Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604100 | XP_013455733.1 | 61.275 | 204 | 73 | 3 | 23 | 226 | 1 | 198 | 8.09e-77 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604100 | sp|Q4PSU4|AGL61_ARATH | 35.079 | 191 | 108 | 5 | 29 | 209 | 61 | 245 | 3.58e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604100 | A0A072UJ33 | 61.275 | 204 | 73 | 3 | 23 | 226 | 1 | 198 | 3.86e-77 | 241 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0604100 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604100 | MtrunA17_Chr4g0025531 | 61.275 | 204 | 73 | 3 | 23 | 226 | 1 | 198 | 7.44e-81 | 241 |
| Msa0604100 | MtrunA17_Chr3g0135891 | 67.059 | 85 | 27 | 1 | 128 | 212 | 16 | 99 | 1.18e-34 | 121 |
| Msa0604100 | MtrunA17_Chr3g0099421 | 36.723 | 177 | 95 | 4 | 13 | 172 | 16 | 192 | 5.90e-24 | 96.3 |
| Msa0604100 | MtrunA17_Chr1g0206701 | 33.482 | 224 | 117 | 7 | 23 | 214 | 1 | 224 | 1.67e-23 | 94.7 |
| Msa0604100 | MtrunA17_Chr1g0149391 | 38.150 | 173 | 87 | 6 | 23 | 178 | 1 | 170 | 7.45e-23 | 92.8 |
| Msa0604100 | MtrunA17_Chr2g0292791 | 38.323 | 167 | 86 | 5 | 23 | 172 | 1 | 167 | 2.35e-22 | 91.7 |
| Msa0604100 | MtrunA17_Chr1g0208561 | 33.133 | 166 | 98 | 3 | 23 | 178 | 1 | 163 | 5.40e-22 | 90.5 |
| Msa0604100 | MtrunA17_Chr1g0206991 | 37.267 | 161 | 84 | 5 | 23 | 166 | 1 | 161 | 5.81e-22 | 89.4 |
| Msa0604100 | MtrunA17_Chr1g0188671 | 30.734 | 218 | 120 | 5 | 2 | 209 | 25 | 221 | 9.96e-22 | 90.9 |
| Msa0604100 | MtrunA17_Chr3g0089141 | 33.133 | 166 | 98 | 3 | 23 | 178 | 1 | 163 | 1.22e-21 | 89.4 |
| Msa0604100 | MtrunA17_Chr8g0355091 | 36.709 | 158 | 87 | 4 | 23 | 170 | 1 | 155 | 1.88e-21 | 89.4 |
| Msa0604100 | MtrunA17_Chr5g0422421 | 33.178 | 214 | 109 | 9 | 23 | 225 | 1 | 191 | 2.17e-21 | 89.0 |
| Msa0604100 | MtrunA17_Chr1g0206721 | 38.686 | 137 | 74 | 2 | 23 | 149 | 1 | 137 | 1.02e-20 | 87.4 |
| Msa0604100 | MtrunA17_Chr1g0208581 | 32.530 | 166 | 99 | 4 | 23 | 178 | 1 | 163 | 3.18e-20 | 85.9 |
| Msa0604100 | MtrunA17_Chr5g0419601 | 30.500 | 200 | 112 | 8 | 23 | 211 | 1 | 184 | 3.28e-20 | 85.9 |
| Msa0604100 | MtrunA17_Chr1g0187361 | 31.818 | 176 | 104 | 4 | 23 | 185 | 1 | 173 | 3.49e-20 | 85.9 |
| Msa0604100 | MtrunA17_Chr2g0317481 | 31.250 | 160 | 99 | 3 | 23 | 173 | 1 | 158 | 4.21e-20 | 85.5 |
| Msa0604100 | MtrunA17_Chr2g0317451 | 31.250 | 160 | 99 | 3 | 23 | 173 | 1 | 158 | 4.52e-20 | 85.5 |
| Msa0604100 | MtrunA17_Chr3g0099411 | 41.322 | 121 | 61 | 2 | 23 | 133 | 1 | 121 | 1.18e-19 | 84.0 |
| Msa0604100 | MtrunA17_Chr3g0119901 | 33.133 | 166 | 96 | 4 | 23 | 177 | 1 | 162 | 1.23e-19 | 83.6 |
| Msa0604100 | MtrunA17_Chr8g0379021 | 32.298 | 161 | 96 | 5 | 26 | 178 | 7 | 162 | 2.95e-19 | 82.0 |
| Msa0604100 | MtrunA17_Chr2g0333981 | 31.447 | 159 | 100 | 3 | 26 | 178 | 7 | 162 | 3.52e-19 | 81.6 |
| Msa0604100 | MtrunA17_Chr3g0085241 | 31.651 | 218 | 118 | 8 | 26 | 217 | 36 | 248 | 4.46e-19 | 83.2 |
| Msa0604100 | MtrunA17_Chr5g0422941 | 28.017 | 232 | 131 | 8 | 23 | 220 | 1 | 230 | 3.86e-18 | 80.5 |
| Msa0604100 | MtrunA17_Chr2g0325971 | 32.298 | 161 | 92 | 4 | 23 | 166 | 1 | 161 | 7.31e-18 | 79.3 |
| Msa0604100 | MtrunA17_Chr2g0300421 | 45.833 | 72 | 39 | 0 | 23 | 94 | 1 | 72 | 1.68e-16 | 74.7 |
| Msa0604100 | MtrunA17_Chr4g0052081 | 50.725 | 69 | 34 | 0 | 31 | 99 | 2 | 70 | 4.82e-16 | 73.6 |
| Msa0604100 | MtrunA17_Chr3g0089151 | 45.833 | 72 | 39 | 0 | 23 | 94 | 1 | 72 | 5.97e-16 | 72.0 |
| Msa0604100 | MtrunA17_Chr3g0111841 | 53.448 | 58 | 27 | 0 | 37 | 94 | 2 | 59 | 2.16e-15 | 68.9 |
| Msa0604100 | MtrunA17_Chr4g0052061 | 34.028 | 144 | 83 | 4 | 31 | 173 | 2 | 134 | 2.40e-15 | 70.9 |
| Msa0604100 | MtrunA17_Chr8g0356071 | 34.513 | 113 | 61 | 2 | 31 | 137 | 2 | 107 | 7.49e-15 | 69.7 |
| Msa0604100 | MtrunA17_Chr8g0345001 | 31.288 | 163 | 96 | 3 | 30 | 181 | 17 | 174 | 2.12e-14 | 68.9 |
| Msa0604100 | MtrunA17_Chr1g0169761 | 36.066 | 122 | 62 | 3 | 31 | 140 | 2 | 119 | 2.93e-14 | 68.6 |
| Msa0604100 | MtrunA17_Chr1g0206691 | 29.730 | 185 | 111 | 6 | 40 | 207 | 1 | 183 | 3.27e-14 | 69.3 |
| Msa0604100 | MtrunA17_Chr8g0376821 | 41.250 | 80 | 46 | 1 | 31 | 109 | 2 | 81 | 4.40e-14 | 68.2 |
| Msa0604100 | MtrunA17_Chr2g0300441 | 30.120 | 166 | 99 | 4 | 23 | 171 | 1 | 166 | 4.40e-14 | 69.3 |
| Msa0604100 | MtrunA17_Chr8g0357771 | 40.278 | 72 | 43 | 0 | 31 | 102 | 2 | 73 | 3.38e-13 | 65.9 |
| Msa0604100 | MtrunA17_Chr1g0180591 | 35.294 | 119 | 67 | 3 | 31 | 140 | 2 | 119 | 6.56e-13 | 65.1 |
| Msa0604100 | MtrunA17_Chr1g0175611 | 32.308 | 130 | 71 | 3 | 31 | 159 | 2 | 115 | 6.63e-13 | 64.7 |
| Msa0604100 | MtrunA17_Chr4g0074101 | 38.889 | 72 | 44 | 0 | 31 | 102 | 2 | 73 | 2.10e-12 | 63.9 |
| Msa0604100 | MtrunA17_Chr1g0159661 | 50.000 | 64 | 32 | 0 | 31 | 94 | 2 | 65 | 4.81e-12 | 62.8 |
| Msa0604100 | MtrunA17_Chr4g0071601 | 31.325 | 166 | 101 | 5 | 26 | 178 | 7 | 172 | 1.51e-11 | 61.2 |
| Msa0604100 | MtrunA17_Chr4g0018951 | 29.921 | 127 | 83 | 4 | 48 | 170 | 29 | 153 | 3.14e-11 | 60.1 |
| Msa0604100 | MtrunA17_Chr1g0175601 | 40.000 | 65 | 39 | 0 | 31 | 95 | 2 | 66 | 3.67e-11 | 60.1 |
| Msa0604100 | MtrunA17_Chr4g0057151 | 34.043 | 141 | 79 | 4 | 32 | 170 | 3 | 131 | 4.19e-11 | 60.5 |
| Msa0604100 | MtrunA17_Chr1g0187351 | 38.462 | 65 | 40 | 0 | 40 | 104 | 1 | 65 | 4.25e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604100 | AT4G36590.1 | 35.928 | 167 | 90 | 3 | 27 | 178 | 3 | 167 | 4.68e-23 | 94.0 |
| Msa0604100 | AT1G29962.1 | 34.659 | 176 | 97 | 4 | 23 | 183 | 1 | 173 | 2.12e-21 | 88.2 |
| Msa0604100 | AT2G24840.1 | 35.079 | 191 | 108 | 5 | 29 | 209 | 61 | 245 | 3.64e-21 | 89.4 |
| Msa0604100 | AT1G28460.1 | 34.682 | 173 | 98 | 4 | 23 | 183 | 1 | 170 | 1.08e-19 | 83.6 |
| Msa0604100 | AT1G01530.1 | 38.843 | 121 | 65 | 3 | 27 | 142 | 3 | 119 | 9.45e-18 | 79.7 |
| Msa0604100 | AT2G34440.1 | 31.818 | 176 | 99 | 6 | 31 | 196 | 2 | 166 | 9.55e-18 | 78.2 |
| Msa0604100 | AT5G60440.1 | 50.000 | 78 | 38 | 1 | 27 | 104 | 3 | 79 | 1.39e-17 | 80.1 |
| Msa0604100 | AT1G28450.1 | 32.184 | 174 | 100 | 4 | 23 | 181 | 1 | 171 | 1.34e-16 | 75.5 |
| Msa0604100 | AT3G04100.1 | 41.304 | 92 | 51 | 1 | 21 | 112 | 4 | 92 | 3.04e-16 | 75.1 |
| Msa0604100 | AT1G65360.1 | 33.036 | 112 | 71 | 1 | 31 | 138 | 7 | 118 | 3.82e-15 | 72.4 |
| Msa0604100 | AT3G66656.1 | 47.692 | 65 | 34 | 0 | 31 | 95 | 2 | 66 | 7.65e-14 | 67.8 |
| Msa0604100 | AT1G47760.1 | 39.506 | 81 | 46 | 1 | 31 | 111 | 2 | 79 | 3.54e-12 | 63.5 |
| Msa0604100 | AT4G11880.2 | 49.254 | 67 | 32 | 1 | 32 | 98 | 3 | 67 | 8.05e-11 | 59.7 |
| Msa0604100 | AT4G11880.3 | 49.254 | 67 | 32 | 1 | 32 | 98 | 3 | 67 | 8.05e-11 | 59.7 |
| Msa0604100 | AT5G10140.2 | 48.214 | 56 | 29 | 0 | 31 | 86 | 2 | 57 | 9.45e-11 | 59.3 |
Find 34 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAACAACGGTTATGAAAT+TGG | 0.252713 | 4_2:-49201756 | Msa0604100:CDS |
| ACAAATCCTCCTTATGTCTT+TGG | 0.256858 | 4_2:-49201783 | Msa0604100:CDS |
| TCAGGAAAGTTTGAAGGCTT+TGG | 0.277217 | 4_2:-49202110 | Msa0604100:CDS |
| TTCTTCTCTTAGTACTATCT+TGG | 0.287087 | 4_2:-49202476 | Msa0604100:CDS |
| GAAGGTTCTCCATAACAATA+TGG | 0.353627 | 4_2:+49202268 | None:intergenic |
| CTTTGGAAAGTTATGGCTAT+TGG | 0.358280 | 4_2:-49202093 | Msa0604100:CDS |
| AGACATAAGGAGGATTTGTT+TGG | 0.360683 | 4_2:+49201787 | None:intergenic |
| AAAATTGGACACATCTTTAG+TGG | 0.370003 | 4_2:-49202023 | Msa0604100:CDS |
| TCTGAATTATCAACACTTTG+TGG | 0.392582 | 4_2:-49202331 | Msa0604100:CDS |
| TTGAAGGCTTTGGAAAGTTA+TGG | 0.393387 | 4_2:-49202100 | Msa0604100:CDS |
| GCATGTTGCGGAAGCTCATC+AGG | 0.403902 | 4_2:-49202128 | Msa0604100:CDS |
| CTTGCTATGGATTGAGAAGA+AGG | 0.408194 | 4_2:+49202250 | None:intergenic |
| GCAGGAAAACCATATTGTTA+TGG | 0.420932 | 4_2:-49202277 | Msa0604100:CDS |
| CTGAATTATCAACACTTTGT+GGG | 0.424852 | 4_2:-49202330 | Msa0604100:CDS |
| TTTAATTCTTCTTCTACTGA+AGG | 0.426435 | 4_2:+49202205 | None:intergenic |
| TAGTACTATCTTGGTTAAGA+TGG | 0.426571 | 4_2:-49202467 | Msa0604100:CDS |
| CTACCTCTTGATGTCCTCTT+CGG | 0.429458 | 4_2:+49202442 | None:intergenic |
| CTTCAAAATTGTTCTTGCTA+TGG | 0.431100 | 4_2:+49202237 | None:intergenic |
| ATACTTATTATTTCTCCAGC+AGG | 0.450183 | 4_2:-49202295 | Msa0604100:CDS |
| AATTTCATAACCGTTGTTGT+TGG | 0.462889 | 4_2:+49201758 | None:intergenic |
| TTGTTGGCTCCAAAGACATA+AGG | 0.476399 | 4_2:+49201774 | None:intergenic |
| TTAATTCTTCTTCTACTGAA+GGG | 0.481788 | 4_2:+49202206 | None:intergenic |
| AGCTCATCAGGAAAGTTTGA+AGG | 0.487303 | 4_2:-49202116 | Msa0604100:CDS |
| TCTTGCATAGACGAACTGAA+TGG | 0.536180 | 4_2:-49201813 | Msa0604100:CDS |
| ATAAGTAGTGTCTTAAGCAA+TGG | 0.548667 | 4_2:-49201983 | Msa0604100:CDS |
| TGAATTATCAACACTTTGTG+GGG | 0.569118 | 4_2:-49202329 | Msa0604100:CDS |
| GGAGGAGAGATTAATCCTCA+TGG | 0.604055 | 4_2:-49201962 | Msa0604100:intron |
| AGTAGTGTCTTAAGCAATGG+AGG | 0.611596 | 4_2:-49201980 | Msa0604100:CDS |
| TTGGCTCCAAAGACATAAGG+AGG | 0.611952 | 4_2:+49201777 | None:intergenic |
| GTCTTTGGAGCCAACAACAA+CGG | 0.615277 | 4_2:-49201768 | Msa0604100:CDS |
| ACAAAGTGTTGATAATTCAG+AGG | 0.616841 | 4_2:+49202333 | None:intergenic |
| TTTGGATGAAAAGCATGTTG+CGG | 0.629913 | 4_2:-49202140 | Msa0604100:CDS |
| TGGTTAAGATGGCTCCGAAG+AGG | 0.660173 | 4_2:-49202456 | Msa0604100:CDS |
| GCTCCGAAGAGGACATCAAG+AGG | 0.673948 | 4_2:-49202445 | Msa0604100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTTATTTATGAAAAAG+TGG | - | chr4_2:49202368-49202387 | Msa0604100:CDS | 15.0% |
| !! | CTAATTTATTTATGAAAAAG+TGG | - | chr4_2:49202368-49202387 | Msa0604100:CDS | 15.0% |
| !! | TTATGACCAGTTAAAAAAAT+TGG | - | chr4_2:49202189-49202208 | Msa0604100:CDS | 20.0% |
| !!! | TAGACTCTTCTAAAAAAAAT+TGG | + | chr4_2:49202516-49202535 | None:intergenic | 20.0% |
| !! | TTATGACCAGTTAAAAAAAT+TGG | - | chr4_2:49202189-49202208 | Msa0604100:CDS | 20.0% |
| !!! | TAGACTCTTCTAAAAAAAAT+TGG | + | chr4_2:49202516-49202535 | None:intergenic | 20.0% |
| ! | TTAATTCTTCTTCTACTGAA+GGG | + | chr4_2:49202024-49202043 | None:intergenic | 25.0% |
| ! | TTTAATTCTTCTTCTACTGA+AGG | + | chr4_2:49202025-49202044 | None:intergenic | 25.0% |
| !!! | CATCATTTTTTGTGTTAACT+TGG | + | chr4_2:49202063-49202082 | None:intergenic | 25.0% |
| !!! | ATGTGTCCAATTTTTTTAAC+TGG | + | chr4_2:49202198-49202217 | None:intergenic | 25.0% |
| ! | TTAATTCTTCTTCTACTGAA+GGG | + | chr4_2:49202024-49202043 | None:intergenic | 25.0% |
| ! | TTTAATTCTTCTTCTACTGA+AGG | + | chr4_2:49202025-49202044 | None:intergenic | 25.0% |
| !!! | CATCATTTTTTGTGTTAACT+TGG | + | chr4_2:49202063-49202082 | None:intergenic | 25.0% |
| !!! | ATGTGTCCAATTTTTTTAAC+TGG | + | chr4_2:49202198-49202217 | None:intergenic | 25.0% |
| TTCTTCTCTTAGTACTATCT+TGG | - | chr4_2:49201751-49201770 | Msa0604100:CDS | 30.0% | |
| TAGTACTATCTTGGTTAAGA+TGG | - | chr4_2:49201760-49201779 | Msa0604100:CDS | 30.0% | |
| !! | ACAAAGTGTTGATAATTCAG+AGG | + | chr4_2:49201897-49201916 | None:intergenic | 30.0% |
| TCTGAATTATCAACACTTTG+TGG | - | chr4_2:49201896-49201915 | Msa0604100:intron | 30.0% | |
| CTGAATTATCAACACTTTGT+GGG | - | chr4_2:49201897-49201916 | Msa0604100:intron | 30.0% | |
| TGAATTATCAACACTTTGTG+GGG | - | chr4_2:49201898-49201917 | Msa0604100:intron | 30.0% | |
| ! | ATACTTATTATTTCTCCAGC+AGG | - | chr4_2:49201932-49201951 | Msa0604100:intron | 30.0% |
| CTTCAAAATTGTTCTTGCTA+TGG | + | chr4_2:49201993-49202012 | None:intergenic | 30.0% | |
| ! | CACAAAAAATGATGAGCTTT+TGG | - | chr4_2:49202069-49202088 | Msa0604100:CDS | 30.0% |
| AAAATTGGACACATCTTTAG+TGG | - | chr4_2:49202204-49202223 | Msa0604100:CDS | 30.0% | |
| ATAAGTAGTGTCTTAAGCAA+TGG | - | chr4_2:49202244-49202263 | Msa0604100:CDS | 30.0% | |
| AATTTCATAACCGTTGTTGT+TGG | + | chr4_2:49202472-49202491 | None:intergenic | 30.0% | |
| AACAACAACGGTTATGAAAT+TGG | - | chr4_2:49202471-49202490 | Msa0604100:CDS | 30.0% | |
| TTCTTCTCTTAGTACTATCT+TGG | - | chr4_2:49201751-49201770 | Msa0604100:CDS | 30.0% | |
| TAGTACTATCTTGGTTAAGA+TGG | - | chr4_2:49201760-49201779 | Msa0604100:CDS | 30.0% | |
| !! | ACAAAGTGTTGATAATTCAG+AGG | + | chr4_2:49201897-49201916 | None:intergenic | 30.0% |
| TCTGAATTATCAACACTTTG+TGG | - | chr4_2:49201896-49201915 | Msa0604100:intron | 30.0% | |
| CTGAATTATCAACACTTTGT+GGG | - | chr4_2:49201897-49201916 | Msa0604100:intron | 30.0% | |
| TGAATTATCAACACTTTGTG+GGG | - | chr4_2:49201898-49201917 | Msa0604100:intron | 30.0% | |
| ! | ATACTTATTATTTCTCCAGC+AGG | - | chr4_2:49201932-49201951 | Msa0604100:intron | 30.0% |
| CTTCAAAATTGTTCTTGCTA+TGG | + | chr4_2:49201993-49202012 | None:intergenic | 30.0% | |
| ! | CACAAAAAATGATGAGCTTT+TGG | - | chr4_2:49202069-49202088 | Msa0604100:CDS | 30.0% |
| AAAATTGGACACATCTTTAG+TGG | - | chr4_2:49202204-49202223 | Msa0604100:CDS | 30.0% | |
| ATAAGTAGTGTCTTAAGCAA+TGG | - | chr4_2:49202244-49202263 | Msa0604100:CDS | 30.0% | |
| AATTTCATAACCGTTGTTGT+TGG | + | chr4_2:49202472-49202491 | None:intergenic | 30.0% | |
| AACAACAACGGTTATGAAAT+TGG | - | chr4_2:49202471-49202490 | Msa0604100:CDS | 30.0% | |
| ! | GCATTTTCAAAGAGAAAGTC+TGG | - | chr4_2:49201857-49201876 | Msa0604100:intron | 35.0% |
| ! | TAACAATATGGTTTTCCTGC+TGG | + | chr4_2:49201950-49201969 | None:intergenic | 35.0% |
| GCAGGAAAACCATATTGTTA+TGG | - | chr4_2:49201950-49201969 | Msa0604100:intron | 35.0% | |
| GAAGGTTCTCCATAACAATA+TGG | + | chr4_2:49201962-49201981 | None:intergenic | 35.0% | |
| ! | TTTGGATGAAAAGCATGTTG+CGG | - | chr4_2:49202087-49202106 | Msa0604100:CDS | 35.0% |
| !! | TTGAAGGCTTTGGAAAGTTA+TGG | - | chr4_2:49202127-49202146 | Msa0604100:CDS | 35.0% |
| ! | CTTTGGAAAGTTATGGCTAT+TGG | - | chr4_2:49202134-49202153 | Msa0604100:CDS | 35.0% |
| TGCACATCTTCTAATCAACT+TGG | - | chr4_2:49202292-49202311 | Msa0604100:CDS | 35.0% | |
| ! | AGACATAAGGAGGATTTGTT+TGG | + | chr4_2:49202443-49202462 | None:intergenic | 35.0% |
| ACAAATCCTCCTTATGTCTT+TGG | - | chr4_2:49202444-49202463 | Msa0604100:CDS | 35.0% | |
| ! | GCATTTTCAAAGAGAAAGTC+TGG | - | chr4_2:49201857-49201876 | Msa0604100:intron | 35.0% |
| ! | TAACAATATGGTTTTCCTGC+TGG | + | chr4_2:49201950-49201969 | None:intergenic | 35.0% |
| GCAGGAAAACCATATTGTTA+TGG | - | chr4_2:49201950-49201969 | Msa0604100:intron | 35.0% | |
| GAAGGTTCTCCATAACAATA+TGG | + | chr4_2:49201962-49201981 | None:intergenic | 35.0% | |
| ! | TTTGGATGAAAAGCATGTTG+CGG | - | chr4_2:49202087-49202106 | Msa0604100:CDS | 35.0% |
| !! | TTGAAGGCTTTGGAAAGTTA+TGG | - | chr4_2:49202127-49202146 | Msa0604100:CDS | 35.0% |
| ! | CTTTGGAAAGTTATGGCTAT+TGG | - | chr4_2:49202134-49202153 | Msa0604100:CDS | 35.0% |
| TGCACATCTTCTAATCAACT+TGG | - | chr4_2:49202292-49202311 | Msa0604100:CDS | 35.0% | |
| ! | AGACATAAGGAGGATTTGTT+TGG | + | chr4_2:49202443-49202462 | None:intergenic | 35.0% |
| ACAAATCCTCCTTATGTCTT+TGG | - | chr4_2:49202444-49202463 | Msa0604100:CDS | 35.0% | |
| ! | CTTGCTATGGATTGAGAAGA+AGG | + | chr4_2:49201980-49201999 | None:intergenic | 40.0% |
| AGCTCATCAGGAAAGTTTGA+AGG | - | chr4_2:49202111-49202130 | Msa0604100:CDS | 40.0% | |
| TCAGGAAAGTTTGAAGGCTT+TGG | - | chr4_2:49202117-49202136 | Msa0604100:CDS | 40.0% | |
| AGTAGTGTCTTAAGCAATGG+AGG | - | chr4_2:49202247-49202266 | Msa0604100:CDS | 40.0% | |
| TCTTGCATAGACGAACTGAA+TGG | - | chr4_2:49202414-49202433 | Msa0604100:CDS | 40.0% | |
| !! | TTGTTGGCTCCAAAGACATA+AGG | + | chr4_2:49202456-49202475 | None:intergenic | 40.0% |
| ! | CTTGCTATGGATTGAGAAGA+AGG | + | chr4_2:49201980-49201999 | None:intergenic | 40.0% |
| AGCTCATCAGGAAAGTTTGA+AGG | - | chr4_2:49202111-49202130 | Msa0604100:CDS | 40.0% | |
| TCAGGAAAGTTTGAAGGCTT+TGG | - | chr4_2:49202117-49202136 | Msa0604100:CDS | 40.0% | |
| AGTAGTGTCTTAAGCAATGG+AGG | - | chr4_2:49202247-49202266 | Msa0604100:CDS | 40.0% | |
| TCTTGCATAGACGAACTGAA+TGG | - | chr4_2:49202414-49202433 | Msa0604100:CDS | 40.0% | |
| !! | TTGTTGGCTCCAAAGACATA+AGG | + | chr4_2:49202456-49202475 | None:intergenic | 40.0% |
| CTACCTCTTGATGTCCTCTT+CGG | + | chr4_2:49201788-49201807 | None:intergenic | 45.0% | |
| GGAGGAGAGATTAATCCTCA+TGG | - | chr4_2:49202265-49202284 | Msa0604100:CDS | 45.0% | |
| TTGGCTCCAAAGACATAAGG+AGG | + | chr4_2:49202453-49202472 | None:intergenic | 45.0% | |
| !! | GTCTTTGGAGCCAACAACAA+CGG | - | chr4_2:49202459-49202478 | Msa0604100:CDS | 45.0% |
| CTACCTCTTGATGTCCTCTT+CGG | + | chr4_2:49201788-49201807 | None:intergenic | 45.0% | |
| GGAGGAGAGATTAATCCTCA+TGG | - | chr4_2:49202265-49202284 | Msa0604100:CDS | 45.0% | |
| TTGGCTCCAAAGACATAAGG+AGG | + | chr4_2:49202453-49202472 | None:intergenic | 45.0% | |
| !! | GTCTTTGGAGCCAACAACAA+CGG | - | chr4_2:49202459-49202478 | Msa0604100:CDS | 45.0% |
| TGGTTAAGATGGCTCCGAAG+AGG | - | chr4_2:49201771-49201790 | Msa0604100:CDS | 50.0% | |
| GAAGATGTGCACGTACCATG+AGG | + | chr4_2:49202283-49202302 | None:intergenic | 50.0% | |
| TGGTTAAGATGGCTCCGAAG+AGG | - | chr4_2:49201771-49201790 | Msa0604100:CDS | 50.0% | |
| GAAGATGTGCACGTACCATG+AGG | + | chr4_2:49202283-49202302 | None:intergenic | 50.0% | |
| GCTCCGAAGAGGACATCAAG+AGG | - | chr4_2:49201782-49201801 | Msa0604100:CDS | 55.0% | |
| GCATGTTGCGGAAGCTCATC+AGG | - | chr4_2:49202099-49202118 | Msa0604100:CDS | 55.0% | |
| GCTCCGAAGAGGACATCAAG+AGG | - | chr4_2:49201782-49201801 | Msa0604100:CDS | 55.0% | |
| GCATGTTGCGGAAGCTCATC+AGG | - | chr4_2:49202099-49202118 | Msa0604100:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 49201713 | 49202536 | 49201713 | ID=Msa0604100;Name=Msa0604100 |
| chr4_2 | mRNA | 49201713 | 49202536 | 49201713 | ID=Msa0604100-mRNA-1;Parent=Msa0604100;Name=Msa0604100-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|233 |
| chr4_2 | exon | 49201963 | 49202536 | 49201963 | ID=Msa0604100-mRNA-1:exon:11394;Parent=Msa0604100-mRNA-1 |
| chr4_2 | exon | 49201713 | 49201840 | 49201713 | ID=Msa0604100-mRNA-1:exon:11393;Parent=Msa0604100-mRNA-1 |
| chr4_2 | CDS | 49201963 | 49202536 | 49201963 | ID=Msa0604100-mRNA-1:cds;Parent=Msa0604100-mRNA-1 |
| chr4_2 | CDS | 49201713 | 49201840 | 49201713 | ID=Msa0604100-mRNA-1:cds;Parent=Msa0604100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
