Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604720 | XP_003606840.1 | 84.727 | 275 | 38 | 2 | 1 | 273 | 1 | 273 | 8.87e-149 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604720 | sp|Q1PES7|Y3622_ARATH | 29.565 | 115 | 77 | 2 | 9 | 123 | 8 | 118 | 7.20e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604720 | G7JEX9 | 84.727 | 275 | 38 | 2 | 1 | 273 | 1 | 273 | 4.24e-149 | 427 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0604720 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604720 | MtrunA17_Chr4g0033941 | 84.483 | 232 | 32 | 2 | 44 | 273 | 1 | 230 | 2.70e-121 | 345 |
| Msa0604720 | MtrunA17_Chr4g0033951 | 60.488 | 205 | 61 | 9 | 1 | 202 | 1 | 188 | 1.29e-67 | 208 |
| Msa0604720 | MtrunA17_Chr1g0154041 | 32.673 | 101 | 66 | 1 | 8 | 108 | 13 | 111 | 5.67e-15 | 74.7 |
| Msa0604720 | MtrunA17_Chr1g0154161 | 32.540 | 126 | 78 | 3 | 23 | 143 | 43 | 166 | 4.62e-13 | 68.2 |
| Msa0604720 | MtrunA17_Chr1g0154211 | 33.981 | 103 | 65 | 2 | 23 | 124 | 35 | 135 | 7.87e-12 | 64.7 |
| Msa0604720 | MtrunA17_Chr5g0419201 | 31.068 | 103 | 69 | 1 | 5 | 107 | 11 | 111 | 3.15e-11 | 61.2 |
| Msa0604720 | MtrunA17_Chr7g0233571 | 35.714 | 98 | 60 | 3 | 11 | 107 | 10 | 105 | 5.85e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604720 | AT3G06220.1 | 29.565 | 115 | 77 | 2 | 9 | 123 | 8 | 118 | 7.32e-13 | 65.9 |
Find 42 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTTGGCCGCGATTAT+TGG | 0.150855 | 4_2:-50342057 | None:intergenic |
| TTCTTTGATGATTGCGAAAA+AGG | 0.192611 | 4_2:-50341126 | None:intergenic |
| AGTGATGCTTGAAGAGTTAT+TGG | 0.212786 | 4_2:+50341906 | Msa0604720:CDS |
| ATTATTCTGGTAGGCTCTTC+TGG | 0.236095 | 4_2:+50341799 | Msa0604720:CDS |
| ACAAGAGATTGTTATGGATT+TGG | 0.243204 | 4_2:+50341750 | Msa0604720:CDS |
| CATCAATGTTGCTGCAGCTT+TGG | 0.244862 | 4_2:-50342313 | None:intergenic |
| AATGACATTTATCTGCAAAT+TGG | 0.269252 | 4_2:+50341856 | Msa0604720:CDS |
| TGCAGCAACAATCATGTCTA+TGG | 0.269290 | 4_2:+50342236 | Msa0604720:CDS |
| CAAGAGATTGTTATGGATTT+GGG | 0.277836 | 4_2:+50341751 | Msa0604720:CDS |
| GAAGAATGCATTAATTATTC+TGG | 0.319956 | 4_2:+50341786 | Msa0604720:CDS |
| CAAAGCTGCAGCAACATTGA+TGG | 0.380913 | 4_2:+50342314 | Msa0604720:CDS |
| TAATGGGGAGAACAAGTTCC+AGG | 0.400809 | 4_2:+50341939 | Msa0604720:CDS |
| CTGGTGAGAGAGTATGCTTC+AGG | 0.408630 | 4_2:+50342199 | Msa0604720:CDS |
| TTCTTAAAGCACTCACTCTC+AGG | 0.419431 | 4_2:-50342108 | None:intergenic |
| TAGGCTCTTCTGGTGAGAAA+TGG | 0.425803 | 4_2:+50341809 | Msa0604720:CDS |
| TGGTCTACCCCTCTTTCTCT+TGG | 0.432293 | 4_2:-50342070 | None:intergenic |
| GAGAAAATCCTGCTGGTGAG+AGG | 0.446423 | 4_2:+50342361 | Msa0604720:CDS |
| AGTACCACAAGAGATTGTTA+TGG | 0.452327 | 4_2:+50341744 | Msa0604720:CDS |
| CAGTTAACTAAAATAACAAC+TGG | 0.461802 | 4_2:-50342468 | None:intergenic |
| AGGCTCTTCTGGTGAGAAAT+GGG | 0.468490 | 4_2:+50341810 | Msa0604720:CDS |
| ACATTTATCTGCAAATTGGT+TGG | 0.488288 | 4_2:+50341860 | Msa0604720:CDS |
| TGGATTTGGGTGAAGAGTTG+TGG | 0.489164 | 4_2:+50341764 | Msa0604720:CDS |
| ATTGTGGTTAAGAGAAATGA+TGG | 0.499727 | 4_2:+50342156 | Msa0604720:CDS |
| TCTTGTACATTCTTGAAGCA+TGG | 0.500756 | 4_2:-50341994 | None:intergenic |
| ATGCATACCCTCTCACCAGC+AGG | 0.531521 | 4_2:-50342369 | None:intergenic |
| TAATCGCGGCCAAGAGAAAG+AGG | 0.543608 | 4_2:+50342061 | Msa0604720:CDS |
| ACTAAAATAACAACTGGAGC+AGG | 0.545360 | 4_2:-50342462 | None:intergenic |
| AATCGTGGCTGAGAGAAAGA+AGG | 0.556974 | 4_2:+50342422 | Msa0604720:CDS |
| AGGCTTGAACATCAACCGCC+TGG | 0.566829 | 4_2:+50341148 | Msa0604720:CDS |
| AATGCATTAATTATTCTGGT+AGG | 0.572311 | 4_2:+50341790 | Msa0604720:CDS |
| AAGCATACTCTCTCACCAGC+AGG | 0.573273 | 4_2:-50342195 | None:intergenic |
| TGCAGCAGCTCCAATAATCG+CGG | 0.576668 | 4_2:+50342047 | Msa0604720:CDS |
| GCAGCAACAATCATGTCTAT+GGG | 0.585892 | 4_2:+50342237 | Msa0604720:CDS |
| AGAAAATCCTGCTGGTGAGA+GGG | 0.595818 | 4_2:+50342362 | Msa0604720:CDS |
| ATTGATGGCTGCGATAAACA+AGG | 0.598401 | 4_2:+50342329 | Msa0604720:CDS |
| AGAACAAGAGAAAATCCTGC+TGG | 0.600152 | 4_2:+50342354 | Msa0604720:CDS |
| AATCGCGGCCAAGAGAAAGA+GGG | 0.619676 | 4_2:+50342062 | Msa0604720:CDS |
| ATCGTGGCTGAGAGAAAGAA+GGG | 0.634544 | 4_2:+50342423 | Msa0604720:CDS |
| AAATCCATAACAATCTCTTG+TGG | 0.653407 | 4_2:-50341748 | None:intergenic |
| ATCGCGGCCAAGAGAAAGAG+GGG | 0.679157 | 4_2:+50342063 | Msa0604720:CDS |
| AAAATCTGCAGAAACAATCG+TGG | 0.680787 | 4_2:+50342407 | Msa0604720:CDS |
| TTGATGGCTGCGATAAACAA+GGG | 0.688503 | 4_2:+50342330 | Msa0604720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAGAAATACTTTGTT+TGG | + | chr4_2:50341254-50341273 | Msa0604720:intron | 15.0% |
| !! | ATAATAAGAAATACTTTGTT+TGG | + | chr4_2:50341254-50341273 | Msa0604720:intron | 15.0% |
| !!! | TTTTAGTTATACATAGACAT+AGG | + | chr4_2:50341460-50341479 | Msa0604720:intron | 20.0% |
| !!! | TTATTGGTTTTCACATATAA+TGG | + | chr4_2:50341922-50341941 | Msa0604720:CDS | 20.0% |
| !!! | TATTGGTTTTCACATATAAT+GGG | + | chr4_2:50341923-50341942 | Msa0604720:CDS | 20.0% |
| !!! | TTTTAGTTATACATAGACAT+AGG | + | chr4_2:50341460-50341479 | Msa0604720:intron | 20.0% |
| !!! | TTATTGGTTTTCACATATAA+TGG | + | chr4_2:50341922-50341941 | Msa0604720:CDS | 20.0% |
| !!! | TATTGGTTTTCACATATAAT+GGG | + | chr4_2:50341923-50341942 | Msa0604720:CDS | 20.0% |
| ! | AGTACGAATAAATTATTACC+AGG | - | chr4_2:50341169-50341188 | None:intergenic | 25.0% |
| ! | GATGATGACAACTAATTTAT+AGG | + | chr4_2:50341282-50341301 | Msa0604720:intron | 25.0% |
| !!! | GGAAAAGTGAGTTTTTTTAA+AGG | + | chr4_2:50341303-50341322 | Msa0604720:intron | 25.0% |
| ! | TTATCTACTAGAGACAAATT+GGG | + | chr4_2:50341421-50341440 | Msa0604720:intron | 25.0% |
| ! | TTAGACTATTTGATATCGAT+TGG | + | chr4_2:50341590-50341609 | Msa0604720:intron | 25.0% |
| ! | GAAGAATGCATTAATTATTC+TGG | + | chr4_2:50341786-50341805 | Msa0604720:CDS | 25.0% |
| ! | AATGCATTAATTATTCTGGT+AGG | + | chr4_2:50341790-50341809 | Msa0604720:CDS | 25.0% |
| ! | AATGACATTTATCTGCAAAT+TGG | + | chr4_2:50341856-50341875 | Msa0604720:CDS | 25.0% |
| !!! | ATTGGTTTTCACATATAATG+GGG | + | chr4_2:50341924-50341943 | Msa0604720:CDS | 25.0% |
| !!! | AATTTTTGGTAAGAATGGAT+TGG | + | chr4_2:50341966-50341985 | Msa0604720:CDS | 25.0% |
| ! | CAGTTAACTAAAATAACAAC+TGG | - | chr4_2:50342471-50342490 | None:intergenic | 25.0% |
| ! | AGTACGAATAAATTATTACC+AGG | - | chr4_2:50341169-50341188 | None:intergenic | 25.0% |
| ! | GATGATGACAACTAATTTAT+AGG | + | chr4_2:50341282-50341301 | Msa0604720:intron | 25.0% |
| !!! | GGAAAAGTGAGTTTTTTTAA+AGG | + | chr4_2:50341303-50341322 | Msa0604720:intron | 25.0% |
| ! | TTATCTACTAGAGACAAATT+GGG | + | chr4_2:50341421-50341440 | Msa0604720:intron | 25.0% |
| ! | TTAGACTATTTGATATCGAT+TGG | + | chr4_2:50341590-50341609 | Msa0604720:intron | 25.0% |
| ! | GAAGAATGCATTAATTATTC+TGG | + | chr4_2:50341786-50341805 | Msa0604720:CDS | 25.0% |
| ! | AATGCATTAATTATTCTGGT+AGG | + | chr4_2:50341790-50341809 | Msa0604720:CDS | 25.0% |
| ! | AATGACATTTATCTGCAAAT+TGG | + | chr4_2:50341856-50341875 | Msa0604720:CDS | 25.0% |
| !!! | ATTGGTTTTCACATATAATG+GGG | + | chr4_2:50341924-50341943 | Msa0604720:CDS | 25.0% |
| !!! | AATTTTTGGTAAGAATGGAT+TGG | + | chr4_2:50341966-50341985 | Msa0604720:CDS | 25.0% |
| ! | CAGTTAACTAAAATAACAAC+TGG | - | chr4_2:50342471-50342490 | None:intergenic | 25.0% |
| ! | TTCTTTGATGATTGCGAAAA+AGG | - | chr4_2:50341129-50341148 | None:intergenic | 30.0% |
| ! | TTTTTCGCAATCATCAAAGA+AGG | + | chr4_2:50341128-50341147 | Msa0604720:CDS | 30.0% |
| ACGAATAAATTATTACCAGG+CGG | - | chr4_2:50341166-50341185 | None:intergenic | 30.0% | |
| TTTGTCTCTAGTAGATAACT+CGG | - | chr4_2:50341419-50341438 | None:intergenic | 30.0% | |
| GTTATCTACTAGAGACAAAT+TGG | + | chr4_2:50341420-50341439 | Msa0604720:intron | 30.0% | |
| AACAGAAAAATTACCAAGCT+TGG | - | chr4_2:50341571-50341590 | None:intergenic | 30.0% | |
| ! | ACTATTTGATATCGATTGGA+AGG | + | chr4_2:50341594-50341613 | Msa0604720:intron | 30.0% |
| !!! | GTCAAGCTACTATGTTTTTT+TGG | + | chr4_2:50341706-50341725 | Msa0604720:intron | 30.0% |
| AAATCCATAACAATCTCTTG+TGG | - | chr4_2:50341751-50341770 | None:intergenic | 30.0% | |
| ACAAGAGATTGTTATGGATT+TGG | + | chr4_2:50341750-50341769 | Msa0604720:CDS | 30.0% | |
| CAAGAGATTGTTATGGATTT+GGG | + | chr4_2:50341751-50341770 | Msa0604720:CDS | 30.0% | |
| !! | GAAGTGAGTATTTTGAAGAA+AGG | + | chr4_2:50341832-50341851 | Msa0604720:CDS | 30.0% |
| ACATTTATCTGCAAATTGGT+TGG | + | chr4_2:50341860-50341879 | Msa0604720:CDS | 30.0% | |
| !!! | GTGCAAATTTTTGGTAAGAA+TGG | + | chr4_2:50341961-50341980 | Msa0604720:CDS | 30.0% |
| TGAAGTTGCAGAAAAAATTG+TGG | + | chr4_2:50342140-50342159 | Msa0604720:CDS | 30.0% | |
| ATTGTGGTTAAGAGAAATGA+TGG | + | chr4_2:50342156-50342175 | Msa0604720:CDS | 30.0% | |
| !!! | TGACGAACATGATTTTTTCT+TGG | - | chr4_2:50342267-50342286 | None:intergenic | 30.0% |
| ! | TTCTTTGATGATTGCGAAAA+AGG | - | chr4_2:50341129-50341148 | None:intergenic | 30.0% |
| ! | TTTTTCGCAATCATCAAAGA+AGG | + | chr4_2:50341128-50341147 | Msa0604720:CDS | 30.0% |
| ACGAATAAATTATTACCAGG+CGG | - | chr4_2:50341166-50341185 | None:intergenic | 30.0% | |
| TTTGTCTCTAGTAGATAACT+CGG | - | chr4_2:50341419-50341438 | None:intergenic | 30.0% | |
| GTTATCTACTAGAGACAAAT+TGG | + | chr4_2:50341420-50341439 | Msa0604720:intron | 30.0% | |
| AACAGAAAAATTACCAAGCT+TGG | - | chr4_2:50341571-50341590 | None:intergenic | 30.0% | |
| ! | ACTATTTGATATCGATTGGA+AGG | + | chr4_2:50341594-50341613 | Msa0604720:intron | 30.0% |
| !!! | GTCAAGCTACTATGTTTTTT+TGG | + | chr4_2:50341706-50341725 | Msa0604720:intron | 30.0% |
| AAATCCATAACAATCTCTTG+TGG | - | chr4_2:50341751-50341770 | None:intergenic | 30.0% | |
| ACAAGAGATTGTTATGGATT+TGG | + | chr4_2:50341750-50341769 | Msa0604720:CDS | 30.0% | |
| CAAGAGATTGTTATGGATTT+GGG | + | chr4_2:50341751-50341770 | Msa0604720:CDS | 30.0% | |
| !! | GAAGTGAGTATTTTGAAGAA+AGG | + | chr4_2:50341832-50341851 | Msa0604720:CDS | 30.0% |
| ACATTTATCTGCAAATTGGT+TGG | + | chr4_2:50341860-50341879 | Msa0604720:CDS | 30.0% | |
| !!! | GTGCAAATTTTTGGTAAGAA+TGG | + | chr4_2:50341961-50341980 | Msa0604720:CDS | 30.0% |
| TGAAGTTGCAGAAAAAATTG+TGG | + | chr4_2:50342140-50342159 | Msa0604720:CDS | 30.0% | |
| ATTGTGGTTAAGAGAAATGA+TGG | + | chr4_2:50342156-50342175 | Msa0604720:CDS | 30.0% | |
| !!! | TGACGAACATGATTTTTTCT+TGG | - | chr4_2:50342267-50342286 | None:intergenic | 30.0% |
| ! | TTGATGATTGCGAAAAAGGA+TGG | - | chr4_2:50341125-50341144 | None:intergenic | 35.0% |
| AAAATTACCAAGCTTGGATC+TGG | - | chr4_2:50341565-50341584 | None:intergenic | 35.0% | |
| ! | TGATATCGATTGGAAGGTTA+CGG | + | chr4_2:50341600-50341619 | Msa0604720:intron | 35.0% |
| ACATGTTATGCATATGAAGC+TGG | - | chr4_2:50341657-50341676 | None:intergenic | 35.0% | |
| AGTACCACAAGAGATTGTTA+TGG | + | chr4_2:50341744-50341763 | Msa0604720:CDS | 35.0% | |
| AGTGATGCTTGAAGAGTTAT+TGG | + | chr4_2:50341906-50341925 | Msa0604720:CDS | 35.0% | |
| ! | AAGTTCCAGGTGCAAATTTT+TGG | + | chr4_2:50341952-50341971 | Msa0604720:CDS | 35.0% |
| TCTTACCAAAAATTTGCACC+TGG | - | chr4_2:50341960-50341979 | None:intergenic | 35.0% | |
| TCTTGTACATTCTTGAAGCA+TGG | - | chr4_2:50341997-50342016 | None:intergenic | 35.0% | |
| ! | TCAGGAGAAAGAACTTTTCT+TGG | - | chr4_2:50342093-50342112 | None:intergenic | 35.0% |
| AAAATCTGCAGAAACAATCG+TGG | + | chr4_2:50342407-50342426 | Msa0604720:CDS | 35.0% | |
| ACTAAAATAACAACTGGAGC+AGG | - | chr4_2:50342465-50342484 | None:intergenic | 35.0% | |
| ! | TTGATGATTGCGAAAAAGGA+TGG | - | chr4_2:50341125-50341144 | None:intergenic | 35.0% |
| AAAATTACCAAGCTTGGATC+TGG | - | chr4_2:50341565-50341584 | None:intergenic | 35.0% | |
| ! | TGATATCGATTGGAAGGTTA+CGG | + | chr4_2:50341600-50341619 | Msa0604720:intron | 35.0% |
| ACATGTTATGCATATGAAGC+TGG | - | chr4_2:50341657-50341676 | None:intergenic | 35.0% | |
| AGTACCACAAGAGATTGTTA+TGG | + | chr4_2:50341744-50341763 | Msa0604720:CDS | 35.0% | |
| AGTGATGCTTGAAGAGTTAT+TGG | + | chr4_2:50341906-50341925 | Msa0604720:CDS | 35.0% | |
| ! | AAGTTCCAGGTGCAAATTTT+TGG | + | chr4_2:50341952-50341971 | Msa0604720:CDS | 35.0% |
| TCTTACCAAAAATTTGCACC+TGG | - | chr4_2:50341960-50341979 | None:intergenic | 35.0% | |
| TCTTGTACATTCTTGAAGCA+TGG | - | chr4_2:50341997-50342016 | None:intergenic | 35.0% | |
| ! | TCAGGAGAAAGAACTTTTCT+TGG | - | chr4_2:50342093-50342112 | None:intergenic | 35.0% |
| AAAATCTGCAGAAACAATCG+TGG | + | chr4_2:50342407-50342426 | Msa0604720:CDS | 35.0% | |
| ACTAAAATAACAACTGGAGC+AGG | - | chr4_2:50342465-50342484 | None:intergenic | 35.0% | |
| ! | CGAAAAAGGATGGTTTGTCT+TGG | - | chr4_2:50341115-50341134 | None:intergenic | 40.0% |
| GCATGAGATGATGTTCATGT+GGG | - | chr4_2:50341209-50341228 | None:intergenic | 40.0% | |
| TGCATGAGATGATGTTCATG+TGG | - | chr4_2:50341210-50341229 | None:intergenic | 40.0% | |
| ! | ATAACTCGGCTTTTGAGCTA+AGG | - | chr4_2:50341405-50341424 | None:intergenic | 40.0% |
| ATGCACGCATTCATGAAGTT+TGG | + | chr4_2:50341508-50341527 | Msa0604720:intron | 40.0% | |
| ATTATTCTGGTAGGCTCTTC+TGG | + | chr4_2:50341799-50341818 | Msa0604720:CDS | 40.0% | |
| ! | TTCTTAAAGCACTCACTCTC+AGG | - | chr4_2:50342111-50342130 | None:intergenic | 40.0% |
| AGAACAAGAAAAAGTCCTGC+TGG | + | chr4_2:50342180-50342199 | Msa0604720:CDS | 40.0% | |
| TGCAGCAACAATCATGTCTA+TGG | + | chr4_2:50342236-50342255 | Msa0604720:CDS | 40.0% | |
| GCAGCAACAATCATGTCTAT+GGG | + | chr4_2:50342237-50342256 | Msa0604720:CDS | 40.0% | |
| ! | ATTGATGGCTGCGATAAACA+AGG | + | chr4_2:50342329-50342348 | Msa0604720:CDS | 40.0% |
| ! | TTGATGGCTGCGATAAACAA+GGG | + | chr4_2:50342330-50342349 | Msa0604720:CDS | 40.0% |
| AGAACAAGAGAAAATCCTGC+TGG | + | chr4_2:50342354-50342373 | Msa0604720:CDS | 40.0% | |
| ! | ACTGGAGCAGGATATTTTCT+TGG | - | chr4_2:50342453-50342472 | None:intergenic | 40.0% |
| ! | CGAAAAAGGATGGTTTGTCT+TGG | - | chr4_2:50341115-50341134 | None:intergenic | 40.0% |
| GCATGAGATGATGTTCATGT+GGG | - | chr4_2:50341209-50341228 | None:intergenic | 40.0% | |
| TGCATGAGATGATGTTCATG+TGG | - | chr4_2:50341210-50341229 | None:intergenic | 40.0% | |
| ! | ATAACTCGGCTTTTGAGCTA+AGG | - | chr4_2:50341405-50341424 | None:intergenic | 40.0% |
| ATGCACGCATTCATGAAGTT+TGG | + | chr4_2:50341508-50341527 | Msa0604720:intron | 40.0% | |
| ATTATTCTGGTAGGCTCTTC+TGG | + | chr4_2:50341799-50341818 | Msa0604720:CDS | 40.0% | |
| ! | TTCTTAAAGCACTCACTCTC+AGG | - | chr4_2:50342111-50342130 | None:intergenic | 40.0% |
| AGAACAAGAAAAAGTCCTGC+TGG | + | chr4_2:50342180-50342199 | Msa0604720:CDS | 40.0% | |
| TGCAGCAACAATCATGTCTA+TGG | + | chr4_2:50342236-50342255 | Msa0604720:CDS | 40.0% | |
| GCAGCAACAATCATGTCTAT+GGG | + | chr4_2:50342237-50342256 | Msa0604720:CDS | 40.0% | |
| ! | ATTGATGGCTGCGATAAACA+AGG | + | chr4_2:50342329-50342348 | Msa0604720:CDS | 40.0% |
| ! | TTGATGGCTGCGATAAACAA+GGG | + | chr4_2:50342330-50342349 | Msa0604720:CDS | 40.0% |
| AGAACAAGAGAAAATCCTGC+TGG | + | chr4_2:50342354-50342373 | Msa0604720:CDS | 40.0% | |
| ! | ACTGGAGCAGGATATTTTCT+TGG | - | chr4_2:50342453-50342472 | None:intergenic | 40.0% |
| ATAGGACCCTGTATTCCCTT+TGG | + | chr4_2:50341478-50341497 | Msa0604720:intron | 45.0% | |
| CAGTGACCAAAGGGAATACA+GGG | - | chr4_2:50341487-50341506 | None:intergenic | 45.0% | |
| TCAGTGACCAAAGGGAATAC+AGG | - | chr4_2:50341488-50341507 | None:intergenic | 45.0% | |
| ATCCATGACCGTCCGAAAAA+TGG | + | chr4_2:50341533-50341552 | Msa0604720:intron | 45.0% | |
| TCCATGACCGTCCGAAAAAT+GGG | + | chr4_2:50341534-50341553 | Msa0604720:intron | 45.0% | |
| !! | ATCTGGACCACCCCATTTTT+CGG | - | chr4_2:50341548-50341567 | None:intergenic | 45.0% |
| TGCAAGCATTCACAAAGCCA+GGG | - | chr4_2:50341629-50341648 | None:intergenic | 45.0% | |
| !! | TGGCTTTGTGAATGCTTGCA+GGG | + | chr4_2:50341629-50341648 | Msa0604720:intron | 45.0% |
| TGGATTTGGGTGAAGAGTTG+TGG | + | chr4_2:50341764-50341783 | Msa0604720:CDS | 45.0% | |
| TAGGCTCTTCTGGTGAGAAA+TGG | + | chr4_2:50341809-50341828 | Msa0604720:CDS | 45.0% | |
| AGGCTCTTCTGGTGAGAAAT+GGG | + | chr4_2:50341810-50341829 | Msa0604720:CDS | 45.0% | |
| TAATGGGGAGAACAAGTTCC+AGG | + | chr4_2:50341939-50341958 | Msa0604720:CDS | 45.0% | |
| TTTCTCTTGGCCGCGATTAT+TGG | - | chr4_2:50342060-50342079 | None:intergenic | 45.0% | |
| CATCAATGTTGCTGCAGCTT+TGG | - | chr4_2:50342316-50342335 | None:intergenic | 45.0% | |
| CAAAGCTGCAGCAACATTGA+TGG | + | chr4_2:50342314-50342333 | Msa0604720:CDS | 45.0% | |
| AGAAAATCCTGCTGGTGAGA+GGG | + | chr4_2:50342362-50342381 | Msa0604720:CDS | 45.0% | |
| AATCGTGGCTGAGAGAAAGA+AGG | + | chr4_2:50342422-50342441 | Msa0604720:CDS | 45.0% | |
| ATCGTGGCTGAGAGAAAGAA+GGG | + | chr4_2:50342423-50342442 | Msa0604720:CDS | 45.0% | |
| ATAGGACCCTGTATTCCCTT+TGG | + | chr4_2:50341478-50341497 | Msa0604720:intron | 45.0% | |
| CAGTGACCAAAGGGAATACA+GGG | - | chr4_2:50341487-50341506 | None:intergenic | 45.0% | |
| TCAGTGACCAAAGGGAATAC+AGG | - | chr4_2:50341488-50341507 | None:intergenic | 45.0% | |
| ATCCATGACCGTCCGAAAAA+TGG | + | chr4_2:50341533-50341552 | Msa0604720:intron | 45.0% | |
| TCCATGACCGTCCGAAAAAT+GGG | + | chr4_2:50341534-50341553 | Msa0604720:intron | 45.0% | |
| !! | ATCTGGACCACCCCATTTTT+CGG | - | chr4_2:50341548-50341567 | None:intergenic | 45.0% |
| TGCAAGCATTCACAAAGCCA+GGG | - | chr4_2:50341629-50341648 | None:intergenic | 45.0% | |
| !! | TGGCTTTGTGAATGCTTGCA+GGG | + | chr4_2:50341629-50341648 | Msa0604720:intron | 45.0% |
| TGGATTTGGGTGAAGAGTTG+TGG | + | chr4_2:50341764-50341783 | Msa0604720:CDS | 45.0% | |
| TAGGCTCTTCTGGTGAGAAA+TGG | + | chr4_2:50341809-50341828 | Msa0604720:CDS | 45.0% | |
| AGGCTCTTCTGGTGAGAAAT+GGG | + | chr4_2:50341810-50341829 | Msa0604720:CDS | 45.0% | |
| TAATGGGGAGAACAAGTTCC+AGG | + | chr4_2:50341939-50341958 | Msa0604720:CDS | 45.0% | |
| TTTCTCTTGGCCGCGATTAT+TGG | - | chr4_2:50342060-50342079 | None:intergenic | 45.0% | |
| CATCAATGTTGCTGCAGCTT+TGG | - | chr4_2:50342316-50342335 | None:intergenic | 45.0% | |
| CAAAGCTGCAGCAACATTGA+TGG | + | chr4_2:50342314-50342333 | Msa0604720:CDS | 45.0% | |
| AGAAAATCCTGCTGGTGAGA+GGG | + | chr4_2:50342362-50342381 | Msa0604720:CDS | 45.0% | |
| AATCGTGGCTGAGAGAAAGA+AGG | + | chr4_2:50342422-50342441 | Msa0604720:CDS | 45.0% | |
| ATCGTGGCTGAGAGAAAGAA+GGG | + | chr4_2:50342423-50342442 | Msa0604720:CDS | 45.0% | |
| GCGTGCATTCAGTGACCAAA+GGG | - | chr4_2:50341496-50341515 | None:intergenic | 50.0% | |
| TGCGTGCATTCAGTGACCAA+AGG | - | chr4_2:50341497-50341516 | None:intergenic | 50.0% | |
| CCATGACCGTCCGAAAAATG+GGG | + | chr4_2:50341535-50341554 | Msa0604720:intron | 50.0% | |
| GCAAGCATTCACAAAGCCAG+GGG | - | chr4_2:50341628-50341647 | None:intergenic | 50.0% | |
| CTGCAAGCATTCACAAAGCC+AGG | - | chr4_2:50341630-50341649 | None:intergenic | 50.0% | |
| !! | CTGGCTTTGTGAATGCTTGC+AGG | + | chr4_2:50341628-50341647 | Msa0604720:intron | 50.0% |
| TGCAGCAGCTCCAATAATCG+CGG | + | chr4_2:50342047-50342066 | Msa0604720:CDS | 50.0% | |
| TAATCGCGGCCAAGAGAAAG+AGG | + | chr4_2:50342061-50342080 | Msa0604720:CDS | 50.0% | |
| AATCGCGGCCAAGAGAAAGA+GGG | + | chr4_2:50342062-50342081 | Msa0604720:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_2:50342073-50342092 | None:intergenic | 50.0% | |
| AAGCATACTCTCTCACCAGC+AGG | - | chr4_2:50342198-50342217 | None:intergenic | 50.0% | |
| ! | CTGGTGAGAGAGTATGCTTC+AGG | + | chr4_2:50342199-50342218 | Msa0604720:CDS | 50.0% |
| GAGAAAATCCTGCTGGTGAG+AGG | + | chr4_2:50342361-50342380 | Msa0604720:CDS | 50.0% | |
| GCGTGCATTCAGTGACCAAA+GGG | - | chr4_2:50341496-50341515 | None:intergenic | 50.0% | |
| TGCGTGCATTCAGTGACCAA+AGG | - | chr4_2:50341497-50341516 | None:intergenic | 50.0% | |
| CCATGACCGTCCGAAAAATG+GGG | + | chr4_2:50341535-50341554 | Msa0604720:intron | 50.0% | |
| GCAAGCATTCACAAAGCCAG+GGG | - | chr4_2:50341628-50341647 | None:intergenic | 50.0% | |
| CTGCAAGCATTCACAAAGCC+AGG | - | chr4_2:50341630-50341649 | None:intergenic | 50.0% | |
| !! | CTGGCTTTGTGAATGCTTGC+AGG | + | chr4_2:50341628-50341647 | Msa0604720:intron | 50.0% |
| TGCAGCAGCTCCAATAATCG+CGG | + | chr4_2:50342047-50342066 | Msa0604720:CDS | 50.0% | |
| TAATCGCGGCCAAGAGAAAG+AGG | + | chr4_2:50342061-50342080 | Msa0604720:CDS | 50.0% | |
| AATCGCGGCCAAGAGAAAGA+GGG | + | chr4_2:50342062-50342081 | Msa0604720:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_2:50342073-50342092 | None:intergenic | 50.0% | |
| AAGCATACTCTCTCACCAGC+AGG | - | chr4_2:50342198-50342217 | None:intergenic | 50.0% | |
| ! | CTGGTGAGAGAGTATGCTTC+AGG | + | chr4_2:50342199-50342218 | Msa0604720:CDS | 50.0% |
| GAGAAAATCCTGCTGGTGAG+AGG | + | chr4_2:50342361-50342380 | Msa0604720:CDS | 50.0% | |
| AGGCTTGAACATCAACCGCC+TGG | + | chr4_2:50341148-50341167 | Msa0604720:CDS | 55.0% | |
| !! | CCCCATTTTTCGGACGGTCA+TGG | - | chr4_2:50341538-50341557 | None:intergenic | 55.0% |
| TGACCGTCCGAAAAATGGGG+TGG | + | chr4_2:50341538-50341557 | Msa0604720:intron | 55.0% | |
| !! | GGACCACCCCATTTTTCGGA+CGG | - | chr4_2:50341544-50341563 | None:intergenic | 55.0% |
| TTGGAAGGTTACGGATCCCC+TGG | + | chr4_2:50341609-50341628 | Msa0604720:intron | 55.0% | |
| ATCGCGGCCAAGAGAAAGAG+GGG | + | chr4_2:50342063-50342082 | Msa0604720:CDS | 55.0% | |
| ATGCATACCCTCTCACCAGC+AGG | - | chr4_2:50342372-50342391 | None:intergenic | 55.0% | |
| AGGCTTGAACATCAACCGCC+TGG | + | chr4_2:50341148-50341167 | Msa0604720:CDS | 55.0% | |
| !! | CCCCATTTTTCGGACGGTCA+TGG | - | chr4_2:50341538-50341557 | None:intergenic | 55.0% |
| TGACCGTCCGAAAAATGGGG+TGG | + | chr4_2:50341538-50341557 | Msa0604720:intron | 55.0% | |
| !! | GGACCACCCCATTTTTCGGA+CGG | - | chr4_2:50341544-50341563 | None:intergenic | 55.0% |
| TTGGAAGGTTACGGATCCCC+TGG | + | chr4_2:50341609-50341628 | Msa0604720:intron | 55.0% | |
| ATCGCGGCCAAGAGAAAGAG+GGG | + | chr4_2:50342063-50342082 | Msa0604720:CDS | 55.0% | |
| ATGCATACCCTCTCACCAGC+AGG | - | chr4_2:50342372-50342391 | None:intergenic | 55.0% | |
| GGGTGGTCCAGATCCAAGCT+TGG | + | chr4_2:50341555-50341574 | Msa0604720:intron | 60.0% | |
| GGGTGGTCCAGATCCAAGCT+TGG | + | chr4_2:50341555-50341574 | Msa0604720:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 50341098 | 50342491 | 50341098 | ID=Msa0604720;Name=Msa0604720 |
| chr4_2 | mRNA | 50341098 | 50342491 | 50341098 | ID=Msa0604720-mRNA-1;Parent=Msa0604720;Name=Msa0604720-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|2|0|273 |
| chr4_2 | exon | 50341098 | 50341169 | 50341098 | ID=Msa0604720-mRNA-1:exon:11869;Parent=Msa0604720-mRNA-1 |
| chr4_2 | exon | 50341742 | 50342491 | 50341742 | ID=Msa0604720-mRNA-1:exon:11870;Parent=Msa0604720-mRNA-1 |
| chr4_2 | CDS | 50341098 | 50341169 | 50341098 | ID=Msa0604720-mRNA-1:cds;Parent=Msa0604720-mRNA-1 |
| chr4_2 | CDS | 50341742 | 50342491 | 50341742 | ID=Msa0604720-mRNA-1:cds;Parent=Msa0604720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
