | + | chr4_2:46583314-46583333 | Msa0602710:intron | 25.0% |
! | TATAAAACCCTCATTATTTG+GGG | - | chr4_2:46583513-46583532 | None:intergenic | 25.0% |
!! | ACAAAATTTTCTCCATTCAT+TGG | - | chr4_2:46583667-46583686 | None:intergenic | 25.0% |
!! | CATCTAAGATTGAAAGTAAA+TGG | + | chr4_2:46583729-46583748 | Msa0602710:intron | 25.0% |
! | AAATGGAAACAGTAAAAAGT+TGG | + | chr4_2:46583746-46583765 | Msa0602710:intron | 25.0% |
!! | ACAATTTGATATTTTCTGTG+TGG | - | chr4_2:46583904-46583923 | None:intergenic | 25.0% |
!!! | GATTTGTTACTGTACATTAT+TGG | - | chr4_2:46584049-46584068 | None:intergenic | 25.0% |
! | TTAATACAAGACACTATATG+AGG | - | chr4_2:46584345-46584364 | None:intergenic | 25.0% |
AATTATAATAGCTGTAGCAG+CGG | + | chr4_2:46580168-46580187 | Msa0602710:CDS | 30.0% | |
CAGCAAACAAAGTAGAAAAA+GGG | - | chr4_2:46580284-46580303 | None:intergenic | 30.0% | |
TCAGCAAACAAAGTAGAAAA+AGG | - | chr4_2:46580285-46580304 | None:intergenic | 30.0% | |
GAATTGCTTGATCAAGAAAA+TGG | + | chr4_2:46580303-46580322 | Msa0602710:CDS | 30.0% | |
ATGTTGAATCTAATGCAAGT+AGG | + | chr4_2:46580546-46580565 | Msa0602710:intron | 30.0% | |
TGTTGAATCTAATGCAAGTA+GGG | + | chr4_2:46580547-46580566 | Msa0602710:intron | 30.0% | |
! | TTTTTGAATGATATGTGGCT+TGG | - | chr4_2:46580699-46580718 | None:intergenic | 30.0% |
TATCATTCAAAAAGCCTCTT+AGG | + | chr4_2:46580706-46580725 | Msa0602710:intron | 30.0% | |
! | AAACTTTTAAACAGGTTAGC+AGG | + | chr4_2:46581017-46581036 | Msa0602710:intron | 30.0% |
AACACGTTTAAATTCCAAGT+TGG | + | chr4_2:46581218-46581237 | Msa0602710:intron | 30.0% | |
TAATATGGAGGTTAAAATCG+TGG | - | chr4_2:46581283-46581302 | None:intergenic | 30.0% | |
ACCTCCATATTAACAAAATC+CGG | + | chr4_2:46581291-46581310 | Msa0602710:intron | 30.0% | |
!!! | ACACAATGATTTTAACTCTC+CGG | - | chr4_2:46581313-46581332 | None:intergenic | 30.0% |
AAAAAAGCGATGATGAAATG+GGG | - | chr4_2:46581355-46581374 | None:intergenic | 30.0% | |
TTCTTCTTAAACAACTAGGA+AGG | + | chr4_2:46581428-46581447 | Msa0602710:intron | 30.0% | |
AAAACAATGGAGAGAGAAAA+AGG | + | chr4_2:46581677-46581696 | Msa0602710:intron | 30.0% | |
!!! | TCATGTTTTTTTTAGAGGAG+TGG | + | chr4_2:46581939-46581958 | Msa0602710:intron | 30.0% |
AGGAGTTAACAAAAGATGAA+AGG | + | chr4_2:46581962-46581981 | Msa0602710:intron | 30.0% | |
GGAGTTAACAAAAGATGAAA+GGG | + | chr4_2:46581963-46581982 | Msa0602710:intron | 30.0% | |
CTTATTAGATCAGTTTGGAA+CGG | - | chr4_2:46582004-46582023 | None:intergenic | 30.0% | |
TGTGACAATGTGTTTATAAG+TGG | - | chr4_2:46582230-46582249 | None:intergenic | 30.0% | |
CCATTAAAGAAAATGTTTGG+TGG | - | chr4_2:46582288-46582307 | None:intergenic | 30.0% | |
! | CCACCAAACATTTTCTTTAA+TGG | + | chr4_2:46582285-46582304 | Msa0602710:intron | 30.0% |
CACTCAATGATATAAGATGT+AGG | - | chr4_2:46582405-46582424 | None:intergenic | 30.0% | |
ACATCTTATATCATTGAGTG+TGG | + | chr4_2:46582405-46582424 | Msa0602710:intron | 30.0% | |
CCATTAACTCTCTTTACATA+CGG | - | chr4_2:46582865-46582884 | None:intergenic | 30.0% | |
ATCAGATAGTCCTTTGTTAA+CGG | + | chr4_2:46582906-46582925 | Msa0602710:intron | 30.0% | |
! | CAATTTTTCCCTGTATTTCT+CGG | - | chr4_2:46583343-46583362 | None:intergenic | 30.0% |
GGGGAACTAAAAAATTGTAT+TGG | - | chr4_2:46583494-46583513 | None:intergenic | 30.0% | |
!!! | TTTTAGTTCCCCAAATAATG+AGG | + | chr4_2:46583502-46583521 | Msa0602710:intron | 30.0% |
! | TTTAGTTCCCCAAATAATGA+GGG | + | chr4_2:46583503-46583522 | Msa0602710:intron | 30.0% |
ATTGGAAGAGATAACTTTGA+GGG | - | chr4_2:46583554-46583573 | None:intergenic | 30.0% | |
GAGTTTGGAGATAAAAAGAA+GGG | - | chr4_2:46583621-46583640 | None:intergenic | 30.0% | |
! | ATGGAGAAAATTTTGTGAAG+AGG | + | chr4_2:46583671-46583690 | Msa0602710:intron | 30.0% |
TAATGAATCCACCAAATCAA+TGG | + | chr4_2:46584201-46584220 | Msa0602710:CDS | 30.0% | |
! | TTAATATGGCTCCATTGATT+TGG | - | chr4_2:46584215-46584234 | None:intergenic | 30.0% |
TGGAGCCATATTAATAATGA+TGG | + | chr4_2:46584221-46584240 | Msa0602710:CDS | 30.0% | |
CCTCTCCATCATTATTAATA+TGG | - | chr4_2:46584229-46584248 | None:intergenic | 30.0% | |
! | CCATATTAATAATGATGGAG+AGG | + | chr4_2:46584226-46584245 | Msa0602710:CDS | 30.0% |
GGACAGTTTATTTGATACAT+TGG | + | chr4_2:46584277-46584296 | Msa0602710:CDS | 30.0% | |
ACACTATATGAGGAATTATG+GGG | - | chr4_2:46584335-46584354 | None:intergenic | 30.0% | |
GACACTATATGAGGAATTAT+GGG | - | chr4_2:46584336-46584355 | None:intergenic | 30.0% | |
AGACACTATATGAGGAATTA+TGG | - | chr4_2:46584337-46584356 | None:intergenic | 30.0% | |
CAAACAAAGTAGAAAAAGGG+CGG | - | chr4_2:46580281-46580300 | None:intergenic | 35.0% | |
TAAAAATTATTGGACGGTCC+CGG | - | chr4_2:46580481-46580500 | None:intergenic | 35.0% | |
AATCTAATGCAAGTAGGGAT+GGG | + | chr4_2:46580552-46580571 | Msa0602710:intron | 35.0% | |
! | GAGGCTTTTTGAATGATATG+TGG | - | chr4_2:46580704-46580723 | None:intergenic | 35.0% |
AAACGTGTTCCTAATATCTG+AGG | - | chr4_2:46581207-46581226 | None:intergenic | 35.0% | |
TGAAAAATGACTCTCCAACT+TGG | - | chr4_2:46581235-46581254 | None:intergenic | 35.0% | |
! | TCCGGATTTTGTTAATATGG+AGG | - | chr4_2:46581295-46581314 | None:intergenic | 35.0% |
! | CTCTCCGGATTTTGTTAATA+TGG | - | chr4_2:46581298-46581317 | None:intergenic | 35.0% |
TGCAATATTTCACAAGTGTG+AGG | + | chr4_2:46581457-46581476 | Msa0602710:intron | 35.0% | |
AATTCAACGTCTTTAACCGT+CGG | - | chr4_2:46581530-46581549 | None:intergenic | 35.0% | |
AGAGAGAAAAAGGAAGAGAA+AGG | + | chr4_2:46581687-46581706 | Msa0602710:intron | 35.0% | |
TAGACTATGCACAACAATTG+AGG | - | chr4_2:46581850-46581869 | None:intergenic | 35.0% | |
TTGTGCATAGTCTACTAGTA+GGG | + | chr4_2:46581856-46581875 | Msa0602710:intron | 35.0% | |
!!! | TGTTTTTTTTAGAGGAGTGG+AGG | + | chr4_2:46581942-46581961 | Msa0602710:intron | 35.0% |
GACAATGTGTTTATAAGTGG+TGG | - | chr4_2:46582227-46582246 | None:intergenic | 35.0% | |
CATTGTTAAGAGTCCTACAT+CGG | - | chr4_2:46582264-46582283 | None:intergenic | 35.0% | |
ATATCATTGAGTGTGGACAT+CGG | + | chr4_2:46582412-46582431 | Msa0602710:intron | 35.0% | |
!!! | CAGTTTTTTTGACAGAGATC+TGG | - | chr4_2:46582494-46582513 | None:intergenic | 35.0% |
ATGTGTGTGATGTTTCATGT+CGG | + | chr4_2:46582593-46582612 | Msa0602710:intron | 35.0% | |
CCGTATGTAAAGAGAGTTAA+TGG | + | chr4_2:46582862-46582881 | Msa0602710:intron | 35.0% | |
ATGTTACTCTCCGTTAACAA+AGG | - | chr4_2:46582919-46582938 | None:intergenic | 35.0% | |
ATAGAAGCAAGAGAAATCAG+AGG | + | chr4_2:46583010-46583029 | Msa0602710:intron | 35.0% | |
GTAGTTGAACCATAACTTAG+AGG | - | chr4_2:46583214-46583233 | None:intergenic | 35.0% | |
CATTGGAAGAGATAACTTTG+AGG | - | chr4_2:46583555-46583574 | None:intergenic | 35.0% | |
GTGGAAGAAATAGAAGACAT+TGG | - | chr4_2:46583572-46583591 | None:intergenic | 35.0% | |
GGAAAAAATGAAGGAGTAAG+TGG | - | chr4_2:46583591-46583610 | None:intergenic | 35.0% | |
TTGGAGATAAAAAGAAGGGA+GGG | - | chr4_2:46583617-46583636 | None:intergenic | 35.0% | |
TTTGGAGATAAAAAGAAGGG+AGG | - | chr4_2:46583618-46583637 | None:intergenic | 35.0% | |
CGAGTTTGGAGATAAAAAGA+AGG | - | chr4_2:46583622-46583641 | None:intergenic | 35.0% | |
!!! | TTAGGTTTTGTTTGCGAGTT+TGG | - | chr4_2:46583636-46583655 | None:intergenic | 35.0% |
AAACTCGCAAACAAAACCTA+AGG | + | chr4_2:46583635-46583654 | Msa0602710:intron | 35.0% | |
AACTCGCAAACAAAACCTAA+GGG | + | chr4_2:46583636-46583655 | Msa0602710:intron | 35.0% | |
!! | AATTTTGGTGTGACACTTTG+TGG | + | chr4_2:46583930-46583949 | Msa0602710:intron | 35.0% |
TTGGGAATCAGTATGTTTGT+AGG | + | chr4_2:46584117-46584136 | Msa0602710:intron | 35.0% | |
GTATGTTTGTAGGAAGACAT+TGG | + | chr4_2:46584127-46584146 | Msa0602710:intron | 35.0% | |
!!! | CTTTCGCTTTTTAAGCATCT+TGG | + | chr4_2:46584535-46584554 | Msa0602710:three_prime_UTR | 35.0% |
TAATGCTCCTCTGCATCAAT+CGG | - | chr4_2:46580221-46580240 | None:intergenic | 40.0% | |
! | CATCATTCTTTTGCAGAGAG+TGG | - | chr4_2:46580248-46580267 | None:intergenic | 40.0% |
GCTTGATCAAGAAAATGGTC+CGG | + | chr4_2:46580308-46580327 | Msa0602710:CDS | 40.0% | |
AAAAATTATTGGACGGTCCC+GGG | - | chr4_2:46580480-46580499 | None:intergenic | 40.0% | |
GAATCTAATGCAAGTAGGGA+TGG | + | chr4_2:46580551-46580570 | Msa0602710:intron | 40.0% | |
GAAAAAAGTTTGGTCTGACC+TGG | - | chr4_2:46580626-46580645 | None:intergenic | 40.0% | |
GCTTAGGCCTTCAAACAAAT+TGG | + | chr4_2:46581107-46581126 | Msa0602710:intron | 40.0% | |
AGTCCAAACCCTTGGATTTA+GGG | - | chr4_2:46581184-46581203 | None:intergenic | 40.0% | |
GTTTGGACTCCTCAGATATT+AGG | + | chr4_2:46581195-46581214 | Msa0602710:intron | 40.0% | |
! | GTCTACAATTTTATCGCCGA+CGG | + | chr4_2:46581511-46581530 | Msa0602710:intron | 40.0% |
GTTGTGCATAGTCTACTAGT+AGG | + | chr4_2:46581855-46581874 | Msa0602710:intron | 40.0% | |
GTCTCTTAGAAATCGTGGTT+GGG | + | chr4_2:46582159-46582178 | Msa0602710:intron | 40.0% | |
TGTGTGTGATGTTTCATGTC+GGG | + | chr4_2:46582594-46582613 | Msa0602710:intron | 40.0% | |
GGAGGGTTTGGAAAAAATGA+AGG | - | chr4_2:46583600-46583619 | None:intergenic | 40.0% | |
GATAAAAAGAAGGGAGGGTT+TGG | - | chr4_2:46583612-46583631 | None:intergenic | 40.0% | |
CATTCATTGGAGTTTCCCTT+AGG | - | chr4_2:46583654-46583673 | None:intergenic | 40.0% | |
CTAAGGGAAACTCCAATGAA+TGG | + | chr4_2:46583652-46583671 | Msa0602710:intron | 40.0% | |
!! | ATATGGCTCCATTGATTTGG+TGG | - | chr4_2:46584212-46584231 | None:intergenic | 40.0% |
TGGAGAGGAATTAGAAGATG+AGG | + | chr4_2:46584241-46584260 | Msa0602710:CDS | 40.0% | |
AAGATGAGGAAGAAGAGAAC+TGG | + | chr4_2:46584255-46584274 | Msa0602710:CDS | 40.0% | |
AGATGAGGAAGAAGAGAACT+GGG | + | chr4_2:46584256-46584275 | Msa0602710:CDS | 40.0% | |
! | TCATGAGCAAGATTTGGAGT+AGG | - | chr4_2:46584305-46584324 | None:intergenic | 40.0% |
ACAAAGTAGAAAAAGGGCGG+TGG | - | chr4_2:46580278-46580297 | None:intergenic | 45.0% | |
ATCAAGAAAATGGTCCGGTG+CGG | + | chr4_2:46580313-46580332 | Msa0602710:CDS | 45.0% | |
!! | CAGTACTGGTGATCTTGATC+AGG | + | chr4_2:46580344-46580363 | Msa0602710:CDS | 45.0% |
AGCTAGACATCCGTTTGTAG+AGG | + | chr4_2:46580442-46580461 | Msa0602710:intron | 45.0% | |
CGAATCTACGCCTCTACAAA+CGG | - | chr4_2:46580455-46580474 | None:intergenic | 45.0% | |
ATGCAAGTAGGGATGGGAAT+AGG | + | chr4_2:46580558-46580577 | Msa0602710:intron | 45.0% | |
CTTAAATAGGTCGGCCTAAG+AGG | - | chr4_2:46580723-46580742 | None:intergenic | 45.0% | |
! | GACCTTCTGAAAGCCTGATA+CGG | - | chr4_2:46581043-46581062 | None:intergenic | 45.0% |
TTTGTTTGAAGGCCTAAGCC+TGG | - | chr4_2:46581106-46581125 | None:intergenic | 45.0% | |
AGGCCTTCAAACAAATTGGC+AGG | + | chr4_2:46581111-46581130 | Msa0602710:intron | 45.0% | |
! | TGGCCTGCCAATTTGTTTGA+AGG | - | chr4_2:46581117-46581136 | None:intergenic | 45.0% |
TTCAAACAAATTGGCAGGCC+AGG | + | chr4_2:46581116-46581135 | Msa0602710:intron | 45.0% | |
TTGGATTTAGGGGTGGGAAT+AGG | - | chr4_2:46581173-46581192 | None:intergenic | 45.0% | |
TATTCCCACCCCTAAATCCA+AGG | + | chr4_2:46581172-46581191 | Msa0602710:intron | 45.0% | |
ATTCCCACCCCTAAATCCAA+GGG | + | chr4_2:46581173-46581192 | Msa0602710:intron | 45.0% | |
AAACCCTTGGATTTAGGGGT+GGG | - | chr4_2:46581179-46581198 | None:intergenic | 45.0% | |
GTCCAAACCCTTGGATTTAG+GGG | - | chr4_2:46581183-46581202 | None:intergenic | 45.0% | |
GAGTCCAAACCCTTGGATTT+AGG | - | chr4_2:46581185-46581204 | None:intergenic | 45.0% | |
GAGACGTCTCTTAGAAATCG+TGG | + | chr4_2:46582154-46582173 | Msa0602710:intron | 45.0% | |
CGTCTCTTAGAAATCGTGGT+TGG | + | chr4_2:46582158-46582177 | Msa0602710:intron | 45.0% | |
CTAACACAACCCCACAAAAC+CGG | + | chr4_2:46582183-46582202 | Msa0602710:intron | 45.0% | |
CACCATCTCATATCCGATGT+AGG | + | chr4_2:46582248-46582267 | Msa0602710:intron | 45.0% | |
GTCCTACATCGGATATGAGA+TGG | - | chr4_2:46582253-46582272 | None:intergenic | 45.0% | |
!! | TAATGGAGTAATGGACACCC+TGG | + | chr4_2:46582302-46582321 | Msa0602710:intron | 45.0% |
GTGTGTGATGTTTCATGTCG+GGG | + | chr4_2:46582595-46582614 | Msa0602710:intron | 45.0% | |
TGTGTGATGTTTCATGTCGG+GGG | + | chr4_2:46582596-46582615 | Msa0602710:intron | 45.0% | |
! | TTCTTTTCCTCTGGGCTGTA+AGG | - | chr4_2:46582973-46582992 | None:intergenic | 45.0% |
TTACAGCCCAGAGGAAAAGA+AGG | + | chr4_2:46582972-46582991 | Msa0602710:CDS | 45.0% | |
! | TCCTCACCTTCTTTTCCTCT+GGG | - | chr4_2:46582981-46583000 | None:intergenic | 45.0% |
! | ATCCTCACCTTCTTTTCCTC+TGG | - | chr4_2:46582982-46583001 | None:intergenic | 45.0% |
TTTCTCGGAAGCCCCTAATA+TGG | - | chr4_2:46583328-46583347 | None:intergenic | 45.0% | |
TTTGCATGGTAGAGTCTTGC+AGG | + | chr4_2:46583878-46583897 | Msa0602710:intron | 45.0% | |
ACAGTAGGCCACGTATTAGA+GGG | + | chr4_2:46584153-46584172 | Msa0602710:CDS | 45.0% | |
GCAAATCTCCCTCTAATACG+TGG | - | chr4_2:46584164-46584183 | None:intergenic | 45.0% | |
GACTCGTCATGAGCAAGATT+TGG | - | chr4_2:46584311-46584330 | None:intergenic | 45.0% | |
! | TGGTTGTGCTGCTGCATATC+AGG | - | chr4_2:46580093-46580112 | None:intergenic | 50.0% |
CGGATGTCTAGCTGATGAGA+TGG | - | chr4_2:46580435-46580454 | None:intergenic | 50.0% | |
! | TAGAGGCGTAGATTCGAACC+CGG | + | chr4_2:46580459-46580478 | Msa0602710:intron | 50.0% |
AGACCTTGCAAAGCCTAGCT+CGG | + | chr4_2:46581142-46581161 | Msa0602710:intron | 50.0% | |
TTTAGGGGTGGGAATAGGCT+AGG | - | chr4_2:46581168-46581187 | None:intergenic | 50.0% | |
CAAACCCTTGGATTTAGGGG+TGG | - | chr4_2:46581180-46581199 | None:intergenic | 50.0% | |
CACCCCTAAATCCAAGGGTT+TGG | + | chr4_2:46581178-46581197 | Msa0602710:intron | 50.0% | |
ATCTGAGGAGTCCAAACCCT+TGG | - | chr4_2:46581192-46581211 | None:intergenic | 50.0% | |
!!! | ACCTCACATGCCGGTTTTGT+GGG | - | chr4_2:46582196-46582215 | None:intergenic | 50.0% |
CCATAACTTAGAGGTCTCGC+CGG | - | chr4_2:46583205-46583224 | None:intergenic | 50.0% | |
TAGGGGCTTCCGAGAAATAC+AGG | + | chr4_2:46583331-46583350 | Msa0602710:intron | 50.0% | |
AGGGGCTTCCGAGAAATACA+GGG | + | chr4_2:46583332-46583351 | Msa0602710:intron | 50.0% | |
GGAAGACATTGGCAGACAGT+AGG | + | chr4_2:46584138-46584157 | Msa0602710:CDS | 50.0% | |
GACAGTAGGCCACGTATTAG+AGG | + | chr4_2:46584152-46584171 | Msa0602710:CDS | 50.0% | |
ATGCAGCAGCACAACCACCT+CGG | + | chr4_2:46580096-46580115 | Msa0602710:CDS | 55.0% | |
CCACCTCGGTGAATACGAGT+CGG | + | chr4_2:46580110-46580129 | Msa0602710:CDS | 55.0% | |
CACCACCAGAGTTGAGCTGT+GGG | - | chr4_2:46580137-46580156 | None:intergenic | 55.0% | |
AGCGGCTGCACTAGCTACTT+GGG | + | chr4_2:46580186-46580205 | Msa0602710:CDS | 55.0% | |
CTCCTCTGCATCAATCGGTC+CGG | - | chr4_2:46580216-46580235 | None:intergenic | 55.0% | |
GTAGAAAAAGGGCGGTGGTG+TGG | - | chr4_2:46580273-46580292 | None:intergenic | 55.0% | |
GTACTGTAAACTCGCCGCAC+CGG | - | chr4_2:46580330-46580349 | None:intergenic | 55.0% | |
GTGCGGCGAGTTTACAGTAC+TGG | + | chr4_2:46580330-46580349 | Msa0602710:CDS | 55.0% | |
! | AGAGGCGTAGATTCGAACCC+GGG | + | chr4_2:46580460-46580479 | Msa0602710:intron | 55.0% |
AGTAGGGATGGGAATAGGCC+AGG | + | chr4_2:46580563-46580582 | Msa0602710:intron | 55.0% | |
GCTAGGCCATAGGCAACTGT+AGG | - | chr4_2:46580593-46580612 | None:intergenic | 55.0% | |
ACAGGTTAGCAGGCCGTATC+AGG | + | chr4_2:46581027-46581046 | Msa0602710:intron | 55.0% | |
GGCCGTATCAGGCTTTCAGA+AGG | + | chr4_2:46581038-46581057 | Msa0602710:intron | 55.0% | |
!!! | CCTCACATGCCGGTTTTGTG+GGG | - | chr4_2:46582195-46582214 | None:intergenic | 55.0% |
!!! | CACCTCACATGCCGGTTTTG+TGG | - | chr4_2:46582197-46582216 | None:intergenic | 55.0% |
CAAAACCGGCATGTGAGGTG+AGG | + | chr4_2:46582197-46582216 | Msa0602710:intron | 55.0% | |
GCAATCCTCACCTCACATGC+CGG | - | chr4_2:46582205-46582224 | None:intergenic | 55.0% | |
GAGTGTGGACATCGGTCTCA+AGG | + | chr4_2:46582420-46582439 | Msa0602710:intron | 55.0% | |
TTCCTCTGGGCTGTAAGGAC+TGG | - | chr4_2:46582968-46582987 | None:intergenic | 55.0% | |
GCCCAGAGGAAAAGAAGGTG+AGG | + | chr4_2:46582977-46582996 | Msa0602710:intron | 55.0% | |
CCGGCGAGACCTCTAAGTTA+TGG | + | chr4_2:46583202-46583221 | Msa0602710:intron | 55.0% | |
CTGCTGCATATCAGGCGTGG+TGG | - | chr4_2:46580085-46580104 | None:intergenic | 60.0% | |
! | GTGCTGCTGCATATCAGGCG+TGG | - | chr4_2:46580088-46580107 | None:intergenic | 60.0% |
! | CCGACTCGTATTCACCGAGG+TGG | - | chr4_2:46580113-46580132 | None:intergenic | 60.0% |
!! | GGACCGACTCGTATTCACCG+AGG | - | chr4_2:46580116-46580135 | None:intergenic | 60.0% |
TCGGTCCCACAGCTCAACTC+TGG | + | chr4_2:46580129-46580148 | Msa0602710:intron | 60.0% | |
GTCCCACAGCTCAACTCTGG+TGG | + | chr4_2:46580132-46580151 | Msa0602710:intron | 60.0% | |
CCACCACCAGAGTTGAGCTG+TGG | - | chr4_2:46580138-46580157 | None:intergenic | 60.0% | |
CCACAGCTCAACTCTGGTGG+TGG | + | chr4_2:46580135-46580154 | Msa0602710:intron | 60.0% | |
!! | CAGCTCAACTCTGGTGGTGG+TGG | + | chr4_2:46580138-46580157 | Msa0602710:intron | 60.0% |
!! | CTCAACTCTGGTGGTGGTGG+TGG | + | chr4_2:46580141-46580160 | Msa0602710:CDS | 60.0% |
!! | AACTCTGGTGGTGGTGGTGG+TGG | + | chr4_2:46580144-46580163 | Msa0602710:CDS | 60.0% |
CAGCGGCTGCACTAGCTACT+TGG | + | chr4_2:46580185-46580204 | Msa0602710:CDS | 60.0% | |
GCGGCTGCACTAGCTACTTG+GGG | + | chr4_2:46580187-46580206 | Msa0602710:CDS | 60.0% | |
CACTAGCTACTTGGGGTCGC+CGG | + | chr4_2:46580194-46580213 | Msa0602710:CDS | 60.0% | |
GGCCATAGGCAACTGTAGGC+CGG | - | chr4_2:46580589-46580608 | None:intergenic | 60.0% | |
CCTGTCGTACGCTAGGCCAT+AGG | - | chr4_2:46580603-46580622 | None:intergenic | 60.0% | |
CCTATGGCCTAGCGTACGAC+AGG | + | chr4_2:46580600-46580619 | Msa0602710:intron | 60.0% | |
CTTATGAAAGGCCGCACGCC+AGG | + | chr4_2:46581085-46581104 | Msa0602710:intron | 60.0% | |
GGCTTTGCAAGGTCTGAGCC+TGG | - | chr4_2:46581137-46581156 | None:intergenic | 60.0% | |
AGGCCGAGCTAGGCTTTGCA+AGG | - | chr4_2:46581148-46581167 | None:intergenic | 60.0% | |
GGAATAGGCTAGGCCGAGCT+AGG | - | chr4_2:46581158-46581177 | None:intergenic | 60.0% | |
CCCCACAAAACCGGCATGTG+AGG | + | chr4_2:46582192-46582211 | Msa0602710:intron | 60.0% | |
AGCCAGTCCTTACAGCCCAG+AGG | + | chr4_2:46582963-46582982 | Msa0602710:CDS | 60.0% | |
CGCCGGACCGATTGATGCAG+AGG | + | chr4_2:46580211-46580230 | Msa0602710:CDS | 65.0% | |
GGGATGGGAATAGGCCAGGC+CGG | + | chr4_2:46580567-46580586 | Msa0602710:intron | 65.0% | |
TAGGCAACTGTAGGCCGGCC+TGG | - | chr4_2:46580584-46580603 | None:intergenic | 65.0% | |
GGCCGGCCTACAGTTGCCTA+TGG | + | chr4_2:46580584-46580603 | Msa0602710:intron | 65.0% | |
GACCTGGCCTGTCGTACGCT+AGG | - | chr4_2:46580610-46580629 | None:intergenic | 65.0% | |
AAAGGCCGCACGCCAGGCTT+AGG | + | chr4_2:46581091-46581110 | Msa0602710:intron | 65.0% | |
GAAGGCCTAAGCCTGGCGTG+CGG | - | chr4_2:46581099-46581118 | None:intergenic | 65.0% | |
GGCCTAGCGTACGACAGGCC+AGG | + | chr4_2:46580605-46580624 | Msa0602710:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 46580054 | 46584573 | 46580054 | ID=Msa0602710;Name=Msa0602710 |
chr4_2 | mRNA | 46580054 | 46584573 | 46580054 | ID=Msa0602710-mRNA-1;Parent=Msa0602710;Name=Msa0602710-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.33|0.25|1|0.33|0.25|4|209|200 |
chr4_2 | exon | 46580054 | 46580131 | 46580054 | ID=Msa0602710-mRNA-1:exon:10601;Parent=Msa0602710-mRNA-1 |
chr4_2 | exon | 46580141 | 46580365 | 46580141 | ID=Msa0602710-mRNA-1:exon:10602;Parent=Msa0602710-mRNA-1 |
chr4_2 | exon | 46582931 | 46582993 | 46582931 | ID=Msa0602710-mRNA-1:exon:10603;Parent=Msa0602710-mRNA-1 |
chr4_2 | exon | 46584128 | 46584573 | 46584128 | ID=Msa0602710-mRNA-1:exon:10604;Parent=Msa0602710-mRNA-1 |
chr4_2 | CDS | 46580054 | 46580131 | 46580054 | ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1 |
chr4_2 | CDS | 46580141 | 46580365 | 46580141 | ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1 |
chr4_2 | CDS | 46582931 | 46582993 | 46582931 | ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1 |
chr4_2 | CDS | 46584128 | 46584364 | 46584128 | ID=Msa0602710-mRNA-1:cds;Parent=Msa0602710-mRNA-1 |
chr4_2 | three_prime_UTR | 46584365 | 46584573 | 46584365 | ID=Msa0602710-mRNA-1:three_prime_utr;Parent=Msa0602710-mRNA-1 |
Gene Sequence |
Protein sequence |