Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606590 | XP_003607180.1 | 97.683 | 259 | 6 | 0 | 1 | 259 | 1 | 259 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606590 | sp|Q8VY76|BZP19_ARATH | 64.394 | 264 | 78 | 8 | 1 | 259 | 1 | 253 | 6.62e-108 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606590 | B7FIL7 | 97.683 | 259 | 6 | 0 | 1 | 259 | 1 | 259 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0606590 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606590 | MtrunA17_Chr4g0036971 | 97.683 | 259 | 6 | 0 | 1 | 259 | 1 | 259 | 0.0 | 530 |
| Msa0606590 | MtrunA17_Chr3g0090531 | 41.089 | 202 | 95 | 4 | 1 | 197 | 1 | 183 | 1.11e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606590 | AT4G35040.1 | 64.394 | 264 | 78 | 8 | 1 | 259 | 1 | 253 | 6.73e-109 | 315 |
| Msa0606590 | AT4G35040.4 | 64.394 | 264 | 78 | 8 | 1 | 259 | 1 | 253 | 6.73e-109 | 315 |
| Msa0606590 | AT4G35040.2 | 64.394 | 264 | 78 | 8 | 1 | 259 | 1 | 253 | 6.73e-109 | 315 |
| Msa0606590 | AT4G35040.3 | 64.394 | 264 | 78 | 8 | 1 | 259 | 1 | 253 | 6.73e-109 | 315 |
| Msa0606590 | AT2G16770.2 | 61.686 | 261 | 80 | 6 | 1 | 260 | 1 | 242 | 8.23e-109 | 315 |
| Msa0606590 | AT2G16770.1 | 61.686 | 261 | 80 | 6 | 1 | 260 | 1 | 242 | 8.23e-109 | 315 |
| Msa0606590 | AT3G51960.3 | 54.478 | 134 | 54 | 3 | 39 | 171 | 13 | 140 | 2.07e-45 | 151 |
| Msa0606590 | AT3G51960.2 | 54.478 | 134 | 54 | 3 | 39 | 171 | 52 | 179 | 4.60e-45 | 151 |
| Msa0606590 | AT3G51960.1 | 52.239 | 134 | 56 | 2 | 39 | 171 | 52 | 178 | 1.28e-43 | 147 |
Find 76 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAGGATTGAAGGGGAAAT+TGG | 0.203175 | 4_2:-53195304 | Msa0606590:CDS |
| CCCAACCGGTCGCTTCTTAC+TGG | 0.266035 | 4_2:+53195501 | None:intergenic |
| GATCCTTGAGCCCCAAATTC+TGG | 0.270466 | 4_2:+53195080 | None:intergenic |
| GTGTATGGGAGGCCAGAATT+TGG | 0.299733 | 4_2:-53195092 | Msa0606590:CDS |
| TGTATGGGAGGCCAGAATTT+GGG | 0.316343 | 4_2:-53195091 | Msa0606590:CDS |
| AGTGTTTGTTGGTTGATATA+AGG | 0.329657 | 4_2:-53195327 | Msa0606590:CDS |
| GTTGCAAGGGCAGGCTGCTT+TGG | 0.335855 | 4_2:-53195371 | Msa0606590:CDS |
| GTTTGAAATTCACCCATGTT+TGG | 0.360095 | 4_2:+53195718 | None:intergenic |
| GTGTTTGTTGGTTGATATAA+GGG | 0.361837 | 4_2:-53195326 | Msa0606590:CDS |
| GGAGGATTGAAGGGGAAATT+GGG | 0.370796 | 4_2:-53195303 | Msa0606590:CDS |
| CTCAAGGATCTTCGTGGTTG+TGG | 0.376487 | 4_2:-53195067 | Msa0606590:CDS |
| ATTTCAAACAAGTGGTTCAA+TGG | 0.405614 | 4_2:-53195704 | Msa0606590:CDS |
| GTTTGAGAGTCTCCAGTGTA+TGG | 0.417641 | 4_2:-53195107 | Msa0606590:CDS |
| CTTCTCACGATACTTCTTAA+CGG | 0.418607 | 4_2:+53195468 | None:intergenic |
| TGCGAGGTTGAAGTGTTTGT+TGG | 0.420725 | 4_2:-53195338 | Msa0606590:CDS |
| ACATTCGCCGGTTTCTGATA+CGG | 0.425585 | 4_2:+53195274 | None:intergenic |
| GCAAGGGCAGGCTGCTTTGG+AGG | 0.426440 | 4_2:-53195368 | Msa0606590:CDS |
| GGCTGCGTCGTTGGAGGATG+AGG | 0.428168 | 4_2:-53195434 | Msa0606590:CDS |
| TCATCACACTGCACATTACA+AGG | 0.429810 | 4_2:+53195211 | None:intergenic |
| CTGAATGAGGATGGATTTGA+TGG | 0.438510 | 4_2:-53195136 | Msa0606590:CDS |
| GATCTTCGTGGTTGTGGAGG+TGG | 0.440100 | 4_2:-53195061 | Msa0606590:CDS |
| TCAGCAGCAGTCTTCCCATC+TGG | 0.454924 | 4_2:+53195169 | None:intergenic |
| GTCATTTCCGTATCAGAAAC+CGG | 0.461463 | 4_2:-53195281 | Msa0606590:CDS |
| GAAAGCTAGGGCTGCGTCGT+TGG | 0.478279 | 4_2:-53195443 | Msa0606590:CDS |
| ACGGCCTCTTTATTCCCAAC+CGG | 0.481755 | 4_2:+53195487 | None:intergenic |
| CTTGGTGTGAACATGATAAC+AGG | 0.489270 | 4_2:+53195588 | None:intergenic |
| AGCTAGGGCTGCGTCGTTGG+AGG | 0.489293 | 4_2:-53195440 | Msa0606590:CDS |
| CTGCTGAAGATGATCAGGTT+GGG | 0.489651 | 4_2:-53195558 | Msa0606590:CDS |
| AGGCCAGAATTTGGGGCTCA+AGG | 0.491612 | 4_2:-53195083 | Msa0606590:CDS |
| ATCTTCAGCAGGGACAATCT+TGG | 0.499105 | 4_2:+53195570 | None:intergenic |
| TTGGGGCTCAAGGATCTTCG+TGG | 0.500226 | 4_2:-53195073 | Msa0606590:CDS |
| GCATATTGCCTTCGTCCAGA+TGG | 0.514127 | 4_2:-53195184 | Msa0606590:CDS |
| TGTCCCTGCTGAAGATGATC+AGG | 0.516014 | 4_2:-53195563 | Msa0606590:CDS |
| CAAGCTTCAAGTAAAAGAAA+AGG | 0.516189 | 4_2:-53195013 | Msa0606590:CDS |
| CCAGTAAGAAGCGACCGGTT+GGG | 0.517346 | 4_2:-53195501 | Msa0606590:CDS |
| ATCGTGAGAAGAAGAAAGCT+AGG | 0.518063 | 4_2:-53195456 | Msa0606590:CDS |
| TAATGTGCAGTGTGATGATC+GGG | 0.521659 | 4_2:-53195206 | Msa0606590:CDS |
| CTTTGGAGGCCGAAGTTGCG+AGG | 0.525689 | 4_2:-53195354 | Msa0606590:CDS |
| CCAACCTGATCATCTTCAGC+AGG | 0.525807 | 4_2:+53195559 | None:intergenic |
| GATGAGGAAGTTGCAAGGGC+AGG | 0.525833 | 4_2:-53195380 | Msa0606590:CDS |
| TCCAGTAAGAAGCGACCGGT+TGG | 0.526553 | 4_2:-53195502 | Msa0606590:CDS |
| AGGATGAGGTCATGAAATTG+AGG | 0.534541 | 4_2:-53195420 | Msa0606590:CDS |
| ATGGGTGAATTTCAAACAAG+TGG | 0.547703 | 4_2:-53195712 | Msa0606590:CDS |
| CATATTGCCTTCGTCCAGAT+GGG | 0.548979 | 4_2:-53195183 | Msa0606590:CDS |
| AATTCTGGCCTCCCATACAC+TGG | 0.551814 | 4_2:+53195095 | None:intergenic |
| AATCCCGCGATGAATTTGCC+TGG | 0.554148 | 4_2:-53195250 | Msa0606590:CDS |
| TGGGAAGACTGCTGCTGAAG+TGG | 0.554419 | 4_2:-53195164 | Msa0606590:CDS |
| GACCAGGTGGGTTACACGTG+TGG | 0.559695 | 4_2:+53195632 | None:intergenic |
| ATCGCGGGATTCACATTCGC+CGG | 0.559991 | 4_2:+53195262 | None:intergenic |
| TGAAGTGGCGTCGCTGAATG+AGG | 0.561752 | 4_2:-53195149 | Msa0606590:CDS |
| ACACTTCAACCTCGCAACTT+CGG | 0.570082 | 4_2:+53195345 | None:intergenic |
| CTTTGAATCAACATTTGATG+AGG | 0.576256 | 4_2:-53195396 | Msa0606590:CDS |
| GGGTTCATCACATGAGAACC+AGG | 0.577391 | 4_2:+53195232 | None:intergenic |
| GTTTGTTGGTTGATATAAGG+GGG | 0.577819 | 4_2:-53195324 | Msa0606590:CDS |
| TGTTTGTTGGTTGATATAAG+GGG | 0.578417 | 4_2:-53195325 | Msa0606590:CDS |
| GGATGAGGTCATGAAATTGA+GGG | 0.578672 | 4_2:-53195419 | Msa0606590:CDS |
| GTAATGTGCAGTGTGATGAT+CGG | 0.581966 | 4_2:-53195207 | Msa0606590:CDS |
| GAAGTCCAGTAAGAAGCGAC+CGG | 0.585566 | 4_2:-53195506 | Msa0606590:CDS |
| TTTGAGAGTCTCCAGTGTAT+GGG | 0.588557 | 4_2:-53195106 | Msa0606590:CDS |
| ATTTGATGAGGAAGTTGCAA+GGG | 0.594316 | 4_2:-53195384 | Msa0606590:CDS |
| GTATGGGAGGCCAGAATTTG+GGG | 0.595109 | 4_2:-53195090 | Msa0606590:CDS |
| AAGGATCTTCGTGGTTGTGG+AGG | 0.602836 | 4_2:-53195064 | Msa0606590:CDS |
| CATTTGATGAGGAAGTTGCA+AGG | 0.604562 | 4_2:-53195385 | Msa0606590:CDS |
| ACCCACACGTGTAACCCACC+TGG | 0.607124 | 4_2:-53195634 | Msa0606590:CDS |
| GTGGCGTCGCTGAATGAGGA+TGG | 0.607592 | 4_2:-53195145 | Msa0606590:CDS |
| ACCAGGTGGGTTACACGTGT+GGG | 0.610384 | 4_2:+53195633 | None:intergenic |
| GAACCAGGCAAATTCATCGC+GGG | 0.610422 | 4_2:+53195247 | None:intergenic |
| TCGTGAGAAGAAGAAAGCTA+GGG | 0.612179 | 4_2:-53195455 | Msa0606590:CDS |
| CCTGCTGAAGATGATCAGGT+TGG | 0.627520 | 4_2:-53195559 | Msa0606590:CDS |
| GAGAGTCTCCAGTGTATGGG+AGG | 0.629740 | 4_2:-53195103 | Msa0606590:CDS |
| CAGTCTTCCCATCTGGACGA+AGG | 0.640946 | 4_2:+53195176 | None:intergenic |
| GCGACCGGTTGGGAATAAAG+AGG | 0.649541 | 4_2:-53195491 | Msa0606590:CDS |
| GAATTAACATTAGACAACAT+CGG | 0.669492 | 4_2:+53195037 | None:intergenic |
| CAACCTGATCATCTTCAGCA+GGG | 0.684116 | 4_2:+53195560 | None:intergenic |
| CATCACACTGCACATTACAA+GGG | 0.696358 | 4_2:+53195212 | None:intergenic |
| AGAACCAGGCAAATTCATCG+CGG | 0.732891 | 4_2:+53195246 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGATGAATTGTTGA+AGG | - | chr4_2:53195092-53195111 | Msa0606590:CDS | 20.0% |
| !!! | TTTTTTTGATGAATTGTTGA+AGG | - | chr4_2:53195092-53195111 | Msa0606590:CDS | 20.0% |
| ! | GAATTAACATTAGACAACAT+CGG | + | chr4_2:53195735-53195754 | None:intergenic | 25.0% |
| ! | GAATTAACATTAGACAACAT+CGG | + | chr4_2:53195735-53195754 | None:intergenic | 25.0% |
| ATTTCAAACAAGTGGTTCAA+TGG | - | chr4_2:53195065-53195084 | Msa0606590:CDS | 30.0% | |
| CTTTGAATCAACATTTGATG+AGG | - | chr4_2:53195373-53195392 | Msa0606590:CDS | 30.0% | |
| ! | AGTGTTTGTTGGTTGATATA+AGG | - | chr4_2:53195442-53195461 | Msa0606590:CDS | 30.0% |
| ! | GTGTTTGTTGGTTGATATAA+GGG | - | chr4_2:53195443-53195462 | Msa0606590:CDS | 30.0% |
| ! | TGTTTGTTGGTTGATATAAG+GGG | - | chr4_2:53195444-53195463 | Msa0606590:CDS | 30.0% |
| CAAGCTTCAAGTAAAAGAAA+AGG | - | chr4_2:53195756-53195775 | Msa0606590:CDS | 30.0% | |
| ATTTCAAACAAGTGGTTCAA+TGG | - | chr4_2:53195065-53195084 | Msa0606590:CDS | 30.0% | |
| CTTTGAATCAACATTTGATG+AGG | - | chr4_2:53195373-53195392 | Msa0606590:CDS | 30.0% | |
| ! | AGTGTTTGTTGGTTGATATA+AGG | - | chr4_2:53195442-53195461 | Msa0606590:CDS | 30.0% |
| ! | GTGTTTGTTGGTTGATATAA+GGG | - | chr4_2:53195443-53195462 | Msa0606590:CDS | 30.0% |
| ! | TGTTTGTTGGTTGATATAAG+GGG | - | chr4_2:53195444-53195463 | Msa0606590:CDS | 30.0% |
| CAAGCTTCAAGTAAAAGAAA+AGG | - | chr4_2:53195756-53195775 | Msa0606590:CDS | 30.0% | |
| ! | GTTTGAAATTCACCCATGTT+TGG | + | chr4_2:53195054-53195073 | None:intergenic | 35.0% |
| ATGGGTGAATTTCAAACAAG+TGG | - | chr4_2:53195057-53195076 | Msa0606590:CDS | 35.0% | |
| CTTCTCACGATACTTCTTAA+CGG | + | chr4_2:53195304-53195323 | None:intergenic | 35.0% | |
| ATTTGATGAGGAAGTTGCAA+GGG | - | chr4_2:53195385-53195404 | Msa0606590:CDS | 35.0% | |
| ! | GTTTGTTGGTTGATATAAGG+GGG | - | chr4_2:53195445-53195464 | Msa0606590:CDS | 35.0% |
| ! | GTTTGAAATTCACCCATGTT+TGG | + | chr4_2:53195054-53195073 | None:intergenic | 35.0% |
| ATGGGTGAATTTCAAACAAG+TGG | - | chr4_2:53195057-53195076 | Msa0606590:CDS | 35.0% | |
| CTTCTCACGATACTTCTTAA+CGG | + | chr4_2:53195304-53195323 | None:intergenic | 35.0% | |
| ATTTGATGAGGAAGTTGCAA+GGG | - | chr4_2:53195385-53195404 | Msa0606590:CDS | 35.0% | |
| ! | GTTTGTTGGTTGATATAAGG+GGG | - | chr4_2:53195445-53195464 | Msa0606590:CDS | 35.0% |
| !!! | GTGTTTTCGAGTCCAAACAT+GGG | - | chr4_2:53195039-53195058 | Msa0606590:CDS | 40.0% |
| GTGTGAGTGTGTGAAAAATC+AGG | + | chr4_2:53195162-53195181 | None:intergenic | 40.0% | |
| ! | CTTGGTGTGAACATGATAAC+AGG | + | chr4_2:53195184-53195203 | None:intergenic | 40.0% |
| ATCGTGAGAAGAAGAAAGCT+AGG | - | chr4_2:53195313-53195332 | Msa0606590:CDS | 40.0% | |
| TCGTGAGAAGAAGAAAGCTA+GGG | - | chr4_2:53195314-53195333 | Msa0606590:CDS | 40.0% | |
| AGGATGAGGTCATGAAATTG+AGG | - | chr4_2:53195349-53195368 | Msa0606590:CDS | 40.0% | |
| GGATGAGGTCATGAAATTGA+GGG | - | chr4_2:53195350-53195369 | Msa0606590:CDS | 40.0% | |
| CATTTGATGAGGAAGTTGCA+AGG | - | chr4_2:53195384-53195403 | Msa0606590:CDS | 40.0% | |
| ATATAAGGGGGAGGATTGAA+GGG | - | chr4_2:53195457-53195476 | Msa0606590:CDS | 40.0% | |
| GTCATTTCCGTATCAGAAAC+CGG | - | chr4_2:53195488-53195507 | Msa0606590:CDS | 40.0% | |
| CATCACACTGCACATTACAA+GGG | + | chr4_2:53195560-53195579 | None:intergenic | 40.0% | |
| TCATCACACTGCACATTACA+AGG | + | chr4_2:53195561-53195580 | None:intergenic | 40.0% | |
| GTAATGTGCAGTGTGATGAT+CGG | - | chr4_2:53195562-53195581 | Msa0606590:CDS | 40.0% | |
| TAATGTGCAGTGTGATGATC+GGG | - | chr4_2:53195563-53195582 | Msa0606590:CDS | 40.0% | |
| ! | CTGAATGAGGATGGATTTGA+TGG | - | chr4_2:53195633-53195652 | Msa0606590:CDS | 40.0% |
| TTTGAGAGTCTCCAGTGTAT+GGG | - | chr4_2:53195663-53195682 | Msa0606590:CDS | 40.0% | |
| !!! | GTGTTTTCGAGTCCAAACAT+GGG | - | chr4_2:53195039-53195058 | Msa0606590:CDS | 40.0% |
| GTGTGAGTGTGTGAAAAATC+AGG | + | chr4_2:53195162-53195181 | None:intergenic | 40.0% | |
| ! | CTTGGTGTGAACATGATAAC+AGG | + | chr4_2:53195184-53195203 | None:intergenic | 40.0% |
| ATCGTGAGAAGAAGAAAGCT+AGG | - | chr4_2:53195313-53195332 | Msa0606590:CDS | 40.0% | |
| TCGTGAGAAGAAGAAAGCTA+GGG | - | chr4_2:53195314-53195333 | Msa0606590:CDS | 40.0% | |
| AGGATGAGGTCATGAAATTG+AGG | - | chr4_2:53195349-53195368 | Msa0606590:CDS | 40.0% | |
| GGATGAGGTCATGAAATTGA+GGG | - | chr4_2:53195350-53195369 | Msa0606590:CDS | 40.0% | |
| CATTTGATGAGGAAGTTGCA+AGG | - | chr4_2:53195384-53195403 | Msa0606590:CDS | 40.0% | |
| ATATAAGGGGGAGGATTGAA+GGG | - | chr4_2:53195457-53195476 | Msa0606590:CDS | 40.0% | |
| GTCATTTCCGTATCAGAAAC+CGG | - | chr4_2:53195488-53195507 | Msa0606590:CDS | 40.0% | |
| CATCACACTGCACATTACAA+GGG | + | chr4_2:53195560-53195579 | None:intergenic | 40.0% | |
| TCATCACACTGCACATTACA+AGG | + | chr4_2:53195561-53195580 | None:intergenic | 40.0% | |
| GTAATGTGCAGTGTGATGAT+CGG | - | chr4_2:53195562-53195581 | Msa0606590:CDS | 40.0% | |
| TAATGTGCAGTGTGATGATC+GGG | - | chr4_2:53195563-53195582 | Msa0606590:CDS | 40.0% | |
| ! | CTGAATGAGGATGGATTTGA+TGG | - | chr4_2:53195633-53195652 | Msa0606590:CDS | 40.0% |
| TTTGAGAGTCTCCAGTGTAT+GGG | - | chr4_2:53195663-53195682 | Msa0606590:CDS | 40.0% | |
| !!! | CGTGTTTTCGAGTCCAAACA+TGG | - | chr4_2:53195038-53195057 | Msa0606590:CDS | 45.0% |
| GTGAAAAATCAGGACCAGGT+GGG | + | chr4_2:53195152-53195171 | None:intergenic | 45.0% | |
| TGTGAAAAATCAGGACCAGG+TGG | + | chr4_2:53195153-53195172 | None:intergenic | 45.0% | |
| GTGTGTGAAAAATCAGGACC+AGG | + | chr4_2:53195156-53195175 | None:intergenic | 45.0% | |
| ATCTTCAGCAGGGACAATCT+TGG | + | chr4_2:53195202-53195221 | None:intergenic | 45.0% | |
| CAACCTGATCATCTTCAGCA+GGG | + | chr4_2:53195212-53195231 | None:intergenic | 45.0% | |
| CTGCTGAAGATGATCAGGTT+GGG | - | chr4_2:53195211-53195230 | Msa0606590:CDS | 45.0% | |
| ACACTTCAACCTCGCAACTT+CGG | + | chr4_2:53195427-53195446 | None:intergenic | 45.0% | |
| ! | TGCGAGGTTGAAGTGTTTGT+TGG | - | chr4_2:53195431-53195450 | Msa0606590:CDS | 45.0% |
| ! | TGTTGGTTGATATAAGGGGG+AGG | - | chr4_2:53195448-53195467 | Msa0606590:CDS | 45.0% |
| GATATAAGGGGGAGGATTGA+AGG | - | chr4_2:53195456-53195475 | Msa0606590:CDS | 45.0% | |
| TATAAGGGGGAGGATTGAAG+GGG | - | chr4_2:53195458-53195477 | Msa0606590:CDS | 45.0% | |
| GGAGGATTGAAGGGGAAATT+GGG | - | chr4_2:53195466-53195485 | Msa0606590:CDS | 45.0% | |
| !! | ACATTCGCCGGTTTCTGATA+CGG | + | chr4_2:53195498-53195517 | None:intergenic | 45.0% |
| AGAACCAGGCAAATTCATCG+CGG | + | chr4_2:53195526-53195545 | None:intergenic | 45.0% | |
| CATATTGCCTTCGTCCAGAT+GGG | - | chr4_2:53195586-53195605 | Msa0606590:CDS | 45.0% | |
| GTTTGAGAGTCTCCAGTGTA+TGG | - | chr4_2:53195662-53195681 | Msa0606590:CDS | 45.0% | |
| TGTATGGGAGGCCAGAATTT+GGG | - | chr4_2:53195678-53195697 | Msa0606590:CDS | 45.0% | |
| !!! | CGTGTTTTCGAGTCCAAACA+TGG | - | chr4_2:53195038-53195057 | Msa0606590:CDS | 45.0% |
| GTGAAAAATCAGGACCAGGT+GGG | + | chr4_2:53195152-53195171 | None:intergenic | 45.0% | |
| TGTGAAAAATCAGGACCAGG+TGG | + | chr4_2:53195153-53195172 | None:intergenic | 45.0% | |
| GTGTGTGAAAAATCAGGACC+AGG | + | chr4_2:53195156-53195175 | None:intergenic | 45.0% | |
| ATCTTCAGCAGGGACAATCT+TGG | + | chr4_2:53195202-53195221 | None:intergenic | 45.0% | |
| CAACCTGATCATCTTCAGCA+GGG | + | chr4_2:53195212-53195231 | None:intergenic | 45.0% | |
| CTGCTGAAGATGATCAGGTT+GGG | - | chr4_2:53195211-53195230 | Msa0606590:CDS | 45.0% | |
| ACACTTCAACCTCGCAACTT+CGG | + | chr4_2:53195427-53195446 | None:intergenic | 45.0% | |
| ! | TGCGAGGTTGAAGTGTTTGT+TGG | - | chr4_2:53195431-53195450 | Msa0606590:CDS | 45.0% |
| ! | TGTTGGTTGATATAAGGGGG+AGG | - | chr4_2:53195448-53195467 | Msa0606590:CDS | 45.0% |
| GATATAAGGGGGAGGATTGA+AGG | - | chr4_2:53195456-53195475 | Msa0606590:CDS | 45.0% | |
| TATAAGGGGGAGGATTGAAG+GGG | - | chr4_2:53195458-53195477 | Msa0606590:CDS | 45.0% | |
| GGAGGATTGAAGGGGAAATT+GGG | - | chr4_2:53195466-53195485 | Msa0606590:CDS | 45.0% | |
| !! | ACATTCGCCGGTTTCTGATA+CGG | + | chr4_2:53195498-53195517 | None:intergenic | 45.0% |
| AGAACCAGGCAAATTCATCG+CGG | + | chr4_2:53195526-53195545 | None:intergenic | 45.0% | |
| CATATTGCCTTCGTCCAGAT+GGG | - | chr4_2:53195586-53195605 | Msa0606590:CDS | 45.0% | |
| GTTTGAGAGTCTCCAGTGTA+TGG | - | chr4_2:53195662-53195681 | Msa0606590:CDS | 45.0% | |
| TGTATGGGAGGCCAGAATTT+GGG | - | chr4_2:53195678-53195697 | Msa0606590:CDS | 45.0% | |
| TGTCCCTGCTGAAGATGATC+AGG | - | chr4_2:53195206-53195225 | Msa0606590:CDS | 50.0% | |
| CCAACCTGATCATCTTCAGC+AGG | + | chr4_2:53195213-53195232 | None:intergenic | 50.0% | |
| CCTGCTGAAGATGATCAGGT+TGG | - | chr4_2:53195210-53195229 | Msa0606590:CDS | 50.0% | |
| GAAGTCCAGTAAGAAGCGAC+CGG | - | chr4_2:53195263-53195282 | Msa0606590:CDS | 50.0% | |
| ACGGCCTCTTTATTCCCAAC+CGG | + | chr4_2:53195285-53195304 | None:intergenic | 50.0% | |
| GGGAGGATTGAAGGGGAAAT+TGG | - | chr4_2:53195465-53195484 | Msa0606590:CDS | 50.0% | |
| AATCCCGCGATGAATTTGCC+TGG | - | chr4_2:53195519-53195538 | Msa0606590:CDS | 50.0% | |
| GAACCAGGCAAATTCATCGC+GGG | + | chr4_2:53195525-53195544 | None:intergenic | 50.0% | |
| GGGTTCATCACATGAGAACC+AGG | + | chr4_2:53195540-53195559 | None:intergenic | 50.0% | |
| GCATATTGCCTTCGTCCAGA+TGG | - | chr4_2:53195585-53195604 | Msa0606590:CDS | 50.0% | |
| AATTCTGGCCTCCCATACAC+TGG | + | chr4_2:53195677-53195696 | None:intergenic | 50.0% | |
| GTGTATGGGAGGCCAGAATT+TGG | - | chr4_2:53195677-53195696 | Msa0606590:CDS | 50.0% | |
| GTATGGGAGGCCAGAATTTG+GGG | - | chr4_2:53195679-53195698 | Msa0606590:CDS | 50.0% | |
| GATCCTTGAGCCCCAAATTC+TGG | + | chr4_2:53195692-53195711 | None:intergenic | 50.0% | |
| CTCAAGGATCTTCGTGGTTG+TGG | - | chr4_2:53195702-53195721 | Msa0606590:CDS | 50.0% | |
| AAGGATCTTCGTGGTTGTGG+AGG | - | chr4_2:53195705-53195724 | Msa0606590:CDS | 50.0% | |
| TGTCCCTGCTGAAGATGATC+AGG | - | chr4_2:53195206-53195225 | Msa0606590:CDS | 50.0% | |
| CCAACCTGATCATCTTCAGC+AGG | + | chr4_2:53195213-53195232 | None:intergenic | 50.0% | |
| CCTGCTGAAGATGATCAGGT+TGG | - | chr4_2:53195210-53195229 | Msa0606590:CDS | 50.0% | |
| GAAGTCCAGTAAGAAGCGAC+CGG | - | chr4_2:53195263-53195282 | Msa0606590:CDS | 50.0% | |
| ACGGCCTCTTTATTCCCAAC+CGG | + | chr4_2:53195285-53195304 | None:intergenic | 50.0% | |
| GGGAGGATTGAAGGGGAAAT+TGG | - | chr4_2:53195465-53195484 | Msa0606590:CDS | 50.0% | |
| AATCCCGCGATGAATTTGCC+TGG | - | chr4_2:53195519-53195538 | Msa0606590:CDS | 50.0% | |
| GAACCAGGCAAATTCATCGC+GGG | + | chr4_2:53195525-53195544 | None:intergenic | 50.0% | |
| GGGTTCATCACATGAGAACC+AGG | + | chr4_2:53195540-53195559 | None:intergenic | 50.0% | |
| GCATATTGCCTTCGTCCAGA+TGG | - | chr4_2:53195585-53195604 | Msa0606590:CDS | 50.0% | |
| AATTCTGGCCTCCCATACAC+TGG | + | chr4_2:53195677-53195696 | None:intergenic | 50.0% | |
| GTGTATGGGAGGCCAGAATT+TGG | - | chr4_2:53195677-53195696 | Msa0606590:CDS | 50.0% | |
| GTATGGGAGGCCAGAATTTG+GGG | - | chr4_2:53195679-53195698 | Msa0606590:CDS | 50.0% | |
| GATCCTTGAGCCCCAAATTC+TGG | + | chr4_2:53195692-53195711 | None:intergenic | 50.0% | |
| CTCAAGGATCTTCGTGGTTG+TGG | - | chr4_2:53195702-53195721 | Msa0606590:CDS | 50.0% | |
| AAGGATCTTCGTGGTTGTGG+AGG | - | chr4_2:53195705-53195724 | Msa0606590:CDS | 50.0% | |
| !! | ACCAGGTGGGTTACACGTGT+GGG | + | chr4_2:53195139-53195158 | None:intergenic | 55.0% |
| TCCAGTAAGAAGCGACCGGT+TGG | - | chr4_2:53195267-53195286 | Msa0606590:CDS | 55.0% | |
| CCAGTAAGAAGCGACCGGTT+GGG | - | chr4_2:53195268-53195287 | Msa0606590:CDS | 55.0% | |
| GCGACCGGTTGGGAATAAAG+AGG | - | chr4_2:53195278-53195297 | Msa0606590:CDS | 55.0% | |
| GATGAGGAAGTTGCAAGGGC+AGG | - | chr4_2:53195389-53195408 | Msa0606590:CDS | 55.0% | |
| ATCGCGGGATTCACATTCGC+CGG | + | chr4_2:53195510-53195529 | None:intergenic | 55.0% | |
| CAGTCTTCCCATCTGGACGA+AGG | + | chr4_2:53195596-53195615 | None:intergenic | 55.0% | |
| TCAGCAGCAGTCTTCCCATC+TGG | + | chr4_2:53195603-53195622 | None:intergenic | 55.0% | |
| TGGGAAGACTGCTGCTGAAG+TGG | - | chr4_2:53195605-53195624 | Msa0606590:CDS | 55.0% | |
| TGAAGTGGCGTCGCTGAATG+AGG | - | chr4_2:53195620-53195639 | Msa0606590:CDS | 55.0% | |
| GAGAGTCTCCAGTGTATGGG+AGG | - | chr4_2:53195666-53195685 | Msa0606590:CDS | 55.0% | |
| ! | AGGCCAGAATTTGGGGCTCA+AGG | - | chr4_2:53195686-53195705 | Msa0606590:CDS | 55.0% |
| TTGGGGCTCAAGGATCTTCG+TGG | - | chr4_2:53195696-53195715 | Msa0606590:CDS | 55.0% | |
| GATCTTCGTGGTTGTGGAGG+TGG | - | chr4_2:53195708-53195727 | Msa0606590:CDS | 55.0% | |
| !! | ACCAGGTGGGTTACACGTGT+GGG | + | chr4_2:53195139-53195158 | None:intergenic | 55.0% |
| TCCAGTAAGAAGCGACCGGT+TGG | - | chr4_2:53195267-53195286 | Msa0606590:CDS | 55.0% | |
| CCAGTAAGAAGCGACCGGTT+GGG | - | chr4_2:53195268-53195287 | Msa0606590:CDS | 55.0% | |
| GCGACCGGTTGGGAATAAAG+AGG | - | chr4_2:53195278-53195297 | Msa0606590:CDS | 55.0% | |
| GATGAGGAAGTTGCAAGGGC+AGG | - | chr4_2:53195389-53195408 | Msa0606590:CDS | 55.0% | |
| ATCGCGGGATTCACATTCGC+CGG | + | chr4_2:53195510-53195529 | None:intergenic | 55.0% | |
| CAGTCTTCCCATCTGGACGA+AGG | + | chr4_2:53195596-53195615 | None:intergenic | 55.0% | |
| TCAGCAGCAGTCTTCCCATC+TGG | + | chr4_2:53195603-53195622 | None:intergenic | 55.0% | |
| TGGGAAGACTGCTGCTGAAG+TGG | - | chr4_2:53195605-53195624 | Msa0606590:CDS | 55.0% | |
| TGAAGTGGCGTCGCTGAATG+AGG | - | chr4_2:53195620-53195639 | Msa0606590:CDS | 55.0% | |
| GAGAGTCTCCAGTGTATGGG+AGG | - | chr4_2:53195666-53195685 | Msa0606590:CDS | 55.0% | |
| ! | AGGCCAGAATTTGGGGCTCA+AGG | - | chr4_2:53195686-53195705 | Msa0606590:CDS | 55.0% |
| TTGGGGCTCAAGGATCTTCG+TGG | - | chr4_2:53195696-53195715 | Msa0606590:CDS | 55.0% | |
| GATCTTCGTGGTTGTGGAGG+TGG | - | chr4_2:53195708-53195727 | Msa0606590:CDS | 55.0% | |
| ACCCACACGTGTAACCCACC+TGG | - | chr4_2:53195135-53195154 | Msa0606590:CDS | 60.0% | |
| !! | GACCAGGTGGGTTACACGTG+TGG | + | chr4_2:53195140-53195159 | None:intergenic | 60.0% |
| CCCAACCGGTCGCTTCTTAC+TGG | + | chr4_2:53195271-53195290 | None:intergenic | 60.0% | |
| GAAAGCTAGGGCTGCGTCGT+TGG | - | chr4_2:53195326-53195345 | Msa0606590:CDS | 60.0% | |
| GTTGCAAGGGCAGGCTGCTT+TGG | - | chr4_2:53195398-53195417 | Msa0606590:CDS | 60.0% | |
| ! | CTTTGGAGGCCGAAGTTGCG+AGG | - | chr4_2:53195415-53195434 | Msa0606590:CDS | 60.0% |
| GTGGCGTCGCTGAATGAGGA+TGG | - | chr4_2:53195624-53195643 | Msa0606590:CDS | 60.0% | |
| ACCCACACGTGTAACCCACC+TGG | - | chr4_2:53195135-53195154 | Msa0606590:CDS | 60.0% | |
| !! | GACCAGGTGGGTTACACGTG+TGG | + | chr4_2:53195140-53195159 | None:intergenic | 60.0% |
| CCCAACCGGTCGCTTCTTAC+TGG | + | chr4_2:53195271-53195290 | None:intergenic | 60.0% | |
| GAAAGCTAGGGCTGCGTCGT+TGG | - | chr4_2:53195326-53195345 | Msa0606590:CDS | 60.0% | |
| GTTGCAAGGGCAGGCTGCTT+TGG | - | chr4_2:53195398-53195417 | Msa0606590:CDS | 60.0% | |
| ! | CTTTGGAGGCCGAAGTTGCG+AGG | - | chr4_2:53195415-53195434 | Msa0606590:CDS | 60.0% |
| GTGGCGTCGCTGAATGAGGA+TGG | - | chr4_2:53195624-53195643 | Msa0606590:CDS | 60.0% | |
| AGCTAGGGCTGCGTCGTTGG+AGG | - | chr4_2:53195329-53195348 | Msa0606590:CDS | 65.0% | |
| GGCTGCGTCGTTGGAGGATG+AGG | - | chr4_2:53195335-53195354 | Msa0606590:CDS | 65.0% | |
| ! | GCAAGGGCAGGCTGCTTTGG+AGG | - | chr4_2:53195401-53195420 | Msa0606590:CDS | 65.0% |
| AGCTAGGGCTGCGTCGTTGG+AGG | - | chr4_2:53195329-53195348 | Msa0606590:CDS | 65.0% | |
| GGCTGCGTCGTTGGAGGATG+AGG | - | chr4_2:53195335-53195354 | Msa0606590:CDS | 65.0% | |
| ! | GCAAGGGCAGGCTGCTTTGG+AGG | - | chr4_2:53195401-53195420 | Msa0606590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 53195003 | 53195788 | 53195003 | ID=Msa0606590;Name=Msa0606590 |
| chr4_2 | mRNA | 53195003 | 53195788 | 53195003 | ID=Msa0606590-mRNA-1;Parent=Msa0606590;Name=Msa0606590-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|261 |
| chr4_2 | exon | 53195003 | 53195788 | 53195003 | ID=Msa0606590-mRNA-1:exon:13088;Parent=Msa0606590-mRNA-1 |
| chr4_2 | CDS | 53195003 | 53195788 | 53195003 | ID=Msa0606590-mRNA-1:cds;Parent=Msa0606590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
