AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607920 MtrunA17_Chr4g0039741 95.763 354 3 1 1 354 1 342 0.0 691
Msa0607920 MtrunA17_Chr4g0039751 81.844 358 47 4 1 354 1 344 0.0 591
Msa0607920 MtrunA17_Chr7g0269641 67.016 191 53 4 21 208 2 185 8.72e-79 239
Msa0607920 MtrunA17_Chr7g0269651 65.432 81 26 1 267 347 1 79 1.42e-26 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607920 AT5G03415.1 61.995 371 91 9 21 354 28 385 5.29e-144 413
Msa0607920 AT5G03415.2 60.108 371 92 10 21 354 28 379 6.27e-136 392
Msa0607920 AT5G02470.3 49.130 230 96 4 63 291 32 241 3.43e-72 226
Msa0607920 AT5G02470.1 49.130 230 96 4 63 291 32 241 3.43e-72 226
Msa0607920 AT5G02470.2 49.130 230 96 4 63 291 32 241 3.43e-72 226

Find 177 sgRNAs with CRISPR-Local

Find 690 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATATATTGGTTGGTATT+TGG 0.122069 4_2:+54934386 Msa0607920:three_prime_UTR
AATCACAAAGGTATATTAAT+TGG 0.132489 4_2:-54939225 None:intergenic
ATGTACAGACATGCTTAATT+AGG 0.206763 4_2:-54939185 None:intergenic
GTTCTCAAGGCAATGGATTT+TGG 0.207282 4_2:+54933814 Msa0607920:CDS
TGGATATTAGTTGTGGTATT+TGG 0.212018 4_2:+54939509 Msa0607920:three_prime_UTR
TTGGCGGATGCTAACGATTT+AGG 0.230171 4_2:+54929813 None:intergenic
TTCGGGATTCACTAATTTAC+AGG 0.232522 4_2:+54934327 Msa0607920:three_prime_UTR
CTGTTTGTTTCTTTATCGTT+TGG 0.245613 4_2:+54934152 Msa0607920:three_prime_UTR
TATGGATATATGCTATATAT+TGG 0.265942 4_2:+54934375 Msa0607920:three_prime_UTR
TGTTTGTTTCTTTATCGTTT+GGG 0.268735 4_2:+54934153 Msa0607920:three_prime_UTR
TCCACTCCCTGGAATATTAA+AGG 0.271571 4_2:+54933975 Msa0607920:CDS
CGTTTGCCTCTTTATTGTTT+AGG 0.272662 4_2:+54939299 Msa0607920:three_prime_UTR
CGAGGGAAAGAGGAGATCTT+AGG 0.279392 4_2:-54929918 None:intergenic
GAGAATCAGTTGTAATAAAT+TGG 0.280367 4_2:+54934281 Msa0607920:three_prime_UTR
TATTATTGCTACAAGTTTGT+AGG 0.286595 4_2:+54932821 Msa0607920:CDS
TGTCCTGTTGCTTGTGTTGT+TGG 0.290846 4_2:+54934425 Msa0607920:three_prime_UTR
ATTGTTCATTTCGTTGAATA+AGG 0.299922 4_2:-54932853 None:intergenic
TTACAAATTACACTGTAAAT+CGG 0.306471 4_2:-54939470 None:intergenic
TATACCTGAACCAGAATAAA+AGG 0.312486 4_2:-54932917 None:intergenic
TAAATGTAGTAAATGATAAA+TGG 0.318350 4_2:-54934200 None:intergenic
TATACAACATAGGTTACTTT+CGG 0.325008 4_2:+54934309 Msa0607920:three_prime_UTR
ATACAACATAGGTTACTTTC+GGG 0.332484 4_2:+54934310 Msa0607920:three_prime_UTR
ACTCTTGCCTTTAATATTCC+AGG 0.333887 4_2:-54933982 None:intergenic
TGATGCTCTGAATGTTCTTA+TGG 0.333958 4_2:+54932402 Msa0607920:CDS
TACAAATTACACTGTAAATC+GGG 0.337435 4_2:-54939469 None:intergenic
AACCTTTCATACTAAATTGC+CGG 0.339281 4_2:-54931184 None:intergenic
TCCTGCTCGTTGAGCCTGAT+TGG 0.340052 4_2:-54930207 None:intergenic
TGGTGGTTTGTCCCCTGATC+AGG 0.346346 4_2:+54932236 Msa0607920:CDS
CAGTTTCAAATATGTTAGTT+AGG 0.354238 4_2:+54933938 Msa0607920:CDS
TGAAATTAATCCTATGTTGT+TGG 0.359723 4_2:-54939440 None:intergenic
GATTAACAGCGGCGGTTATT+CGG 0.366058 4_2:-54929941 None:intergenic
AAATGACTTGTCTGTATTGA+TGG 0.366464 4_2:-54939253 None:intergenic
GAAGATAAGAAAACCTGATC+AGG 0.380867 4_2:-54932249 None:intergenic
CGAAGAGGATGAGGAATTGA+TGG 0.384755 4_2:+54930162 Msa0607920:CDS
GGTTGCGGAACTACGATTTC+CGG 0.384781 4_2:+54930184 Msa0607920:CDS
TATTATGAAGGTCTATAATT+CGG 0.409699 4_2:-54934086 None:intergenic
ATACCAACAACACAAGCAAC+AGG 0.415272 4_2:-54934428 None:intergenic
AGCGAGAGGTGAGGTTGTGA+TGG 0.415721 4_2:-54929963 None:intergenic
TTAAATAGACACAGCGTCTT+GGG 0.420475 4_2:+54932603 Msa0607920:intron
ATCAATACAGACAAGTCATT+TGG 0.422322 4_2:+54939255 Msa0607920:three_prime_UTR
TAGGAGTTATGCAGGTAGGA+TGG 0.425576 4_2:+54929832 Msa0607920:five_prime_UTR
TGTACAGACATGCTTAATTA+GGG 0.426762 4_2:-54939184 None:intergenic
ACTACGATTTCCGGCCAATC+AGG 0.431678 4_2:+54930193 Msa0607920:CDS
GGCTCAACGAGCAGGAGTGC+CGG 0.432075 4_2:+54930214 Msa0607920:CDS
GCCTTTAATATTCCAGGGAG+TGG 0.432840 4_2:-54933976 None:intergenic
GTCTGCTCACTCCGGCTAGA+TGG 0.433095 4_2:-54930241 None:intergenic
ATCACAAAGGTATATTAATT+GGG 0.436078 4_2:-54939224 None:intergenic
GAAAGTAACCTATGTTGTAT+AGG 0.443564 4_2:-54934307 None:intergenic
TCTGCCAAGGTAGTAATTGA+TGG 0.444466 4_2:-54939342 None:intergenic
AGACACAGCGTCTTGGGCTT+AGG 0.448668 4_2:+54932609 Msa0607920:intron
CTTTATCGTTTGGGGTAGAC+TGG 0.450774 4_2:+54934162 Msa0607920:three_prime_UTR
TCCTCATGCAACTGTGGAAG+TGG 0.457569 4_2:+54933445 Msa0607920:CDS
TTCTTCATATTGCGTGCCCT+AGG 0.459014 4_2:+54930048 Msa0607920:five_prime_UTR
GTTAGTCATCAGTACAGCTT+TGG 0.461202 4_2:+54934109 Msa0607920:three_prime_UTR
ATTAAATAGACACAGCGTCT+TGG 0.463317 4_2:+54932602 Msa0607920:intron
GCCAATCAGGCTCAACGAGC+AGG 0.466675 4_2:+54930206 Msa0607920:CDS
GATATATGCTATATATTGGT+TGG 0.468174 4_2:+54934379 Msa0607920:three_prime_UTR
GGGGAAGGTTCTAGCATGTC+AGG 0.468504 4_2:+54933889 Msa0607920:CDS
AGACTTACGCAACTACTGCC+TGG 0.468595 4_2:-54930339 None:intergenic
GCTAGAGAGATCAGAGATCA+TGG 0.468871 4_2:+54939409 Msa0607920:three_prime_UTR
GGCTATGAATATTATTTCCA+AGG 0.477616 4_2:+54932423 Msa0607920:CDS
GGGGACAAACCACCATTGCT+TGG 0.478427 4_2:-54932228 None:intergenic
AGGTAAAGATACACCTCCAC+TGG 0.479385 4_2:-54932897 None:intergenic
CTGCTCAAGCTCCTGCAGAT+AGG 0.480130 4_2:-54932654 None:intergenic
GAGTGATATTGAAGAACTAA+AGG 0.483152 4_2:+54932489 Msa0607920:CDS
TTCCTCATCCTCTTCGTCCA+CGG 0.484217 4_2:-54930155 None:intergenic
GTCCGTGGACGAAGAGGATG+AGG 0.484659 4_2:+54930153 Msa0607920:CDS
GAGGGAAAGAGGAGATCTTA+GGG 0.485171 4_2:-54929917 None:intergenic
GCTCAACGAGCAGGAGTGCC+GGG 0.485828 4_2:+54930215 Msa0607920:CDS
CTCCGGCAATTTAGTATGAA+AGG 0.485877 4_2:+54931182 Msa0607920:CDS
AGGAGTTATGCAGGTAGGAT+GGG 0.489677 4_2:+54929833 Msa0607920:five_prime_UTR
GCTCGTTGAGCCTGATTGGC+CGG 0.490544 4_2:-54930203 None:intergenic
AATGAACAATTATATAGCTC+AGG 0.501710 4_2:+54932866 Msa0607920:CDS
GGGACAAACCACCATTGCTT+GGG 0.502306 4_2:-54932227 None:intergenic
TATACAGACATGCTTAAGTA+AGG 0.506147 4_2:-54934046 None:intergenic
AGCCGGAGTGAGCAGACCAC+GGG 0.509849 4_2:+54930247 Msa0607920:CDS
ATAAGAATGGAAGAGGGCTC+CGG 0.512718 4_2:+54931165 Msa0607920:CDS
AAATCGAAACTGCTCACTAC+AGG 0.513325 4_2:+54930107 Msa0607920:five_prime_UTR
CTCTTGCCTTTAATATTCCA+GGG 0.515553 4_2:-54933981 None:intergenic
ACTGATTCTCTCTTACTACA+TGG 0.516286 4_2:-54934268 None:intergenic
TGATACAAAACAAGATGCAT+TGG 0.516748 4_2:-54939533 None:intergenic
TGTGAGAAGGTAGAAAGTAA+AGG 0.516897 4_2:+54931693 Msa0607920:CDS
TGATGACGATGCTGCTTCCC+AGG 0.519370 4_2:+54930321 Msa0607920:CDS
GGTTATTCGGCGAGGGAAAG+AGG 0.520667 4_2:-54929928 None:intergenic
CAATTATGTTCTCAAGGCAA+TGG 0.525211 4_2:+54933807 Msa0607920:CDS
CCATCCATCAATTACTACCT+TGG 0.526291 4_2:+54939338 Msa0607920:three_prime_UTR
GATGAGGAATTGATGGGTTG+CGG 0.526792 4_2:+54930169 Msa0607920:CDS
CCGACATCACCTCCACTCCC+TGG 0.527073 4_2:+54933964 Msa0607920:CDS
TCTTCATATTGCGTGCCCTA+GGG 0.533444 4_2:+54930049 Msa0607920:five_prime_UTR
GTCTAACCTAAACAATAAAG+AGG 0.536603 4_2:-54939305 None:intergenic
ACTTATGTGGATATTAGTTG+TGG 0.538450 4_2:+54939502 Msa0607920:three_prime_UTR
TTGGTAGGTCAGCAGCAGCT+TGG 0.538837 4_2:+54939274 Msa0607920:three_prime_UTR
GACTTACGCAACTACTGCCT+GGG 0.540927 4_2:-54930338 None:intergenic
TAACGATTTAGGAGTTATGC+AGG 0.543605 4_2:+54929824 None:intergenic
CTAAACAATAAAGAGGCAAA+CGG 0.550320 4_2:-54939298 None:intergenic
CTGATTCTCTCTTACTACAT+GGG 0.550977 4_2:-54934267 None:intergenic
GTCAGGCATGTATCAATCAC+AGG 0.555543 4_2:+54933906 Msa0607920:CDS
GTTTGTTTCTTTATCGTTTG+GGG 0.556298 4_2:+54934154 Msa0607920:three_prime_UTR
ACAGGACAAGCAAGATGCAT+TGG 0.558929 4_2:-54934410 None:intergenic
TTGTCGTCATGCAGCTCGAA+AGG 0.559999 4_2:-54933787 None:intergenic
AAGATAAGAAAACCTGATCA+GGG 0.563158 4_2:-54932248 None:intergenic
CACACAATATTGCGGATGGA+GGG 0.564114 4_2:+54933869 Msa0607920:CDS
CGAAACTGCTCACTACAGGA+TGG 0.565458 4_2:+54930111 Msa0607920:exon
GGCTTAGGAGTAGAATTGAA+AGG 0.565800 4_2:+54932624 Msa0607920:CDS
TTTAATATTCCAGGGAGTGG+AGG 0.566833 4_2:-54933973 None:intergenic
TGTAGTAAATGATAAATGGT+AGG 0.568227 4_2:-54934196 None:intergenic
TTTGAGAGCAGCGTTATCAC+CGG 0.570401 4_2:-54930278 None:intergenic
CAGACCACGGGGACAGCCGC+CGG 0.573222 4_2:+54930259 Msa0607920:CDS
AAGGAAAGCAGCCTATCTGC+AGG 0.574961 4_2:+54932643 Msa0607920:CDS
AATATTGCGGATGGAGGGGA+AGG 0.575401 4_2:+54933874 Msa0607920:CDS
TTCTTCAATATCACTCAGAC+TGG 0.575701 4_2:-54932482 None:intergenic
CTGATGACTAACTATTATGA+AGG 0.576595 4_2:-54934098 None:intergenic
CCAGGGAGTGGAGGTGATGT+CGG 0.580031 4_2:-54933964 None:intergenic
GGAATGGAGTCCAACAACAT+AGG 0.581085 4_2:+54939430 Msa0607920:three_prime_UTR
ATTGGTAACCTATACAACAT+AGG 0.582837 4_2:+54934299 Msa0607920:three_prime_UTR
ACACAATATTGCGGATGGAG+GGG 0.585147 4_2:+54933870 Msa0607920:CDS
AGAGATCAGAGATCATGGAA+TGG 0.587031 4_2:+54939414 Msa0607920:three_prime_UTR
GAGGAGATCTTAGGGAACGC+GGG 0.588075 4_2:-54929909 None:intergenic
TAGGGCACGCAATATGAAGA+AGG 0.591113 4_2:-54930046 None:intergenic
GTGCCGGGTTACCATCTAGC+CGG 0.591553 4_2:+54930230 Msa0607920:CDS
CCAAGGTAGTAATTGATGGA+TGG 0.596183 4_2:-54939338 None:intergenic
CATTTGATAGGGTCCTTGTG+AGG 0.596609 4_2:+54939554 Msa0607920:three_prime_UTR
ACAAATTACACTGTAAATCG+GGG 0.598164 4_2:-54939468 None:intergenic
CAGCGGCGGTTATTCGGCGA+GGG 0.598249 4_2:-54929935 None:intergenic
TCCCCGTGGTCTGCTCACTC+CGG 0.599110 4_2:-54930249 None:intergenic
ACACACAATATTGCGGATGG+AGG 0.602906 4_2:+54933868 Msa0607920:CDS
CTAAATTGATCGAAAACGAA+GGG 0.603489 4_2:-54930079 None:intergenic
GATCTCTCTAGCTACAATGC+GGG 0.606530 4_2:-54939398 None:intergenic
GAAGAGGATGAGGAATTGAT+GGG 0.607086 4_2:+54930163 Msa0607920:CDS
TGACGACAATTATGTTCTCA+AGG 0.607641 4_2:+54933801 Msa0607920:CDS
GATTTAGGAGTTATGCAGGT+AGG 0.608300 4_2:+54929828 Msa0607920:five_prime_UTR
GAAACTGCTCACTACAGGAT+GGG 0.608587 4_2:+54930112 Msa0607920:exon
TCCACTTCCACAGTTGCATG+AGG 0.608745 4_2:-54933446 None:intergenic
GCTAAATTGATCGAAAACGA+AGG 0.611313 4_2:-54930080 None:intergenic
GTCATCAGTACAGCTTTGGT+AGG 0.613336 4_2:+54934113 Msa0607920:three_prime_UTR
GTTACACACAATATTGCGGA+TGG 0.615879 4_2:+54933865 Msa0607920:CDS
TCGGGATTCACTAATTTACA+GGG 0.619569 4_2:+54934328 Msa0607920:three_prime_UTR
TGATTCTCTCTTACTACATG+GGG 0.619753 4_2:-54934266 None:intergenic
TAGCCGGAGTGAGCAGACCA+CGG 0.622633 4_2:+54930246 Msa0607920:CDS
ACAGCGGCGGTTATTCGGCG+AGG 0.626330 4_2:-54929936 None:intergenic
TCAATCGTCCGTGGACGAAG+AGG 0.627914 4_2:+54930147 Msa0607920:CDS
GGGAGTGGAGGTGATGTCGG+AGG 0.628434 4_2:-54933961 None:intergenic
AGGAGATCTTAGGGAACGCG+GGG 0.629465 4_2:-54929908 None:intergenic
GAGAGAGAGAGCGAGAGGTG+AGG 0.630078 4_2:-54929972 None:intergenic
ACTTGTAGCAATAATAAAAG+CGG 0.636430 4_2:-54932814 None:intergenic
ATGGACAGTACGAAACGGAA+GGG 0.638006 4_2:-54934460 None:intergenic
CAATGTTACACACAATATTG+CGG 0.641067 4_2:+54933861 Msa0607920:CDS
TCAGGAAATCCTCCCAGTGG+AGG 0.644133 4_2:+54932884 Msa0607920:CDS
ATACAGACAAGTCATTTGGT+AGG 0.648893 4_2:+54939259 Msa0607920:three_prime_UTR
GACACGTCCTCATGCAACTG+TGG 0.649899 4_2:+54933439 Msa0607920:intron
TGTGTAACATTGTCACTCTG+TGG 0.651492 4_2:-54933850 None:intergenic
GGTCCTTGTGAGGCTCTCTG+TGG 0.654225 4_2:+54939564 Msa0607920:three_prime_UTR
ATCACCGGCGGCTGTCCCCG+TGG 0.656058 4_2:-54930263 None:intergenic
AACATATTTGAAACTGACTG+AGG 0.659643 4_2:-54933931 None:intergenic
AGGAAGAACAACTTACAATG+AGG 0.663086 4_2:+54931713 Msa0607920:CDS
AGAGGAGATCTTAGGGAACG+CGG 0.674684 4_2:-54929910 None:intergenic
GAGCATCATAGACCCTTCGA+CGG 0.678223 4_2:-54932387 None:intergenic
GGTAAAGATACACCTCCACT+GGG 0.679973 4_2:-54932896 None:intergenic
AGACCACAGAGAGCCTCACA+AGG 0.680730 4_2:-54939567 None:intergenic
AGCTCAGGAAATCCTCCCAG+TGG 0.682103 4_2:+54932881 Msa0607920:CDS
GCAGCCGCATCAATCGTCCG+TGG 0.683605 4_2:+54930138 Msa0607920:CDS
AGATAAGAAAACCTGATCAG+GGG 0.686331 4_2:-54932247 None:intergenic
TTGTGATGGATTAACAGCGG+CGG 0.686374 4_2:-54929949 None:intergenic
TTGATGGCTAACAATCACAA+AGG 0.688839 4_2:-54939237 None:intergenic
ATAGGTGGCAGATGAACTTG+TGG 0.689893 4_2:+54932191 Msa0607920:intron
ATTCTCTCTTACTACATGGG+GGG 0.694106 4_2:-54934264 None:intergenic
GATTCTCTCTTACTACATGG+GGG 0.695878 4_2:-54934265 None:intergenic
TCGTCCACGGACGATTGATG+CGG 0.696336 4_2:-54930142 None:intergenic
GAGAGCAGCGTTATCACCGG+CGG 0.697043 4_2:-54930275 None:intergenic
TGATCTCTCTAGCTACAATG+CGG 0.705794 4_2:-54939399 None:intergenic
ACTCCGGCTAGATGGTAACC+CGG 0.712354 4_2:-54930233 None:intergenic
GGGGTGATAAGAATGGAAGA+GGG 0.716134 4_2:+54931159 Msa0607920:CDS
AAAGATACACCTCCACTGGG+AGG 0.724160 4_2:-54932893 None:intergenic
ATATCACTCAGACTGGTACG+AGG 0.734989 4_2:-54932475 None:intergenic
AGGTTGTGATGGATTAACAG+CGG 0.736581 4_2:-54929952 None:intergenic
GCCGGAGTGAGCAGACCACG+GGG 0.739516 4_2:+54930248 Msa0607920:CDS
GGAGATCTTAGGGAACGCGG+GGG 0.744362 4_2:-54929907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAAAAAAAAAAATT+AGG - chr4_2:54932162-54932181 None:intergenic 0.0%
!!! TTTTTAAAAAAAAAAAATAT+AGG + chr4_2:54932173-54932192 Msa0607920:intron 0.0%
!! AAGTATAGATATAAATAAAA+AGG - chr4_2:54931018-54931037 None:intergenic 10.0%
!! GAAAAAAAATATAAGTAATA+CGG - chr4_2:54932117-54932136 None:intergenic 10.0%
!! AAAAAAAAAATTAGGAAATA+AGG - chr4_2:54932154-54932173 None:intergenic 10.0%
!! TTAAAAAAAAAAAATATAGG+TGG + chr4_2:54932176-54932195 Msa0607920:intron 10.0%
!! CAAAATTAAAACTAAAAAAT+AGG + chr4_2:54934600-54934619 Msa0607920:intron 10.0%
!! ATATTAAATATATTCTGAAT+AGG - chr4_2:54937697-54937716 None:intergenic 10.0%
!! TATTCAGAATATATTTAATA+TGG + chr4_2:54937696-54937715 Msa0607920:intron 10.0%
!! ATTCAGAATATATTTAATAT+GGG + chr4_2:54937697-54937716 Msa0607920:intron 10.0%
!! AAATTAATTAGTGGTTAATT+TGG + chr4_2:54930875-54930894 Msa0607920:intron 15.0%
!! TTATTTATATCTATACTTTG+TGG + chr4_2:54931020-54931039 Msa0607920:intron 15.0%
!! CTATTTAAAAAACTAATTGA+AGG - chr4_2:54931964-54931983 None:intergenic 15.0%
!!! CTTCAATTAGTTTTTTAAAT+AGG + chr4_2:54931962-54931981 Msa0607920:intron 15.0%
!!! ATCTTATGAACTTATTTTTT+TGG + chr4_2:54932322-54932341 Msa0607920:intron 15.0%
!!! TCTTATGAACTTATTTTTTT+GGG + chr4_2:54932323-54932342 Msa0607920:intron 15.0%
!!! AAATAATTTTCCCTTTTTTT+GGG + chr4_2:54933158-54933177 Msa0607920:intron 15.0%
!! TAAATGTAGTAAATGATAAA+TGG - chr4_2:54934203-54934222 None:intergenic 15.0%
!!! ATGTTTTAAAAATTTGATCA+TGG - chr4_2:54934827-54934846 None:intergenic 15.0%
!!! TATTCTAAAAAAATTAGAGT+TGG + chr4_2:54935368-54935387 Msa0607920:intron 15.0%
!!! ATATTTAGAATACTTATCTA+GGG - chr4_2:54936500-54936519 None:intergenic 15.0%
!! TGATCATGATAATTATTATT+GGG + chr4_2:54937015-54937034 Msa0607920:intron 15.0%
!!! TATTATTTCTAAGGATAAAA+AGG + chr4_2:54937409-54937428 Msa0607920:intron 15.0%
!! ATCAAATTAAGCAATTAAAA+TGG - chr4_2:54937588-54937607 None:intergenic 15.0%
!!! TTGTTCATTTTGATTTTAAT+AGG + chr4_2:54938626-54938645 Msa0607920:intron 15.0%
!!! AAGATTTTCAATTAGTGAAA+AGG + chr4_2:54930534-54930553 Msa0607920:intron 20.0%
!! TTTATTCAAGGTCTAAAAAA+TGG + chr4_2:54930609-54930628 Msa0607920:intron 20.0%
!! TTAAAACCTGAATTAATTAG+TGG + chr4_2:54930765-54930784 Msa0607920:intron 20.0%
!! AATTAACCACTAATTAATTC+AGG - chr4_2:54930774-54930793 None:intergenic 20.0%
!! GAATTAATTAGTGGTTAATT+TGG + chr4_2:54930774-54930793 Msa0607920:intron 20.0%
!! TTCATTGCAAAATTAATTAG+TGG + chr4_2:54930866-54930885 Msa0607920:intron 20.0%
!! TAAGAATCAATCGAAAATAA+TGG - chr4_2:54931090-54931109 None:intergenic 20.0%
!! TAAAAAGTTAAAGATCAAAG+TGG - chr4_2:54931229-54931248 None:intergenic 20.0%
!! AATCAACAATAAATTAGAGA+GGG - chr4_2:54931663-54931682 None:intergenic 20.0%
!! AAATCAACAATAAATTAGAG+AGG - chr4_2:54931664-54931683 None:intergenic 20.0%
!!! AAAAAACTGGTTTAAAGTAA+AGG - chr4_2:54931744-54931763 None:intergenic 20.0%
!! TTCTATAAATACATACATGT+TGG + chr4_2:54931886-54931905 Msa0607920:intron 20.0%
!!! TATTTGCTATTTACACATTA+AGG + chr4_2:54932289-54932308 Msa0607920:intron 20.0%
!!! CTTATGAACTTATTTTTTTG+GGG + chr4_2:54932324-54932343 Msa0607920:intron 20.0%
!!! TTGTATTTCTTTTTTATCCT+TGG - chr4_2:54932443-54932462 None:intergenic 20.0%
!! AGGATAAAAAAGAAATACAA+TGG + chr4_2:54932443-54932462 Msa0607920:CDS 20.0%
!! TAAAAAAGAAATACAATGGA+AGG + chr4_2:54932447-54932466 Msa0607920:CDS 20.0%
!! AAAAAAGAAATACAATGGAA+GGG + chr4_2:54932448-54932467 Msa0607920:CDS 20.0%
!! AATTTAAAAAATAGCAATCC+AGG - chr4_2:54932726-54932745 None:intergenic 20.0%
!! ATGTAATATATTATCATCCA+AGG - chr4_2:54933007-54933026 None:intergenic 20.0%
!!! GAAATAATTTTCCCTTTTTT+TGG + chr4_2:54933157-54933176 Msa0607920:intron 20.0%
!!! TTGTTCATTTTGATTTCAAT+AGG + chr4_2:54933489-54933508 Msa0607920:CDS 20.0%
!! TATTATGAAGGTCTATAATT+CGG - chr4_2:54934089-54934108 None:intergenic 20.0%
!! TATGGATATATGCTATATAT+TGG + chr4_2:54934375-54934394 Msa0607920:three_prime_UTR 20.0%
!! ATTTCGATGATAAACTAATA+TGG - chr4_2:54934482-54934501 None:intergenic 20.0%
!! ATTAAATCATCTTGATATAC+AGG + chr4_2:54935859-54935878 Msa0607920:intron 20.0%
!!! CATATTTAGAATACTTATCT+AGG - chr4_2:54936501-54936520 None:intergenic 20.0%
!! AAATAGAGATTAATATTGTG+AGG + chr4_2:54936763-54936782 Msa0607920:intron 20.0%
!!! TTATCATGATAGCTTTTTTT+TGG + chr4_2:54936983-54937002 Msa0607920:intron 20.0%
!!! TATCATGATAGCTTTTTTTT+GGG + chr4_2:54936984-54937003 Msa0607920:intron 20.0%
!! GTGATCATGATAATTATTAT+TGG + chr4_2:54937014-54937033 Msa0607920:intron 20.0%
!! TTAAAGTCAAGAAATAAACT+GGG - chr4_2:54937140-54937159 None:intergenic 20.0%
!! ATTAAAGTCAAGAAATAAAC+TGG - chr4_2:54937141-54937160 None:intergenic 20.0%
!!! ATGTGATTGTTTTATATTGT+AGG + chr4_2:54937159-54937178 Msa0607920:intron 20.0%
!!! ACTATATCTGAAATTTTGAA+TGG - chr4_2:54937272-54937291 None:intergenic 20.0%
!! TAAATATATTCTGAATAGGA+TGG - chr4_2:54937693-54937712 None:intergenic 20.0%
!! ATTGTTCATTTCGTTTAATA+AGG - chr4_2:54937841-54937860 None:intergenic 20.0%
!!! AAATATTTTATCAGCTCATT+TGG + chr4_2:54938348-54938367 Msa0607920:intron 20.0%
!!! TTTTATGACACTACTTAATT+AGG - chr4_2:54938738-54938757 None:intergenic 20.0%
!! AAAAGAGAGTAAACATAAAT+AGG - chr4_2:54938895-54938914 None:intergenic 20.0%
!!! ATCACAAAGGTATATTAATT+GGG - chr4_2:54939227-54939246 None:intergenic 20.0%
!!! AATCACAAAGGTATATTAAT+TGG - chr4_2:54939228-54939247 None:intergenic 20.0%
!! TTACAAATTACACTGTAAAT+CGG - chr4_2:54939473-54939492 None:intergenic 20.0%
!!! TTGTTTTGTATCATTTGATA+GGG + chr4_2:54939543-54939562 Msa0607920:three_prime_UTR 20.0%
! GGTTGCATAAAAATAAGTTT+AGG + chr4_2:54929854-54929873 Msa0607920:five_prime_UTR 25.0%
! TATAAATCCGATTTCATGTT+TGG + chr4_2:54930427-54930446 Msa0607920:intron 25.0%
!!! ATGCGTTCAATTTTGATTTA+GGG + chr4_2:54930499-54930518 Msa0607920:intron 25.0%
! TGAAAAGGAAAATGATATAC+TGG + chr4_2:54930549-54930568 Msa0607920:intron 25.0%
!!! AATAAAAAGGTTTTGAATCG+TGG - chr4_2:54931005-54931024 None:intergenic 25.0%
! AATAAAAACAGAGAATTGAC+AGG - chr4_2:54931056-54931075 None:intergenic 25.0%
!! CAAATAAGTTGTTTCAAACA+AGG - chr4_2:54931289-54931308 None:intergenic 25.0%
! TGACATAAACATTTGTGTAA+AGG + chr4_2:54931315-54931334 Msa0607920:intron 25.0%
! TAAACATTTGTGTAAAGGTT+TGG + chr4_2:54931320-54931339 Msa0607920:intron 25.0%
!!! GACAGAGATTTATTTTATTC+AGG + chr4_2:54931600-54931619 Msa0607920:intron 25.0%
! GTAGAGAAAATTGTCAAAAA+TGG - chr4_2:54931626-54931645 None:intergenic 25.0%
!!! TGACAATTTTCTCTACTTTT+TGG + chr4_2:54931630-54931649 Msa0607920:intron 25.0%
! ATCAACAATAAATTAGAGAG+GGG - chr4_2:54931662-54931681 None:intergenic 25.0%
!!! AGACTTTATATTTTAGAACG+TGG - chr4_2:54931844-54931863 None:intergenic 25.0%
! GATAAATCACAACATGAAAT+GGG - chr4_2:54932088-54932107 None:intergenic 25.0%
! TGATAAATCACAACATGAAA+TGG - chr4_2:54932089-54932108 None:intergenic 25.0%
! ATATTGAAGAACTAAAGGTT+TGG + chr4_2:54932494-54932513 Msa0607920:intron 25.0%
! GGTATTAAATCAATTAGAGT+GGG - chr4_2:54932693-54932712 None:intergenic 25.0%
!! CACTCTAATTGATTTAATAC+CGG + chr4_2:54932692-54932711 Msa0607920:intron 25.0%
! ACTTGTAGCAATAATAAAAG+CGG - chr4_2:54932817-54932836 None:intergenic 25.0%
! TATTATTGCTACAAGTTTGT+AGG + chr4_2:54932821-54932840 Msa0607920:CDS 25.0%
! ATTGTTCATTTCGTTGAATA+AGG - chr4_2:54932856-54932875 None:intergenic 25.0%
! AATGAACAATTATATAGCTC+AGG + chr4_2:54932866-54932885 Msa0607920:CDS 25.0%
!! TGTATCTTTACCTTTTATTC+TGG + chr4_2:54932907-54932926 Msa0607920:CDS 25.0%
! TGGATAAAATGACCAAAAAA+AGG - chr4_2:54932961-54932980 None:intergenic 25.0%
! AATTGAACAACAATTTCTAC+TGG - chr4_2:54932981-54933000 None:intergenic 25.0%
! ATTACATGAACTTAAGTAGT+TGG + chr4_2:54933051-54933070 Msa0607920:intron 25.0%
! TAGTATATAGCAGTAACTTT+CGG - chr4_2:54933205-54933224 None:intergenic 25.0%
! ATAACATAGACCCATAAAAT+AGG - chr4_2:54933275-54933294 None:intergenic 25.0%
!! TATTTTATGGGTCTATGTTA+TGG + chr4_2:54933274-54933293 Msa0607920:intron 25.0%
!! ATTTTATGGGTCTATGTTAT+GGG + chr4_2:54933275-54933294 Msa0607920:intron 25.0%
! CTTTATGATACCACAAAATT+AGG - chr4_2:54933600-54933619 None:intergenic 25.0%
!!! ATTTTCAAGTAGATAAGTCT+TGG + chr4_2:54933678-54933697 Msa0607920:intron 25.0%
!!! TTTTCAAGTAGATAAGTCTT+GGG + chr4_2:54933679-54933698 Msa0607920:intron 25.0%
! AGAGAGTAAACATAAATAAG+TGG - chr4_2:54933757-54933776 None:intergenic 25.0%
! CAGTTTCAAATATGTTAGTT+AGG + chr4_2:54933938-54933957 Msa0607920:CDS 25.0%
!! TGTTTGTTTCTTTATCGTTT+GGG + chr4_2:54934153-54934172 Msa0607920:three_prime_UTR 25.0%
! TGTAGTAAATGATAAATGGT+AGG - chr4_2:54934199-54934218 None:intergenic 25.0%
! GAGAATCAGTTGTAATAAAT+TGG + chr4_2:54934281-54934300 Msa0607920:three_prime_UTR 25.0%
!! TATACAACATAGGTTACTTT+CGG + chr4_2:54934309-54934328 Msa0607920:three_prime_UTR 25.0%
!!! GCTAAGTTTTCTAGTTTATA+TGG + chr4_2:54934357-54934376 Msa0607920:three_prime_UTR 25.0%
! GATATATGCTATATATTGGT+TGG + chr4_2:54934379-54934398 Msa0607920:three_prime_UTR 25.0%
! TACCTATAATCAAATCATTC+AGG + chr4_2:54934772-54934791 Msa0607920:intron 25.0%
! ACCTATAATCAAATCATTCA+GGG + chr4_2:54934773-54934792 Msa0607920:intron 25.0%
! AGTCAACCTTTGATATAAAT+GGG - chr4_2:54935214-54935233 None:intergenic 25.0%
! ATTTATATCAAAGGTTGACT+CGG + chr4_2:54935214-54935233 Msa0607920:intron 25.0%
! AAAAAGTAGATCTAATAGAG+GGG - chr4_2:54935491-54935510 None:intergenic 25.0%
! GAAAAAGTAGATCTAATAGA+GGG - chr4_2:54935492-54935511 None:intergenic 25.0%
! AAAAACCTTTCATGCTAAAT+TGG - chr4_2:54936114-54936133 None:intergenic 25.0%
! GATACATATGAAATACTTCA+AGG - chr4_2:54936537-54936556 None:intergenic 25.0%
!! TGAAGTATTTCATATGTATC+CGG + chr4_2:54936537-54936556 Msa0607920:intron 25.0%
! AATCTCTATTTACAAAGCAT+GGG - chr4_2:54936754-54936773 None:intergenic 25.0%
! TAATCTCTATTTACAAAGCA+TGG - chr4_2:54936755-54936774 None:intergenic 25.0%
!!! ATTAGCTTCTAATTGATTTG+TGG + chr4_2:54936810-54936829 Msa0607920:intron 25.0%
!!! ATCATGATAGCTTTTTTTTG+GGG + chr4_2:54936985-54937004 Msa0607920:intron 25.0%
!!! TGATTGTTTTATATTGTAGG+TGG + chr4_2:54937162-54937181 Msa0607920:intron 25.0%
!!! TATTGTAGACTTACTTTTTG+TGG + chr4_2:54937300-54937319 Msa0607920:intron 25.0%
!!! ATTGTAGACTTACTTTTTGT+GGG + chr4_2:54937301-54937320 Msa0607920:intron 25.0%
! AGGATAAAAAGGAAATACAA+TGG + chr4_2:54937420-54937439 Msa0607920:intron 25.0%
! TAAAAAGGAAATACAATGGA+AGG + chr4_2:54937424-54937443 Msa0607920:intron 25.0%
! AAAAAGGAAATACAATGGAA+GGG + chr4_2:54937425-54937444 Msa0607920:intron 25.0%
! AATGAACAATTATATAGCTC+TGG + chr4_2:54932866-54932885 Msa0607920:CDS 25.0%
!! TGTATCTTTACCTTTTATTC+TGG + chr4_2:54932907-54932926 Msa0607920:CDS 25.0%
! GAAACAAAACAAAACAATAG+AGG - chr4_2:54937943-54937962 None:intergenic 25.0%
! AATACAAATGCTTACAAAAG+CGG - chr4_2:54938278-54938297 None:intergenic 25.0%
! GTGTCATAAAATCAGTAATT+TGG + chr4_2:54938747-54938766 Msa0607920:intron 25.0%
! AAAAGTTACCACAAAAAATG+TGG - chr4_2:54939378-54939397 None:intergenic 25.0%
! TGAAATTAATCCTATGTTGT+TGG - chr4_2:54939443-54939462 None:intergenic 25.0%
! TACAAATTACACTGTAAATC+GGG - chr4_2:54939472-54939491 None:intergenic 25.0%
!!! GTAAAGTTTTTCAACTTATG+TGG + chr4_2:54939489-54939508 Msa0607920:three_prime_UTR 25.0%
!!! CTTGTTTTGTATCATTTGAT+AGG + chr4_2:54939542-54939561 Msa0607920:three_prime_UTR 25.0%
CTAAATTGATCGAAAACGAA+GGG - chr4_2:54930082-54930101 None:intergenic 30.0%
AGCTAAACCAAACATGAAAT+CGG - chr4_2:54930437-54930456 None:intergenic 30.0%
! ATTTCATGTTTGGTTTAGCT+TGG + chr4_2:54930437-54930456 Msa0607920:intron 30.0%
! TTTCATGTTTGGTTTAGCTT+GGG + chr4_2:54930438-54930457 Msa0607920:intron 30.0%
!!! CATGCGTTCAATTTTGATTT+AGG + chr4_2:54930498-54930517 Msa0607920:intron 30.0%
CCTTGAATAAAATGTACCAT+TGG - chr4_2:54930600-54930619 None:intergenic 30.0%
! CCAATGGTACATTTTATTCA+AGG + chr4_2:54930597-54930616 Msa0607920:intron 30.0%
TCTAAAAAATGGTCCGTTAT+AGG + chr4_2:54930620-54930639 Msa0607920:intron 30.0%
AACATAGTGAACAAACGTTA+TGG + chr4_2:54930662-54930681 Msa0607920:intron 30.0%
TTGTTCTATACCAATTACCA+TGG - chr4_2:54930694-54930713 None:intergenic 30.0%
! GCAATGAATTTTTCATAGAC+TGG - chr4_2:54930854-54930873 None:intergenic 30.0%
AACCTTTCATACTAAATTGC+CGG - chr4_2:54931187-54931206 None:intergenic 30.0%
! CTTTTAACGTGGTAAAAAAC+TGG - chr4_2:54931757-54931776 None:intergenic 30.0%
! GTTTTGTCAATGATTAAGCA+CGG + chr4_2:54931984-54932003 Msa0607920:intron 30.0%
! TAATTATTAGCCTCAGAAAC+TGG + chr4_2:54932036-54932055 Msa0607920:intron 30.0%
AAGATAAGAAAACCTGATCA+GGG - chr4_2:54932251-54932270 None:intergenic 30.0%
GGCTATGAATATTATTTCCA+AGG + chr4_2:54932423-54932442 Msa0607920:CDS 30.0%
GAGTGATATTGAAGAACTAA+AGG + chr4_2:54932489-54932508 Msa0607920:CDS 30.0%
CGGTATTAAATCAATTAGAG+TGG - chr4_2:54932694-54932713 None:intergenic 30.0%
!!! TTTACCTTTTATTCTGGTTC+AGG + chr4_2:54932913-54932932 Msa0607920:CDS 30.0%
TATACCTGAACCAGAATAAA+AGG - chr4_2:54932920-54932939 None:intergenic 30.0%
! ATTGTTGTTCAATTATGCCT+TGG + chr4_2:54932987-54933006 Msa0607920:intron 30.0%
AGTTACTGCTATATACTAGA+TGG + chr4_2:54933207-54933226 Msa0607920:intron 30.0%
GTCTATGTTATGGGTTTATA+CGG + chr4_2:54933284-54933303 Msa0607920:intron 30.0%
AATCAAATATCAGCACCAAT+AGG - chr4_2:54933395-54933414 None:intergenic 30.0%
!! GTTATGATGTGATTAGCTTT+AGG + chr4_2:54933546-54933565 Msa0607920:intron 30.0%
AGGAAGTCTAAACATTAAGA+CGG - chr4_2:54933580-54933599 None:intergenic 30.0%
! GTTTAGACTTCCTAATTTTG+TGG + chr4_2:54933587-54933606 Msa0607920:intron 30.0%
! TTTTGTGGTATCATAAAGTC+CGG + chr4_2:54933602-54933621 Msa0607920:intron 30.0%
! CAGATAAATTTTCCAACACA+GGG - chr4_2:54933734-54933753 None:intergenic 30.0%
CAATGTTACACACAATATTG+CGG + chr4_2:54933861-54933880 Msa0607920:CDS 30.0%
! AACATATTTGAAACTGACTG+AGG - chr4_2:54933934-54933953 None:intergenic 30.0%
TATACAGACATGCTTAAGTA+AGG - chr4_2:54934049-54934068 None:intergenic 30.0%
CTGATGACTAACTATTATGA+AGG - chr4_2:54934101-54934120 None:intergenic 30.0%
! CTGTTTGTTTCTTTATCGTT+TGG + chr4_2:54934152-54934171 Msa0607920:three_prime_UTR 30.0%
! GTTTGTTTCTTTATCGTTTG+GGG + chr4_2:54934154-54934173 Msa0607920:three_prime_UTR 30.0%
AGAGTTACGGTAAAAATATG+CGG - chr4_2:54934240-54934259 None:intergenic 30.0%
! ATTGGTAACCTATACAACAT+AGG + chr4_2:54934299-54934318 Msa0607920:three_prime_UTR 30.0%
GAAAGTAACCTATGTTGTAT+AGG - chr4_2:54934310-54934329 None:intergenic 30.0%
! ATACAACATAGGTTACTTTC+GGG + chr4_2:54934310-54934329 Msa0607920:three_prime_UTR 30.0%
! GCTATATATTGGTTGGTATT+TGG + chr4_2:54934386-54934405 Msa0607920:three_prime_UTR 30.0%
AGTAATTTAGCAAGTGTAGT+GGG + chr4_2:54934504-54934523 Msa0607920:intron 30.0%
ACCCTGAATGATTTGATTAT+AGG - chr4_2:54934777-54934796 None:intergenic 30.0%
TCCATTACCTCAAATCTAAA+TGG + chr4_2:54934950-54934969 Msa0607920:intron 30.0%
! ACCATTTAGATTTGAGGTAA+TGG - chr4_2:54934954-54934973 None:intergenic 30.0%
!!! GGTGTTGCTTTTATAGATAA+CGG + chr4_2:54934971-54934990 Msa0607920:intron 30.0%
CGTAGAATATTCAATGTTTG+AGG + chr4_2:54935037-54935056 Msa0607920:intron 30.0%
! ATGTGAAATATGGTGTGTTT+TGG - chr4_2:54935105-54935124 None:intergenic 30.0%
GTATTATGCGATGTGAAATA+TGG - chr4_2:54935115-54935134 None:intergenic 30.0%
TCATCACCCATTTATATCAA+AGG + chr4_2:54935205-54935224 Msa0607920:intron 30.0%
GAGTCAACCTTTGATATAAA+TGG - chr4_2:54935215-54935234 None:intergenic 30.0%
AAAAGTAGATCTAATAGAGG+GGG - chr4_2:54935490-54935509 None:intergenic 30.0%
GGAAAAAGTAGATCTAATAG+AGG - chr4_2:54935493-54935512 None:intergenic 30.0%
ATGAAATTGAAGAAGGGAAA+GGG - chr4_2:54935556-54935575 None:intergenic 30.0%
AATGAAATTGAAGAAGGGAA+AGG - chr4_2:54935557-54935576 None:intergenic 30.0%
GTGTGAAAAATGAAGAATTG+CGG - chr4_2:54935581-54935600 None:intergenic 30.0%
GAAGAATCATCATTCATCAA+TGG - chr4_2:54936355-54936374 None:intergenic 30.0%
!! TGAAGTATTGGTATCTGATA+CGG + chr4_2:54936623-54936642 Msa0607920:intron 30.0%
GATTGTGAAATTTGTAGAAG+TGG + chr4_2:54936718-54936737 Msa0607920:intron 30.0%
AATTGATATCTTGCTTCGTA+TGG + chr4_2:54936925-54936944 Msa0607920:intron 30.0%
! TAGACAATATGGATTATGGA+CGG - chr4_2:54937078-54937097 None:intergenic 30.0%
! CAGATAGACAATATGGATTA+TGG - chr4_2:54937082-54937101 None:intergenic 30.0%
AGATAGTCAGATAGACAATA+TGG - chr4_2:54937089-54937108 None:intergenic 30.0%
AAGAAATAAACTGGGAAAAC+AGG - chr4_2:54937132-54937151 None:intergenic 30.0%
TGAATGGCAAACACAATTAA+AGG - chr4_2:54937256-54937275 None:intergenic 30.0%
!!! TTGTAGACTTACTTTTTGTG+GGG + chr4_2:54937302-54937321 Msa0607920:intron 30.0%
!! GGCAATGGATATTATTTCTA+AGG + chr4_2:54937400-54937419 Msa0607920:intron 30.0%
GAATGATATTGAAGAGCTAA+AGG + chr4_2:54937466-54937485 Msa0607920:intron 30.0%
AAGTTATAACTCAAGACTCT+GGG - chr4_2:54937496-54937515 None:intergenic 30.0%
AAAGTTATAACTCAAGACTC+TGG - chr4_2:54937497-54937516 None:intergenic 30.0%
CTAATCCCAAAATTCAATGA+AGG + chr4_2:54937561-54937580 Msa0607920:intron 30.0%
! ATGGACCTTCATTGAATTTT+GGG - chr4_2:54937569-54937588 None:intergenic 30.0%
! AATGGACCTTCATTGAATTT+TGG - chr4_2:54937570-54937589 None:intergenic 30.0%
TATTGTTGCATCAAGTTTGT+AGG + chr4_2:54937806-54937825 Msa0607920:intron 30.0%
! TTTACCTTTTATTCTGGTAC+AGG + chr4_2:54937898-54937917 Msa0607920:intron 30.0%
TTTACCTGTACCAGAATAAA+AGG - chr4_2:54937905-54937924 None:intergenic 30.0%
! AAATGTTGCCAATTTTTCCT+TGG + chr4_2:54938113-54938132 Msa0607920:intron 30.0%
TTGAAGATCCAAGGAAAAAT+TGG - chr4_2:54938124-54938143 None:intergenic 30.0%
ATCATACAATTGAAGATCCA+AGG - chr4_2:54938133-54938152 None:intergenic 30.0%
ATACAAATGCTTACAAAAGC+GGG - chr4_2:54938277-54938296 None:intergenic 30.0%
TCAAGTTATAAACTTTCCTG+TGG - chr4_2:54938453-54938472 None:intergenic 30.0%
GGGATATGAGATTAATCAAA+TGG - chr4_2:54938538-54938557 None:intergenic 30.0%
TTTGATTAATCTCATATCCC+TGG + chr4_2:54938538-54938557 Msa0607920:intron 30.0%
!!! TCTACAGTTTTAAAAAGCCA+GGG - chr4_2:54938558-54938577 None:intergenic 30.0%
! GAAAGAATTTTCATGTAGAG+AGG + chr4_2:54938807-54938826 Msa0607920:intron 30.0%
GAGTAAACATAAATAGGAAG+TGG - chr4_2:54938889-54938908 None:intergenic 30.0%
TGTACAGACATGCTTAATTA+GGG - chr4_2:54939187-54939206 None:intergenic 30.0%
ATGTACAGACATGCTTAATT+AGG - chr4_2:54939188-54939207 None:intergenic 30.0%
! AAATGACTTGTCTGTATTGA+TGG - chr4_2:54939256-54939275 None:intergenic 30.0%
ATCAATACAGACAAGTCATT+TGG + chr4_2:54939255-54939274 Msa0607920:three_prime_UTR 30.0%
CTAAACAATAAAGAGGCAAA+CGG - chr4_2:54939301-54939320 None:intergenic 30.0%
GTCTAACCTAAACAATAAAG+AGG - chr4_2:54939308-54939327 None:intergenic 30.0%
!! TTTTTCCTCCACATTTTTTG+TGG + chr4_2:54939367-54939386 Msa0607920:three_prime_UTR 30.0%
ACAAATTACACTGTAAATCG+GGG - chr4_2:54939471-54939490 None:intergenic 30.0%
ACTTATGTGGATATTAGTTG+TGG + chr4_2:54939502-54939521 Msa0607920:three_prime_UTR 30.0%
TGGATATTAGTTGTGGTATT+TGG + chr4_2:54939509-54939528 Msa0607920:three_prime_UTR 30.0%
TGATACAAAACAAGATGCAT+TGG - chr4_2:54939536-54939555 None:intergenic 30.0%
GCTAAATTGATCGAAAACGA+AGG - chr4_2:54930083-54930102 None:intergenic 35.0%
! AATCTAGAAAGTGCAGAGAT+TGG - chr4_2:54930368-54930387 None:intergenic 35.0%
ATTGGAAGTAATGTATAGCC+AGG - chr4_2:54930582-54930601 None:intergenic 35.0%
TGGCTATACATTACTTCCAA+TGG + chr4_2:54930581-54930600 Msa0607920:intron 35.0%
TTTCATGACTTTGGCTGTTA+CGG - chr4_2:54930970-54930989 None:intergenic 35.0%
CGCTAAGAATTTCATGACTT+TGG - chr4_2:54930979-54930998 None:intergenic 35.0%
GTACTGCATAAACATTGAGT+GGG - chr4_2:54931113-54931132 None:intergenic 35.0%
AGAGTTTATGCATAAGCTCT+TGG + chr4_2:54931451-54931470 Msa0607920:intron 35.0%
TGTGAGAAGGTAGAAAGTAA+AGG + chr4_2:54931693-54931712 Msa0607920:CDS 35.0%
AGGAAGAACAACTTACAATG+AGG + chr4_2:54931713-54931732 Msa0607920:CDS 35.0%
GAACAACTTACAATGAGGTT+AGG + chr4_2:54931718-54931737 Msa0607920:intron 35.0%
CGCTATAGCATTTATTGAGT+TGG - chr4_2:54931815-54931834 None:intergenic 35.0%
!!! ATTAAGCACGGTGGTTTTTT+TGG + chr4_2:54931996-54932015 Msa0607920:intron 35.0%
!!! TTAAGCACGGTGGTTTTTTT+GGG + chr4_2:54931997-54932016 Msa0607920:intron 35.0%
! TCTGAGGCTAATAATTACCA+CGG - chr4_2:54932033-54932052 None:intergenic 35.0%
AATCACAACATGAAATGGGT+AGG - chr4_2:54932084-54932103 None:intergenic 35.0%
AGATAAGAAAACCTGATCAG+GGG - chr4_2:54932250-54932269 None:intergenic 35.0%
GAAGATAAGAAAACCTGATC+AGG - chr4_2:54932252-54932271 None:intergenic 35.0%
ATGAAAAAAACATCCGTCGA+AGG + chr4_2:54932374-54932393 Msa0607920:CDS 35.0%
TGAAAAAAACATCCGTCGAA+GGG + chr4_2:54932375-54932394 Msa0607920:CDS 35.0%
! TGATGCTCTGAATGTTCTTA+TGG + chr4_2:54932402-54932421 Msa0607920:CDS 35.0%
TTCTTCAATATCACTCAGAC+TGG - chr4_2:54932485-54932504 None:intergenic 35.0%
TTAGATCAGAACATCACTGA+AGG - chr4_2:54932564-54932583 None:intergenic 35.0%
ATTAAATAGACACAGCGTCT+TGG + chr4_2:54932602-54932621 Msa0607920:intron 35.0%
TTAAATAGACACAGCGTCTT+GGG + chr4_2:54932603-54932622 Msa0607920:intron 35.0%
TTAAATCAATTAGAGTGGGC+TGG - chr4_2:54932689-54932708 None:intergenic 35.0%
!!! TCTCAGTATCTGCCTTTTTT+TGG + chr4_2:54932946-54932965 Msa0607920:intron 35.0%
ATGAACTTAAGTAGTTGGCT+TGG + chr4_2:54933056-54933075 Msa0607920:intron 35.0%
GAAAATAGATCTTATCCAGC+TGG + chr4_2:54933119-54933138 Msa0607920:intron 35.0%
TAGTTAATTCACTAACCAGC+TGG - chr4_2:54933137-54933156 None:intergenic 35.0%
CAAACGAATGCCCAAAAAAA+GGG - chr4_2:54933171-54933190 None:intergenic 35.0%
! TTGTTTAGTTCAGCTTACTC+TGG + chr4_2:54933246-54933265 Msa0607920:intron 35.0%
! TACTCTGGTTGCCTATTTTA+TGG + chr4_2:54933261-54933280 Msa0607920:intron 35.0%
! ACTCTGGTTGCCTATTTTAT+GGG + chr4_2:54933262-54933281 Msa0607920:intron 35.0%
GAATAATATGCTCATCCTGT+TGG + chr4_2:54933353-54933372 Msa0607920:intron 35.0%
AACTCAGATAATGACAAGCA+AGG - chr4_2:54933529-54933548 None:intergenic 35.0%
! GCAGATAAATTTTCCAACAC+AGG - chr4_2:54933735-54933754 None:intergenic 35.0%
TGACGACAATTATGTTCTCA+AGG + chr4_2:54933801-54933820 Msa0607920:CDS 35.0%
CAATTATGTTCTCAAGGCAA+TGG + chr4_2:54933807-54933826 Msa0607920:CDS 35.0%
CTCTTGCCTTTAATATTCCA+GGG - chr4_2:54933984-54934003 None:intergenic 35.0%
ACTCTTGCCTTTAATATTCC+AGG - chr4_2:54933985-54934004 None:intergenic 35.0%
TGATTCTCTCTTACTACATG+GGG - chr4_2:54934269-54934288 None:intergenic 35.0%
CTGATTCTCTCTTACTACAT+GGG - chr4_2:54934270-54934289 None:intergenic 35.0%
! ACTGATTCTCTCTTACTACA+TGG - chr4_2:54934271-54934290 None:intergenic 35.0%
TTCGGGATTCACTAATTTAC+AGG + chr4_2:54934327-54934346 Msa0607920:three_prime_UTR 35.0%
TCGGGATTCACTAATTTACA+GGG + chr4_2:54934328-54934347 Msa0607920:three_prime_UTR 35.0%
CTAATATGGACAGTACGAAA+CGG - chr4_2:54934468-54934487 None:intergenic 35.0%
CAGTAATTTAGCAAGTGTAG+TGG + chr4_2:54934503-54934522 Msa0607920:intron 35.0%
! AAGTGTAGTGGGAAATTGAT+TGG + chr4_2:54934515-54934534 Msa0607920:intron 35.0%
AATACTTGAGCAAATGCAGT+CGG - chr4_2:54934559-54934578 None:intergenic 35.0%
TCGGCTAACTCGATAAAAAT+TGG + chr4_2:54934656-54934675 Msa0607920:intron 35.0%
ATGGAACATTGTACTGTTTC+GGG - chr4_2:54934808-54934827 None:intergenic 35.0%
CATGGAACATTGTACTGTTT+CGG - chr4_2:54934809-54934828 None:intergenic 35.0%
AGCAACACCATTTAGATTTG+AGG - chr4_2:54934960-54934979 None:intergenic 35.0%
AGTTCAACTTCTGACTGTTA+CGG + chr4_2:54935273-54935292 Msa0607920:intron 35.0%
ATACACTTTAAACCTTGCGT+AGG + chr4_2:54935391-54935410 Msa0607920:intron 35.0%
TACACTTTAAACCTTGCGTA+GGG + chr4_2:54935392-54935411 Msa0607920:intron 35.0%
TACTAGGGATTGGAGAATTT+AGG + chr4_2:54935416-54935435 Msa0607920:intron 35.0%
GCGGAAATGAAATTGAAGAA+GGG - chr4_2:54935562-54935581 None:intergenic 35.0%
TGCGGAAATGAAATTGAAGA+AGG - chr4_2:54935563-54935582 None:intergenic 35.0%
!! GAGGAAGAATTTGAGTTGTA+GGG - chr4_2:54935603-54935622 None:intergenic 35.0%
!! TGAGGAAGAATTTGAGTTGT+AGG - chr4_2:54935604-54935623 None:intergenic 35.0%
!! CGATTTCTGAAGTGAAATGA+TGG - chr4_2:54935632-54935651 None:intergenic 35.0%
GCAAAACCTTAATTGAGAGA+GGG - chr4_2:54935675-54935694 None:intergenic 35.0%
AGCAAAACCTTAATTGAGAG+AGG - chr4_2:54935676-54935695 None:intergenic 35.0%
CATGTCATGCAAATTGCTTA+TGG + chr4_2:54935941-54935960 Msa0607920:intron 35.0%
CTTGTGATGCAAATTGCTTA+TGG + chr4_2:54936003-54936022 Msa0607920:intron 35.0%
AGTAGCAAGAAGAAAAAGAG+AGG + chr4_2:54936043-54936062 Msa0607920:intron 35.0%
TGTGAGAAGGTAGAAAGTAA+AGG + chr4_2:54931693-54931712 Msa0607920:CDS 35.0%
AGGAAGAACAACTTACAATG+AGG + chr4_2:54931713-54931732 Msa0607920:CDS 35.0%
!!! TAGCTTTTTTTTGGGGATGA+AGG + chr4_2:54936992-54937011 Msa0607920:intron 35.0%
ATTATTGGGTCAAGAACTTG+TGG + chr4_2:54937029-54937048 Msa0607920:intron 35.0%
GATTATGGACGGATGATAAA+AGG - chr4_2:54937067-54937086 None:intergenic 35.0%
AAGGAGAGAAAACCTTATCA+GGG - chr4_2:54937237-54937256 None:intergenic 35.0%
AAAGGAGAGAAAACCTTATC+AGG - chr4_2:54937238-54937257 None:intergenic 35.0%
ATGAGAAAAACATTCGTCGA+AGG + chr4_2:54937351-54937370 Msa0607920:intron 35.0%
TGAGAAAAACATTCGTCGAA+GGG + chr4_2:54937352-54937371 Msa0607920:intron 35.0%
ATATCATTCAGACTAGTACG+AGG - chr4_2:54937455-54937474 None:intergenic 35.0%
CAGGTAAAGCATAAGATACA+TGG - chr4_2:54937526-54937545 None:intergenic 35.0%
TTAGCTCAGAATATCATTGC+AGG - chr4_2:54937545-54937564 None:intergenic 35.0%
TGCAATTTCAAATGCAGCAA+AGG - chr4_2:54937731-54937750 None:intergenic 35.0%
AATAGAGGAAGTTGAGATGA+TGG - chr4_2:54937928-54937947 None:intergenic 35.0%
!!! TGTTTTGTTTCGTTTCCCAT+AGG + chr4_2:54937952-54937971 Msa0607920:intron 35.0%
! AAATTGGCAACATTTGCTAC+TGG - chr4_2:54938108-54938127 None:intergenic 35.0%
ATATAAAGCCAAAAGGCAAC+CGG - chr4_2:54938390-54938409 None:intergenic 35.0%
TGAGCAGATATAAAGCCAAA+AGG - chr4_2:54938397-54938416 None:intergenic 35.0%
ATATCTGCTCAATGCTATGT+CGG + chr4_2:54938406-54938425 Msa0607920:intron 35.0%
!!! GTCTACAGTTTTAAAAAGCC+AGG - chr4_2:54938559-54938578 None:intergenic 35.0%
GGTAAAACTTCACTTTCCTT+TGG + chr4_2:54938647-54938666 Msa0607920:intron 35.0%
TAACTTAGAAAGAACGCCAA+AGG - chr4_2:54938666-54938685 None:intergenic 35.0%
TTGGCGTTCTTTCTAAGTTA+TGG + chr4_2:54938666-54938685 Msa0607920:intron 35.0%
AAGTTATGGCGTGATTATCT+AGG + chr4_2:54938680-54938699 Msa0607920:intron 35.0%
! ATTTTCATGTAGAGAGGTTC+TGG + chr4_2:54938813-54938832 Msa0607920:intron 35.0%
! TTTTCATGTAGAGAGGTTCT+GGG + chr4_2:54938814-54938833 Msa0607920:intron 35.0%
TGACGACAATTATGTGCTTA+AGG + chr4_2:54938945-54938964 Msa0607920:intron 35.0%
CAATTATGTGCTTAAGGCAA+TGG + chr4_2:54938951-54938970 Msa0607920:intron 35.0%
GTTACACACAATGTTACAGA+TGG + chr4_2:54939003-54939022 Msa0607920:intron 35.0%
CTCTTGCCTTTAATATTCCA+GGG - chr4_2:54933984-54934003 None:intergenic 35.0%
ACTCTTGCCTTTAATATTCC+AGG - chr4_2:54933985-54934004 None:intergenic 35.0%
! TTGATGGCTAACAATCACAA+AGG - chr4_2:54939240-54939259 None:intergenic 35.0%
ATACAGACAAGTCATTTGGT+AGG + chr4_2:54939259-54939278 Msa0607920:three_prime_UTR 35.0%
CGTTTGCCTCTTTATTGTTT+AGG + chr4_2:54939299-54939318 Msa0607920:three_prime_UTR 35.0%
AGTTACCACAAAAAATGTGG+AGG - chr4_2:54939375-54939394 None:intergenic 35.0%
GATTTAGGAGTTATGCAGGT+AGG + chr4_2:54929828-54929847 Msa0607920:five_prime_UTR 40.0%
!! AGGTTGTGATGGATTAACAG+CGG - chr4_2:54929955-54929974 None:intergenic 40.0%
AAATCGAAACTGCTCACTAC+AGG + chr4_2:54930107-54930126 Msa0607920:five_prime_UTR 40.0%
GAAGAGGATGAGGAATTGAT+GGG + chr4_2:54930163-54930182 Msa0607920:CDS 40.0%
!! TTTAGCTTGGGATGAGATTC+TGG + chr4_2:54930450-54930469 Msa0607920:intron 40.0%
TGATATACTGGACTTGAACC+TGG + chr4_2:54930561-54930580 Msa0607920:intron 40.0%
GTATCAGACACTGCCTATAA+CGG - chr4_2:54930636-54930655 None:intergenic 40.0%
GTTATAGGCAGTGTCTGATA+CGG + chr4_2:54930635-54930654 Msa0607920:intron 40.0%
GTGAACAAACGTTATGGAAG+CGG + chr4_2:54930668-54930687 Msa0607920:intron 40.0%
GGTACTGCATAAACATTGAG+TGG - chr4_2:54931114-54931133 None:intergenic 40.0%
GTACCAAGAAGAAAAAGCGA+CGG + chr4_2:54931129-54931148 Msa0607920:intron 40.0%
TACCAAGAAGAAAAAGCGAC+GGG + chr4_2:54931130-54931149 Msa0607920:CDS 40.0%
CTCCGGCAATTTAGTATGAA+AGG + chr4_2:54931182-54931201 Msa0607920:CDS 40.0%
AGGATAAGTGCAACTTTGCA+AGG - chr4_2:54931269-54931288 None:intergenic 40.0%
TGCTTCGATAAGCTATTGTG+AGG - chr4_2:54931383-54931402 None:intergenic 40.0%
TCAGCATTCAGCATACTAAG+GGG - chr4_2:54931529-54931548 None:intergenic 40.0%
CTCAGCATTCAGCATACTAA+GGG - chr4_2:54931530-54931549 None:intergenic 40.0%
ACTCAGCATTCAGCATACTA+AGG - chr4_2:54931531-54931550 None:intergenic 40.0%
AATTGTGAAACTTGCAGCAG+TGG + chr4_2:54931562-54931581 Msa0607920:intron 40.0%
! ATTTTCTGCAGTGTGTGAGA+AGG + chr4_2:54931680-54931699 Msa0607920:intron 40.0%
! AAAAGCACAGTTCTCGATCA+TGG + chr4_2:54931772-54931791 Msa0607920:intron 40.0%
TTGTCAATGATTAAGCACGG+TGG + chr4_2:54931987-54932006 Msa0607920:intron 40.0%
! GAATTTTCTGACCCAAGCAA+TGG + chr4_2:54932216-54932235 Msa0607920:CDS 40.0%
GGCTTAGGAGTAGAATTGAA+AGG + chr4_2:54932624-54932643 Msa0607920:CDS 40.0%
TTAATACCGGAATGCTAACC+TGG + chr4_2:54932705-54932724 Msa0607920:intron 40.0%
AAAGGCAGATACTGAGATGA+TGG - chr4_2:54932943-54932962 None:intergenic 40.0%
CCAAACGAATGCCCAAAAAA+AGG - chr4_2:54933172-54933191 None:intergenic 40.0%
!!! CCTTTTTTTGGGCATTCGTT+TGG + chr4_2:54933169-54933188 Msa0607920:intron 40.0%
!! ACTTTCTAAGATCCATGACC+AGG - chr4_2:54933316-54933335 None:intergenic 40.0%
GTATCATAAAGTCCGGAAAG+TGG + chr4_2:54933609-54933628 Msa0607920:intron 40.0%
!! ATACACTGGTTTCCACTTTC+CGG - chr4_2:54933624-54933643 None:intergenic 40.0%
GAAACCAGTGTATCCTATTG+TGG + chr4_2:54933631-54933650 Msa0607920:intron 40.0%
TTGACCACAATAGGATACAC+TGG - chr4_2:54933638-54933657 None:intergenic 40.0%
TCCTATTGTGGTCAAACACT+CGG + chr4_2:54933643-54933662 Msa0607920:intron 40.0%
ATAAGTCTTGGGAGCTAGTT+AGG + chr4_2:54933690-54933709 Msa0607920:intron 40.0%
TAAGTCTTGGGAGCTAGTTA+GGG + chr4_2:54933691-54933710 Msa0607920:intron 40.0%
!! GTTCTCAAGGCAATGGATTT+TGG + chr4_2:54933814-54933833 Msa0607920:CDS 40.0%
!! TCAAGGCAATGGATTTTGGT+GGG + chr4_2:54933818-54933837 Msa0607920:CDS 40.0%
TGTGTAACATTGTCACTCTG+TGG - chr4_2:54933853-54933872 None:intergenic 40.0%
GTTACACACAATATTGCGGA+TGG + chr4_2:54933865-54933884 Msa0607920:CDS 40.0%
TTTAATATTCCAGGGAGTGG+AGG - chr4_2:54933976-54933995 None:intergenic 40.0%
TCCACTCCCTGGAATATTAA+AGG + chr4_2:54933975-54933994 Msa0607920:CDS 40.0%
GTTAGTCATCAGTACAGCTT+TGG + chr4_2:54934109-54934128 Msa0607920:three_prime_UTR 40.0%
ATTCTCTCTTACTACATGGG+GGG - chr4_2:54934267-54934286 None:intergenic 40.0%
GATTCTCTCTTACTACATGG+GGG - chr4_2:54934268-54934287 None:intergenic 40.0%
ATACCAACAACACAAGCAAC+AGG - chr4_2:54934431-54934450 None:intergenic 40.0%
ATACTTGAGCAAATGCAGTC+GGG - chr4_2:54934558-54934577 None:intergenic 40.0%
ACTCAAGTTCGCAAACATCT+TGG + chr4_2:54934695-54934714 Msa0607920:intron 40.0%
!! TTGTACTGTTTCGGGTTTGT+GGG - chr4_2:54934800-54934819 None:intergenic 40.0%
!! ATTGTACTGTTTCGGGTTTG+TGG - chr4_2:54934801-54934820 None:intergenic 40.0%
TCTATATTACGTACGCCTCA+AGG + chr4_2:54934998-54935017 Msa0607920:intron 40.0%
!!! ATGGTGTGTTTTGGTTGTCA+TGG - chr4_2:54935096-54935115 None:intergenic 40.0%
GTTCAACTTCTGACTGTTAC+GGG + chr4_2:54935274-54935293 Msa0607920:intron 40.0%
! TTGTTTGTTGAGTAGCAGCA+CGG - chr4_2:54935459-54935478 None:intergenic 40.0%
!!! AGATCTACTTTTTCCCTCAC+CGG + chr4_2:54935498-54935517 Msa0607920:intron 40.0%
AAATTGAAGAAGGGAAAGGG+CGG - chr4_2:54935553-54935572 None:intergenic 40.0%
CGAAGAGGAAACTACGATTT+CGG + chr4_2:54935736-54935755 Msa0607920:intron 40.0%
GAAGAGGAAACTACGATTTC+GGG + chr4_2:54935737-54935756 Msa0607920:intron 40.0%
AACTTACGCAACTACTCCTT+GGG - chr4_2:54935900-54935919 None:intergenic 40.0%
AAACTTACGCAACTACTCCT+TGG - chr4_2:54935901-54935920 None:intergenic 40.0%
!! TCTTCCACTTTTATCACCTC+CGG - chr4_2:54936083-54936102 None:intergenic 40.0%
GAGGTGATAAAAGTGGAAGA+GGG + chr4_2:54936083-54936102 Msa0607920:intron 40.0%
CTTCGCCAATTTAGCATGAA+AGG + chr4_2:54936106-54936125 Msa0607920:intron 40.0%
!! TCCAGGTTTCATAGTTTGCT+AGG - chr4_2:54936185-54936204 None:intergenic 40.0%
!! TGGATACCTAGTACTGATGT+GGG + chr4_2:54936201-54936220 Msa0607920:intron 40.0%
GGGTACATGTGAGAAATTAG+TGG - chr4_2:54936480-54936499 None:intergenic 40.0%
CAATACTTCACGAATACTCG+TGG - chr4_2:54936613-54936632 None:intergenic 40.0%
CACGAGTATTCGTGAAGTAT+TGG + chr4_2:54936611-54936630 Msa0607920:intron 40.0%
TGATACGGATGTCTCCAATT+TGG + chr4_2:54936638-54936657 Msa0607920:intron 40.0%
GTCTCCAATTTGGATTATCC+AGG + chr4_2:54936648-54936667 Msa0607920:intron 40.0%
GAAGCCTGGATAATCCAAAT+TGG - chr4_2:54936655-54936674 None:intergenic 40.0%
!! CGTGCTGACAATTTTCTTTC+TGG + chr4_2:54936787-54936806 Msa0607920:intron 40.0%
GTTCTTTGTAGTGTGTGAGA+AGG + chr4_2:54936832-54936851 Msa0607920:intron 40.0%
CAACTTACAATGAGGTTAGC+TGG + chr4_2:54936873-54936892 Msa0607920:intron 40.0%
AGGAGAGAAAACCTTATCAG+GGG - chr4_2:54937236-54937255 None:intergenic 40.0%
!!! GACTTACTTTTTGTGGGGAT+TGG + chr4_2:54937307-54937326 Msa0607920:intron 40.0%
! TGATGCTCTGAATGTTCTCA+TGG + chr4_2:54937379-54937398 Msa0607920:intron 40.0%
TCTGAATGTTCTCATGGCAA+TGG + chr4_2:54937385-54937404 Msa0607920:intron 40.0%
! ATTTAACAGACAGAGCGTCT+TGG + chr4_2:54937606-54937625 Msa0607920:intron 40.0%
! TTTAACAGACAGAGCGTCTT+GGG + chr4_2:54937607-54937626 Msa0607920:intron 40.0%
GGCTCAGGAATAGAATTGAA+AGG + chr4_2:54937628-54937647 Msa0607920:intron 40.0%
AAGGAAATCATCCTATCTGC+AGG + chr4_2:54937647-54937666 Msa0607920:intron 40.0%
ACATGATTACCTCCAGTGAA+GGG - chr4_2:54937980-54937999 None:intergenic 40.0%
AACATGATTACCTCCAGTGA+AGG - chr4_2:54937981-54938000 None:intergenic 40.0%
TCACTGGAGGTAATCATGTT+TGG + chr4_2:54937981-54938000 Msa0607920:intron 40.0%
! ATCATGTTTGGCACTGAATG+TGG + chr4_2:54937993-54938012 Msa0607920:intron 40.0%
! TCATGTTTGGCACTGAATGT+GGG + chr4_2:54937994-54938013 Msa0607920:intron 40.0%
ATCAAAAGAGACACCAACTG+AGG - chr4_2:54938077-54938096 None:intergenic 40.0%
GTACATGTTGTGCAGTGAAT+TGG - chr4_2:54938161-54938180 None:intergenic 40.0%
GCTTACAAAAGCGGGAAAAA+AGG - chr4_2:54938269-54938288 None:intergenic 40.0%
TGGTCGAGTTCACTTTATTC+CGG + chr4_2:54938368-54938387 Msa0607920:intron 40.0%
! ACTTTATTCCGGTTGCCTTT+TGG + chr4_2:54938379-54938398 Msa0607920:intron 40.0%
TATCTGCTCAATGCTATGTC+GGG + chr4_2:54938407-54938426 Msa0607920:intron 40.0%
GGGTCTATACGTTGAATTCT+TGG + chr4_2:54938427-54938446 Msa0607920:intron 40.0%
CGTGATTATCTAGGTCTGAA+TGG + chr4_2:54938689-54938708 Msa0607920:intron 40.0%
GGAACTAGTGTCTCCTATTA+TGG + chr4_2:54938768-54938787 Msa0607920:intron 40.0%
TTCTTTCCGTTGCCTCTATT+CGG - chr4_2:54938794-54938813 None:intergenic 40.0%
TTGTCGTCATGCAACTCAAA+AGG - chr4_2:54938934-54938953 None:intergenic 40.0%
GTGCTTAAGGCAATGGAATT+TGG + chr4_2:54938958-54938977 Msa0607920:intron 40.0%
ACACACAATGTTACAGATGG+AGG + chr4_2:54939006-54939025 Msa0607920:intron 40.0%
CACACAATGTTACAGATGGA+GGG + chr4_2:54939007-54939026 Msa0607920:intron 40.0%
ACACAATGTTACAGATGGAG+GGG + chr4_2:54939008-54939027 Msa0607920:intron 40.0%
TTTAATATTCCAGGGAGTGG+AGG - chr4_2:54933976-54933995 None:intergenic 40.0%
TCCACTCCCTGGAATATTAA+AGG + chr4_2:54933975-54933994 Msa0607920:CDS 40.0%
CCAAGGTAGTAATTGATGGA+TGG - chr4_2:54939341-54939360 None:intergenic 40.0%
CCATCCATCAATTACTACCT+TGG + chr4_2:54939338-54939357 Msa0607920:three_prime_UTR 40.0%
TCTGCCAAGGTAGTAATTGA+TGG - chr4_2:54939345-54939364 None:intergenic 40.0%
TGGAGGAAAAAAATCTGCCA+AGG - chr4_2:54939358-54939377 None:intergenic 40.0%
TGATCTCTCTAGCTACAATG+CGG - chr4_2:54939402-54939421 None:intergenic 40.0%
AGAGATCAGAGATCATGGAA+TGG + chr4_2:54939414-54939433 Msa0607920:three_prime_UTR 40.0%
TAGGAGTTATGCAGGTAGGA+TGG + chr4_2:54929832-54929851 Msa0607920:five_prime_UTR 45.0%
AGGAGTTATGCAGGTAGGAT+GGG + chr4_2:54929833-54929852 Msa0607920:five_prime_UTR 45.0%
! GGGGGCACGAAATACAAATA+CGG - chr4_2:54929892-54929911 None:intergenic 45.0%
GAGGGAAAGAGGAGATCTTA+GGG - chr4_2:54929920-54929939 None:intergenic 45.0%
GATTAACAGCGGCGGTTATT+CGG - chr4_2:54929944-54929963 None:intergenic 45.0%
!! TTGTGATGGATTAACAGCGG+CGG - chr4_2:54929952-54929971 None:intergenic 45.0%
TAGGGCACGCAATATGAAGA+AGG - chr4_2:54930049-54930068 None:intergenic 45.0%
TTCTTCATATTGCGTGCCCT+AGG + chr4_2:54930048-54930067 Msa0607920:five_prime_UTR 45.0%
TCTTCATATTGCGTGCCCTA+GGG + chr4_2:54930049-54930068 Msa0607920:five_prime_UTR 45.0%
ACGAAGGGAGAAAAACCCTA+GGG - chr4_2:54930067-54930086 None:intergenic 45.0%
AACGAAGGGAGAAAAACCCT+AGG - chr4_2:54930068-54930087 None:intergenic 45.0%
GAAACTGCTCACTACAGGAT+GGG + chr4_2:54930112-54930131 Msa0607920:exon 45.0%
CGAAGAGGATGAGGAATTGA+TGG + chr4_2:54930162-54930181 Msa0607920:CDS 45.0%
!! GATGAGGAATTGATGGGTTG+CGG + chr4_2:54930169-54930188 Msa0607920:CDS 45.0%
TTTGAGAGCAGCGTTATCAC+CGG - chr4_2:54930281-54930300 None:intergenic 45.0%
! GTTATGGATTGTGGTCGTTG+CGG - chr4_2:54930940-54930959 None:intergenic 45.0%
! GGATGTTGCGTTATGGATTG+TGG - chr4_2:54930949-54930968 None:intergenic 45.0%
CTGTTACGGATGTTGCGTTA+TGG - chr4_2:54930956-54930975 None:intergenic 45.0%
GGGGTGATAAGAATGGAAGA+GGG + chr4_2:54931159-54931178 Msa0607920:CDS 45.0%
ATAAGAATGGAAGAGGGCTC+CGG + chr4_2:54931165-54931184 Msa0607920:CDS 45.0%
! CGAGAACTGTGCTTTTAACG+TGG - chr4_2:54931768-54931787 None:intergenic 45.0%
!!! TTTTGGGATCAAGTTGTCCG+TGG + chr4_2:54932013-54932032 Msa0607920:intron 45.0%
TTAGCCTCAGAAACTGGTAG+TGG + chr4_2:54932042-54932061 Msa0607920:intron 45.0%
AAGTCCACTACCAGTTTCTG+AGG - chr4_2:54932049-54932068 None:intergenic 45.0%
ACAACATGAAATGGGTAGGC+AGG - chr4_2:54932080-54932099 None:intergenic 45.0%
ATAGGTGGCAGATGAACTTG+TGG + chr4_2:54932191-54932210 Msa0607920:intron 45.0%
! TTTTCTGACCCAAGCAATGG+TGG + chr4_2:54932219-54932238 Msa0607920:CDS 45.0%
ATATCACTCAGACTGGTACG+AGG - chr4_2:54932478-54932497 None:intergenic 45.0%
! CTGTATCTTTTCTCTCTGCG+TGG + chr4_2:54932527-54932546 Msa0607920:intron 45.0%
AGCAATCCAGGTTAGCATTC+CGG - chr4_2:54932714-54932733 None:intergenic 45.0%
GGTAAAGATACACCTCCACT+GGG - chr4_2:54932899-54932918 None:intergenic 45.0%
AGGTAAAGATACACCTCCAC+TGG - chr4_2:54932900-54932919 None:intergenic 45.0%
GGGTTTATACGGAGAATTCC+TGG + chr4_2:54933295-54933314 Msa0607920:intron 45.0%
ATACGGAGAATTCCTGGTCA+TGG + chr4_2:54933301-54933320 Msa0607920:intron 45.0%
TCCGAGTGTTTGACCACAAT+AGG - chr4_2:54933647-54933666 None:intergenic 45.0%
!! CTCAAGGCAATGGATTTTGG+TGG + chr4_2:54933817-54933836 Msa0607920:CDS 45.0%
!! CAAGGCAATGGATTTTGGTG+GGG + chr4_2:54933819-54933838 Msa0607920:CDS 45.0%
!! AAGGCAATGGATTTTGGTGG+GGG + chr4_2:54933820-54933839 Msa0607920:CDS 45.0%
ACACACAATATTGCGGATGG+AGG + chr4_2:54933868-54933887 Msa0607920:CDS 45.0%
CACACAATATTGCGGATGGA+GGG + chr4_2:54933869-54933888 Msa0607920:CDS 45.0%
ACACAATATTGCGGATGGAG+GGG + chr4_2:54933870-54933889 Msa0607920:CDS 45.0%
GTCAGGCATGTATCAATCAC+AGG + chr4_2:54933906-54933925 Msa0607920:CDS 45.0%
GCCTTTAATATTCCAGGGAG+TGG - chr4_2:54933979-54933998 None:intergenic 45.0%
! GTCATCAGTACAGCTTTGGT+AGG + chr4_2:54934113-54934132 Msa0607920:three_prime_UTR 45.0%
! CTTTATCGTTTGGGGTAGAC+TGG + chr4_2:54934162-54934181 Msa0607920:three_prime_UTR 45.0%
ACAGGACAAGCAAGATGCAT+TGG - chr4_2:54934413-54934432 None:intergenic 45.0%
! TGTCCTGTTGCTTGTGTTGT+TGG + chr4_2:54934425-54934444 Msa0607920:three_prime_UTR 45.0%
ATGGACAGTACGAAACGGAA+GGG - chr4_2:54934463-54934482 None:intergenic 45.0%
TATGGACAGTACGAAACGGA+AGG - chr4_2:54934464-54934483 None:intergenic 45.0%
GAGTCGATCCAAACTTGACT+CGG + chr4_2:54934637-54934656 Msa0607920:intron 45.0%
AAACCTTGCGTAGGGATACT+AGG + chr4_2:54935400-54935419 Msa0607920:intron 45.0%
AACCTTGCGTAGGGATACTA+GGG + chr4_2:54935401-54935420 Msa0607920:intron 45.0%
TAGATCTAATAGAGGGGGAG+CGG - chr4_2:54935485-54935504 None:intergenic 45.0%
AATTGAAGAAGGGAAAGGGC+GGG - chr4_2:54935552-54935571 None:intergenic 45.0%
!! AGTGAAATGATGGAGTGCTG+AGG - chr4_2:54935622-54935641 None:intergenic 45.0%
TTGCAGCCCTCTCTCAATTA+AGG + chr4_2:54935666-54935685 Msa0607920:intron 45.0%
! AAGGTTTTGCTGCCAAACGA+TGG + chr4_2:54935685-54935704 Msa0607920:intron 45.0%
! AGGTTTTGCTGCCAAACGAT+GGG + chr4_2:54935686-54935705 Msa0607920:intron 45.0%
ACTACGATTTCGGGACAATC+AGG + chr4_2:54935746-54935765 Msa0607920:intron 45.0%
TCTGAGAGCAGTGTTATCAC+CGG - chr4_2:54935840-54935859 None:intergenic 45.0%
GGAGGTGATAAAAGTGGAAG+AGG + chr4_2:54936082-54936101 Msa0607920:intron 45.0%
GCCTAGCAAACTATGAAACC+TGG + chr4_2:54936181-54936200 Msa0607920:intron 45.0%
CACATCAGTACTAGGTATCC+AGG - chr4_2:54936202-54936221 None:intergenic 45.0%
!! CTGGATACCTAGTACTGATG+TGG + chr4_2:54936200-54936219 Msa0607920:intron 45.0%
CAAGACAGTACAGTGCAGTA+TGG - chr4_2:54936271-54936290 None:intergenic 45.0%
GGGGTCAAAACACTGTTGAT+TGG - chr4_2:54937217-54937236 None:intergenic 45.0%
!!! CAGTGTTTTGACCCCTGATA+AGG + chr4_2:54937222-54937241 Msa0607920:intron 45.0%
GGTAAAGATACACCTCCACT+GGG - chr4_2:54932899-54932918 None:intergenic 45.0%
AGGTAAAGATACACCTCCAC+TGG - chr4_2:54932900-54932919 None:intergenic 45.0%
AAGAGACACCAACTGAGGTT+GGG - chr4_2:54938072-54938091 None:intergenic 45.0%
AAAGAGACACCAACTGAGGT+TGG - chr4_2:54938073-54938092 None:intergenic 45.0%
!! GCGGGAAAAAAGGTGTTTCT+AGG - chr4_2:54938259-54938278 None:intergenic 45.0%
TACGTTGAATTCTTGGCCAC+AGG + chr4_2:54938434-54938453 Msa0607920:intron 45.0%
! GAAGAATTTGCTTGTCCTGC+TGG + chr4_2:54938483-54938502 Msa0607920:intron 45.0%
GGATGTGATATGGCTCTTAG+TGG + chr4_2:54938507-54938526 Msa0607920:intron 45.0%
TCCTCATGCAACTGTTGAAG+TGG + chr4_2:54938582-54938601 Msa0607920:intron 45.0%
TCCACTTCAACAGTTGCATG+AGG - chr4_2:54938586-54938605 None:intergenic 45.0%
CTCCTATTATGGCCGAATAG+AGG + chr4_2:54938779-54938798 Msa0607920:intron 45.0%
TGCCTCTATTCGGCCATAAT+AGG - chr4_2:54938784-54938803 None:intergenic 45.0%
TTATGGCCGAATAGAGGCAA+CGG + chr4_2:54938785-54938804 Msa0607920:intron 45.0%
AATGTTACAGATGGAGGGGA+AGG + chr4_2:54939012-54939031 Msa0607920:intron 45.0%
GCCTTTAATATTCCAGGGAG+TGG - chr4_2:54933979-54933998 None:intergenic 45.0%
GATCTCTCTAGCTACAATGC+GGG - chr4_2:54939401-54939420 None:intergenic 45.0%
GCTAGAGAGATCAGAGATCA+TGG + chr4_2:54939409-54939428 Msa0607920:three_prime_UTR 45.0%
GGAATGGAGTCCAACAACAT+AGG + chr4_2:54939430-54939449 Msa0607920:three_prime_UTR 45.0%
CATTTGATAGGGTCCTTGTG+AGG + chr4_2:54939554-54939573 Msa0607920:three_prime_UTR 45.0%
!!! TTTAATCAAATTTATATTTT+TGG - chr4_2:54932588-54932607 None:intergenic 5.0%
!! AAAATTAAAACTAAAAAATA+GGG + chr4_2:54934601-54934620 Msa0607920:intron 5.0%
!!! TTTTATATAAAATATTTTAC+CGG - chr4_2:54936559-54936578 None:intergenic 5.0%
AGAGGAGATCTTAGGGAACG+CGG - chr4_2:54929913-54929932 None:intergenic 50.0%
CGAGGGAAAGAGGAGATCTT+AGG - chr4_2:54929921-54929940 None:intergenic 50.0%
CGAAACTGCTCACTACAGGA+TGG + chr4_2:54930111-54930130 Msa0607920:exon 50.0%
TTCCTCATCCTCTTCGTCCA+CGG - chr4_2:54930158-54930177 None:intergenic 50.0%
GGTTGCGGAACTACGATTTC+CGG + chr4_2:54930184-54930203 Msa0607920:CDS 50.0%
ACTACGATTTCCGGCCAATC+AGG + chr4_2:54930193-54930212 Msa0607920:CDS 50.0%
GACTTACGCAACTACTGCCT+GGG - chr4_2:54930341-54930360 None:intergenic 50.0%
AGACTTACGCAACTACTGCC+TGG - chr4_2:54930342-54930361 None:intergenic 50.0%
AAACGTTATGGAAGCGGCCA+TGG + chr4_2:54930674-54930693 Msa0607920:intron 50.0%
ATGGAAGCGGCCATGGTAAT+TGG + chr4_2:54930681-54930700 Msa0607920:intron 50.0%
!!! AGCCCGTCGCTTTTTCTTCT+TGG - chr4_2:54931135-54931154 None:intergenic 50.0%
!! AAGAAAAAGCGACGGGCTGT+TGG + chr4_2:54931137-54931156 Msa0607920:CDS 50.0%
!! AGAAAAAGCGACGGGCTGTT+GGG + chr4_2:54931138-54931157 Msa0607920:CDS 50.0%
GCTGTTGGGGGTGATAAGAA+TGG + chr4_2:54931152-54931171 Msa0607920:CDS 50.0%
GGGGGTGATAAGAATGGAAG+AGG + chr4_2:54931158-54931177 Msa0607920:CDS 50.0%
GCACAGTTCTCGATCATGGA+TGG + chr4_2:54931776-54931795 Msa0607920:intron 50.0%
CTCGATCATGGATGGCAAAG+CGG + chr4_2:54931784-54931803 Msa0607920:intron 50.0%
GGGACAAACCACCATTGCTT+GGG - chr4_2:54932230-54932249 None:intergenic 50.0%
GAGCATCATAGACCCTTCGA+CGG - chr4_2:54932390-54932409 None:intergenic 50.0%
AAGGAAAGCAGCCTATCTGC+AGG + chr4_2:54932643-54932662 Msa0607920:CDS 50.0%
AAAGATACACCTCCACTGGG+AGG - chr4_2:54932896-54932915 None:intergenic 50.0%
TGCTGTGATGTGGCTCCTAT+TGG + chr4_2:54933377-54933396 Msa0607920:intron 50.0%
TCCTCATGCAACTGTGGAAG+TGG + chr4_2:54933445-54933464 Msa0607920:CDS 50.0%
TCCACTTCCACAGTTGCATG+AGG - chr4_2:54933449-54933468 None:intergenic 50.0%
! TGGTGCTTTTGTCCCTGTGT+TGG + chr4_2:54933719-54933738 Msa0607920:intron 50.0%
TTGTCGTCATGCAGCTCGAA+AGG - chr4_2:54933790-54933809 None:intergenic 50.0%
AATATTGCGGATGGAGGGGA+AGG + chr4_2:54933874-54933893 Msa0607920:CDS 50.0%
TCTCTTACTACATGGGGGGA+AGG - chr4_2:54934263-54934282 None:intergenic 50.0%
CGAGTTAGCCGAGTCAAGTT+TGG - chr4_2:54934648-54934667 None:intergenic 50.0%
ATCCCTAGTATCCCTACGCA+AGG - chr4_2:54935406-54935425 None:intergenic 50.0%
TGCGTAGGGATACTAGGGAT+TGG + chr4_2:54935406-54935425 Msa0607920:intron 50.0%
AGCAGCACGGAATACGAATG+CGG - chr4_2:54935446-54935465 None:intergenic 50.0%
AGATCTAATAGAGGGGGAGC+GGG - chr4_2:54935484-54935503 None:intergenic 50.0%
AGAGGGCTGCAATTCAGTTG+CGG - chr4_2:54935658-54935677 None:intergenic 50.0%
GCGATCTTGTTCCCATCGTT+TGG - chr4_2:54935700-54935719 None:intergenic 50.0%
! GATGATGATGCTGCATCCCA+AGG + chr4_2:54935881-54935900 Msa0607920:intron 50.0%
AGAGGCCAACAAAGAGCTAC+CGG + chr4_2:54936061-54936080 Msa0607920:intron 50.0%
GCTACCGGAGGTGATAAAAG+TGG + chr4_2:54936076-54936095 Msa0607920:intron 50.0%
ATCGCACCCACATCAGTACT+AGG - chr4_2:54936210-54936229 None:intergenic 50.0%
CGTTGCTAGCAAAGCACGTT+TGG + chr4_2:54936674-54936693 Msa0607920:intron 50.0%
GTAGGTGGCAGATGAACTTG+TGG + chr4_2:54937177-54937196 Msa0607920:intron 50.0%
ATCCTATCTGCAGGAGCTAG+AGG + chr4_2:54937656-54937675 Msa0607920:intron 50.0%
! TTCCTCTAGCTCCTGCAGAT+AGG - chr4_2:54937661-54937680 None:intergenic 50.0%
AAAGATACACCTCCACTGGG+AGG - chr4_2:54932896-54932915 None:intergenic 50.0%
GTCTCCCATAACGTGAAACC+CGG - chr4_2:54938032-54938051 None:intergenic 50.0%
GAGGTTGGGTATAGCAGAAG+AGG - chr4_2:54938058-54938077 None:intergenic 50.0%
CTGCTATACCCAACCTCAGT+TGG + chr4_2:54938061-54938080 Msa0607920:intron 50.0%
! GAATTTGCTTGTCCTGCTGG+CGG + chr4_2:54938486-54938505 Msa0607920:intron 50.0%
!! TCATGTAGAGAGGTTCTGGG+AGG + chr4_2:54938817-54938836 Msa0607920:intron 50.0%
GTTGACACGCTTGAAGCTGA+AGG - chr4_2:54939075-54939094 None:intergenic 50.0%
AGGAGATCTTAGGGAACGCG+GGG - chr4_2:54929911-54929930 None:intergenic 55.0%
GAGGAGATCTTAGGGAACGC+GGG - chr4_2:54929912-54929931 None:intergenic 55.0%
GGTTATTCGGCGAGGGAAAG+AGG - chr4_2:54929931-54929950 None:intergenic 55.0%
AGCGAGAGGTGAGGTTGTGA+TGG - chr4_2:54929966-54929985 None:intergenic 55.0%
TCAGAGAGAGAGAGAGCGAG+AGG - chr4_2:54929980-54929999 None:intergenic 55.0%
TCGTCCACGGACGATTGATG+CGG - chr4_2:54930145-54930164 None:intergenic 55.0%
TCAATCGTCCGTGGACGAAG+AGG + chr4_2:54930147-54930166 Msa0607920:CDS 55.0%
TCCTGCTCGTTGAGCCTGAT+TGG - chr4_2:54930210-54930229 None:intergenic 55.0%
ACTCCGGCTAGATGGTAACC+CGG - chr4_2:54930236-54930255 None:intergenic 55.0%
! TGATGACGATGCTGCTTCCC+AGG + chr4_2:54930321-54930340 Msa0607920:CDS 55.0%
!! GAAAAAGCGACGGGCTGTTG+GGG + chr4_2:54931139-54931158 Msa0607920:CDS 55.0%
!! AAAAAGCGACGGGCTGTTGG+GGG + chr4_2:54931140-54931159 Msa0607920:CDS 55.0%
CATGAAATGGGTAGGCAGGC+AGG - chr4_2:54932076-54932095 None:intergenic 55.0%
GGGGACAAACCACCATTGCT+TGG - chr4_2:54932231-54932250 None:intergenic 55.0%
! TGGTGGTTTGTCCCCTGATC+AGG + chr4_2:54932236-54932255 Msa0607920:CDS 55.0%
AGACACAGCGTCTTGGGCTT+AGG + chr4_2:54932609-54932628 Msa0607920:intron 55.0%
CTGCTCAAGCTCCTGCAGAT+AGG - chr4_2:54932657-54932676 None:intergenic 55.0%
AGCTCAGGAAATCCTCCCAG+TGG + chr4_2:54932881-54932900 Msa0607920:CDS 55.0%
TCAGGAAATCCTCCCAGTGG+AGG + chr4_2:54932884-54932903 Msa0607920:CDS 55.0%
! TCCTGTTGGCTGCTGTGATG+TGG + chr4_2:54933367-54933386 Msa0607920:intron 55.0%
GACACGTCCTCATGCAACTG+TGG + chr4_2:54933439-54933458 Msa0607920:intron 55.0%
GTCTTGGGAGCTAGTTAGGG+TGG + chr4_2:54933694-54933713 Msa0607920:intron 55.0%
! GGGGAAGGTTCTAGCATGTC+AGG + chr4_2:54933889-54933908 Msa0607920:CDS 55.0%
CATGGGGGGAAGGAGAGTTA+CGG - chr4_2:54934253-54934272 None:intergenic 55.0%
GATCTAATAGAGGGGGAGCG+GGG - chr4_2:54935483-54935502 None:intergenic 55.0%
! TGGTGAGGGATGGTGGTTAC+CGG - chr4_2:54935520-54935539 None:intergenic 55.0%
! GAAAGTACGGTGGTGAGGGA+TGG - chr4_2:54935530-54935549 None:intergenic 55.0%
AGGGAAAGGGCGGGAAAGTA+CGG - chr4_2:54935543-54935562 None:intergenic 55.0%
GCAATCGTGCGTAGACGAAG+AGG + chr4_2:54935721-54935740 Msa0607920:intron 55.0%
GACAATCAGGCTCAACCAGC+AGG + chr4_2:54935759-54935778 Msa0607920:intron 55.0%
GAGAGCAGTGTTATCACCGG+CGG - chr4_2:54935837-54935856 None:intergenic 55.0%
CACCTCCGGTAGCTCTTTGT+TGG - chr4_2:54936069-54936088 None:intergenic 55.0%
GCTTTGCTAGCAACGAAGCC+TGG - chr4_2:54936669-54936688 None:intergenic 55.0%
!! AGCTCTGGAAATCCTCCCAG+TGG + chr4_2:54937866-54937885 Msa0607920:intron 55.0%
TCTGGAAATCCTCCCAGTGG+AGG + chr4_2:54937869-54937888 Msa0607920:intron 55.0%
TTCCCATAGGCTCCCTTCAC+TGG + chr4_2:54937965-54937984 Msa0607920:intron 55.0%
CTCCAGTGAAGGGAGCCTAT+GGG - chr4_2:54937970-54937989 None:intergenic 55.0%
TCCAGCCGGGTTTCACGTTA+TGG + chr4_2:54938024-54938043 Msa0607920:intron 55.0%
CCAGCCGGGTTTCACGTTAT+GGG + chr4_2:54938025-54938044 Msa0607920:intron 55.0%
! TCCTGCTGGCGGATGTGATA+TGG + chr4_2:54938497-54938516 Msa0607920:intron 55.0%
!! GAGGTTCTGGGAGGCTGTTA+TGG + chr4_2:54938826-54938845 Msa0607920:intron 55.0%
! GGGGAAGGTTCTAGCATGTC+AGG + chr4_2:54933889-54933908 Msa0607920:CDS 55.0%
GTCAGGCATGCATCAGTCAC+AGG + chr4_2:54939044-54939063 Msa0607920:intron 55.0%
GACACGCTTGAAGCTGAAGG+AGG - chr4_2:54939072-54939091 None:intergenic 55.0%
TTGGTAGGTCAGCAGCAGCT+TGG + chr4_2:54939274-54939293 Msa0607920:three_prime_UTR 55.0%
AGACCACAGAGAGCCTCACA+AGG - chr4_2:54939570-54939589 None:intergenic 55.0%
GGAGATCTTAGGGAACGCGG+GGG - chr4_2:54929910-54929929 None:intergenic 60.0%
GAGAGAGAGAGCGAGAGGTG+AGG - chr4_2:54929975-54929994 None:intergenic 60.0%
GTCCGTGGACGAAGAGGATG+AGG + chr4_2:54930153-54930172 Msa0607920:CDS 60.0%
GCTCGTTGAGCCTGATTGGC+CGG - chr4_2:54930206-54930225 None:intergenic 60.0%
GCCAATCAGGCTCAACGAGC+AGG + chr4_2:54930206-54930225 Msa0607920:CDS 60.0%
GTGCCGGGTTACCATCTAGC+CGG + chr4_2:54930230-54930249 Msa0607920:CDS 60.0%
GTCTGCTCACTCCGGCTAGA+TGG - chr4_2:54930244-54930263 None:intergenic 60.0%
TAGCCGGAGTGAGCAGACCA+CGG + chr4_2:54930246-54930265 Msa0607920:CDS 60.0%
GAGAGCAGCGTTATCACCGG+CGG - chr4_2:54930278-54930297 None:intergenic 60.0%
GCCACATCACAGCAGCCAAC+AGG - chr4_2:54933371-54933390 None:intergenic 60.0%
GGGAGCTAGTTAGGGTGGTG+TGG + chr4_2:54933699-54933718 Msa0607920:intron 60.0%
CCAGGGAGTGGAGGTGATGT+CGG - chr4_2:54933967-54933986 None:intergenic 60.0%
! GGGATGGTGGTTACCGGTGA+GGG - chr4_2:54935514-54935533 None:intergenic 60.0%
! AGGGATGGTGGTTACCGGTG+AGG - chr4_2:54935515-54935534 None:intergenic 60.0%
AGTACGGTGGTGAGGGATGG+TGG - chr4_2:54935527-54935546 None:intergenic 60.0%
! GCGGGAAAGTACGGTGGTGA+GGG - chr4_2:54935534-54935553 None:intergenic 60.0%
! GAAAGGGCGGGAAAGTACGG+TGG - chr4_2:54935540-54935559 None:intergenic 60.0%
GGCCAACAAAGAGCTACCGG+AGG + chr4_2:54936064-54936083 Msa0607920:intron 60.0%
! AGACAGAGCGTCTTGGGCTC+AGG + chr4_2:54937613-54937632 Msa0607920:intron 60.0%
CCTCCAGTGAAGGGAGCCTA+TGG - chr4_2:54937971-54937990 None:intergenic 60.0%
CCATAGGCTCCCTTCACTGG+AGG + chr4_2:54937968-54937987 Msa0607920:intron 60.0%
ATGTGGGCACCTCTTCCAGC+CGG + chr4_2:54938010-54938029 Msa0607920:intron 60.0%
ACGTGAAACCCGGCTGGAAG+AGG - chr4_2:54938022-54938041 None:intergenic 60.0%
CCCATAACGTGAAACCCGGC+TGG - chr4_2:54938028-54938047 None:intergenic 60.0%
GCCATATCACATCCGCCAGC+AGG - chr4_2:54938501-54938520 None:intergenic 60.0%
GGGAGTGGAGGTGATGTTGG+AGG - chr4_2:54939102-54939121 None:intergenic 60.0%
CCAGGGAGTGGAGGTGATGT+TGG - chr4_2:54933967-54933986 None:intergenic 60.0%
CCAACATCACCTCCACTCCC+TGG + chr4_2:54939102-54939121 Msa0607920:intron 60.0%
GGTCCTTGTGAGGCTCTCTG+TGG + chr4_2:54939564-54939583 Msa0607920:three_prime_UTR 60.0%
CAGCGGCGGTTATTCGGCGA+GGG - chr4_2:54929938-54929957 None:intergenic 65.0%
ACAGCGGCGGTTATTCGGCG+AGG - chr4_2:54929939-54929958 None:intergenic 65.0%
GCAGCCGCATCAATCGTCCG+TGG + chr4_2:54930138-54930157 Msa0607920:CDS 65.0%
! GGCTCAACGAGCAGGAGTGC+CGG + chr4_2:54930214-54930233 Msa0607920:CDS 65.0%
!! GCTCAACGAGCAGGAGTGCC+GGG + chr4_2:54930215-54930234 Msa0607920:CDS 65.0%
AGCCGGAGTGAGCAGACCAC+GGG + chr4_2:54930247-54930266 Msa0607920:CDS 65.0%
TCCCCGTGGTCTGCTCACTC+CGG - chr4_2:54930252-54930271 None:intergenic 65.0%
GGGAGTGGAGGTGATGTCGG+AGG - chr4_2:54933964-54933983 None:intergenic 65.0%
CCGACATCACCTCCACTCCC+TGG + chr4_2:54933964-54933983 Msa0607920:CDS 65.0%
! GGCGGGAAAGTACGGTGGTG+AGG - chr4_2:54935535-54935554 None:intergenic 65.0%
! GGCTCAACCAGCAGGAGTGC+CGG + chr4_2:54935767-54935786 Msa0607920:intron 65.0%
!! TCAACCAGCAGGAGTGCCGG+CGG + chr4_2:54935770-54935789 Msa0607920:intron 65.0%
GTCTGCTCGCTCCGGCTAGA+CGG - chr4_2:54935803-54935822 None:intergenic 65.0%
AGCCGGAGCGAGCAGACGAT+CGG + chr4_2:54935806-54935825 Msa0607920:intron 65.0%
TCCCGATCGTCTGCTCGCTC+CGG - chr4_2:54935811-54935830 None:intergenic 65.0%
TGTGGGCACCTCTTCCAGCC+GGG + chr4_2:54938011-54938030 Msa0607920:intron 65.0%
GCCGGAGTGAGCAGACCACG+GGG + chr4_2:54930248-54930267 Msa0607920:CDS 70.0%
GCCGGAGCGAGCAGACGATC+GGG + chr4_2:54935807-54935826 Msa0607920:intron 70.0%
CAGACGATCGGGACAGCCGC+CGG + chr4_2:54935818-54935837 Msa0607920:intron 70.0%
CAGACCACGGGGACAGCCGC+CGG + chr4_2:54930259-54930278 Msa0607920:CDS 75.0%
ATCACCGGCGGCTGTCCCCG+TGG - chr4_2:54930266-54930285 None:intergenic 75.0%
!! ACCAGCAGGAGTGCCGGCGG+CGG + chr4_2:54935773-54935792 Msa0607920:intron 75.0%
GCTAGACGGCAACCCGCCGC+CGG - chr4_2:54935789-54935808 None:intergenic 75.0%
!! GCGGCGGGTTGCCGTCTAGC+CGG + chr4_2:54935789-54935808 Msa0607920:intron 75.0%
!!! CCAGCAGGAGTGCCGGCGGC+GGG + chr4_2:54935774-54935793 Msa0607920:intron 80.0%
! CCCGCCGCCGGCACTCCTGC+TGG - chr4_2:54935777-54935796 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 54929827 54939601 54929827 ID=Msa0607920;Name=Msa0607920
chr4_2 mRNA 54929827 54939601 54929827 ID=Msa0607920-mRNA-1;Parent=Msa0607920;Name=Msa0607920-mRNA-1;_AED=0.26;_eAED=0.27;_QI=303|0.88|0.9|1|0.88|0.8|10|914|354
chr4_2 exon 54929827 54930353 54929827 ID=Msa0607920-mRNA-1:exon:13880;Parent=Msa0607920-mRNA-1
chr4_2 exon 54931130 54931203 54931130 ID=Msa0607920-mRNA-1:exon:13881;Parent=Msa0607920-mRNA-1
chr4_2 exon 54931691 54931734 54931691 ID=Msa0607920-mRNA-1:exon:13882;Parent=Msa0607920-mRNA-1
chr4_2 exon 54932195 54932257 54932195 ID=Msa0607920-mRNA-1:exon:13883;Parent=Msa0607920-mRNA-1
chr4_2 exon 54932364 54932510 54932364 ID=Msa0607920-mRNA-1:exon:13884;Parent=Msa0607920-mRNA-1
chr4_2 exon 54932611 54932679 54932611 ID=Msa0607920-mRNA-1:exon:13885;Parent=Msa0607920-mRNA-1
chr4_2 exon 54932800 54932934 54932800 ID=Msa0607920-mRNA-1:exon:13886;Parent=Msa0607920-mRNA-1
chr4_2 exon 54933440 54933510 54933440 ID=Msa0607920-mRNA-1:exon:13887;Parent=Msa0607920-mRNA-1
chr4_2 exon 54933783 54934467 54933783 ID=Msa0607920-mRNA-1:exon:13888;Parent=Msa0607920-mRNA-1
chr4_2 exon 54939135 54939601 54939135 ID=Msa0607920-mRNA-1:exon:13889;Parent=Msa0607920-mRNA-1
chr4_2 five_prime_UTR 54929827 54930129 54929827 ID=Msa0607920-mRNA-1:five_prime_utr;Parent=Msa0607920-mRNA-1
chr4_2 CDS 54930130 54930353 54930130 ID=Msa0607920-mRNA-1:cds;Parent=Msa0607920-mRNA-1
chr4_2 CDS 54931130 54931203 54931130 ID=Msa0607920-mRNA-1:cds;Parent=Msa0607920-mRNA-1
chr4_2 CDS 54931691 54931734 54931691 ID=Msa0607920-mRNA-1:cds;Parent=Msa0607920-mRNA-1
chr4_2 CDS 54932195 54932257 54932195 ID=Msa0607920-mRNA-1:cds;Parent=Msa0607920-mRNA-1
chr4_2 CDS 54932364 54932510 54932364 ID=Msa0607920-mRNA-1:cds;Parent=Msa0607920-mRNA-1
chr4_2 CDS 54932611 54932679 54932611 ID=Msa0607920-mRNA-1:cds;Parent=Msa0607920-mRNA-1
chr4_2 CDS 54932800 54932934 54932800 ID=Msa0607920-mRNA-1:cds;Parent=Msa0607920-mRNA-1
chr4_2 CDS 54933440 54933510 54933440 ID=Msa0607920-mRNA-1:cds;Parent=Msa0607920-mRNA-1
chr4_2 CDS 54933783 54934020 54933783 ID=Msa0607920-mRNA-1:cds;Parent=Msa0607920-mRNA-1
chr4_2 three_prime_UTR 54934021 54934467 54934021 ID=Msa0607920-mRNA-1:three_prime_utr;Parent=Msa0607920-mRNA-1
chr4_2 three_prime_UTR 54939135 54939601 54939135 ID=Msa0607920-mRNA-1:three_prime_utr;Parent=Msa0607920-mRNA-1
Gene Sequence

>Msa0607920

ATGGGAACGCAGCCGCATCAATCGTCCGTGGACGAAGAGGATGAGGAATTGATGGGTTGCGGAACTACGATTTCCGGCCAATCAGGCTCAACGAGCAGGAGTGCCGGGTTACCATCTAGCCGGAGTGAGCAGACCACGGGGACAGCCGCCGGTGATAACGCTGCTCTCAAATTGAATCATCTTGATATACATGATGACGATGCTGCTTCCCAGGCAGTAGTTGCTACCAAGAAGAAAAAGCGACGGGCTGTTGGGGGTGATAAGAATGGAAGAGGGCTCCGGCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGTAAAGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTTCTGACCCAAGCAATGGTGGTTTGTCCCCTGATCAGCAACAATATGATGAAAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAATGTTCTTATGGCTATGAATATTATTTCCAAGGATAAAAAAGAAATACAATGGAAGGGTCTTCCTCGTACCAGTCTGAGTGATATTGAAGAACTAAAGACACAGCGTCTTGGGCTTAGGAGTAGAATTGAAAGGAAAGCAGCCTATCTGCAGGAGCTTGAGCAGCAATTTCTGTTTGCTAACCGCTTTTATTATTGCTACAAGTTTGTAGGTCTTCAGAACCTTATTCAACGAAATGAACAATTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTCTGGTTCAGACACGTCCTCATGCAACTGTGGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAATAGTTCTCCTTTCGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGGATTTTGGTGGGGGTGAGAGACCACAGAGTGACAATGTTACACACAATATTGCGGATGGAGGGGAAGGTTCTAGCATGTCAGGCATGTATCAATCACAGGTTCCTCAGTCAGTTTCAAATATGTTAGTTAGGCCTCCGACATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAGAATTGA
Protein sequence

>Msa0607920

MGTQPHQSSVDEEDEELMGCGTTISGQSGSTSRSAGLPSSRSEQTTGTAAGDNAALKLNHLDIHDDDAASQAVVATKKKKRRAVGGDKNGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNGGLSPDQQQYDEKNIRRRVYDALNVLMAMNIISKDKKEIQWKGLPRTSLSDIEELKTQRLGLRSRIERKAAYLQELEQQFLFANRFYYCYKFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMDFGGGERPQSDNVTHNIADGGEGSSMSGMYQSQVPQSVSNMLVRPPTSPPLPGILKARVKQEN*