Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608100 | XP_024638164.1 | 91.715 | 519 | 11 | 2 | 37 | 549 | 1 | 493 | 0.0 | 966 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608100 | sp|Q84T61|HSFA1_ORYSJ | 46.717 | 533 | 207 | 19 | 39 | 546 | 25 | 505 | 4.77e-133 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0608100 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608100 | MtrunA17_Chr4g0039891 | 91.715 | 519 | 11 | 2 | 37 | 549 | 1 | 493 | 0.0 | 966 |
| Msa0608100 | MtrunA17_Chr5g0410881 | 43.633 | 534 | 201 | 17 | 47 | 545 | 31 | 499 | 1.45e-118 | 359 |
| Msa0608100 | MtrunA17_Chr7g0260331 | 45.185 | 270 | 114 | 4 | 15 | 279 | 11 | 251 | 3.64e-66 | 219 |
| Msa0608100 | MtrunA17_Chr3g0135831 | 47.791 | 249 | 92 | 4 | 47 | 295 | 45 | 255 | 1.09e-65 | 218 |
| Msa0608100 | MtrunA17_Chr1g0204741 | 48.729 | 236 | 84 | 5 | 47 | 279 | 39 | 240 | 2.12e-61 | 205 |
| Msa0608100 | MtrunA17_Chr1g0185131 | 45.188 | 239 | 85 | 4 | 48 | 283 | 32 | 227 | 3.13e-55 | 189 |
| Msa0608100 | MtrunA17_Chr8g0392001 | 40.520 | 269 | 126 | 4 | 48 | 315 | 22 | 257 | 2.35e-54 | 188 |
| Msa0608100 | MtrunA17_Chr4g0071051 | 44.355 | 248 | 90 | 6 | 47 | 288 | 100 | 305 | 4.70e-53 | 186 |
| Msa0608100 | MtrunA17_Chr6g0467041 | 37.154 | 253 | 121 | 4 | 28 | 280 | 2 | 216 | 1.14e-46 | 166 |
| Msa0608100 | MtrunA17_Chr8g0378061 | 40.086 | 232 | 101 | 4 | 49 | 280 | 23 | 216 | 9.37e-46 | 167 |
| Msa0608100 | MtrunA17_Chr8g0379701 | 38.389 | 211 | 96 | 3 | 46 | 255 | 10 | 187 | 1.01e-43 | 160 |
| Msa0608100 | MtrunA17_Chr6g0485571 | 39.076 | 238 | 107 | 7 | 43 | 280 | 6 | 205 | 5.61e-43 | 156 |
| Msa0608100 | MtrunA17_Chr2g0330821 | 39.810 | 211 | 91 | 2 | 48 | 258 | 79 | 253 | 2.04e-42 | 155 |
| Msa0608100 | MtrunA17_Chr2g0284481 | 33.953 | 215 | 105 | 3 | 46 | 256 | 13 | 194 | 8.72e-37 | 140 |
| Msa0608100 | MtrunA17_Chr1g0179311 | 42.286 | 175 | 81 | 5 | 136 | 307 | 16 | 173 | 4.22e-34 | 132 |
| Msa0608100 | MtrunA17_Chr5g0397881 | 44.681 | 141 | 47 | 2 | 25 | 165 | 6 | 115 | 3.09e-32 | 127 |
| Msa0608100 | MtrunA17_Chr3g0134031 | 36.818 | 220 | 64 | 5 | 48 | 218 | 24 | 217 | 1.10e-31 | 126 |
| Msa0608100 | MtrunA17_Chr6g0472421 | 49.153 | 118 | 34 | 1 | 48 | 165 | 33 | 124 | 4.68e-30 | 120 |
| Msa0608100 | MtrunA17_Chr5g0402291 | 35.111 | 225 | 88 | 5 | 48 | 240 | 9 | 207 | 2.62e-29 | 117 |
| Msa0608100 | MtrunA17_Chr1g0203601 | 45.763 | 118 | 38 | 1 | 48 | 165 | 18 | 109 | 2.64e-28 | 114 |
| Msa0608100 | MtrunA17_Chr8g0375041 | 37.569 | 181 | 77 | 3 | 48 | 219 | 9 | 162 | 2.98e-28 | 113 |
| Msa0608100 | MtrunA17_Chr5g0441531 | 46.218 | 119 | 38 | 1 | 48 | 166 | 25 | 117 | 7.77e-27 | 109 |
| Msa0608100 | MtrunA17_Chr7g0257331 | 35.795 | 176 | 82 | 3 | 48 | 219 | 22 | 170 | 9.87e-24 | 100 |
| Msa0608100 | MtrunA17_Chr4g0047421 | 41.463 | 123 | 42 | 2 | 48 | 166 | 33 | 129 | 3.98e-23 | 97.8 |
| Msa0608100 | MtrunA17_Chr1g0179321 | 62.903 | 62 | 23 | 0 | 46 | 107 | 47 | 108 | 4.53e-22 | 91.3 |
| Msa0608100 | MtrunA17_Chr2g0330841 | 34.177 | 158 | 93 | 2 | 123 | 280 | 30 | 176 | 6.36e-21 | 95.1 |
| Msa0608100 | MtrunA17_Chr4g0023771 | 58.462 | 65 | 26 | 1 | 46 | 109 | 13 | 77 | 1.07e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608100 | AT5G16820.1 | 46.109 | 514 | 203 | 14 | 46 | 545 | 25 | 478 | 3.23e-126 | 379 |
| Msa0608100 | AT5G16820.2 | 46.109 | 514 | 203 | 14 | 46 | 545 | 25 | 478 | 3.23e-126 | 379 |
| Msa0608100 | AT3G02990.1 | 44.910 | 501 | 219 | 9 | 46 | 545 | 21 | 465 | 2.49e-118 | 358 |
| Msa0608100 | AT1G32330.2 | 42.582 | 519 | 217 | 16 | 39 | 545 | 28 | 477 | 3.44e-109 | 335 |
| Msa0608100 | AT1G32330.1 | 42.582 | 519 | 217 | 16 | 39 | 545 | 28 | 477 | 4.98e-109 | 334 |
| Msa0608100 | AT4G17750.1 | 40.561 | 535 | 200 | 17 | 42 | 545 | 46 | 493 | 3.46e-102 | 317 |
| Msa0608100 | AT2G26150.1 | 50.847 | 236 | 82 | 3 | 47 | 280 | 43 | 246 | 4.26e-72 | 234 |
| Msa0608100 | AT2G26150.4 | 50.847 | 236 | 82 | 3 | 47 | 280 | 43 | 246 | 4.26e-72 | 234 |
| Msa0608100 | AT3G22830.1 | 49.573 | 234 | 91 | 2 | 47 | 279 | 60 | 267 | 1.14e-65 | 219 |
| Msa0608100 | AT1G67970.1 | 40.000 | 310 | 133 | 9 | 46 | 348 | 17 | 280 | 1.53e-55 | 191 |
| Msa0608100 | AT5G03720.2 | 38.403 | 263 | 119 | 5 | 46 | 305 | 53 | 275 | 5.88e-53 | 186 |
| Msa0608100 | AT5G03720.1 | 38.403 | 263 | 119 | 5 | 46 | 305 | 53 | 275 | 5.88e-53 | 186 |
| Msa0608100 | AT3G51910.1 | 39.095 | 243 | 97 | 4 | 40 | 278 | 21 | 216 | 4.69e-49 | 171 |
| Msa0608100 | AT4G13980.1 | 37.652 | 247 | 115 | 4 | 49 | 294 | 24 | 232 | 7.60e-48 | 173 |
| Msa0608100 | AT2G26150.3 | 55.782 | 147 | 57 | 2 | 136 | 280 | 51 | 191 | 4.99e-45 | 160 |
| Msa0608100 | AT2G26150.2 | 55.782 | 147 | 57 | 2 | 136 | 280 | 51 | 191 | 4.99e-45 | 160 |
| Msa0608100 | AT3G24520.1 | 37.395 | 238 | 92 | 5 | 45 | 280 | 14 | 196 | 2.92e-44 | 160 |
| Msa0608100 | AT5G43840.1 | 35.206 | 267 | 104 | 7 | 47 | 306 | 16 | 220 | 3.82e-42 | 152 |
| Msa0608100 | AT4G18880.1 | 33.724 | 341 | 174 | 8 | 40 | 377 | 7 | 298 | 1.64e-40 | 151 |
| Msa0608100 | AT5G54070.1 | 35.102 | 245 | 113 | 4 | 45 | 284 | 68 | 271 | 9.97e-40 | 147 |
| Msa0608100 | AT3G63350.1 | 38.009 | 221 | 99 | 3 | 48 | 267 | 28 | 211 | 1.89e-39 | 145 |
| Msa0608100 | AT5G45710.3 | 35.857 | 251 | 113 | 6 | 46 | 294 | 11 | 215 | 1.15e-38 | 145 |
| Msa0608100 | AT5G45710.1 | 35.857 | 251 | 113 | 6 | 46 | 294 | 11 | 215 | 1.15e-38 | 145 |
| Msa0608100 | AT1G46264.1 | 35.556 | 225 | 78 | 4 | 35 | 218 | 21 | 219 | 3.78e-34 | 132 |
| Msa0608100 | AT5G62020.1 | 48.333 | 120 | 36 | 2 | 48 | 167 | 23 | 116 | 2.53e-29 | 118 |
| Msa0608100 | AT4G36990.1 | 42.675 | 157 | 50 | 3 | 37 | 191 | 1 | 119 | 4.63e-29 | 117 |
| Msa0608100 | AT4G11660.1 | 44.915 | 118 | 39 | 1 | 48 | 165 | 59 | 150 | 3.67e-27 | 113 |
| Msa0608100 | AT2G41690.1 | 42.063 | 126 | 47 | 1 | 47 | 172 | 39 | 138 | 3.37e-25 | 104 |
| Msa0608100 | AT4G18870.1 | 31.858 | 113 | 50 | 2 | 49 | 161 | 14 | 99 | 8.86e-14 | 72.4 |
| Msa0608100 | AT4G18870.1 | 28.947 | 114 | 55 | 1 | 48 | 161 | 146 | 233 | 5.33e-12 | 67.4 |
Find 124 sgRNAs with CRISPR-Local
Find 372 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGACAATATGTTGGATTT+TGG | 0.186217 | 4_2:-55104113 | Msa0608100:CDS |
| CATGAATAGTCCGGGCTTTA+TGG | 0.192612 | 4_2:-55104609 | Msa0608100:CDS |
| AGTTCGTCCACCCAAGTTTC+TGG | 0.215057 | 4_2:-55104305 | Msa0608100:CDS |
| GCAACAGATGATGTCCTTTC+TGG | 0.229475 | 4_2:-55104639 | Msa0608100:CDS |
| CAGGAATCAACGATGAATTC+TGG | 0.282845 | 4_2:-55103935 | Msa0608100:CDS |
| TTTAGGCCAAGCCCACTTAC+TGG | 0.290833 | 4_2:-55103903 | Msa0608100:CDS |
| TTGTTGTGTTTGAAATATTT+AGG | 0.323777 | 4_2:+55105725 | None:intergenic |
| AAAGGTAGTTCTCTAGGATA+TGG | 0.328048 | 4_2:-55103864 | Msa0608100:CDS |
| CAACCGAATCGATCGTTTCA+TGG | 0.334490 | 4_2:-55105808 | Msa0608100:CDS |
| AACTGTTCATTTGCAACATC+TGG | 0.343307 | 4_2:+55104411 | None:intergenic |
| GGATGTGATATCAGCTGTTT+TGG | 0.345447 | 4_2:-55104003 | Msa0608100:CDS |
| ATACATGACTGCTCAGAAAT+AGG | 0.345753 | 4_2:+55104260 | None:intergenic |
| TCTTTGCTAATGACAGTTCC+TGG | 0.347370 | 4_2:+55103829 | None:intergenic |
| CTATTGGTCATACAACTTAC+AGG | 0.350342 | 4_2:+55104218 | None:intergenic |
| TGTGTGGAAGTGGGTAAGTT+TGG | 0.353975 | 4_2:-55104803 | Msa0608100:CDS |
| CTGAAGGAACATCGTCAATA+AGG | 0.359998 | 4_2:+55104348 | None:intergenic |
| AATCCCCATAATCCTCTTGA+TGG | 0.368332 | 4_2:-55104488 | Msa0608100:CDS |
| TTGGCGTGCTGTTGTAAATT+CGG | 0.369544 | 4_2:+55104133 | None:intergenic |
| CAGAATTCATCGTTGATTCC+TGG | 0.379940 | 4_2:+55103936 | None:intergenic |
| GGAGACACAGACGAAGTTAA+AGG | 0.386040 | 4_2:-55103882 | Msa0608100:CDS |
| CATTCCTTCCACGAAACTCT+TGG | 0.390343 | 4_2:+55105311 | None:intergenic |
| CCTAAGCAAAACCTACGATA+TGG | 0.391487 | 4_2:-55105843 | Msa0608100:CDS |
| ATATTTAGGCAAGATGTGTT+TGG | 0.394875 | 4_2:+55105739 | None:intergenic |
| CATAAAGCCCGGACTATTCA+TGG | 0.398561 | 4_2:+55104610 | None:intergenic |
| ATTTGTTGAAGAATATCAAT+AGG | 0.401281 | 4_2:-55104895 | Msa0608100:CDS |
| ACGTCCATCAAGAGGATTAT+GGG | 0.405330 | 4_2:+55104484 | None:intergenic |
| CGGTGAGAATGATGAGGAAT+TGG | 0.407069 | 4_2:-55104024 | Msa0608100:CDS |
| CACGTCCATCAAGAGGATTA+TGG | 0.409822 | 4_2:+55104483 | None:intergenic |
| GTGTCTCCAGTAAGTGGGCT+TGG | 0.409905 | 4_2:+55103897 | None:intergenic |
| AACTATCTTCTTCCTGCCCC+TGG | 0.417448 | 4_2:+55104522 | None:intergenic |
| GACGAACTACTGCTATCTAA+TGG | 0.419548 | 4_2:+55104320 | None:intergenic |
| TGGCGTGCTGTTGTAAATTC+GGG | 0.422226 | 4_2:+55104134 | None:intergenic |
| ATCGTTGATTCCTGGAAGCT+TGG | 0.423687 | 4_2:+55103944 | None:intergenic |
| CGCTGGGAATTTGCTCATGA+AGG | 0.426418 | 4_2:-55104938 | Msa0608100:CDS |
| GTGTGGAAGTGGGTAAGTTT+GGG | 0.436120 | 4_2:-55104802 | Msa0608100:CDS |
| AACCGAATCGATCGTTTCAT+GGG | 0.436953 | 4_2:-55105807 | Msa0608100:CDS |
| CAAGATGTGTTTGGAGAAAT+CGG | 0.437903 | 4_2:+55105748 | None:intergenic |
| GTTGCCCAACATTTACCAAT+TGG | 0.441846 | 4_2:+55104687 | None:intergenic |
| AATGAAAATTCCAAGCTTCC+AGG | 0.444171 | 4_2:-55103954 | Msa0608100:CDS |
| GAATGCATCAAGGTTCTTGA+TGG | 0.448987 | 4_2:+55104370 | None:intergenic |
| TGAGCAAATTCCCAGCGGTC+GGG | 0.449587 | 4_2:+55104944 | None:intergenic |
| GATAACCAATTGGTAAATGT+TGG | 0.452224 | 4_2:-55104692 | Msa0608100:CDS |
| CGGAAATCTACTCATGCAAA+TGG | 0.457161 | 4_2:-55104872 | Msa0608100:CDS |
| GGCAAAGGCCATGAATAGTC+CGG | 0.460979 | 4_2:-55104618 | Msa0608100:CDS |
| GGATCGCGAATTATGACAGC+TGG | 0.461443 | 4_2:-55105893 | Msa0608100:CDS |
| GAAGATTCAACAAGAAAAGA+TGG | 0.461849 | 4_2:-55103808 | Msa0608100:CDS |
| AAAGAGGCGGCTCCAGGGGC+AGG | 0.463211 | 4_2:-55104534 | Msa0608100:CDS |
| ATTCATGGCCTTTGCCAGAA+AGG | 0.466404 | 4_2:+55104625 | None:intergenic |
| ATAACCAATTGGTAAATGTT+GGG | 0.467159 | 4_2:-55104691 | Msa0608100:CDS |
| AAAGTGTTACACCAGAAACT+TGG | 0.470921 | 4_2:+55104294 | None:intergenic |
| AGGAATCAACGATGAATTCT+GGG | 0.476706 | 4_2:-55103934 | Msa0608100:CDS |
| TGTTGGGTCATGTGTGGAAG+TGG | 0.480175 | 4_2:-55104813 | Msa0608100:CDS |
| AGCCGCAGAACCCACCTGTT+GGG | 0.484089 | 4_2:-55104829 | Msa0608100:CDS |
| AGGATTATGGGGATTCTTAG+TGG | 0.485126 | 4_2:+55104496 | None:intergenic |
| GAAAGGTTGACCCCGACCGC+TGG | 0.485865 | 4_2:-55104955 | Msa0608100:CDS |
| AAGAGGTTGAAAGACTGAAA+AGG | 0.488568 | 4_2:-55104772 | Msa0608100:CDS |
| GTTCAATTGTCTGACGAAGC+TGG | 0.491130 | 4_2:+55105697 | None:intergenic |
| AGAGGTTGAAAGACTGAAAA+GGG | 0.491243 | 4_2:-55104771 | Msa0608100:CDS |
| ACAATCGACTGATAACCAAT+TGG | 0.498524 | 4_2:-55104702 | Msa0608100:CDS |
| ACCCCATGAAACGATCGATT+CGG | 0.504242 | 4_2:+55105805 | None:intergenic |
| ACTTCCACACATGACCCAAC+AGG | 0.505692 | 4_2:+55104815 | None:intergenic |
| TCGTCTGTGTCTCCAGTAAG+TGG | 0.508093 | 4_2:+55103891 | None:intergenic |
| GAAGTTAAAGGTAGTTCTCT+AGG | 0.508241 | 4_2:-55103870 | Msa0608100:CDS |
| TTCTGGTGTAACACTTTCTG+AGG | 0.510063 | 4_2:-55104288 | Msa0608100:CDS |
| TTGTACCTCAGACATGCTAT+TGG | 0.515237 | 4_2:+55104202 | None:intergenic |
| GTTCCATCTGTTGAGTAAGA+TGG | 0.529932 | 4_2:+55103766 | None:intergenic |
| TAACATTTCCAAGAGTTTCG+TGG | 0.532952 | 4_2:-55105319 | Msa0608100:CDS |
| CAAAATCCAACATATTGTCT+TGG | 0.533590 | 4_2:+55104114 | None:intergenic |
| CAGCCTCATTAATCGAAGGC+TGG | 0.533822 | 4_2:+55104450 | None:intergenic |
| GATGATGTCCTTTCTGGCAA+AGG | 0.536418 | 4_2:-55104633 | Msa0608100:CDS |
| GTACCAGCCTTCGATTAATG+AGG | 0.544722 | 4_2:-55104453 | Msa0608100:CDS |
| CGTCAATAAGGAATGCATCA+AGG | 0.545272 | 4_2:+55104360 | None:intergenic |
| AAAGGTTGACCCCGACCGCT+GGG | 0.545860 | 4_2:-55104954 | Msa0608100:CDS |
| ATGAGCAAATTCCCAGCGGT+CGG | 0.546545 | 4_2:+55104943 | None:intergenic |
| GAGCAAATTCCCAGCGGTCG+GGG | 0.548051 | 4_2:+55104945 | None:intergenic |
| CAGCAATCATCAGAGAGTAA+AGG | 0.553766 | 4_2:-55105914 | Msa0608100:CDS |
| GAACAGTGATGGTGAAGTGA+AGG | 0.555884 | 4_2:+55105991 | None:intergenic |
| AAGCCGCAGAACCCACCTGT+TGG | 0.557194 | 4_2:-55104830 | Msa0608100:CDS |
| TAAGTTTGGGCTTGATGAAG+AGG | 0.559114 | 4_2:-55104789 | Msa0608100:CDS |
| GATGATGAAGATGACGAAGA+GGG | 0.561141 | 4_2:+55105941 | None:intergenic |
| GCAAAGGCCATGAATAGTCC+GGG | 0.565582 | 4_2:-55104617 | Msa0608100:CDS |
| AATGAACAGTTCTGCAAGGG+TGG | 0.569475 | 4_2:-55104399 | Msa0608100:CDS |
| ATGAAGATGACGAAGAGGGA+AGG | 0.572394 | 4_2:+55105945 | None:intergenic |
| GGACAAGAATGTTCTCATGC+AGG | 0.575434 | 4_2:-55104750 | Msa0608100:CDS |
| GGACCATCTTACTCAACAGA+TGG | 0.577724 | 4_2:-55103769 | Msa0608100:CDS |
| AAGTGTTACACCAGAAACTT+GGG | 0.578836 | 4_2:+55104295 | None:intergenic |
| GAAAATTGAGCCATAAAGCC+CGG | 0.581687 | 4_2:+55104599 | None:intergenic |
| CTATCTAATGGAATGGCTGA+AGG | 0.583304 | 4_2:+55104332 | None:intergenic |
| ATTTCCAAGAGTTTCGTGGA+AGG | 0.584043 | 4_2:-55105315 | Msa0608100:CDS |
| TGATGATGAAGATGACGAAG+AGG | 0.591083 | 4_2:+55105940 | None:intergenic |
| TCCACACATGACCCAACAGG+TGG | 0.591825 | 4_2:+55104818 | None:intergenic |
| TTTGCAGCCTCATTAATCGA+AGG | 0.592100 | 4_2:+55104446 | None:intergenic |
| ATATGGTTTGACTAAAGACC+AGG | 0.592754 | 4_2:-55103847 | Msa0608100:CDS |
| GACCCAACAGGTGGGTTCTG+CGG | 0.593008 | 4_2:+55104827 | None:intergenic |
| CGTCTGTGTCTCCAGTAAGT+GGG | 0.594211 | 4_2:+55103892 | None:intergenic |
| AGGTAAGAAAGAAAGTTTGA+CGG | 0.597068 | 4_2:+55105965 | None:intergenic |
| ACTACTGCTATCTAATGGAA+TGG | 0.597584 | 4_2:+55104325 | None:intergenic |
| ACACAGTCAGTCAACACTGC+AGG | 0.598895 | 4_2:+55104173 | None:intergenic |
| TGTAAATTCGGGAAATTCAG+CGG | 0.604212 | 4_2:+55104145 | None:intergenic |
| AGTAATAGACATGTTACCGC+AGG | 0.605872 | 4_2:-55104560 | Msa0608100:CDS |
| TGCATCAAGGTTCTTGATGG+AGG | 0.607948 | 4_2:+55104373 | None:intergenic |
| AGAGTCATCAACCATATCGT+AGG | 0.608336 | 4_2:+55105832 | None:intergenic |
| AGCACGCCAAGACAATATGT+TGG | 0.609538 | 4_2:-55104120 | Msa0608100:CDS |
| TGGGCAACGTGTGCAAGTGA+TGG | 0.618938 | 4_2:-55104672 | Msa0608100:CDS |
| TTAACAACACGTCCATCAAG+AGG | 0.623081 | 4_2:+55104476 | None:intergenic |
| CATGACTGCTCAGAAATAGG+TGG | 0.638723 | 4_2:+55104263 | None:intergenic |
| CCCACCTGTTGGGTCATGTG+TGG | 0.640259 | 4_2:-55104819 | Msa0608100:CDS |
| TGTTGAAGAATATCAATAGG+CGG | 0.640695 | 4_2:-55104892 | Msa0608100:CDS |
| GATCGCGAATTATGACAGCT+GGG | 0.642062 | 4_2:-55105892 | Msa0608100:CDS |
| TTTGACGGTAAGAACAGTGA+TGG | 0.652352 | 4_2:+55105980 | None:intergenic |
| CGTCCATCAAGAGGATTATG+GGG | 0.652520 | 4_2:+55104485 | None:intergenic |
| TATGACCAATAGCATGTCTG+AGG | 0.654015 | 4_2:-55104207 | Msa0608100:CDS |
| TGCAAATGAACAGTTCTGCA+AGG | 0.655638 | 4_2:-55104403 | Msa0608100:CDS |
| GTTGGGTCATGTGTGGAAGT+GGG | 0.670827 | 4_2:-55104812 | Msa0608100:CDS |
| ACCGAATCGATCGTTTCATG+GGG | 0.677166 | 4_2:-55105806 | Msa0608100:CDS |
| GCAAATGAACAGTTCTGCAA+GGG | 0.681864 | 4_2:-55104402 | Msa0608100:CDS |
| GATGGATAAGATACAGCACA+TGG | 0.683473 | 4_2:-55103790 | Msa0608100:CDS |
| CCACACATGACCCAACAGGT+GGG | 0.694523 | 4_2:+55104819 | None:intergenic |
| TGTTACACCAGAAACTTGGG+TGG | 0.706092 | 4_2:+55104298 | None:intergenic |
| GTCTGTCGGTGAGAATGATG+AGG | 0.708346 | 4_2:-55104030 | Msa0608100:CDS |
| TGTTAGAACTGAATTCTACA+CGG | 0.709397 | 4_2:-55105256 | Msa0608100:intron |
| GGTGGAATTGAAAACGACGA+AGG | 0.715764 | 4_2:+55105769 | None:intergenic |
| GATGTGTTTGGAGAAATCGG+TGG | 0.725221 | 4_2:+55105751 | None:intergenic |
| CTTCATGAGCAAATTCCCAG+CGG | 0.771734 | 4_2:+55104939 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTAGAAAATATTCAT+CGG | + | chr4_2:55104375-55104394 | None:intergenic | 15.0% |
| !! | AATTCTTAGAAAATATTCAT+CGG | + | chr4_2:55104375-55104394 | None:intergenic | 15.0% |
| !!! | TTGTTGTGTTTGAAATATTT+AGG | + | chr4_2:55104001-55104020 | None:intergenic | 20.0% |
| !!! | TTTTTCACCTTTTCTTAATT+AGG | - | chr4_2:55104072-55104091 | Msa0608100:CDS | 20.0% |
| !!! | TTTTCACCTTTTCTTAATTA+GGG | - | chr4_2:55104073-55104092 | Msa0608100:CDS | 20.0% |
| !!! | GATGAATATTTTCTAAGAAT+TGG | - | chr4_2:55104374-55104393 | Msa0608100:CDS | 20.0% |
| !! | ATAGTATTAAAAAAGCAAGA+AGG | + | chr4_2:55104644-55104663 | None:intergenic | 20.0% |
| !! | TACTATACATTTAATAATGC+TGG | - | chr4_2:55104658-55104677 | Msa0608100:CDS | 20.0% |
| !!! | ATTTGTTGAAGAATATCAAT+AGG | - | chr4_2:55104828-55104847 | Msa0608100:CDS | 20.0% |
| !!! | TTGTTGTGTTTGAAATATTT+AGG | + | chr4_2:55104001-55104020 | None:intergenic | 20.0% |
| !!! | TTTTTCACCTTTTCTTAATT+AGG | - | chr4_2:55104072-55104091 | Msa0608100:CDS | 20.0% |
| !!! | TTTTCACCTTTTCTTAATTA+GGG | - | chr4_2:55104073-55104092 | Msa0608100:CDS | 20.0% |
| !!! | GATGAATATTTTCTAAGAAT+TGG | - | chr4_2:55104374-55104393 | Msa0608100:CDS | 20.0% |
| !! | ATAGTATTAAAAAAGCAAGA+AGG | + | chr4_2:55104644-55104663 | None:intergenic | 20.0% |
| !! | TACTATACATTTAATAATGC+TGG | - | chr4_2:55104658-55104677 | Msa0608100:CDS | 20.0% |
| !!! | ATTTGTTGAAGAATATCAAT+AGG | - | chr4_2:55104828-55104847 | Msa0608100:CDS | 20.0% |
| ! | GTAAAACCCTAATTAAGAAA+AGG | + | chr4_2:55104082-55104101 | None:intergenic | 25.0% |
| ! | GTTCAGATCATATTAACTTA+TGG | - | chr4_2:55104115-55104134 | Msa0608100:CDS | 25.0% |
| !! | TTATGGACGAAGATTTTATT+AGG | - | chr4_2:55104132-55104151 | Msa0608100:CDS | 25.0% |
| !! | CTTAATTGTAATTTGGTGAT+TGG | - | chr4_2:55104220-55104239 | Msa0608100:CDS | 25.0% |
| ! | GTAATTAGAGAAGTTACATT+CGG | - | chr4_2:55104259-55104278 | Msa0608100:CDS | 25.0% |
| ! | TAATTAGAGAAGTTACATTC+GGG | - | chr4_2:55104260-55104279 | Msa0608100:CDS | 25.0% |
| !!! | ATTTTCTAAGAATTGGATGT+AGG | - | chr4_2:55104381-55104400 | Msa0608100:CDS | 25.0% |
| !! | TTAAGTCGTAATAGGATTTT+AGG | - | chr4_2:55104511-55104530 | Msa0608100:CDS | 25.0% |
| !!! | TTTTAGGTTATGGTTAAGAT+AGG | - | chr4_2:55104527-55104546 | Msa0608100:CDS | 25.0% |
| !! | TTGTATACTTTTAATCATGC+TGG | - | chr4_2:55104693-55104712 | Msa0608100:CDS | 25.0% |
| ! | TGCTTGTGAATAAAAAAGAT+AGG | + | chr4_2:55104740-55104759 | None:intergenic | 25.0% |
| !!! | TATCTTTTTTATTCACAAGC+AGG | - | chr4_2:55104739-55104758 | Msa0608100:CDS | 25.0% |
| !!! | ATCTTTTTTATTCACAAGCA+GGG | - | chr4_2:55104740-55104759 | Msa0608100:CDS | 25.0% |
| ! | ATAACCAATTGGTAAATGTT+GGG | - | chr4_2:55105032-55105051 | Msa0608100:intron | 25.0% |
| !! | AATCCTGATCAAAATTTTGT+GGG | - | chr4_2:55105670-55105689 | Msa0608100:intron | 25.0% |
| !!! | AATTCTGGGAACAATTTTTT+AGG | - | chr4_2:55105803-55105822 | Msa0608100:CDS | 25.0% |
| ! | GTAAAACCCTAATTAAGAAA+AGG | + | chr4_2:55104082-55104101 | None:intergenic | 25.0% |
| ! | GTTCAGATCATATTAACTTA+TGG | - | chr4_2:55104115-55104134 | Msa0608100:CDS | 25.0% |
| !! | TTATGGACGAAGATTTTATT+AGG | - | chr4_2:55104132-55104151 | Msa0608100:CDS | 25.0% |
| !! | CTTAATTGTAATTTGGTGAT+TGG | - | chr4_2:55104220-55104239 | Msa0608100:CDS | 25.0% |
| ! | GTAATTAGAGAAGTTACATT+CGG | - | chr4_2:55104259-55104278 | Msa0608100:CDS | 25.0% |
| ! | TAATTAGAGAAGTTACATTC+GGG | - | chr4_2:55104260-55104279 | Msa0608100:CDS | 25.0% |
| !!! | ATTTTCTAAGAATTGGATGT+AGG | - | chr4_2:55104381-55104400 | Msa0608100:CDS | 25.0% |
| !! | TTAAGTCGTAATAGGATTTT+AGG | - | chr4_2:55104511-55104530 | Msa0608100:CDS | 25.0% |
| !!! | TTTTAGGTTATGGTTAAGAT+AGG | - | chr4_2:55104527-55104546 | Msa0608100:CDS | 25.0% |
| !! | TTGTATACTTTTAATCATGC+TGG | - | chr4_2:55104693-55104712 | Msa0608100:CDS | 25.0% |
| ! | TGCTTGTGAATAAAAAAGAT+AGG | + | chr4_2:55104740-55104759 | None:intergenic | 25.0% |
| !!! | TATCTTTTTTATTCACAAGC+AGG | - | chr4_2:55104739-55104758 | Msa0608100:CDS | 25.0% |
| !!! | ATCTTTTTTATTCACAAGCA+GGG | - | chr4_2:55104740-55104759 | Msa0608100:CDS | 25.0% |
| ! | ATAACCAATTGGTAAATGTT+GGG | - | chr4_2:55105032-55105051 | Msa0608100:intron | 25.0% |
| !! | AATCCTGATCAAAATTTTGT+GGG | - | chr4_2:55105670-55105689 | Msa0608100:intron | 25.0% |
| !!! | AATTCTGGGAACAATTTTTT+AGG | - | chr4_2:55105803-55105822 | Msa0608100:CDS | 25.0% |
| AGGTAAGAAAGAAAGTTTGA+CGG | + | chr4_2:55103761-55103780 | None:intergenic | 30.0% | |
| ATATTTAGGCAAGATGTGTT+TGG | + | chr4_2:55103987-55104006 | None:intergenic | 30.0% | |
| AGTAAAGTAAGAACATACGT+AGG | + | chr4_2:55104053-55104072 | None:intergenic | 30.0% | |
| TGTTAGAACTGAATTCTACA+CGG | - | chr4_2:55104467-55104486 | Msa0608100:CDS | 30.0% | |
| !!! | CGTAATAGGATTTTAGGTTA+TGG | - | chr4_2:55104517-55104536 | Msa0608100:CDS | 30.0% |
| ! | TTGCTCATGAAGGATTTTTA+AGG | - | chr4_2:55104795-55104814 | Msa0608100:CDS | 30.0% |
| ! | TGCTCATGAAGGATTTTTAA+GGG | - | chr4_2:55104796-55104815 | Msa0608100:CDS | 30.0% |
| TGTTGAAGAATATCAATAGG+CGG | - | chr4_2:55104831-55104850 | Msa0608100:CDS | 30.0% | |
| GATAACCAATTGGTAAATGT+TGG | - | chr4_2:55105031-55105050 | Msa0608100:intron | 30.0% | |
| CAAAATCCAACATATTGTCT+TGG | + | chr4_2:55105612-55105631 | None:intergenic | 30.0% | |
| ! | CAAGACAATATGTTGGATTT+TGG | - | chr4_2:55105610-55105629 | Msa0608100:intron | 30.0% |
| ! | GAATCCTGATCAAAATTTTG+TGG | - | chr4_2:55105669-55105688 | Msa0608100:intron | 30.0% |
| ! | ATCCTGATCAAAATTTTGTG+GGG | - | chr4_2:55105671-55105690 | Msa0608100:intron | 30.0% |
| GAAGATTCAACAAGAAAAGA+TGG | - | chr4_2:55105915-55105934 | Msa0608100:CDS | 30.0% | |
| AGGTAAGAAAGAAAGTTTGA+CGG | + | chr4_2:55103761-55103780 | None:intergenic | 30.0% | |
| ATATTTAGGCAAGATGTGTT+TGG | + | chr4_2:55103987-55104006 | None:intergenic | 30.0% | |
| AGTAAAGTAAGAACATACGT+AGG | + | chr4_2:55104053-55104072 | None:intergenic | 30.0% | |
| TGTTAGAACTGAATTCTACA+CGG | - | chr4_2:55104467-55104486 | Msa0608100:CDS | 30.0% | |
| !!! | CGTAATAGGATTTTAGGTTA+TGG | - | chr4_2:55104517-55104536 | Msa0608100:CDS | 30.0% |
| ! | TTGCTCATGAAGGATTTTTA+AGG | - | chr4_2:55104795-55104814 | Msa0608100:CDS | 30.0% |
| ! | TGCTCATGAAGGATTTTTAA+GGG | - | chr4_2:55104796-55104815 | Msa0608100:CDS | 30.0% |
| TGTTGAAGAATATCAATAGG+CGG | - | chr4_2:55104831-55104850 | Msa0608100:CDS | 30.0% | |
| GATAACCAATTGGTAAATGT+TGG | - | chr4_2:55105031-55105050 | Msa0608100:intron | 30.0% | |
| CAAAATCCAACATATTGTCT+TGG | + | chr4_2:55105612-55105631 | None:intergenic | 30.0% | |
| ! | CAAGACAATATGTTGGATTT+TGG | - | chr4_2:55105610-55105629 | Msa0608100:intron | 30.0% |
| ! | GAATCCTGATCAAAATTTTG+TGG | - | chr4_2:55105669-55105688 | Msa0608100:intron | 30.0% |
| ! | ATCCTGATCAAAATTTTGTG+GGG | - | chr4_2:55105671-55105690 | Msa0608100:intron | 30.0% |
| GAAGATTCAACAAGAAAAGA+TGG | - | chr4_2:55105915-55105934 | Msa0608100:CDS | 30.0% | |
| CAAGATGTGTTTGGAGAAAT+CGG | + | chr4_2:55103978-55103997 | None:intergenic | 35.0% | |
| GAACGCGCTTAATTGTAATT+TGG | - | chr4_2:55104213-55104232 | Msa0608100:CDS | 35.0% | |
| ! | TTGTAATTTGGTGATTGGAG+AGG | - | chr4_2:55104225-55104244 | Msa0608100:CDS | 35.0% |
| ! | TGTAATTTGGTGATTGGAGA+GGG | - | chr4_2:55104226-55104245 | Msa0608100:CDS | 35.0% |
| TAACATTTCCAAGAGTTTCG+TGG | - | chr4_2:55104404-55104423 | Msa0608100:CDS | 35.0% | |
| CATTTGCAAACTGCAAAAAG+TGG | + | chr4_2:55104449-55104468 | None:intergenic | 35.0% | |
| GACTGCAATTAAGTCGTAAT+AGG | - | chr4_2:55104503-55104522 | Msa0608100:CDS | 35.0% | |
| TAACTAATGAATCCCCAAGA+GGG | + | chr4_2:55104555-55104574 | None:intergenic | 35.0% | |
| TAAAAAAGCAAGAAGGAGAG+AGG | + | chr4_2:55104637-55104656 | None:intergenic | 35.0% | |
| !! | GCTCATGAAGGATTTTTAAG+GGG | - | chr4_2:55104797-55104816 | Msa0608100:CDS | 35.0% |
| AAGAGGTTGAAAGACTGAAA+AGG | - | chr4_2:55104951-55104970 | Msa0608100:CDS | 35.0% | |
| AGAGGTTGAAAGACTGAAAA+GGG | - | chr4_2:55104952-55104971 | Msa0608100:CDS | 35.0% | |
| ACAATCGACTGATAACCAAT+TGG | - | chr4_2:55105021-55105040 | Msa0608100:intron | 35.0% | |
| AACTGTTCATTTGCAACATC+TGG | + | chr4_2:55105315-55105334 | None:intergenic | 35.0% | |
| ACTACTGCTATCTAATGGAA+TGG | + | chr4_2:55105401-55105420 | None:intergenic | 35.0% | |
| AAGTGTTACACCAGAAACTT+GGG | + | chr4_2:55105431-55105450 | None:intergenic | 35.0% | |
| ! | AAAGTGTTACACCAGAAACT+TGG | + | chr4_2:55105432-55105451 | None:intergenic | 35.0% |
| ATACATGACTGCTCAGAAAT+AGG | + | chr4_2:55105466-55105485 | None:intergenic | 35.0% | |
| CTATTGGTCATACAACTTAC+AGG | + | chr4_2:55105508-55105527 | None:intergenic | 35.0% | |
| TGTAAATTCGGGAAATTCAG+CGG | + | chr4_2:55105581-55105600 | None:intergenic | 35.0% | |
| !! | TTGGATTTTGGTGAAGTTCA+AGG | - | chr4_2:55105622-55105641 | Msa0608100:intron | 35.0% |
| AATGAAAATTCCAAGCTTCC+AGG | - | chr4_2:55105769-55105788 | Msa0608100:CDS | 35.0% | |
| AGGAATCAACGATGAATTCT+GGG | - | chr4_2:55105789-55105808 | Msa0608100:CDS | 35.0% | |
| GAAGTTAAAGGTAGTTCTCT+AGG | - | chr4_2:55105853-55105872 | Msa0608100:CDS | 35.0% | |
| !! | AAAGGTAGTTCTCTAGGATA+TGG | - | chr4_2:55105859-55105878 | Msa0608100:CDS | 35.0% |
| ATATGGTTTGACTAAAGACC+AGG | - | chr4_2:55105876-55105895 | Msa0608100:CDS | 35.0% | |
| CAAGATGTGTTTGGAGAAAT+CGG | + | chr4_2:55103978-55103997 | None:intergenic | 35.0% | |
| GAACGCGCTTAATTGTAATT+TGG | - | chr4_2:55104213-55104232 | Msa0608100:CDS | 35.0% | |
| ! | TTGTAATTTGGTGATTGGAG+AGG | - | chr4_2:55104225-55104244 | Msa0608100:CDS | 35.0% |
| ! | TGTAATTTGGTGATTGGAGA+GGG | - | chr4_2:55104226-55104245 | Msa0608100:CDS | 35.0% |
| TAACATTTCCAAGAGTTTCG+TGG | - | chr4_2:55104404-55104423 | Msa0608100:CDS | 35.0% | |
| CATTTGCAAACTGCAAAAAG+TGG | + | chr4_2:55104449-55104468 | None:intergenic | 35.0% | |
| GACTGCAATTAAGTCGTAAT+AGG | - | chr4_2:55104503-55104522 | Msa0608100:CDS | 35.0% | |
| TAACTAATGAATCCCCAAGA+GGG | + | chr4_2:55104555-55104574 | None:intergenic | 35.0% | |
| TAAAAAAGCAAGAAGGAGAG+AGG | + | chr4_2:55104637-55104656 | None:intergenic | 35.0% | |
| !! | GCTCATGAAGGATTTTTAAG+GGG | - | chr4_2:55104797-55104816 | Msa0608100:CDS | 35.0% |
| AAGAGGTTGAAAGACTGAAA+AGG | - | chr4_2:55104951-55104970 | Msa0608100:CDS | 35.0% | |
| AGAGGTTGAAAGACTGAAAA+GGG | - | chr4_2:55104952-55104971 | Msa0608100:CDS | 35.0% | |
| ACAATCGACTGATAACCAAT+TGG | - | chr4_2:55105021-55105040 | Msa0608100:intron | 35.0% | |
| AACTGTTCATTTGCAACATC+TGG | + | chr4_2:55105315-55105334 | None:intergenic | 35.0% | |
| ACTACTGCTATCTAATGGAA+TGG | + | chr4_2:55105401-55105420 | None:intergenic | 35.0% | |
| AAGTGTTACACCAGAAACTT+GGG | + | chr4_2:55105431-55105450 | None:intergenic | 35.0% | |
| ! | AAAGTGTTACACCAGAAACT+TGG | + | chr4_2:55105432-55105451 | None:intergenic | 35.0% |
| ATACATGACTGCTCAGAAAT+AGG | + | chr4_2:55105466-55105485 | None:intergenic | 35.0% | |
| CTATTGGTCATACAACTTAC+AGG | + | chr4_2:55105508-55105527 | None:intergenic | 35.0% | |
| TGTAAATTCGGGAAATTCAG+CGG | + | chr4_2:55105581-55105600 | None:intergenic | 35.0% | |
| !! | TTGGATTTTGGTGAAGTTCA+AGG | - | chr4_2:55105622-55105641 | Msa0608100:intron | 35.0% |
| AATGAAAATTCCAAGCTTCC+AGG | - | chr4_2:55105769-55105788 | Msa0608100:CDS | 35.0% | |
| AGGAATCAACGATGAATTCT+GGG | - | chr4_2:55105789-55105808 | Msa0608100:CDS | 35.0% | |
| GAAGTTAAAGGTAGTTCTCT+AGG | - | chr4_2:55105853-55105872 | Msa0608100:CDS | 35.0% | |
| !! | AAAGGTAGTTCTCTAGGATA+TGG | - | chr4_2:55105859-55105878 | Msa0608100:CDS | 35.0% |
| ATATGGTTTGACTAAAGACC+AGG | - | chr4_2:55105876-55105895 | Msa0608100:CDS | 35.0% | |
| TTTGACGGTAAGAACAGTGA+TGG | + | chr4_2:55103746-55103765 | None:intergenic | 40.0% | |
| GATGATGAAGATGACGAAGA+GGG | + | chr4_2:55103785-55103804 | None:intergenic | 40.0% | |
| ! | TGATGATGAAGATGACGAAG+AGG | + | chr4_2:55103786-55103805 | None:intergenic | 40.0% |
| CAGCAATCATCAGAGAGTAA+AGG | - | chr4_2:55103809-55103828 | Msa0608100:CDS | 40.0% | |
| ! | TCGTAGGTTTTGCTTAGGAA+CGG | + | chr4_2:55103878-55103897 | None:intergenic | 40.0% |
| ! | CCATATCGTAGGTTTTGCTT+AGG | + | chr4_2:55103883-55103902 | None:intergenic | 40.0% |
| CCTAAGCAAAACCTACGATA+TGG | - | chr4_2:55103880-55103899 | Msa0608100:CDS | 40.0% | |
| AGAGTCATCAACCATATCGT+AGG | + | chr4_2:55103894-55103913 | None:intergenic | 40.0% | |
| AACCGAATCGATCGTTTCAT+GGG | - | chr4_2:55103916-55103935 | Msa0608100:CDS | 40.0% | |
| GTTACATTCGGGATGCATTT+CGG | - | chr4_2:55104271-55104290 | Msa0608100:CDS | 40.0% | |
| ACAGTAACAGTAACACTAGC+AGG | + | chr4_2:55104325-55104344 | None:intergenic | 40.0% | |
| ! | TGCTAGTGTTACTGTTACTG+TGG | - | chr4_2:55104324-55104343 | Msa0608100:CDS | 40.0% |
| ATATTCATCGGTACACCGAA+CGG | + | chr4_2:55104363-55104382 | None:intergenic | 40.0% | |
| ATTTCCAAGAGTTTCGTGGA+AGG | - | chr4_2:55104408-55104427 | Msa0608100:CDS | 40.0% | |
| GTTAAGATAGGTACCCTCTT+GGG | - | chr4_2:55104539-55104558 | Msa0608100:CDS | 40.0% | |
| TTAAGATAGGTACCCTCTTG+GGG | - | chr4_2:55104540-55104559 | Msa0608100:CDS | 40.0% | |
| CTAACTAATGAATCCCCAAG+AGG | + | chr4_2:55104556-55104575 | None:intergenic | 40.0% | |
| CAAAGTCGAGATACTTGTTC+TGG | - | chr4_2:55104592-55104611 | Msa0608100:CDS | 40.0% | |
| !!! | TCACAAGCAGGGTTTTAGAA+AGG | - | chr4_2:55104751-55104770 | Msa0608100:CDS | 40.0% |
| CGGAAATCTACTCATGCAAA+TGG | - | chr4_2:55104851-55104870 | Msa0608100:CDS | 40.0% | |
| TAAGTTTGGGCTTGATGAAG+AGG | - | chr4_2:55104934-55104953 | Msa0608100:CDS | 40.0% | |
| GTTGCCCAACATTTACCAAT+TGG | + | chr4_2:55105039-55105058 | None:intergenic | 40.0% | |
| GAAAATTGAGCCATAAAGCC+CGG | + | chr4_2:55105127-55105146 | None:intergenic | 40.0% | |
| AGTAATAGACATGTTACCGC+AGG | - | chr4_2:55105163-55105182 | Msa0608100:intron | 40.0% | |
| ATGTTACCGCAGGTAAAAAG+AGG | - | chr4_2:55105173-55105192 | Msa0608100:intron | 40.0% | |
| AGGATTATGGGGATTCTTAG+TGG | + | chr4_2:55105230-55105249 | None:intergenic | 40.0% | |
| AATCCCCATAATCCTCTTGA+TGG | - | chr4_2:55105235-55105254 | Msa0608100:intron | 40.0% | |
| ACGTCCATCAAGAGGATTAT+GGG | + | chr4_2:55105242-55105261 | None:intergenic | 40.0% | |
| TTAACAACACGTCCATCAAG+AGG | + | chr4_2:55105250-55105269 | None:intergenic | 40.0% | |
| TTTGCAGCCTCATTAATCGA+AGG | + | chr4_2:55105280-55105299 | None:intergenic | 40.0% | |
| TGCAAATGAACAGTTCTGCA+AGG | - | chr4_2:55105320-55105339 | Msa0608100:CDS | 40.0% | |
| GCAAATGAACAGTTCTGCAA+GGG | - | chr4_2:55105321-55105340 | Msa0608100:CDS | 40.0% | |
| GAATGCATCAAGGTTCTTGA+TGG | + | chr4_2:55105356-55105375 | None:intergenic | 40.0% | |
| CGTCAATAAGGAATGCATCA+AGG | + | chr4_2:55105366-55105385 | None:intergenic | 40.0% | |
| CTGAAGGAACATCGTCAATA+AGG | + | chr4_2:55105378-55105397 | None:intergenic | 40.0% | |
| CTATCTAATGGAATGGCTGA+AGG | + | chr4_2:55105394-55105413 | None:intergenic | 40.0% | |
| GACGAACTACTGCTATCTAA+TGG | + | chr4_2:55105406-55105425 | None:intergenic | 40.0% | |
| TTCTGGTGTAACACTTTCTG+AGG | - | chr4_2:55105435-55105454 | Msa0608100:intron | 40.0% | |
| TATGACCAATAGCATGTCTG+AGG | - | chr4_2:55105516-55105535 | Msa0608100:intron | 40.0% | |
| TTGTACCTCAGACATGCTAT+TGG | + | chr4_2:55105524-55105543 | None:intergenic | 40.0% | |
| ! | TTGGCGTGCTGTTGTAAATT+CGG | + | chr4_2:55105593-55105612 | None:intergenic | 40.0% |
| ! | TTTTGGTGAAGTTCAAGGAC+TGG | - | chr4_2:55105627-55105646 | Msa0608100:intron | 40.0% |
| !! | GACCCCACAAAATTTTGATC+AGG | + | chr4_2:55105676-55105695 | None:intergenic | 40.0% |
| ! | CAAAATTTTGTGGGGTCTGT+CGG | - | chr4_2:55105679-55105698 | Msa0608100:intron | 40.0% |
| ! | GGATGTGATATCAGCTGTTT+TGG | - | chr4_2:55105720-55105739 | Msa0608100:CDS | 40.0% |
| !! | CAGAATTCATCGTTGATTCC+TGG | + | chr4_2:55105790-55105809 | None:intergenic | 40.0% |
| CAGGAATCAACGATGAATTC+TGG | - | chr4_2:55105788-55105807 | Msa0608100:CDS | 40.0% | |
| TCTTTGCTAATGACAGTTCC+TGG | + | chr4_2:55105897-55105916 | None:intergenic | 40.0% | |
| GATGGATAAGATACAGCACA+TGG | - | chr4_2:55105933-55105952 | Msa0608100:CDS | 40.0% | |
| GTTCCATCTGTTGAGTAAGA+TGG | + | chr4_2:55105960-55105979 | None:intergenic | 40.0% | |
| TTTGACGGTAAGAACAGTGA+TGG | + | chr4_2:55103746-55103765 | None:intergenic | 40.0% | |
| GATGATGAAGATGACGAAGA+GGG | + | chr4_2:55103785-55103804 | None:intergenic | 40.0% | |
| ! | TGATGATGAAGATGACGAAG+AGG | + | chr4_2:55103786-55103805 | None:intergenic | 40.0% |
| CAGCAATCATCAGAGAGTAA+AGG | - | chr4_2:55103809-55103828 | Msa0608100:CDS | 40.0% | |
| ! | TCGTAGGTTTTGCTTAGGAA+CGG | + | chr4_2:55103878-55103897 | None:intergenic | 40.0% |
| ! | CCATATCGTAGGTTTTGCTT+AGG | + | chr4_2:55103883-55103902 | None:intergenic | 40.0% |
| CCTAAGCAAAACCTACGATA+TGG | - | chr4_2:55103880-55103899 | Msa0608100:CDS | 40.0% | |
| AGAGTCATCAACCATATCGT+AGG | + | chr4_2:55103894-55103913 | None:intergenic | 40.0% | |
| AACCGAATCGATCGTTTCAT+GGG | - | chr4_2:55103916-55103935 | Msa0608100:CDS | 40.0% | |
| GTTACATTCGGGATGCATTT+CGG | - | chr4_2:55104271-55104290 | Msa0608100:CDS | 40.0% | |
| ACAGTAACAGTAACACTAGC+AGG | + | chr4_2:55104325-55104344 | None:intergenic | 40.0% | |
| ! | TGCTAGTGTTACTGTTACTG+TGG | - | chr4_2:55104324-55104343 | Msa0608100:CDS | 40.0% |
| ATATTCATCGGTACACCGAA+CGG | + | chr4_2:55104363-55104382 | None:intergenic | 40.0% | |
| ATTTCCAAGAGTTTCGTGGA+AGG | - | chr4_2:55104408-55104427 | Msa0608100:CDS | 40.0% | |
| GTTAAGATAGGTACCCTCTT+GGG | - | chr4_2:55104539-55104558 | Msa0608100:CDS | 40.0% | |
| TTAAGATAGGTACCCTCTTG+GGG | - | chr4_2:55104540-55104559 | Msa0608100:CDS | 40.0% | |
| CTAACTAATGAATCCCCAAG+AGG | + | chr4_2:55104556-55104575 | None:intergenic | 40.0% | |
| CAAAGTCGAGATACTTGTTC+TGG | - | chr4_2:55104592-55104611 | Msa0608100:CDS | 40.0% | |
| !!! | TCACAAGCAGGGTTTTAGAA+AGG | - | chr4_2:55104751-55104770 | Msa0608100:CDS | 40.0% |
| CGGAAATCTACTCATGCAAA+TGG | - | chr4_2:55104851-55104870 | Msa0608100:CDS | 40.0% | |
| TAAGTTTGGGCTTGATGAAG+AGG | - | chr4_2:55104934-55104953 | Msa0608100:CDS | 40.0% | |
| GTTGCCCAACATTTACCAAT+TGG | + | chr4_2:55105039-55105058 | None:intergenic | 40.0% | |
| GAAAATTGAGCCATAAAGCC+CGG | + | chr4_2:55105127-55105146 | None:intergenic | 40.0% | |
| AGTAATAGACATGTTACCGC+AGG | - | chr4_2:55105163-55105182 | Msa0608100:intron | 40.0% | |
| ATGTTACCGCAGGTAAAAAG+AGG | - | chr4_2:55105173-55105192 | Msa0608100:intron | 40.0% | |
| AGGATTATGGGGATTCTTAG+TGG | + | chr4_2:55105230-55105249 | None:intergenic | 40.0% | |
| AATCCCCATAATCCTCTTGA+TGG | - | chr4_2:55105235-55105254 | Msa0608100:intron | 40.0% | |
| ACGTCCATCAAGAGGATTAT+GGG | + | chr4_2:55105242-55105261 | None:intergenic | 40.0% | |
| TTAACAACACGTCCATCAAG+AGG | + | chr4_2:55105250-55105269 | None:intergenic | 40.0% | |
| TTTGCAGCCTCATTAATCGA+AGG | + | chr4_2:55105280-55105299 | None:intergenic | 40.0% | |
| TGCAAATGAACAGTTCTGCA+AGG | - | chr4_2:55105320-55105339 | Msa0608100:CDS | 40.0% | |
| GCAAATGAACAGTTCTGCAA+GGG | - | chr4_2:55105321-55105340 | Msa0608100:CDS | 40.0% | |
| GAATGCATCAAGGTTCTTGA+TGG | + | chr4_2:55105356-55105375 | None:intergenic | 40.0% | |
| CGTCAATAAGGAATGCATCA+AGG | + | chr4_2:55105366-55105385 | None:intergenic | 40.0% | |
| CTGAAGGAACATCGTCAATA+AGG | + | chr4_2:55105378-55105397 | None:intergenic | 40.0% | |
| CTATCTAATGGAATGGCTGA+AGG | + | chr4_2:55105394-55105413 | None:intergenic | 40.0% | |
| GACGAACTACTGCTATCTAA+TGG | + | chr4_2:55105406-55105425 | None:intergenic | 40.0% | |
| TTCTGGTGTAACACTTTCTG+AGG | - | chr4_2:55105435-55105454 | Msa0608100:intron | 40.0% | |
| TATGACCAATAGCATGTCTG+AGG | - | chr4_2:55105516-55105535 | Msa0608100:intron | 40.0% | |
| TTGTACCTCAGACATGCTAT+TGG | + | chr4_2:55105524-55105543 | None:intergenic | 40.0% | |
| ! | TTGGCGTGCTGTTGTAAATT+CGG | + | chr4_2:55105593-55105612 | None:intergenic | 40.0% |
| ! | TTTTGGTGAAGTTCAAGGAC+TGG | - | chr4_2:55105627-55105646 | Msa0608100:intron | 40.0% |
| !! | GACCCCACAAAATTTTGATC+AGG | + | chr4_2:55105676-55105695 | None:intergenic | 40.0% |
| ! | CAAAATTTTGTGGGGTCTGT+CGG | - | chr4_2:55105679-55105698 | Msa0608100:intron | 40.0% |
| ! | GGATGTGATATCAGCTGTTT+TGG | - | chr4_2:55105720-55105739 | Msa0608100:CDS | 40.0% |
| !! | CAGAATTCATCGTTGATTCC+TGG | + | chr4_2:55105790-55105809 | None:intergenic | 40.0% |
| CAGGAATCAACGATGAATTC+TGG | - | chr4_2:55105788-55105807 | Msa0608100:CDS | 40.0% | |
| TCTTTGCTAATGACAGTTCC+TGG | + | chr4_2:55105897-55105916 | None:intergenic | 40.0% | |
| GATGGATAAGATACAGCACA+TGG | - | chr4_2:55105933-55105952 | Msa0608100:CDS | 40.0% | |
| GTTCCATCTGTTGAGTAAGA+TGG | + | chr4_2:55105960-55105979 | None:intergenic | 40.0% | |
| ATGAAGATGACGAAGAGGGA+AGG | + | chr4_2:55103781-55103800 | None:intergenic | 45.0% | |
| GATCGCGAATTATGACAGCT+GGG | - | chr4_2:55103831-55103850 | Msa0608100:CDS | 45.0% | |
| ! | TAGGTTTTGCTTAGGAACGG+TGG | + | chr4_2:55103875-55103894 | None:intergenic | 45.0% |
| CAACCGAATCGATCGTTTCA+TGG | - | chr4_2:55103915-55103934 | Msa0608100:CDS | 45.0% | |
| ACCGAATCGATCGTTTCATG+GGG | - | chr4_2:55103917-55103936 | Msa0608100:CDS | 45.0% | |
| ACCCCATGAAACGATCGATT+CGG | + | chr4_2:55103921-55103940 | None:intergenic | 45.0% | |
| GGTGGAATTGAAAACGACGA+AGG | + | chr4_2:55103957-55103976 | None:intergenic | 45.0% | |
| GATGTGTTTGGAGAAATCGG+TGG | + | chr4_2:55103975-55103994 | None:intergenic | 45.0% | |
| GTTCAATTGTCTGACGAAGC+TGG | + | chr4_2:55104029-55104048 | None:intergenic | 45.0% | |
| CATTCCTTCCACGAAACTCT+TGG | + | chr4_2:55104415-55104434 | None:intergenic | 45.0% | |
| TGCAAACTGCAAAAAGTGGC+TGG | + | chr4_2:55104445-55104464 | None:intergenic | 45.0% | |
| GGTTAAGATAGGTACCCTCT+TGG | - | chr4_2:55104538-55104557 | Msa0608100:CDS | 45.0% | |
| AGATACTTGTTCTGGTGCTC+TGG | - | chr4_2:55104600-55104619 | Msa0608100:CDS | 45.0% | |
| CTTCATGAGCAAATTCCCAG+CGG | + | chr4_2:55104787-55104806 | None:intergenic | 45.0% | |
| TGTGTGGAAGTGGGTAAGTT+TGG | - | chr4_2:55104920-55104939 | Msa0608100:CDS | 45.0% | |
| GTGTGGAAGTGGGTAAGTTT+GGG | - | chr4_2:55104921-55104940 | Msa0608100:CDS | 45.0% | |
| GGACAAGAATGTTCTCATGC+AGG | - | chr4_2:55104973-55104992 | Msa0608100:intron | 45.0% | |
| GCAACAGATGATGTCCTTTC+TGG | - | chr4_2:55105084-55105103 | Msa0608100:intron | 45.0% | |
| ! | GATGATGTCCTTTCTGGCAA+AGG | - | chr4_2:55105090-55105109 | Msa0608100:intron | 45.0% |
| ATTCATGGCCTTTGCCAGAA+AGG | + | chr4_2:55105101-55105120 | None:intergenic | 45.0% | |
| CATAAAGCCCGGACTATTCA+TGG | + | chr4_2:55105116-55105135 | None:intergenic | 45.0% | |
| CATGAATAGTCCGGGCTTTA+TGG | - | chr4_2:55105114-55105133 | Msa0608100:intron | 45.0% | |
| TTACCGCAGGTAAAAAGAGG+CGG | - | chr4_2:55105176-55105195 | Msa0608100:intron | 45.0% | |
| CGTCCATCAAGAGGATTATG+GGG | + | chr4_2:55105241-55105260 | None:intergenic | 45.0% | |
| CACGTCCATCAAGAGGATTA+TGG | + | chr4_2:55105243-55105262 | None:intergenic | 45.0% | |
| GTACCAGCCTTCGATTAATG+AGG | - | chr4_2:55105270-55105289 | Msa0608100:CDS | 45.0% | |
| AATGAACAGTTCTGCAAGGG+TGG | - | chr4_2:55105324-55105343 | Msa0608100:intron | 45.0% | |
| TGCATCAAGGTTCTTGATGG+AGG | + | chr4_2:55105353-55105372 | None:intergenic | 45.0% | |
| TGTTACACCAGAAACTTGGG+TGG | + | chr4_2:55105428-55105447 | None:intergenic | 45.0% | |
| CATGACTGCTCAGAAATAGG+TGG | + | chr4_2:55105463-55105482 | None:intergenic | 45.0% | |
| ! | TGGCGTGCTGTTGTAAATTC+GGG | + | chr4_2:55105592-55105611 | None:intergenic | 45.0% |
| AGCACGCCAAGACAATATGT+TGG | - | chr4_2:55105603-55105622 | Msa0608100:intron | 45.0% | |
| CGGTGAGAATGATGAGGAAT+TGG | - | chr4_2:55105699-55105718 | Msa0608100:CDS | 45.0% | |
| !! | ATCGTTGATTCCTGGAAGCT+TGG | + | chr4_2:55105782-55105801 | None:intergenic | 45.0% |
| GGAGACACAGACGAAGTTAA+AGG | - | chr4_2:55105841-55105860 | Msa0608100:CDS | 45.0% | |
| GGACCATCTTACTCAACAGA+TGG | - | chr4_2:55105954-55105973 | Msa0608100:CDS | 45.0% | |
| ATGAAGATGACGAAGAGGGA+AGG | + | chr4_2:55103781-55103800 | None:intergenic | 45.0% | |
| GATCGCGAATTATGACAGCT+GGG | - | chr4_2:55103831-55103850 | Msa0608100:CDS | 45.0% | |
| ! | TAGGTTTTGCTTAGGAACGG+TGG | + | chr4_2:55103875-55103894 | None:intergenic | 45.0% |
| CAACCGAATCGATCGTTTCA+TGG | - | chr4_2:55103915-55103934 | Msa0608100:CDS | 45.0% | |
| ACCGAATCGATCGTTTCATG+GGG | - | chr4_2:55103917-55103936 | Msa0608100:CDS | 45.0% | |
| ACCCCATGAAACGATCGATT+CGG | + | chr4_2:55103921-55103940 | None:intergenic | 45.0% | |
| GGTGGAATTGAAAACGACGA+AGG | + | chr4_2:55103957-55103976 | None:intergenic | 45.0% | |
| GATGTGTTTGGAGAAATCGG+TGG | + | chr4_2:55103975-55103994 | None:intergenic | 45.0% | |
| GTTCAATTGTCTGACGAAGC+TGG | + | chr4_2:55104029-55104048 | None:intergenic | 45.0% | |
| CATTCCTTCCACGAAACTCT+TGG | + | chr4_2:55104415-55104434 | None:intergenic | 45.0% | |
| TGCAAACTGCAAAAAGTGGC+TGG | + | chr4_2:55104445-55104464 | None:intergenic | 45.0% | |
| GGTTAAGATAGGTACCCTCT+TGG | - | chr4_2:55104538-55104557 | Msa0608100:CDS | 45.0% | |
| AGATACTTGTTCTGGTGCTC+TGG | - | chr4_2:55104600-55104619 | Msa0608100:CDS | 45.0% | |
| CTTCATGAGCAAATTCCCAG+CGG | + | chr4_2:55104787-55104806 | None:intergenic | 45.0% | |
| TGTGTGGAAGTGGGTAAGTT+TGG | - | chr4_2:55104920-55104939 | Msa0608100:CDS | 45.0% | |
| GTGTGGAAGTGGGTAAGTTT+GGG | - | chr4_2:55104921-55104940 | Msa0608100:CDS | 45.0% | |
| GGACAAGAATGTTCTCATGC+AGG | - | chr4_2:55104973-55104992 | Msa0608100:intron | 45.0% | |
| GCAACAGATGATGTCCTTTC+TGG | - | chr4_2:55105084-55105103 | Msa0608100:intron | 45.0% | |
| ! | GATGATGTCCTTTCTGGCAA+AGG | - | chr4_2:55105090-55105109 | Msa0608100:intron | 45.0% |
| ATTCATGGCCTTTGCCAGAA+AGG | + | chr4_2:55105101-55105120 | None:intergenic | 45.0% | |
| CATAAAGCCCGGACTATTCA+TGG | + | chr4_2:55105116-55105135 | None:intergenic | 45.0% | |
| CATGAATAGTCCGGGCTTTA+TGG | - | chr4_2:55105114-55105133 | Msa0608100:intron | 45.0% | |
| TTACCGCAGGTAAAAAGAGG+CGG | - | chr4_2:55105176-55105195 | Msa0608100:intron | 45.0% | |
| CGTCCATCAAGAGGATTATG+GGG | + | chr4_2:55105241-55105260 | None:intergenic | 45.0% | |
| CACGTCCATCAAGAGGATTA+TGG | + | chr4_2:55105243-55105262 | None:intergenic | 45.0% | |
| GTACCAGCCTTCGATTAATG+AGG | - | chr4_2:55105270-55105289 | Msa0608100:CDS | 45.0% | |
| AATGAACAGTTCTGCAAGGG+TGG | - | chr4_2:55105324-55105343 | Msa0608100:intron | 45.0% | |
| TGCATCAAGGTTCTTGATGG+AGG | + | chr4_2:55105353-55105372 | None:intergenic | 45.0% | |
| TGTTACACCAGAAACTTGGG+TGG | + | chr4_2:55105428-55105447 | None:intergenic | 45.0% | |
| CATGACTGCTCAGAAATAGG+TGG | + | chr4_2:55105463-55105482 | None:intergenic | 45.0% | |
| ! | TGGCGTGCTGTTGTAAATTC+GGG | + | chr4_2:55105592-55105611 | None:intergenic | 45.0% |
| AGCACGCCAAGACAATATGT+TGG | - | chr4_2:55105603-55105622 | Msa0608100:intron | 45.0% | |
| CGGTGAGAATGATGAGGAAT+TGG | - | chr4_2:55105699-55105718 | Msa0608100:CDS | 45.0% | |
| !! | ATCGTTGATTCCTGGAAGCT+TGG | + | chr4_2:55105782-55105801 | None:intergenic | 45.0% |
| GGAGACACAGACGAAGTTAA+AGG | - | chr4_2:55105841-55105860 | Msa0608100:CDS | 45.0% | |
| GGACCATCTTACTCAACAGA+TGG | - | chr4_2:55105954-55105973 | Msa0608100:CDS | 45.0% | |
| GGATCGCGAATTATGACAGC+TGG | - | chr4_2:55103830-55103849 | Msa0608100:CDS | 50.0% | |
| ATGAGCAAATTCCCAGCGGT+CGG | + | chr4_2:55104783-55104802 | None:intergenic | 50.0% | |
| ! | CGCTGGGAATTTGCTCATGA+AGG | - | chr4_2:55104785-55104804 | Msa0608100:CDS | 50.0% |
| ACTTCCACACATGACCCAAC+AGG | + | chr4_2:55104911-55104930 | None:intergenic | 50.0% | |
| TGTTGGGTCATGTGTGGAAG+TGG | - | chr4_2:55104910-55104929 | Msa0608100:CDS | 50.0% | |
| GTTGGGTCATGTGTGGAAGT+GGG | - | chr4_2:55104911-55104930 | Msa0608100:CDS | 50.0% | |
| GGCAAAGGCCATGAATAGTC+CGG | - | chr4_2:55105105-55105124 | Msa0608100:intron | 50.0% | |
| GCAAAGGCCATGAATAGTCC+GGG | - | chr4_2:55105106-55105125 | Msa0608100:intron | 50.0% | |
| AACTATCTTCTTCCTGCCCC+TGG | + | chr4_2:55105204-55105223 | None:intergenic | 50.0% | |
| CAGCCTCATTAATCGAAGGC+TGG | + | chr4_2:55105276-55105295 | None:intergenic | 50.0% | |
| AGTTCGTCCACCCAAGTTTC+TGG | - | chr4_2:55105418-55105437 | Msa0608100:intron | 50.0% | |
| ACACAGTCAGTCAACACTGC+AGG | + | chr4_2:55105553-55105572 | None:intergenic | 50.0% | |
| GTCTGTCGGTGAGAATGATG+AGG | - | chr4_2:55105693-55105712 | Msa0608100:CDS | 50.0% | |
| TTTAGGCCAAGCCCACTTAC+TGG | - | chr4_2:55105820-55105839 | Msa0608100:CDS | 50.0% | |
| CGTCTGTGTCTCCAGTAAGT+GGG | + | chr4_2:55105834-55105853 | None:intergenic | 50.0% | |
| TCGTCTGTGTCTCCAGTAAG+TGG | + | chr4_2:55105835-55105854 | None:intergenic | 50.0% | |
| GGATCGCGAATTATGACAGC+TGG | - | chr4_2:55103830-55103849 | Msa0608100:CDS | 50.0% | |
| ATGAGCAAATTCCCAGCGGT+CGG | + | chr4_2:55104783-55104802 | None:intergenic | 50.0% | |
| ! | CGCTGGGAATTTGCTCATGA+AGG | - | chr4_2:55104785-55104804 | Msa0608100:CDS | 50.0% |
| ACTTCCACACATGACCCAAC+AGG | + | chr4_2:55104911-55104930 | None:intergenic | 50.0% | |
| TGTTGGGTCATGTGTGGAAG+TGG | - | chr4_2:55104910-55104929 | Msa0608100:CDS | 50.0% | |
| GTTGGGTCATGTGTGGAAGT+GGG | - | chr4_2:55104911-55104930 | Msa0608100:CDS | 50.0% | |
| GGCAAAGGCCATGAATAGTC+CGG | - | chr4_2:55105105-55105124 | Msa0608100:intron | 50.0% | |
| GCAAAGGCCATGAATAGTCC+GGG | - | chr4_2:55105106-55105125 | Msa0608100:intron | 50.0% | |
| AACTATCTTCTTCCTGCCCC+TGG | + | chr4_2:55105204-55105223 | None:intergenic | 50.0% | |
| CAGCCTCATTAATCGAAGGC+TGG | + | chr4_2:55105276-55105295 | None:intergenic | 50.0% | |
| AGTTCGTCCACCCAAGTTTC+TGG | - | chr4_2:55105418-55105437 | Msa0608100:intron | 50.0% | |
| ACACAGTCAGTCAACACTGC+AGG | + | chr4_2:55105553-55105572 | None:intergenic | 50.0% | |
| GTCTGTCGGTGAGAATGATG+AGG | - | chr4_2:55105693-55105712 | Msa0608100:CDS | 50.0% | |
| TTTAGGCCAAGCCCACTTAC+TGG | - | chr4_2:55105820-55105839 | Msa0608100:CDS | 50.0% | |
| CGTCTGTGTCTCCAGTAAGT+GGG | + | chr4_2:55105834-55105853 | None:intergenic | 50.0% | |
| TCGTCTGTGTCTCCAGTAAG+TGG | + | chr4_2:55105835-55105854 | None:intergenic | 50.0% | |
| TGAGCAAATTCCCAGCGGTC+GGG | + | chr4_2:55104782-55104801 | None:intergenic | 55.0% | |
| CCACACATGACCCAACAGGT+GGG | + | chr4_2:55104907-55104926 | None:intergenic | 55.0% | |
| TCCACACATGACCCAACAGG+TGG | + | chr4_2:55104908-55104927 | None:intergenic | 55.0% | |
| TGGGCAACGTGTGCAAGTGA+TGG | - | chr4_2:55105051-55105070 | Msa0608100:intron | 55.0% | |
| ! | GAGCCGCCTCTTTTTACCTG+CGG | + | chr4_2:55105182-55105201 | None:intergenic | 55.0% |
| AGGTAAAAAGAGGCGGCTCC+AGG | - | chr4_2:55105183-55105202 | Msa0608100:intron | 55.0% | |
| GGTAAAAAGAGGCGGCTCCA+GGG | - | chr4_2:55105184-55105203 | Msa0608100:intron | 55.0% | |
| GTAAAAAGAGGCGGCTCCAG+GGG | - | chr4_2:55105185-55105204 | Msa0608100:intron | 55.0% | |
| ! | GTGTCTCCAGTAAGTGGGCT+TGG | + | chr4_2:55105829-55105848 | None:intergenic | 55.0% |
| TGAGCAAATTCCCAGCGGTC+GGG | + | chr4_2:55104782-55104801 | None:intergenic | 55.0% | |
| CCACACATGACCCAACAGGT+GGG | + | chr4_2:55104907-55104926 | None:intergenic | 55.0% | |
| TCCACACATGACCCAACAGG+TGG | + | chr4_2:55104908-55104927 | None:intergenic | 55.0% | |
| TGGGCAACGTGTGCAAGTGA+TGG | - | chr4_2:55105051-55105070 | Msa0608100:intron | 55.0% | |
| ! | GAGCCGCCTCTTTTTACCTG+CGG | + | chr4_2:55105182-55105201 | None:intergenic | 55.0% |
| AGGTAAAAAGAGGCGGCTCC+AGG | - | chr4_2:55105183-55105202 | Msa0608100:intron | 55.0% | |
| GGTAAAAAGAGGCGGCTCCA+GGG | - | chr4_2:55105184-55105203 | Msa0608100:intron | 55.0% | |
| GTAAAAAGAGGCGGCTCCAG+GGG | - | chr4_2:55105185-55105204 | Msa0608100:intron | 55.0% | |
| ! | GTGTCTCCAGTAAGTGGGCT+TGG | + | chr4_2:55105829-55105848 | None:intergenic | 55.0% |
| GGTGATTGGAGAGGGAGCTG+TGG | - | chr4_2:55104234-55104253 | Msa0608100:CDS | 60.0% | |
| ! | GGTGCTGCCATGCTTCCGTT+CGG | - | chr4_2:55104345-55104364 | Msa0608100:CDS | 60.0% |
| CGGTACACCGAACGGAAGCA+TGG | + | chr4_2:55104355-55104374 | None:intergenic | 60.0% | |
| AAAGGTTGACCCCGACCGCT+GGG | - | chr4_2:55104769-55104788 | Msa0608100:CDS | 60.0% | |
| GAGCAAATTCCCAGCGGTCG+GGG | + | chr4_2:55104781-55104800 | None:intergenic | 60.0% | |
| AAGCCGCAGAACCCACCTGT+TGG | - | chr4_2:55104893-55104912 | Msa0608100:CDS | 60.0% | |
| AGCCGCAGAACCCACCTGTT+GGG | - | chr4_2:55104894-55104913 | Msa0608100:CDS | 60.0% | |
| ! | GACCCAACAGGTGGGTTCTG+CGG | + | chr4_2:55104899-55104918 | None:intergenic | 60.0% |
| CCCACCTGTTGGGTCATGTG+TGG | - | chr4_2:55104904-55104923 | Msa0608100:CDS | 60.0% | |
| GGTGATTGGAGAGGGAGCTG+TGG | - | chr4_2:55104234-55104253 | Msa0608100:CDS | 60.0% | |
| ! | GGTGCTGCCATGCTTCCGTT+CGG | - | chr4_2:55104345-55104364 | Msa0608100:CDS | 60.0% |
| CGGTACACCGAACGGAAGCA+TGG | + | chr4_2:55104355-55104374 | None:intergenic | 60.0% | |
| AAAGGTTGACCCCGACCGCT+GGG | - | chr4_2:55104769-55104788 | Msa0608100:CDS | 60.0% | |
| GAGCAAATTCCCAGCGGTCG+GGG | + | chr4_2:55104781-55104800 | None:intergenic | 60.0% | |
| AAGCCGCAGAACCCACCTGT+TGG | - | chr4_2:55104893-55104912 | Msa0608100:CDS | 60.0% | |
| AGCCGCAGAACCCACCTGTT+GGG | - | chr4_2:55104894-55104913 | Msa0608100:CDS | 60.0% | |
| ! | GACCCAACAGGTGGGTTCTG+CGG | + | chr4_2:55104899-55104918 | None:intergenic | 60.0% |
| CCCACCTGTTGGGTCATGTG+TGG | - | chr4_2:55104904-55104923 | Msa0608100:CDS | 60.0% | |
| GAAAGGTTGACCCCGACCGC+TGG | - | chr4_2:55104768-55104787 | Msa0608100:CDS | 65.0% | |
| GAAAGGTTGACCCCGACCGC+TGG | - | chr4_2:55104768-55104787 | Msa0608100:CDS | 65.0% | |
| AAAGAGGCGGCTCCAGGGGC+AGG | - | chr4_2:55105189-55105208 | Msa0608100:intron | 70.0% | |
| AAAGAGGCGGCTCCAGGGGC+AGG | - | chr4_2:55105189-55105208 | Msa0608100:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 55103734 | 55106011 | 55103734 | ID=Msa0608100;Name=Msa0608100 |
| chr4_2 | mRNA | 55103734 | 55106011 | 55103734 | ID=Msa0608100-mRNA-1;Parent=Msa0608100;Name=Msa0608100-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0.33|1|0|0.66|3|0|549 |
| chr4_2 | exon | 55103734 | 55104976 | 55103734 | ID=Msa0608100-mRNA-1:exon:13990;Parent=Msa0608100-mRNA-1 |
| chr4_2 | exon | 55105257 | 55105342 | 55105257 | ID=Msa0608100-mRNA-1:exon:13989;Parent=Msa0608100-mRNA-1 |
| chr4_2 | exon | 55105691 | 55106011 | 55105691 | ID=Msa0608100-mRNA-1:exon:13988;Parent=Msa0608100-mRNA-1 |
| chr4_2 | CDS | 55105691 | 55106011 | 55105691 | ID=Msa0608100-mRNA-1:cds;Parent=Msa0608100-mRNA-1 |
| chr4_2 | CDS | 55105257 | 55105342 | 55105257 | ID=Msa0608100-mRNA-1:cds;Parent=Msa0608100-mRNA-1 |
| chr4_2 | CDS | 55103734 | 55104976 | 55103734 | ID=Msa0608100-mRNA-1:cds;Parent=Msa0608100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
