Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603240 | KEH30134.1 | 95.349 | 258 | 7 | 3 | 1 | 254 | 1 | 257 | 2.33e-178 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603240 | sp|Q6X7K1|WOX2_ARATH | 40.856 | 257 | 115 | 8 | 17 | 250 | 6 | 248 | 2.34e-52 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0603240 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603240 | MtrunA17_Chr4g0031341 | 95.349 | 258 | 7 | 3 | 1 | 254 | 1 | 257 | 0.0 | 500 |
| Msa0603240 | MtrunA17_Chr8g0392991 | 56.383 | 94 | 35 | 2 | 12 | 99 | 80 | 173 | 6.04e-28 | 109 |
| Msa0603240 | MtrunA17_Chr1g0153171 | 35.754 | 179 | 85 | 4 | 20 | 196 | 85 | 235 | 9.56e-27 | 103 |
| Msa0603240 | MtrunA17_Chr4g0043891 | 67.692 | 65 | 21 | 0 | 23 | 87 | 6 | 70 | 4.17e-26 | 102 |
| Msa0603240 | MtrunA17_Chr7g0238431 | 66.667 | 66 | 22 | 0 | 23 | 88 | 6 | 71 | 5.24e-26 | 100 |
| Msa0603240 | MtrunA17_Chr5g0405351 | 68.182 | 66 | 20 | 1 | 22 | 86 | 27 | 92 | 5.03e-25 | 100 |
| Msa0603240 | MtrunA17_Chr5g0436661 | 51.899 | 79 | 37 | 1 | 13 | 90 | 20 | 98 | 2.96e-24 | 95.9 |
| Msa0603240 | MtrunA17_Chr8g0385441 | 65.455 | 55 | 19 | 0 | 34 | 88 | 91 | 145 | 2.74e-20 | 84.7 |
| Msa0603240 | MtrunA17_Chr3g0125111 | 63.636 | 55 | 20 | 0 | 34 | 88 | 89 | 143 | 5.48e-20 | 84.0 |
| Msa0603240 | MtrunA17_Chr2g0283141 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 3.29e-14 | 71.6 |
| Msa0603240 | MtrunA17_Chr7g0223471 | 45.161 | 62 | 34 | 0 | 25 | 86 | 47 | 108 | 1.21e-13 | 70.1 |
| Msa0603240 | MtrunA17_Chr1g0212511 | 46.154 | 65 | 35 | 0 | 20 | 84 | 80 | 144 | 4.72e-13 | 67.0 |
| Msa0603240 | MtrunA17_Chr3g0144021 | 40.909 | 66 | 39 | 0 | 20 | 85 | 77 | 142 | 8.29e-12 | 62.8 |
| Msa0603240 | MtrunA17_Chr7g0222981 | 45.161 | 62 | 34 | 0 | 25 | 86 | 68 | 129 | 2.72e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603240 | AT5G59340.1 | 40.856 | 257 | 115 | 8 | 17 | 250 | 6 | 248 | 2.38e-53 | 173 |
| Msa0603240 | AT3G18010.1 | 45.312 | 128 | 57 | 2 | 20 | 134 | 71 | 198 | 5.86e-29 | 112 |
| Msa0603240 | AT1G46480.1 | 36.994 | 173 | 98 | 3 | 24 | 196 | 89 | 250 | 1.61e-26 | 103 |
| Msa0603240 | AT1G46480.2 | 65.672 | 67 | 23 | 0 | 24 | 90 | 89 | 155 | 3.58e-26 | 101 |
| Msa0603240 | AT2G28610.1 | 62.687 | 67 | 25 | 0 | 22 | 88 | 5 | 71 | 7.61e-25 | 99.4 |
| Msa0603240 | AT3G11260.1 | 50.000 | 80 | 40 | 0 | 13 | 92 | 12 | 91 | 8.35e-25 | 97.4 |
| Msa0603240 | AT5G05770.1 | 54.054 | 74 | 34 | 0 | 21 | 94 | 25 | 98 | 1.03e-24 | 95.5 |
| Msa0603240 | AT2G17950.1 | 63.636 | 66 | 23 | 1 | 22 | 86 | 35 | 100 | 2.29e-23 | 96.3 |
| Msa0603240 | AT2G01500.1 | 64.407 | 59 | 21 | 0 | 21 | 79 | 57 | 115 | 5.65e-22 | 92.4 |
| Msa0603240 | AT5G45980.1 | 51.613 | 62 | 30 | 0 | 25 | 86 | 55 | 116 | 8.03e-15 | 73.2 |
| Msa0603240 | AT1G20700.2 | 40.506 | 79 | 47 | 0 | 13 | 91 | 21 | 99 | 8.23e-15 | 70.1 |
| Msa0603240 | AT1G20700.3 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 1.88e-14 | 70.5 |
| Msa0603240 | AT1G20700.1 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 1.96e-14 | 70.5 |
| Msa0603240 | AT2G33880.1 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 9.43e-14 | 70.5 |
| Msa0603240 | AT2G33880.2 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 9.58e-14 | 70.5 |
| Msa0603240 | AT4G35550.1 | 40.278 | 72 | 43 | 0 | 14 | 85 | 88 | 159 | 3.04e-13 | 68.2 |
| Msa0603240 | AT1G20710.1 | 50.000 | 54 | 27 | 0 | 32 | 85 | 86 | 139 | 2.07e-11 | 62.0 |
Find 46 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATAGGTGAAGGATAAA+TGG | 0.223363 | 4_2:-47515444 | None:intergenic |
| AATCAAGATCATGGTTATAA+TGG | 0.248654 | 4_2:+47516691 | Msa0603240:CDS |
| CTGTAACCAAAGTTATAGTT+AGG | 0.305798 | 4_2:-47516523 | None:intergenic |
| TTCTGCAGGACAAGGTTCTT+AGG | 0.334683 | 4_2:+47516744 | Msa0603240:CDS |
| AGTTCCACTGATACACATTC+TGG | 0.341293 | 4_2:+47516646 | Msa0603240:CDS |
| AACATACCATTTGGACAAAT+AGG | 0.347632 | 4_2:-47515458 | None:intergenic |
| ACTGCATCCAACTGGCATAT+TGG | 0.347683 | 4_2:+47516573 | Msa0603240:CDS |
| ACTGCAGGTAGAAGCACTTT+TGG | 0.360138 | 4_2:-47516400 | None:intergenic |
| TAGCTTATTTCATGACTTTG+TGG | 0.366655 | 4_2:-47516364 | None:intergenic |
| CCTTCACCTATTTGTCCAAA+TGG | 0.376093 | 4_2:+47515452 | Msa0603240:CDS |
| ATCAAGATCATGGTTATAAT+GGG | 0.392817 | 4_2:+47516692 | Msa0603240:CDS |
| ATTAATGAGGAGGGTTCAAA+TGG | 0.414428 | 4_2:+47515164 | Msa0603240:CDS |
| TGTGGTTGTGGTACGCAATA+TGG | 0.424892 | 4_2:-47516346 | None:intergenic |
| ATTTCATGACTTTGTGGTTG+TGG | 0.425330 | 4_2:-47516358 | None:intergenic |
| CAAATAGGTGAAGGATAAAT+GGG | 0.425469 | 4_2:-47515443 | None:intergenic |
| TCTTGTATTTCTTCAGCACT+TGG | 0.437582 | 4_2:-47515278 | None:intergenic |
| TTGTTTCCACTGCATCCAAC+TGG | 0.438638 | 4_2:+47516565 | Msa0603240:CDS |
| AGAATCCCTAACTATAACTT+TGG | 0.443156 | 4_2:+47516517 | Msa0603240:CDS |
| TTCCCTTCCAATATGCCAGT+TGG | 0.473137 | 4_2:-47516580 | None:intergenic |
| GCTGAGAAAGTTATGTCAAA+TGG | 0.482284 | 4_2:+47516442 | Msa0603240:CDS |
| ACTGCTAGGCTTAGAGTGTA+TGG | 0.483688 | 4_2:+47515305 | Msa0603240:CDS |
| TGTAACCAAAGTTATAGTTA+GGG | 0.484125 | 4_2:-47516522 | None:intergenic |
| TTGGAGAATTTGTATAAGCA+AGG | 0.498360 | 4_2:+47515245 | Msa0603240:CDS |
| CATGATATCAATCAAGATCA+TGG | 0.502262 | 4_2:+47516682 | Msa0603240:CDS |
| AAAAGAACAAATAAGTATGT+TGG | 0.504717 | 4_2:+47515226 | Msa0603240:CDS |
| CATCCAACTGGCATATTGGA+AGG | 0.509666 | 4_2:+47516577 | Msa0603240:CDS |
| TTACAGTAATCAAGAAACAT+TGG | 0.520782 | 4_2:+47516540 | Msa0603240:CDS |
| GGTGAAGGATAAATGGGTTG+AGG | 0.539516 | 4_2:-47515437 | None:intergenic |
| TTTAATAATTCTGCAGGACA+AGG | 0.556573 | 4_2:+47516736 | Msa0603240:CDS |
| TTCCTTCTAAAACCTACTGC+AGG | 0.572590 | 4_2:-47516415 | None:intergenic |
| AATAATGAGATTAATGAGGA+GGG | 0.573895 | 4_2:+47515155 | Msa0603240:CDS |
| CTGAAACAATAGAAGACACC+TGG | 0.584011 | 4_2:-47516612 | None:intergenic |
| TAATAATGAGATTAATGAGG+AGG | 0.585231 | 4_2:+47515154 | Msa0603240:CDS |
| AAAGTGCTTCTACCTGCAGT+AGG | 0.586289 | 4_2:+47516403 | Msa0603240:CDS |
| AATATGCCAGTTGGATGCAG+TGG | 0.586423 | 4_2:-47516571 | None:intergenic |
| TTAATGAGGAGGGTTCAAAT+GGG | 0.588886 | 4_2:+47515165 | Msa0603240:CDS |
| AGAAGAAGAAGAATAATGGA+GGG | 0.590346 | 4_2:+47515125 | None:intergenic |
| AGAACCAGAATGTGTATCAG+TGG | 0.599607 | 4_2:-47516650 | None:intergenic |
| AGAGTGTATGGTCACATCGA+AGG | 0.601558 | 4_2:+47515317 | Msa0603240:CDS |
| AAATATCTGCAATAGTCCAA+TGG | 0.604277 | 4_2:+47516471 | Msa0603240:CDS |
| CCATTTGGACAAATAGGTGA+AGG | 0.604508 | 4_2:-47515452 | None:intergenic |
| AAATACAAGAAATCACTGCT+AGG | 0.611419 | 4_2:+47515291 | Msa0603240:CDS |
| GAATAATAATGAGATTAATG+AGG | 0.611694 | 4_2:+47515151 | Msa0603240:CDS |
| ATCCAACTGGCATATTGGAA+GGG | 0.612491 | 4_2:+47516578 | Msa0603240:CDS |
| GGAAGGGAAAACAACTGACC+AGG | 0.627194 | 4_2:+47516594 | Msa0603240:CDS |
| GTATTTCATCAAGTTCACGA+TGG | 0.702362 | 4_2:+47515195 | Msa0603240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTCTTATTATATTTTCA+TGG | + | chr4_2:47515555-47515574 | Msa0603240:intron | 15.0% |
| !! | ATAACTAATAGTTAAAAACA+AGG | - | chr4_2:47515841-47515860 | None:intergenic | 15.0% |
| !!! | AACTAAAAAAGCATTAAAAA+AGG | + | chr4_2:47516150-47516169 | Msa0603240:intron | 15.0% |
| !!! | GGTAATTGAATTATTATTTT+TGG | + | chr4_2:47516305-47516324 | Msa0603240:intron | 15.0% |
| !! | TTATTAAAAAAGTCAAAGAA+GGG | - | chr4_2:47516724-47516743 | None:intergenic | 15.0% |
| !! | ATTATTAAAAAAGTCAAAGA+AGG | - | chr4_2:47516725-47516744 | None:intergenic | 15.0% |
| !!! | TTGTTCTTATTATATTTTCA+TGG | + | chr4_2:47515555-47515574 | Msa0603240:intron | 15.0% |
| !! | ATAACTAATAGTTAAAAACA+AGG | - | chr4_2:47515841-47515860 | None:intergenic | 15.0% |
| !!! | AACTAAAAAAGCATTAAAAA+AGG | + | chr4_2:47516150-47516169 | Msa0603240:intron | 15.0% |
| !!! | GGTAATTGAATTATTATTTT+TGG | + | chr4_2:47516305-47516324 | Msa0603240:intron | 15.0% |
| !! | TTATTAAAAAAGTCAAAGAA+GGG | - | chr4_2:47516724-47516743 | None:intergenic | 15.0% |
| !! | ATTATTAAAAAAGTCAAAGA+AGG | - | chr4_2:47516725-47516744 | None:intergenic | 15.0% |
| !! | GAATAATAATGAGATTAATG+AGG | + | chr4_2:47515151-47515170 | Msa0603240:CDS | 20.0% |
| !!! | TACTTATTTGTTCTTTTGTT+GGG | - | chr4_2:47515223-47515242 | None:intergenic | 20.0% |
| !!! | ATACTTATTTGTTCTTTTGT+TGG | - | chr4_2:47515224-47515243 | None:intergenic | 20.0% |
| !! | AAAAGAACAAATAAGTATGT+TGG | + | chr4_2:47515226-47515245 | Msa0603240:CDS | 20.0% |
| !! | CAAAAACATTGATATGAAAA+TGG | - | chr4_2:47515538-47515557 | None:intergenic | 20.0% |
| !! | ATCTATATTGTGGTAAAATA+TGG | + | chr4_2:47515785-47515804 | Msa0603240:intron | 20.0% |
| !! | TCTATATTGTGGTAAAATAT+GGG | + | chr4_2:47515786-47515805 | Msa0603240:intron | 20.0% |
| !! | TGAAAATGAGATTTATTGAA+AGG | - | chr4_2:47515938-47515957 | None:intergenic | 20.0% |
| !!! | TTCAATAAATCTCATTTTCA+TGG | + | chr4_2:47515938-47515957 | Msa0603240:intron | 20.0% |
| !! | ACCAAAAATAAAATACTAGA+AGG | - | chr4_2:47516030-47516049 | None:intergenic | 20.0% |
| !!! | ATGTTTTCATTATATACCAT+TGG | - | chr4_2:47516490-47516509 | None:intergenic | 20.0% |
| !! | GAATAATAATGAGATTAATG+AGG | + | chr4_2:47515151-47515170 | Msa0603240:CDS | 20.0% |
| !!! | TACTTATTTGTTCTTTTGTT+GGG | - | chr4_2:47515223-47515242 | None:intergenic | 20.0% |
| !!! | ATACTTATTTGTTCTTTTGT+TGG | - | chr4_2:47515224-47515243 | None:intergenic | 20.0% |
| !! | AAAAGAACAAATAAGTATGT+TGG | + | chr4_2:47515226-47515245 | Msa0603240:CDS | 20.0% |
| !! | CAAAAACATTGATATGAAAA+TGG | - | chr4_2:47515538-47515557 | None:intergenic | 20.0% |
| !! | ATCTATATTGTGGTAAAATA+TGG | + | chr4_2:47515785-47515804 | Msa0603240:intron | 20.0% |
| !! | TCTATATTGTGGTAAAATAT+GGG | + | chr4_2:47515786-47515805 | Msa0603240:intron | 20.0% |
| !! | TGAAAATGAGATTTATTGAA+AGG | - | chr4_2:47515938-47515957 | None:intergenic | 20.0% |
| !!! | TTCAATAAATCTCATTTTCA+TGG | + | chr4_2:47515938-47515957 | Msa0603240:intron | 20.0% |
| !! | ACCAAAAATAAAATACTAGA+AGG | - | chr4_2:47516030-47516049 | None:intergenic | 20.0% |
| !!! | ATGTTTTCATTATATACCAT+TGG | - | chr4_2:47516490-47516509 | None:intergenic | 20.0% |
| ! | TAATAATGAGATTAATGAGG+AGG | + | chr4_2:47515154-47515173 | Msa0603240:CDS | 25.0% |
| ! | AATAATGAGATTAATGAGGA+GGG | + | chr4_2:47515155-47515174 | Msa0603240:CDS | 25.0% |
| ! | TATAACCTAGAACTAGAAAA+AGG | - | chr4_2:47515495-47515514 | None:intergenic | 25.0% |
| ! | TATCTTTGTACGACATAAAA+TGG | + | chr4_2:47515681-47515700 | Msa0603240:intron | 25.0% |
| !!! | TTGTTGTTGTATCTTTTTCA+TGG | + | chr4_2:47515751-47515770 | Msa0603240:intron | 25.0% |
| ! | TAAAACGGGATTTATATAGA+GGG | - | chr4_2:47515904-47515923 | None:intergenic | 25.0% |
| ! | AAGGTTAATTTCTCCTAAAA+CGG | - | chr4_2:47515919-47515938 | None:intergenic | 25.0% |
| !!! | GCCTTCTAGTATTTTATTTT+TGG | + | chr4_2:47516026-47516045 | Msa0603240:intron | 25.0% |
| ! | CAAATAAATTACTCCATCTT+TGG | - | chr4_2:47516199-47516218 | None:intergenic | 25.0% |
| ! | TGTAACCAAAGTTATAGTTA+GGG | - | chr4_2:47516525-47516544 | None:intergenic | 25.0% |
| ! | TTACAGTAATCAAGAAACAT+TGG | + | chr4_2:47516540-47516559 | Msa0603240:CDS | 25.0% |
| ! | AATCAAGATCATGGTTATAA+TGG | + | chr4_2:47516691-47516710 | Msa0603240:CDS | 25.0% |
| ! | ATCAAGATCATGGTTATAAT+GGG | + | chr4_2:47516692-47516711 | Msa0603240:CDS | 25.0% |
| !!! | GACTTTTTTAATAATTCTGC+AGG | + | chr4_2:47516730-47516749 | Msa0603240:CDS | 25.0% |
| ! | TAATAATGAGATTAATGAGG+AGG | + | chr4_2:47515154-47515173 | Msa0603240:CDS | 25.0% |
| ! | AATAATGAGATTAATGAGGA+GGG | + | chr4_2:47515155-47515174 | Msa0603240:CDS | 25.0% |
| ! | TATAACCTAGAACTAGAAAA+AGG | - | chr4_2:47515495-47515514 | None:intergenic | 25.0% |
| ! | TATCTTTGTACGACATAAAA+TGG | + | chr4_2:47515681-47515700 | Msa0603240:intron | 25.0% |
| !!! | TTGTTGTTGTATCTTTTTCA+TGG | + | chr4_2:47515751-47515770 | Msa0603240:intron | 25.0% |
| ! | TAAAACGGGATTTATATAGA+GGG | - | chr4_2:47515904-47515923 | None:intergenic | 25.0% |
| ! | AAGGTTAATTTCTCCTAAAA+CGG | - | chr4_2:47515919-47515938 | None:intergenic | 25.0% |
| !!! | GCCTTCTAGTATTTTATTTT+TGG | + | chr4_2:47516026-47516045 | Msa0603240:intron | 25.0% |
| ! | CAAATAAATTACTCCATCTT+TGG | - | chr4_2:47516199-47516218 | None:intergenic | 25.0% |
| ! | TGTAACCAAAGTTATAGTTA+GGG | - | chr4_2:47516525-47516544 | None:intergenic | 25.0% |
| ! | TTACAGTAATCAAGAAACAT+TGG | + | chr4_2:47516540-47516559 | Msa0603240:CDS | 25.0% |
| ! | AATCAAGATCATGGTTATAA+TGG | + | chr4_2:47516691-47516710 | Msa0603240:CDS | 25.0% |
| ! | ATCAAGATCATGGTTATAAT+GGG | + | chr4_2:47516692-47516711 | Msa0603240:CDS | 25.0% |
| !!! | GACTTTTTTAATAATTCTGC+AGG | + | chr4_2:47516730-47516749 | Msa0603240:CDS | 25.0% |
| TTGGAGAATTTGTATAAGCA+AGG | + | chr4_2:47515245-47515264 | Msa0603240:CDS | 30.0% | |
| AAATACAAGAAATCACTGCT+AGG | + | chr4_2:47515291-47515310 | Msa0603240:CDS | 30.0% | |
| ! | AAGGAAAGAATGTCTTTTAC+TGG | + | chr4_2:47515336-47515355 | Msa0603240:CDS | 30.0% |
| CAAATAGGTGAAGGATAAAT+GGG | - | chr4_2:47515446-47515465 | None:intergenic | 30.0% | |
| ACAAATAGGTGAAGGATAAA+TGG | - | chr4_2:47515447-47515466 | None:intergenic | 30.0% | |
| AACATACCATTTGGACAAAT+AGG | - | chr4_2:47515461-47515480 | None:intergenic | 30.0% | |
| !!! | TTCTTCCTTTTTCTAGTTCT+AGG | + | chr4_2:47515487-47515506 | Msa0603240:intron | 30.0% |
| ! | AACCTAATGAGTACTACTTT+TGG | - | chr4_2:47515596-47515615 | None:intergenic | 30.0% |
| CCATATTTAAATTGTGCAAG+CGG | + | chr4_2:47515621-47515640 | Msa0603240:intron | 30.0% | |
| TTCTGCAAACATCTATATTG+TGG | + | chr4_2:47515775-47515794 | Msa0603240:intron | 30.0% | |
| ! | AAAACAAGGTGCATTTTCAA+CGG | - | chr4_2:47515827-47515846 | None:intergenic | 30.0% |
| CTAAAACGGGATTTATATAG+AGG | - | chr4_2:47515905-47515924 | None:intergenic | 30.0% | |
| ! | CTCTATATAAATCCCGTTTT+AGG | + | chr4_2:47515903-47515922 | Msa0603240:intron | 30.0% |
| AGGTTAATTTCTCCTAAAAC+GGG | - | chr4_2:47515918-47515937 | None:intergenic | 30.0% | |
| TTTCTTCATGCAAATGTGTT+TGG | + | chr4_2:47516088-47516107 | Msa0603240:intron | 30.0% | |
| AACAGAAACATAACCAAAGA+TGG | + | chr4_2:47516183-47516202 | Msa0603240:intron | 30.0% | |
| TAGCTTATTTCATGACTTTG+TGG | - | chr4_2:47516367-47516386 | None:intergenic | 30.0% | |
| AAATATCTGCAATAGTCCAA+TGG | + | chr4_2:47516471-47516490 | Msa0603240:CDS | 30.0% | |
| AGAATCCCTAACTATAACTT+TGG | + | chr4_2:47516517-47516536 | Msa0603240:CDS | 30.0% | |
| CTGTAACCAAAGTTATAGTT+AGG | - | chr4_2:47516526-47516545 | None:intergenic | 30.0% | |
| CATGATATCAATCAAGATCA+TGG | + | chr4_2:47516682-47516701 | Msa0603240:CDS | 30.0% | |
| TTTAATAATTCTGCAGGACA+AGG | + | chr4_2:47516736-47516755 | Msa0603240:CDS | 30.0% | |
| TTGGAGAATTTGTATAAGCA+AGG | + | chr4_2:47515245-47515264 | Msa0603240:CDS | 30.0% | |
| AAATACAAGAAATCACTGCT+AGG | + | chr4_2:47515291-47515310 | Msa0603240:CDS | 30.0% | |
| ! | AAGGAAAGAATGTCTTTTAC+TGG | + | chr4_2:47515336-47515355 | Msa0603240:CDS | 30.0% |
| CAAATAGGTGAAGGATAAAT+GGG | - | chr4_2:47515446-47515465 | None:intergenic | 30.0% | |
| ACAAATAGGTGAAGGATAAA+TGG | - | chr4_2:47515447-47515466 | None:intergenic | 30.0% | |
| AACATACCATTTGGACAAAT+AGG | - | chr4_2:47515461-47515480 | None:intergenic | 30.0% | |
| !!! | TTCTTCCTTTTTCTAGTTCT+AGG | + | chr4_2:47515487-47515506 | Msa0603240:intron | 30.0% |
| ! | AACCTAATGAGTACTACTTT+TGG | - | chr4_2:47515596-47515615 | None:intergenic | 30.0% |
| CCATATTTAAATTGTGCAAG+CGG | + | chr4_2:47515621-47515640 | Msa0603240:intron | 30.0% | |
| TTCTGCAAACATCTATATTG+TGG | + | chr4_2:47515775-47515794 | Msa0603240:intron | 30.0% | |
| ! | AAAACAAGGTGCATTTTCAA+CGG | - | chr4_2:47515827-47515846 | None:intergenic | 30.0% |
| CTAAAACGGGATTTATATAG+AGG | - | chr4_2:47515905-47515924 | None:intergenic | 30.0% | |
| ! | CTCTATATAAATCCCGTTTT+AGG | + | chr4_2:47515903-47515922 | Msa0603240:intron | 30.0% |
| AGGTTAATTTCTCCTAAAAC+GGG | - | chr4_2:47515918-47515937 | None:intergenic | 30.0% | |
| TTTCTTCATGCAAATGTGTT+TGG | + | chr4_2:47516088-47516107 | Msa0603240:intron | 30.0% | |
| AACAGAAACATAACCAAAGA+TGG | + | chr4_2:47516183-47516202 | Msa0603240:intron | 30.0% | |
| TAGCTTATTTCATGACTTTG+TGG | - | chr4_2:47516367-47516386 | None:intergenic | 30.0% | |
| AAATATCTGCAATAGTCCAA+TGG | + | chr4_2:47516471-47516490 | Msa0603240:CDS | 30.0% | |
| AGAATCCCTAACTATAACTT+TGG | + | chr4_2:47516517-47516536 | Msa0603240:CDS | 30.0% | |
| CTGTAACCAAAGTTATAGTT+AGG | - | chr4_2:47516526-47516545 | None:intergenic | 30.0% | |
| CATGATATCAATCAAGATCA+TGG | + | chr4_2:47516682-47516701 | Msa0603240:CDS | 30.0% | |
| TTTAATAATTCTGCAGGACA+AGG | + | chr4_2:47516736-47516755 | Msa0603240:CDS | 30.0% | |
| ATTAATGAGGAGGGTTCAAA+TGG | + | chr4_2:47515164-47515183 | Msa0603240:CDS | 35.0% | |
| TTAATGAGGAGGGTTCAAAT+GGG | + | chr4_2:47515165-47515184 | Msa0603240:CDS | 35.0% | |
| GTATTTCATCAAGTTCACGA+TGG | + | chr4_2:47515195-47515214 | Msa0603240:CDS | 35.0% | |
| TCTTGTATTTCTTCAGCACT+TGG | - | chr4_2:47515281-47515300 | None:intergenic | 35.0% | |
| GAAGTTGAGAACATACCATT+TGG | - | chr4_2:47515470-47515489 | None:intergenic | 35.0% | |
| TGCCAAAAGTAGTACTCATT+AGG | + | chr4_2:47515591-47515610 | Msa0603240:intron | 35.0% | |
| CCGCTTGCACAATTTAAATA+TGG | - | chr4_2:47515624-47515643 | None:intergenic | 35.0% | |
| CTAGTATTCTACTGTAACGT+TGG | + | chr4_2:47516284-47516303 | Msa0603240:intron | 35.0% | |
| ATTTCATGACTTTGTGGTTG+TGG | - | chr4_2:47516361-47516380 | None:intergenic | 35.0% | |
| !! | GAAGCACTTTTGGATTTTGA+GGG | - | chr4_2:47516393-47516412 | None:intergenic | 35.0% |
| !!! | AGAAGCACTTTTGGATTTTG+AGG | - | chr4_2:47516394-47516413 | None:intergenic | 35.0% |
| GCTGAGAAAGTTATGTCAAA+TGG | + | chr4_2:47516442-47516461 | Msa0603240:CDS | 35.0% | |
| ATTAATGAGGAGGGTTCAAA+TGG | + | chr4_2:47515164-47515183 | Msa0603240:CDS | 35.0% | |
| TTAATGAGGAGGGTTCAAAT+GGG | + | chr4_2:47515165-47515184 | Msa0603240:CDS | 35.0% | |
| GTATTTCATCAAGTTCACGA+TGG | + | chr4_2:47515195-47515214 | Msa0603240:CDS | 35.0% | |
| TCTTGTATTTCTTCAGCACT+TGG | - | chr4_2:47515281-47515300 | None:intergenic | 35.0% | |
| GAAGTTGAGAACATACCATT+TGG | - | chr4_2:47515470-47515489 | None:intergenic | 35.0% | |
| TGCCAAAAGTAGTACTCATT+AGG | + | chr4_2:47515591-47515610 | Msa0603240:intron | 35.0% | |
| CCGCTTGCACAATTTAAATA+TGG | - | chr4_2:47515624-47515643 | None:intergenic | 35.0% | |
| CTAGTATTCTACTGTAACGT+TGG | + | chr4_2:47516284-47516303 | Msa0603240:intron | 35.0% | |
| ATTTCATGACTTTGTGGTTG+TGG | - | chr4_2:47516361-47516380 | None:intergenic | 35.0% | |
| !! | GAAGCACTTTTGGATTTTGA+GGG | - | chr4_2:47516393-47516412 | None:intergenic | 35.0% |
| !!! | AGAAGCACTTTTGGATTTTG+AGG | - | chr4_2:47516394-47516413 | None:intergenic | 35.0% |
| GCTGAGAAAGTTATGTCAAA+TGG | + | chr4_2:47516442-47516461 | Msa0603240:CDS | 35.0% | |
| CCATTTGGACAAATAGGTGA+AGG | - | chr4_2:47515455-47515474 | None:intergenic | 40.0% | |
| CCTTCACCTATTTGTCCAAA+TGG | + | chr4_2:47515452-47515471 | Msa0603240:CDS | 40.0% | |
| !!! | TACCTGCAGTAGGTTTTAGA+AGG | + | chr4_2:47516413-47516432 | Msa0603240:CDS | 40.0% |
| !! | TTCCTTCTAAAACCTACTGC+AGG | - | chr4_2:47516418-47516437 | None:intergenic | 40.0% |
| ATCCAACTGGCATATTGGAA+GGG | + | chr4_2:47516578-47516597 | Msa0603240:CDS | 40.0% | |
| CTGAAACAATAGAAGACACC+TGG | - | chr4_2:47516615-47516634 | None:intergenic | 40.0% | |
| AGTTCCACTGATACACATTC+TGG | + | chr4_2:47516646-47516665 | Msa0603240:CDS | 40.0% | |
| AGAACCAGAATGTGTATCAG+TGG | - | chr4_2:47516653-47516672 | None:intergenic | 40.0% | |
| CCATTTGGACAAATAGGTGA+AGG | - | chr4_2:47515455-47515474 | None:intergenic | 40.0% | |
| CCTTCACCTATTTGTCCAAA+TGG | + | chr4_2:47515452-47515471 | Msa0603240:CDS | 40.0% | |
| !!! | TACCTGCAGTAGGTTTTAGA+AGG | + | chr4_2:47516413-47516432 | Msa0603240:CDS | 40.0% |
| !! | TTCCTTCTAAAACCTACTGC+AGG | - | chr4_2:47516418-47516437 | None:intergenic | 40.0% |
| ATCCAACTGGCATATTGGAA+GGG | + | chr4_2:47516578-47516597 | Msa0603240:CDS | 40.0% | |
| CTGAAACAATAGAAGACACC+TGG | - | chr4_2:47516615-47516634 | None:intergenic | 40.0% | |
| AGTTCCACTGATACACATTC+TGG | + | chr4_2:47516646-47516665 | Msa0603240:CDS | 40.0% | |
| AGAACCAGAATGTGTATCAG+TGG | - | chr4_2:47516653-47516672 | None:intergenic | 40.0% | |
| ACTGCTAGGCTTAGAGTGTA+TGG | + | chr4_2:47515305-47515324 | Msa0603240:CDS | 45.0% | |
| AGAGTGTATGGTCACATCGA+AGG | + | chr4_2:47515317-47515336 | Msa0603240:CDS | 45.0% | |
| !! | GGTGAAGGATAAATGGGTTG+AGG | - | chr4_2:47515440-47515459 | None:intergenic | 45.0% |
| ! | AAATTGTGCAAGCGGACTTG+TGG | + | chr4_2:47515629-47515648 | Msa0603240:intron | 45.0% |
| TGTGGTTGTGGTACGCAATA+TGG | - | chr4_2:47516349-47516368 | None:intergenic | 45.0% | |
| !!! | ACTGCAGGTAGAAGCACTTT+TGG | - | chr4_2:47516403-47516422 | None:intergenic | 45.0% |
| ! | AAAGTGCTTCTACCTGCAGT+AGG | + | chr4_2:47516403-47516422 | Msa0603240:CDS | 45.0% |
| TTGTTTCCACTGCATCCAAC+TGG | + | chr4_2:47516565-47516584 | Msa0603240:CDS | 45.0% | |
| AATATGCCAGTTGGATGCAG+TGG | - | chr4_2:47516574-47516593 | None:intergenic | 45.0% | |
| ACTGCATCCAACTGGCATAT+TGG | + | chr4_2:47516573-47516592 | Msa0603240:CDS | 45.0% | |
| CATCCAACTGGCATATTGGA+AGG | + | chr4_2:47516577-47516596 | Msa0603240:CDS | 45.0% | |
| TTCCCTTCCAATATGCCAGT+TGG | - | chr4_2:47516583-47516602 | None:intergenic | 45.0% | |
| ACTGCTAGGCTTAGAGTGTA+TGG | + | chr4_2:47515305-47515324 | Msa0603240:CDS | 45.0% | |
| AGAGTGTATGGTCACATCGA+AGG | + | chr4_2:47515317-47515336 | Msa0603240:CDS | 45.0% | |
| !! | GGTGAAGGATAAATGGGTTG+AGG | - | chr4_2:47515440-47515459 | None:intergenic | 45.0% |
| ! | AAATTGTGCAAGCGGACTTG+TGG | + | chr4_2:47515629-47515648 | Msa0603240:intron | 45.0% |
| TGTGGTTGTGGTACGCAATA+TGG | - | chr4_2:47516349-47516368 | None:intergenic | 45.0% | |
| !!! | ACTGCAGGTAGAAGCACTTT+TGG | - | chr4_2:47516403-47516422 | None:intergenic | 45.0% |
| ! | AAAGTGCTTCTACCTGCAGT+AGG | + | chr4_2:47516403-47516422 | Msa0603240:CDS | 45.0% |
| TTGTTTCCACTGCATCCAAC+TGG | + | chr4_2:47516565-47516584 | Msa0603240:CDS | 45.0% | |
| AATATGCCAGTTGGATGCAG+TGG | - | chr4_2:47516574-47516593 | None:intergenic | 45.0% | |
| ACTGCATCCAACTGGCATAT+TGG | + | chr4_2:47516573-47516592 | Msa0603240:CDS | 45.0% | |
| CATCCAACTGGCATATTGGA+AGG | + | chr4_2:47516577-47516596 | Msa0603240:CDS | 45.0% | |
| TTCCCTTCCAATATGCCAGT+TGG | - | chr4_2:47516583-47516602 | None:intergenic | 45.0% | |
| GGAAGGGAAAACAACTGACC+AGG | + | chr4_2:47516594-47516613 | Msa0603240:CDS | 50.0% | |
| GGAAGGGAAAACAACTGACC+AGG | + | chr4_2:47516594-47516613 | Msa0603240:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 47515140 | 47516765 | 47515140 | ID=Msa0603240;Name=Msa0603240 |
| chr4_2 | mRNA | 47515140 | 47516765 | 47515140 | ID=Msa0603240-mRNA-1;Parent=Msa0603240;Name=Msa0603240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|254 |
| chr4_2 | exon | 47515140 | 47515473 | 47515140 | ID=Msa0603240-mRNA-1:exon:10893;Parent=Msa0603240-mRNA-1 |
| chr4_2 | exon | 47516335 | 47516765 | 47516335 | ID=Msa0603240-mRNA-1:exon:10894;Parent=Msa0603240-mRNA-1 |
| chr4_2 | CDS | 47515140 | 47515473 | 47515140 | ID=Msa0603240-mRNA-1:cds;Parent=Msa0603240-mRNA-1 |
| chr4_2 | CDS | 47516335 | 47516765 | 47516335 | ID=Msa0603240-mRNA-1:cds;Parent=Msa0603240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
