AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608520 MtrunA17_Chr4g0040681 95.644 505 16 2 1 500 1 504 0.0 1000
Msa0608520 MtrunA17_Chr4g0046291 47.853 489 190 11 13 497 11 438 3.08e-141 414
Msa0608520 MtrunA17_Chr2g0283011 43.284 67 37 1 14 79 10 76 4.41e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608520 AT1G28520.4 47.205 483 168 11 13 476 12 426 8.22e-135 399
Msa0608520 AT1G28520.1 47.205 483 168 11 13 476 12 426 8.22e-135 399
Msa0608520 AT1G28520.2 47.205 483 168 11 13 476 12 426 8.22e-135 399
Msa0608520 AT1G28520.5 47.205 483 168 11 13 476 12 426 8.22e-135 399
Msa0608520 AT1G28520.3 45.417 480 165 10 13 476 12 410 3.46e-127 379
Msa0608520 AT2G42400.1 44.422 502 195 16 13 489 8 450 4.73e-118 355

Find 149 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAATTACACCACAAATTT+TGG 0.120500 4_2:+55675597 Msa0608520:CDS
GTGTCTCTCCTTCTCTTTCA+TGG 0.160134 4_2:-55673637 None:intergenic
CCAGAGTCAAATGCCCTTCT+AGG 0.198187 4_2:-55676179 None:intergenic
GTGCACTGTGGGACTGTTTC+AGG 0.229105 4_2:+55675688 Msa0608520:CDS
CGGATATTTGGAAGAATATT+AGG 0.243736 4_2:-55675633 None:intergenic
AATTGAAAGACATACATTTA+AGG 0.245998 4_2:-55673802 None:intergenic
CAGTCCCACAGTGCACATTT+TGG 0.247458 4_2:-55675681 None:intergenic
GAAGGTGGAGGGCGGATATT+TGG 0.256860 4_2:-55675645 None:intergenic
CGTCGACTTGTAGATATTTC+AGG 0.259494 4_2:+55676668 Msa0608520:three_prime_UTR
ATGCCACCAGGTCGCAAAAT+TGG 0.260053 4_2:-55675795 None:intergenic
GCCATGCCTGAGCTATTTAA+AGG 0.279844 4_2:-55675396 None:intergenic
TTTGACGCAACTACTTCTTC+TGG 0.288517 4_2:-55673221 None:intergenic
GAAGTATTTATTTAATATTC+AGG 0.302355 4_2:-55676617 None:intergenic
ATTCGGTTTGAATCAAGATA+TGG 0.326854 4_2:+55675437 Msa0608520:CDS
GATTACTACTACAGTAATTC+TGG 0.333425 4_2:-55675734 None:intergenic
GCAACTACTTCTTCTGGAAT+TGG 0.351512 4_2:-55673215 None:intergenic
GGGAGCCTTGGTTCGTTCCC+CGG 0.354545 4_2:+55673885 Msa0608520:CDS
GGAGCCTTGGTTCGTTCCCC+GGG 0.354545 4_2:+55673886 Msa0608520:CDS
TTCTTGAGCGTGAAACTGTT+AGG 0.354570 4_2:+55676135 Msa0608520:CDS
TAGTAGTAATCACGAGCTTT+TGG 0.358062 4_2:+55675746 Msa0608520:CDS
TGTTCTTTGACAAGCCTAGA+AGG 0.358781 4_2:+55676165 Msa0608520:CDS
ATATACCTTGAGGCGGTTGC+AGG 0.367820 4_2:-55673315 None:intergenic
CAACCACGCCCACAATAATC+AGG 0.369577 4_2:-55676224 None:intergenic
AAAGCCCCTTGGAATGCTTC+AGG 0.372413 4_2:+55675912 Msa0608520:CDS
CTTTCTTGCAGACTGAAGAT+TGG 0.379338 4_2:-55673688 None:intergenic
GAGGCCAAGTCTCAGAATAT+TGG 0.400679 4_2:+55676590 Msa0608520:CDS
CAGCTCTGATTTAATTTGTC+GGG 0.416431 4_2:+55675479 Msa0608520:CDS
GCTAAATTTAATCTTGAAGA+AGG 0.418248 4_2:+55675546 Msa0608520:CDS
TTTCTGGTAAGCAACCTTCA+TGG 0.419867 4_2:-55676364 None:intergenic
CAATCTTCAGTCTGCAAGAA+AGG 0.425162 4_2:+55673689 Msa0608520:CDS
CGGTTGCAGGAAGGTTGTTC+CGG 0.429469 4_2:-55673302 None:intergenic
ATTCTATAGGATGGGAGCCT+TGG 0.430671 4_2:+55673873 Msa0608520:intron
GACTGTTTCAGGCCTGCTCA+AGG 0.443030 4_2:+55675699 Msa0608520:CDS
GCTGCTCCGTCGCCAGATGA+TGG 0.448458 4_2:+55676545 Msa0608520:CDS
CAAGTCGACGACCAGTCATT+TGG 0.451245 4_2:-55676655 None:intergenic
ATCAGTCCTCTGACTAAACC+TGG 0.453669 4_2:+55673954 Msa0608520:CDS
CCTAGAAGGGCATTTGACTC+TGG 0.453832 4_2:+55676179 Msa0608520:CDS
CATACTCTTGCATGCTGAGT+TGG 0.455978 4_2:+55676765 Msa0608520:three_prime_UTR
TAGCTCAGGCATGGCTCAGT+TGG 0.463141 4_2:+55675404 Msa0608520:CDS
GAAGCAGCACCTTCACACTT+AGG 0.463567 4_2:-55675885 None:intergenic
TGCTGATTTACAAAACAAGA+TGG 0.465472 4_2:+55676508 Msa0608520:CDS
AAGCAGCACCTTCACACTTA+GGG 0.467565 4_2:-55675884 None:intergenic
GCTAGGAAAGCAGAAGGTGG+AGG 0.468704 4_2:-55675657 None:intergenic
TGCCACTCAACATAATCAAC+AGG 0.470016 4_2:-55676317 None:intergenic
TCAACTGTTACAAGGATTTG+AGG 0.470109 4_2:+55673917 Msa0608520:CDS
AGCAGTCCTTTAAATAGCTC+AGG 0.483033 4_2:+55675390 Msa0608520:CDS
TCTTGAGCGTGAAACTGTTA+GGG 0.483389 4_2:+55676136 Msa0608520:CDS
CAGGCCAATATTCTGAGACT+TGG 0.484185 4_2:-55676594 None:intergenic
CTGATTATTGTGGGCGTGGT+TGG 0.485513 4_2:+55676225 Msa0608520:CDS
CTTGTAGATATTTCAGGATG+GGG 0.493360 4_2:+55676674 Msa0608520:three_prime_UTR
TCCTAAAGGAAAAGTGACTA+AGG 0.496242 4_2:+55676478 Msa0608520:CDS
ACAAATCGCCGCCGAGGGTA+GGG 0.496907 4_2:+55673268 Msa0608520:five_prime_UTR
CACATGGTGAATAAGATTCA+AGG 0.499116 4_2:+55673657 Msa0608520:CDS
AACAGTTGAGCTAGTTCCCC+GGG 0.501649 4_2:-55673903 None:intergenic
CTGCTTCAACGAAAGCCCCT+TGG 0.502920 4_2:+55675901 Msa0608520:CDS
ACTTGTAGATATTTCAGGAT+GGG 0.503384 4_2:+55676673 Msa0608520:three_prime_UTR
CACTGCTCTAACCCTTGAGC+AGG 0.504462 4_2:-55675711 None:intergenic
TATTTATTTAATATTCAGGC+AGG 0.504657 4_2:-55676613 None:intergenic
CATACATTTAAGGAGGTAGC+TGG 0.508452 4_2:-55673792 None:intergenic
TCAGGATGGGGTTCAGATTG+TGG 0.509656 4_2:+55676686 Msa0608520:three_prime_UTR
ATCAAGGAAGCAGGTGATGA+AGG 0.514451 4_2:+55676253 Msa0608520:CDS
ATTTGTCGGGACCACAGCCT+CGG 0.516229 4_2:+55675492 Msa0608520:CDS
TGCTGTTCTTGCAAAGACAC+TGG 0.517048 4_2:+55675845 Msa0608520:CDS
AAAGTTGTCTCCAAAATTTG+TGG 0.522041 4_2:-55675607 None:intergenic
ACAGCTCTGATTTAATTTGT+CGG 0.522169 4_2:+55675478 Msa0608520:CDS
TTGTTGATAAGCAACGATCA+TGG 0.529822 4_2:-55676394 None:intergenic
TTTGTCGGGACCACAGCCTC+GGG 0.529845 4_2:+55675493 Msa0608520:CDS
ATCCCTGATTATTGTGGGCG+TGG 0.530254 4_2:+55676221 Msa0608520:CDS
GGGCATTTGACTCTGGAACT+AGG 0.533243 4_2:+55676186 Msa0608520:CDS
AAGCAGGTGATGAAGGAACA+TGG 0.536829 4_2:+55676260 Msa0608520:CDS
AGATCCATCCCTGATTATTG+TGG 0.539369 4_2:+55676215 Msa0608520:CDS
GATCCATCCCTGATTATTGT+GGG 0.542160 4_2:+55676216 Msa0608520:CDS
ACTGTTTCAGGCCTGCTCAA+GGG 0.545418 4_2:+55675700 Msa0608520:CDS
TCAGAAATCCATGAAAGAGA+AGG 0.547366 4_2:+55673629 Msa0608520:CDS
CTGCGTTGTACCCGAGGCTG+TGG 0.548854 4_2:-55675503 None:intergenic
TACTAACCTGAAGCATTCCA+AGG 0.549098 4_2:-55675918 None:intergenic
TCAACATAATCAACAGGCTG+TGG 0.549517 4_2:-55676311 None:intergenic
GCTGATTTACAAAACAAGAT+GGG 0.550937 4_2:+55676509 Msa0608520:CDS
TATGAAATCAATAACCATGA+AGG 0.551452 4_2:+55676350 Msa0608520:CDS
CGAAAGTATGACCTAGTGAC+TGG 0.552272 4_2:-55675344 None:intergenic
TTCAAACAAATCGCCGCCGA+GGG 0.552343 4_2:+55673263 Msa0608520:five_prime_UTR
GTATGATGAAAGAAAACTCA+GGG 0.555472 4_2:+55673583 Msa0608520:exon
TTACTTCTGCGTTGTACCCG+AGG 0.555658 4_2:-55675509 None:intergenic
AGCCCCAAAATGTGCACTGT+GGG 0.556411 4_2:+55675677 Msa0608520:CDS
AGGTTTAGTCAGAGGACTGA+TGG 0.559286 4_2:-55673952 None:intergenic
CTAGGAAAGCAGAAGGTGGA+GGG 0.562417 4_2:-55675656 None:intergenic
AACAAATCGCCGCCGAGGGT+AGG 0.562847 4_2:+55673267 Msa0608520:five_prime_UTR
TCAGTTGCTTCGAGAGTGGA+AGG 0.563881 4_2:+55673755 Msa0608520:CDS
GTTCTTTGACAAGCCTAGAA+GGG 0.566867 4_2:+55676166 Msa0608520:CDS
CTTCAAACAAATCGCCGCCG+AGG 0.566974 4_2:+55673262 Msa0608520:five_prime_UTR
AAAGACACTGGGAAAAGAAG+TGG 0.569750 4_2:+55675857 Msa0608520:CDS
GAACTAGCTCAACTGTTACA+AGG 0.571434 4_2:+55673909 Msa0608520:CDS
TAATCAGTGTTAAACAGCCC+AGG 0.573081 4_2:-55673972 None:intergenic
TTGGCATGAATCAAGGAAGC+AGG 0.575003 4_2:+55676244 Msa0608520:CDS
TAACAGTTGAGCTAGTTCCC+CGG 0.575974 4_2:-55673904 None:intergenic
TCCTTTAAATAGCTCAGGCA+TGG 0.578059 4_2:+55675395 Msa0608520:CDS
TGCATCAGTTGCTTCGAGAG+TGG 0.578160 4_2:+55673751 Msa0608520:CDS
TACTGATATTCTCATCATTG+AGG 0.580303 4_2:+55673722 Msa0608520:CDS
GGCGTGGTTGGCATGAATCA+AGG 0.581508 4_2:+55676237 Msa0608520:CDS
TTGCAGGAAGGTTGTTCCGG+TGG 0.584750 4_2:-55673299 None:intergenic
ACCTTCCTGCAACCGCCTCA+AGG 0.585156 4_2:+55673310 Msa0608520:five_prime_UTR
AGCAGGTGATGAAGGAACAT+GGG 0.587152 4_2:+55676261 Msa0608520:CDS
AGATGATGGAAAATCTGTCA+AGG 0.589213 4_2:+55676559 Msa0608520:CDS
GACTTGTAGATATTTCAGGA+TGG 0.589529 4_2:+55676672 Msa0608520:three_prime_UTR
GGTATGATGAAAGAAAACTC+AGG 0.594470 4_2:+55673582 Msa0608520:exon
GCTGTTCTTGCAAAGACACT+GGG 0.597625 4_2:+55675846 Msa0608520:CDS
GGGTAGGGTTCTCATTCCAC+CGG 0.600797 4_2:+55673283 Msa0608520:five_prime_UTR
GATATGGATCACAACGCTGT+AGG 0.601822 4_2:+55675453 Msa0608520:CDS
TGACTGATTATTGTGGTGGT+AGG 0.602008 4_2:+55676738 Msa0608520:three_prime_UTR
AACAGCCCAGGTTTAGTCAG+AGG 0.603193 4_2:-55673960 None:intergenic
ACAAAAGAGATCATATTACA+TGG 0.603201 4_2:+55676286 Msa0608520:CDS
ACCTTGAGGCGGTTGCAGGA+AGG 0.610796 4_2:-55673311 None:intergenic
TGAAAGACATACATTTAAGG+AGG 0.614720 4_2:-55673799 None:intergenic
AATATTCTGAGACTTGGCCT+CGG 0.616309 4_2:-55676588 None:intergenic
ACATGGTGAATAAGATTCAA+GGG 0.617617 4_2:+55673658 Msa0608520:CDS
TCACTAGGTCATACTTTCGA+AGG 0.619681 4_2:+55675348 Msa0608520:CDS
AAGACACTGGGAAAAGAAGT+GGG 0.621213 4_2:+55675858 Msa0608520:CDS
ACGCCCACAATAATCAGGGA+TGG 0.621905 4_2:-55676219 None:intergenic
AGCGTGAAACTGTTAGGGAG+TGG 0.622146 4_2:+55676141 Msa0608520:CDS
GGGGCTAGGAAAGCAGAAGG+TGG 0.622810 4_2:-55675660 None:intergenic
ACTAACCTGAAGCATTCCAA+GGG 0.625065 4_2:-55675917 None:intergenic
TTTGATAATAACCAGTCACT+AGG 0.626203 4_2:+55675333 Msa0608520:CDS
TTTGGGGCTAGGAAAGCAGA+AGG 0.630230 4_2:-55675663 None:intergenic
GTGGGCATCCCTAAGTGTGA+AGG 0.630659 4_2:+55675876 Msa0608520:CDS
TGGAATGAGAACCCTACCCT+CGG 0.631803 4_2:-55673279 None:intergenic
GATGATGGAAAATCTGTCAA+GGG 0.632198 4_2:+55676560 Msa0608520:CDS
GCAAGAACAGCAGCAAACAA+AGG 0.637682 4_2:-55675834 None:intergenic
GTCTGTATAATGCACAACCA+TGG 0.640803 4_2:-55676424 None:intergenic
AACCACGCCCACAATAATCA+GGG 0.641167 4_2:-55676223 None:intergenic
GTTCCCCGGGGAACGAACCA+AGG 0.641862 4_2:-55673890 None:intergenic
GCAGGTGATGAAGGAACATG+GGG 0.643689 4_2:+55676262 Msa0608520:CDS
AGCCTGTTGATTATGTTGAG+TGG 0.648782 4_2:+55676315 Msa0608520:CDS
TCAGTCCTCTGACTAAACCT+GGG 0.653984 4_2:+55673955 Msa0608520:CDS
TCTTTCACATCAATGCCACC+AGG 0.663784 4_2:-55675807 None:intergenic
GGAAAGCAGAAGGTGGAGGG+CGG 0.666552 4_2:-55675653 None:intergenic
GTAATGACTGATTATTGTGG+TGG 0.676509 4_2:+55676734 Msa0608520:three_prime_UTR
CAACATAATCAACAGGCTGT+GGG 0.679528 4_2:-55676310 None:intergenic
GAGCCTTGGTTCGTTCCCCG+GGG 0.682409 4_2:+55673887 Msa0608520:CDS
AGTAAGAATATACCTTGAGG+CGG 0.683868 4_2:-55673322 None:intergenic
ATGATGAAAGAAAACTCAGG+GGG 0.696312 4_2:+55673585 Msa0608520:CDS
GAAAGAGAAGGAGAGACACA+TGG 0.697093 4_2:+55673641 Msa0608520:CDS
TAGCCCCAAAATGTGCACTG+TGG 0.701568 4_2:+55675676 Msa0608520:CDS
GGTGGCATTGATGTGAAAGA+CGG 0.715531 4_2:+55675810 Msa0608520:CDS
AATGAGAACCCTACCCTCGG+CGG 0.726593 4_2:-55673276 None:intergenic
CTAACCTGAAGCATTCCAAG+GGG 0.741948 4_2:-55675916 None:intergenic
AAGGTAATGACTGATTATTG+TGG 0.742590 4_2:+55676731 Msa0608520:three_prime_UTR
TATGATGAAAGAAAACTCAG+GGG 0.752762 4_2:+55673584 Msa0608520:exon
ACAGTTGAGCTAGTTCCCCG+GGG 0.783595 4_2:-55673902 None:intergenic
CAGGTGATGAAGGAACATGG+GGG 0.853574 4_2:+55676263 Msa0608520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+GGG - chr4_2:55674216-55674235 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr4_2:55674217-55674236 None:intergenic 0.0%
!!! TTTTTTTTTTTTTTGAAGTA+AGG + chr4_2:55673561-55673580 Msa0608520:intron 10.0%
!! ATATACATATACATAAAAAT+TGG - chr4_2:55673847-55673866 None:intergenic 10.0%
!! TTACAAAAAAAAAAAAAAGA+GGG - chr4_2:55675182-55675201 None:intergenic 10.0%
!! ATTACAAAAAAAAAAAAAAG+AGG - chr4_2:55675183-55675202 None:intergenic 10.0%
!! ATATACATAAAAATTGGATT+TGG - chr4_2:55673841-55673860 None:intergenic 15.0%
!!! TTTTATGTATATGTATATGT+TGG + chr4_2:55673849-55673868 Msa0608520:intron 15.0%
!! ATTAGAAAAGAAAACAATTA+GGG - chr4_2:55674362-55674381 None:intergenic 15.0%
!!! TAGATTAGTTTATTAAACTA+TGG - chr4_2:55674520-55674539 None:intergenic 15.0%
!!! ATGTTAAATATTTCCATTTT+AGG - chr4_2:55674893-55674912 None:intergenic 15.0%
!!! GAAGTATTTATTTAATATTC+AGG - chr4_2:55676620-55676639 None:intergenic 15.0%
!! AATTGAAAGACATACATTTA+AGG - chr4_2:55673805-55673824 None:intergenic 20.0%
!!! TATCAGTAATGTTATTTTGA+TGG - chr4_2:55673998-55674017 None:intergenic 20.0%
!! ATATATATATAGGGGTTATA+CGG - chr4_2:55674207-55674226 None:intergenic 20.0%
!! CATTAGAAAAGAAAACAATT+AGG - chr4_2:55674363-55674382 None:intergenic 20.0%
!! CATAATTTAGAAAAGGAAAT+CGG - chr4_2:55674432-55674451 None:intergenic 20.0%
!! TTTGTGACATAATTTAGAAA+AGG - chr4_2:55674439-55674458 None:intergenic 20.0%
!!! TTTTTTAACCTTCTTGTTTA+CGG + chr4_2:55674600-55674619 Msa0608520:intron 20.0%
!! AAATATTTAACATAGAACCT+AGG + chr4_2:55674900-55674919 Msa0608520:intron 20.0%
!! AATATTTAACATAGAACCTA+GGG + chr4_2:55674901-55674920 Msa0608520:intron 20.0%
!! ACAGTTATATATATATGCTA+TGG - chr4_2:55674927-55674946 None:intergenic 20.0%
!!! ATTCAGTATTTTCAGAAATA+TGG + chr4_2:55675017-55675036 Msa0608520:intron 20.0%
!! TTATCAACAAAAATTAACCA+TGG + chr4_2:55676407-55676426 Msa0608520:CDS 20.0%
!! GATAAAAAAAAAAGTCCTAA+AGG + chr4_2:55676464-55676483 Msa0608520:CDS 20.0%
!! TATTTATTTAATATTCAGGC+AGG - chr4_2:55676616-55676635 None:intergenic 20.0%
!!! TGGAAATTTTTAACATTTCT+TGG + chr4_2:55676706-55676725 Msa0608520:three_prime_UTR 20.0%
!!! AAATTGCTTTTTGTATGTTT+GGG + chr4_2:55676839-55676858 Msa0608520:three_prime_UTR 20.0%
! TTGAATTTATAGTGATCGAT+CGG - chr4_2:55673354-55673373 None:intergenic 25.0%
!!! TAGCAATTATGAGTTTTATC+AGG + chr4_2:55674016-55674035 Msa0608520:CDS 25.0%
! GAGAATCTTCTATATATCTT+TGG + chr4_2:55674064-55674083 Msa0608520:intron 25.0%
! AAAAGAAAACAATTAGGGTA+AGG - chr4_2:55674357-55674376 None:intergenic 25.0%
! TTCTAAATTATGTCACAAAC+TGG + chr4_2:55674440-55674459 Msa0608520:intron 25.0%
!!! TTTTTAACCTTCTTGTTTAC+GGG + chr4_2:55674601-55674620 Msa0608520:intron 25.0%
! ACAAATGAATTTCAACAAGT+TGG - chr4_2:55674742-55674761 None:intergenic 25.0%
!! TTGTTGAAATTCATTTGTTG+AGG + chr4_2:55674744-55674763 Msa0608520:intron 25.0%
!! TTTCTTTAAGAGATAACAAC+TGG + chr4_2:55675287-55675306 Msa0608520:intron 25.0%
! GCTAAATTTAATCTTGAAGA+AGG + chr4_2:55675546-55675565 Msa0608520:CDS 25.0%
!! GATAATTACACCACAAATTT+TGG + chr4_2:55675597-55675616 Msa0608520:CDS 25.0%
! ACAAAAGAGATCATATTACA+TGG + chr4_2:55676286-55676305 Msa0608520:CDS 25.0%
! TATGAAATCAATAACCATGA+AGG + chr4_2:55676350-55676369 Msa0608520:CDS 25.0%
!! TTTTTAACATTTCTTGGACA+AGG + chr4_2:55676712-55676731 Msa0608520:three_prime_UTR 25.0%
!!! CAAATTGCTTTTTGTATGTT+TGG + chr4_2:55676838-55676857 Msa0608520:three_prime_UTR 25.0%
!!! AATTGCTTTTTGTATGTTTG+GGG + chr4_2:55676840-55676859 Msa0608520:three_prime_UTR 25.0%
CAAAGTAAGAATATACCTTG+AGG - chr4_2:55673328-55673347 None:intergenic 30.0%
GTATGATGAAAGAAAACTCA+GGG + chr4_2:55673583-55673602 Msa0608520:exon 30.0%
TATGATGAAAGAAAACTCAG+GGG + chr4_2:55673584-55673603 Msa0608520:exon 30.0%
ACATGGTGAATAAGATTCAA+GGG + chr4_2:55673658-55673677 Msa0608520:CDS 30.0%
TACTGATATTCTCATCATTG+AGG + chr4_2:55673722-55673741 Msa0608520:CDS 30.0%
TGAAAGACATACATTTAAGG+AGG - chr4_2:55673802-55673821 None:intergenic 30.0%
TGTATATGTTGGCATTCTAT+AGG + chr4_2:55673860-55673879 Msa0608520:intron 30.0%
!! CAATTATGAGTTTTATCAGG+AGG + chr4_2:55674019-55674038 Msa0608520:CDS 30.0%
TCACAATGTTAGTATTATGC+TGG + chr4_2:55674110-55674129 Msa0608520:intron 30.0%
CACAATGTTAGTATTATGCT+GGG + chr4_2:55674111-55674130 Msa0608520:intron 30.0%
CTAATCTAATTCCTATCATG+TGG + chr4_2:55674532-55674551 Msa0608520:intron 30.0%
TAAAAAATGTGTCAGCCAAT+AGG - chr4_2:55674587-55674606 None:intergenic 30.0%
!! TTTTAACCTTCTTGTTTACG+GGG + chr4_2:55674602-55674621 Msa0608520:intron 30.0%
TGAACTGAAAAATCAGAACA+AGG - chr4_2:55674711-55674730 None:intergenic 30.0%
!! GTTTTCTAAGAGTTCTCTTT+TGG - chr4_2:55674778-55674797 None:intergenic 30.0%
!! CTTAGAAAACATTTCTAGTC+AGG + chr4_2:55674788-55674807 Msa0608520:intron 30.0%
AAGTGGTTAATTAAGTGAAG+TGG - chr4_2:55674855-55674874 None:intergenic 30.0%
!! GATTATTAGCCTTTCATTTG+TGG + chr4_2:55675112-55675131 Msa0608520:intron 30.0%
TTAATCACACCACAAATGAA+AGG - chr4_2:55675124-55675143 None:intergenic 30.0%
GTTATCTCTTAAAGAAAAGC+AGG - chr4_2:55675284-55675303 None:intergenic 30.0%
! TTTGATAATAACCAGTCACT+AGG + chr4_2:55675333-55675352 Msa0608520:CDS 30.0%
! CAGTTGGATTTTCATTCATT+CGG + chr4_2:55675420-55675439 Msa0608520:CDS 30.0%
! ATTCGGTTTGAATCAAGATA+TGG + chr4_2:55675437-55675456 Msa0608520:CDS 30.0%
!! ACAGCTCTGATTTAATTTGT+CGG + chr4_2:55675478-55675497 Msa0608520:CDS 30.0%
! GATGAGTATGATCAACTTTT+CGG + chr4_2:55675573-55675592 Msa0608520:CDS 30.0%
AAAGTTGTCTCCAAAATTTG+TGG - chr4_2:55675610-55675629 None:intergenic 30.0%
CGGATATTTGGAAGAATATT+AGG - chr4_2:55675636-55675655 None:intergenic 30.0%
GATTACTACTACAGTAATTC+TGG - chr4_2:55675737-55675756 None:intergenic 30.0%
ATCTTGCAAATTCTACAACT+AGG + chr4_2:55675987-55676006 Msa0608520:intron 30.0%
! ACTTGTTTCTTTCGTCTATT+TGG + chr4_2:55676051-55676070 Msa0608520:intron 30.0%
TTTCTTTCGTCTATTTGGTT+GGG + chr4_2:55676056-55676075 Msa0608520:intron 30.0%
!!! CGATCATGGTTATTTTTTTC+TGG - chr4_2:55676383-55676402 None:intergenic 30.0%
!! TGCTGATTTACAAAACAAGA+TGG + chr4_2:55676508-55676527 Msa0608520:CDS 30.0%
! GCTGATTTACAAAACAAGAT+GGG + chr4_2:55676509-55676528 Msa0608520:CDS 30.0%
ACTTGTAGATATTTCAGGAT+GGG + chr4_2:55676673-55676692 Msa0608520:three_prime_UTR 30.0%
AAGGTAATGACTGATTATTG+TGG + chr4_2:55676731-55676750 Msa0608520:three_prime_UTR 30.0%
AGTAAGAATATACCTTGAGG+CGG - chr4_2:55673325-55673344 None:intergenic 35.0%
AACCCTAGAATTTCTCAACT+AGG + chr4_2:55673387-55673406 Msa0608520:intron 35.0%
GACCTAGTTGAGAAATTCTA+GGG - chr4_2:55673392-55673411 None:intergenic 35.0%
AGACCTAGTTGAGAAATTCT+AGG - chr4_2:55673393-55673412 None:intergenic 35.0%
! AATGCCTATTTTGTGTGTCT+TGG + chr4_2:55673450-55673469 Msa0608520:intron 35.0%
CATAACAGACTCATAGAAAG+TGG - chr4_2:55673517-55673536 None:intergenic 35.0%
GGTATGATGAAAGAAAACTC+AGG + chr4_2:55673582-55673601 Msa0608520:exon 35.0%
ATGATGAAAGAAAACTCAGG+GGG + chr4_2:55673585-55673604 Msa0608520:CDS 35.0%
TCAGAAATCCATGAAAGAGA+AGG + chr4_2:55673629-55673648 Msa0608520:CDS 35.0%
CACATGGTGAATAAGATTCA+AGG + chr4_2:55673657-55673676 Msa0608520:CDS 35.0%
TATGTTGGCATTCTATAGGA+TGG + chr4_2:55673864-55673883 Msa0608520:intron 35.0%
ATGTTGGCATTCTATAGGAT+GGG + chr4_2:55673865-55673884 Msa0608520:intron 35.0%
TCAACTGTTACAAGGATTTG+AGG + chr4_2:55673917-55673936 Msa0608520:CDS 35.0%
TGAGTTTCTTTCACTTGTTC+TGG + chr4_2:55674042-55674061 Msa0608520:intron 35.0%
TGTTAGTATTATGCTGGGAT+TGG + chr4_2:55674116-55674135 Msa0608520:intron 35.0%
ATATATAGGGGTTATACGGA+TGG - chr4_2:55674203-55674222 None:intergenic 35.0%
CGGAATAGTAGAACAATGTA+AGG - chr4_2:55674412-55674431 None:intergenic 35.0%
ATTAGACACAATCGTACAAC+CGG - chr4_2:55674469-55674488 None:intergenic 35.0%
! AGTGATACACTTTGGGAATT+GGG - chr4_2:55674644-55674663 None:intergenic 35.0%
CACTTAATTAACCACTTGAG+TGG + chr4_2:55674858-55674877 Msa0608520:intron 35.0%
! GTGGTTAGTTGTTCCTAAAA+TGG + chr4_2:55674877-55674896 Msa0608520:intron 35.0%
TATATATATGCTATGGCCCT+AGG - chr4_2:55674920-55674939 None:intergenic 35.0%
CTAATAATCGTACTAGCTGA+TGG - chr4_2:55675101-55675120 None:intergenic 35.0%
TCAAAACATTTCTGCACGAA+TGG - chr4_2:55675318-55675337 None:intergenic 35.0%
!! CAGCTCTGATTTAATTTGTC+GGG + chr4_2:55675479-55675498 Msa0608520:CDS 35.0%
! TAGTAGTAATCACGAGCTTT+TGG + chr4_2:55675746-55675765 Msa0608520:CDS 35.0%
GTTTCTTTCGTCTATTTGGT+TGG + chr4_2:55676055-55676074 Msa0608520:intron 35.0%
! TTGTTGATAAGCAACGATCA+TGG - chr4_2:55676397-55676416 None:intergenic 35.0%
TCCTAAAGGAAAAGTGACTA+AGG + chr4_2:55676478-55676497 Msa0608520:CDS 35.0%
!!! TCCTTAGTCACTTTTCCTTT+AGG - chr4_2:55676482-55676501 None:intergenic 35.0%
! TTGACAGATTTTCCATCATC+TGG - chr4_2:55676560-55676579 None:intergenic 35.0%
!! AGATGATGGAAAATCTGTCA+AGG + chr4_2:55676559-55676578 Msa0608520:CDS 35.0%
!! GATGATGGAAAATCTGTCAA+GGG + chr4_2:55676560-55676579 Msa0608520:CDS 35.0%
! GATGATTTTTGCCAAATGAC+TGG + chr4_2:55676644-55676663 Msa0608520:three_prime_UTR 35.0%
GACTTGTAGATATTTCAGGA+TGG + chr4_2:55676672-55676691 Msa0608520:three_prime_UTR 35.0%
CTTGTAGATATTTCAGGATG+GGG + chr4_2:55676674-55676693 Msa0608520:three_prime_UTR 35.0%
GTAATGACTGATTATTGTGG+TGG + chr4_2:55676734-55676753 Msa0608520:three_prime_UTR 35.0%
!! GCAACTACTTCTTCTGGAAT+TGG - chr4_2:55673218-55673237 None:intergenic 40.0%
TTTGACGCAACTACTTCTTC+TGG - chr4_2:55673224-55673243 None:intergenic 40.0%
GGAACCAAGACACACAAAAT+AGG - chr4_2:55673457-55673476 None:intergenic 40.0%
! ATTTTGTGTGTCTTGGTTCC+CGG + chr4_2:55673457-55673476 Msa0608520:intron 40.0%
GAAAACTCAGGGGGAAAATA+TGG + chr4_2:55673594-55673613 Msa0608520:CDS 40.0%
CTTTCTTGCAGACTGAAGAT+TGG - chr4_2:55673691-55673710 None:intergenic 40.0%
CAATCTTCAGTCTGCAAGAA+AGG + chr4_2:55673689-55673708 Msa0608520:CDS 40.0%
CATACATTTAAGGAGGTAGC+TGG - chr4_2:55673795-55673814 None:intergenic 40.0%
GAACTAGCTCAACTGTTACA+AGG + chr4_2:55673909-55673928 Msa0608520:CDS 40.0%
TAATCAGTGTTAAACAGCCC+AGG - chr4_2:55673975-55673994 None:intergenic 40.0%
TAAGGAGTGGAGTGATAAGA+AGG - chr4_2:55674157-55674176 None:intergenic 40.0%
!! GCGTGACATGTTAATTTGTC+TGG + chr4_2:55674312-55674331 Msa0608520:intron 40.0%
! TTATGTCACAAACTGGTCTC+CGG + chr4_2:55674447-55674466 Msa0608520:intron 40.0%
AATTCCTATCATGTGGTGTG+CGG + chr4_2:55674539-55674558 Msa0608520:intron 40.0%
!!! TGCGGTCTTTTAGTTCATTC+AGG + chr4_2:55674557-55674576 Msa0608520:intron 40.0%
GTTCATTCAGGCAAACCTAT+TGG + chr4_2:55674569-55674588 Msa0608520:intron 40.0%
GTAATTCCCCGTAAACAAGA+AGG - chr4_2:55674611-55674630 None:intergenic 40.0%
! ATACACTTTGGGAATTGGGT+GGG - chr4_2:55674640-55674659 None:intergenic 40.0%
! GAGTGATACACTTTGGGAAT+TGG - chr4_2:55674645-55674664 None:intergenic 40.0%
CCTAAAGAGATCAGATGACT+TGG - chr4_2:55674677-55674696 None:intergenic 40.0%
CCAAGTCATCTGATCTCTTT+AGG + chr4_2:55674674-55674693 Msa0608520:intron 40.0%
!! AGTCAGGACTAGTTAACCAT+TGG + chr4_2:55674804-55674823 Msa0608520:intron 40.0%
TAATCGTACTAGCTGATGGA+TGG - chr4_2:55675097-55675116 None:intergenic 40.0%
TCACTAGGTCATACTTTCGA+AGG + chr4_2:55675348-55675367 Msa0608520:CDS 40.0%
AGCAGTCCTTTAAATAGCTC+AGG + chr4_2:55675390-55675409 Msa0608520:CDS 40.0%
TCCTTTAAATAGCTCAGGCA+TGG + chr4_2:55675395-55675414 Msa0608520:CDS 40.0%
TTTGGCAAAAAGTGAGGATG+AGG + chr4_2:55675764-55675783 Msa0608520:CDS 40.0%
TTGGCAAAAAGTGAGGATGA+GGG + chr4_2:55675765-55675784 Msa0608520:CDS 40.0%
AAAGACACTGGGAAAAGAAG+TGG + chr4_2:55675857-55675876 Msa0608520:CDS 40.0%
AAGACACTGGGAAAAGAAGT+GGG + chr4_2:55675858-55675877 Msa0608520:CDS 40.0%
! ACTAACCTGAAGCATTCCAA+GGG - chr4_2:55675920-55675939 None:intergenic 40.0%
! TACTAACCTGAAGCATTCCA+AGG - chr4_2:55675921-55675940 None:intergenic 40.0%
TTCTTGAGCGTGAAACTGTT+AGG + chr4_2:55676135-55676154 Msa0608520:CDS 40.0%
TCTTGAGCGTGAAACTGTTA+GGG + chr4_2:55676136-55676155 Msa0608520:CDS 40.0%
TGTTCTTTGACAAGCCTAGA+AGG + chr4_2:55676165-55676184 Msa0608520:CDS 40.0%
GTTCTTTGACAAGCCTAGAA+GGG + chr4_2:55676166-55676185 Msa0608520:CDS 40.0%
AGATCCATCCCTGATTATTG+TGG + chr4_2:55676215-55676234 Msa0608520:CDS 40.0%
GATCCATCCCTGATTATTGT+GGG + chr4_2:55676216-55676235 Msa0608520:CDS 40.0%
CAACATAATCAACAGGCTGT+GGG - chr4_2:55676313-55676332 None:intergenic 40.0%
TCAACATAATCAACAGGCTG+TGG - chr4_2:55676314-55676333 None:intergenic 40.0%
! AGCCTGTTGATTATGTTGAG+TGG + chr4_2:55676315-55676334 Msa0608520:CDS 40.0%
TGCCACTCAACATAATCAAC+AGG - chr4_2:55676320-55676339 None:intergenic 40.0%
! TTTCTGGTAAGCAACCTTCA+TGG - chr4_2:55676367-55676386 None:intergenic 40.0%
GTCTGTATAATGCACAACCA+TGG - chr4_2:55676427-55676446 None:intergenic 40.0%
!! AATATTCTGAGACTTGGCCT+CGG - chr4_2:55676591-55676610 None:intergenic 40.0%
!! CGTCGACTTGTAGATATTTC+AGG + chr4_2:55676668-55676687 Msa0608520:three_prime_UTR 40.0%
TGACTGATTATTGTGGTGGT+AGG + chr4_2:55676738-55676757 Msa0608520:three_prime_UTR 40.0%
! CACTGTCATTTAACGAGTCC+GGG - chr4_2:55673478-55673497 None:intergenic 45.0%
! CCACTGTCATTTAACGAGTC+CGG - chr4_2:55673479-55673498 None:intergenic 45.0%
GTGTCTCTCCTTCTCTTTCA+TGG - chr4_2:55673640-55673659 None:intergenic 45.0%
GAAAGAGAAGGAGAGACACA+TGG + chr4_2:55673641-55673660 Msa0608520:CDS 45.0%
ATTCTATAGGATGGGAGCCT+TGG + chr4_2:55673873-55673892 Msa0608520:intron 45.0%
TAACAGTTGAGCTAGTTCCC+CGG - chr4_2:55673907-55673926 None:intergenic 45.0%
AGGTTTAGTCAGAGGACTGA+TGG - chr4_2:55673955-55673974 None:intergenic 45.0%
ATCAGTCCTCTGACTAAACC+TGG + chr4_2:55673954-55673973 Msa0608520:CDS 45.0%
TCAGTCCTCTGACTAAACCT+GGG + chr4_2:55673955-55673974 Msa0608520:CDS 45.0%
GTGGAGTGATAAGAAGGTTG+AGG - chr4_2:55674151-55674170 None:intergenic 45.0%
! TACACTTTGGGAATTGGGTG+GGG - chr4_2:55674639-55674658 None:intergenic 45.0%
! GATACACTTTGGGAATTGGG+TGG - chr4_2:55674641-55674660 None:intergenic 45.0%
GAGCTCGAGTGATACACTTT+GGG - chr4_2:55674651-55674670 None:intergenic 45.0%
AGAGCTCGAGTGATACACTT+TGG - chr4_2:55674652-55674671 None:intergenic 45.0%
AAAGTGTATCACTCGAGCTC+TGG + chr4_2:55674651-55674670 Msa0608520:intron 45.0%
GGAACAACTAACCACTCAAG+TGG - chr4_2:55674872-55674891 None:intergenic 45.0%
! CGAAAGTATGACCTAGTGAC+TGG - chr4_2:55675347-55675366 None:intergenic 45.0%
GCCATGCCTGAGCTATTTAA+AGG - chr4_2:55675399-55675418 None:intergenic 45.0%
GATATGGATCACAACGCTGT+AGG + chr4_2:55675453-55675472 Msa0608520:CDS 45.0%
! AGTCCCACAGTGCACATTTT+GGG - chr4_2:55675683-55675702 None:intergenic 45.0%
! CGAGCTTTTGGCAAAAAGTG+AGG + chr4_2:55675758-55675777 Msa0608520:CDS 45.0%
! AAGACTCCAATTTTGCGACC+TGG + chr4_2:55675789-55675808 Msa0608520:CDS 45.0%
TCTTTCACATCAATGCCACC+AGG - chr4_2:55675810-55675829 None:intergenic 45.0%
!! GGTGGCATTGATGTGAAAGA+CGG + chr4_2:55675810-55675829 Msa0608520:CDS 45.0%
GCAAGAACAGCAGCAAACAA+AGG - chr4_2:55675837-55675856 None:intergenic 45.0%
TGCTGTTCTTGCAAAGACAC+TGG + chr4_2:55675845-55675864 Msa0608520:CDS 45.0%
GCTGTTCTTGCAAAGACACT+GGG + chr4_2:55675846-55675865 Msa0608520:CDS 45.0%
AAGCAGCACCTTCACACTTA+GGG - chr4_2:55675887-55675906 None:intergenic 45.0%
! CTAACCTGAAGCATTCCAAG+GGG - chr4_2:55675919-55675938 None:intergenic 45.0%
AACCACGCCCACAATAATCA+GGG - chr4_2:55676226-55676245 None:intergenic 45.0%
TTGGCATGAATCAAGGAAGC+AGG + chr4_2:55676244-55676263 Msa0608520:CDS 45.0%
ATCAAGGAAGCAGGTGATGA+AGG + chr4_2:55676253-55676272 Msa0608520:CDS 45.0%
AAGCAGGTGATGAAGGAACA+TGG + chr4_2:55676260-55676279 Msa0608520:CDS 45.0%
AGCAGGTGATGAAGGAACAT+GGG + chr4_2:55676261-55676280 Msa0608520:CDS 45.0%
! GATTTTCCATCATCTGGCGA+CGG - chr4_2:55676554-55676573 None:intergenic 45.0%
ATCTGTCAAGGGAAAAACCG+AGG + chr4_2:55676571-55676590 Msa0608520:CDS 45.0%
GAGGCCAAGTCTCAGAATAT+TGG + chr4_2:55676590-55676609 Msa0608520:CDS 45.0%
!! CAGGCCAATATTCTGAGACT+TGG - chr4_2:55676597-55676616 None:intergenic 45.0%
CATACTCTTGCATGCTGAGT+TGG + chr4_2:55676765-55676784 Msa0608520:three_prime_UTR 45.0%
!! ATATATATATATATATATAG+GGG - chr4_2:55674215-55674234 None:intergenic 5.0%
!! ATATATATATATATATATGT+CGG + chr4_2:55674283-55674302 Msa0608520:intron 5.0%
TTCAAACAAATCGCCGCCGA+GGG + chr4_2:55673263-55673282 Msa0608520:five_prime_UTR 50.0%
TGGAATGAGAACCCTACCCT+CGG - chr4_2:55673282-55673301 None:intergenic 50.0%
ATATACCTTGAGGCGGTTGC+AGG - chr4_2:55673318-55673337 None:intergenic 50.0%
CCGGACTCGTTAAATGACAG+TGG + chr4_2:55673476-55673495 Msa0608520:intron 50.0%
TGCATCAGTTGCTTCGAGAG+TGG + chr4_2:55673751-55673770 Msa0608520:CDS 50.0%
TCAGTTGCTTCGAGAGTGGA+AGG + chr4_2:55673755-55673774 Msa0608520:CDS 50.0%
AACAGTTGAGCTAGTTCCCC+GGG - chr4_2:55673906-55673925 None:intergenic 50.0%
AACAGCCCAGGTTTAGTCAG+AGG - chr4_2:55673963-55673982 None:intergenic 50.0%
TAGGGGTTATACGGATGGCT+TGG - chr4_2:55674198-55674217 None:intergenic 50.0%
AAGACCGCACACCACATGAT+AGG - chr4_2:55674546-55674565 None:intergenic 50.0%
TTGGGAATTGGGTGGGGTTA+TGG - chr4_2:55674633-55674652 None:intergenic 50.0%
CACAACTCTCTGAGCACCAA+TGG - chr4_2:55674823-55674842 None:intergenic 50.0%
! GCTGATGGATGGCTAGCTAT+GGG - chr4_2:55675086-55675105 None:intergenic 50.0%
! AGCTGATGGATGGCTAGCTA+TGG - chr4_2:55675087-55675106 None:intergenic 50.0%
TTACTTCTGCGTTGTACCCG+AGG - chr4_2:55675512-55675531 None:intergenic 50.0%
CTAGGAAAGCAGAAGGTGGA+GGG - chr4_2:55675659-55675678 None:intergenic 50.0%
! TTTGGGGCTAGGAAAGCAGA+AGG - chr4_2:55675666-55675685 None:intergenic 50.0%
!!! ACAGTGCACATTTTGGGGCT+AGG - chr4_2:55675677-55675696 None:intergenic 50.0%
TAGCCCCAAAATGTGCACTG+TGG + chr4_2:55675676-55675695 Msa0608520:CDS 50.0%
AGCCCCAAAATGTGCACTGT+GGG + chr4_2:55675677-55675696 Msa0608520:CDS 50.0%
! GTCCCACAGTGCACATTTTG+GGG - chr4_2:55675682-55675701 None:intergenic 50.0%
! CAGTCCCACAGTGCACATTT+TGG - chr4_2:55675684-55675703 None:intergenic 50.0%
ACTGTTTCAGGCCTGCTCAA+GGG + chr4_2:55675700-55675719 Msa0608520:CDS 50.0%
! ACTCCAATTTTGCGACCTGG+TGG + chr4_2:55675792-55675811 Msa0608520:CDS 50.0%
ATGCCACCAGGTCGCAAAAT+TGG - chr4_2:55675798-55675817 None:intergenic 50.0%
GAAGCAGCACCTTCACACTT+AGG - chr4_2:55675888-55675907 None:intergenic 50.0%
AAAGCCCCTTGGAATGCTTC+AGG + chr4_2:55675912-55675931 Msa0608520:CDS 50.0%
AGCGTGAAACTGTTAGGGAG+TGG + chr4_2:55676141-55676160 Msa0608520:CDS 50.0%
CCAGAGTCAAATGCCCTTCT+AGG - chr4_2:55676182-55676201 None:intergenic 50.0%
!! CCTAGAAGGGCATTTGACTC+TGG + chr4_2:55676179-55676198 Msa0608520:CDS 50.0%
!! GGGCATTTGACTCTGGAACT+AGG + chr4_2:55676186-55676205 Msa0608520:CDS 50.0%
ACGCCCACAATAATCAGGGA+TGG - chr4_2:55676222-55676241 None:intergenic 50.0%
ATCCCTGATTATTGTGGGCG+TGG + chr4_2:55676221-55676240 Msa0608520:CDS 50.0%
CAACCACGCCCACAATAATC+AGG - chr4_2:55676227-55676246 None:intergenic 50.0%
CTGATTATTGTGGGCGTGGT+TGG + chr4_2:55676225-55676244 Msa0608520:CDS 50.0%
GCAGGTGATGAAGGAACATG+GGG + chr4_2:55676262-55676281 Msa0608520:CDS 50.0%
CAGGTGATGAAGGAACATGG+GGG + chr4_2:55676263-55676282 Msa0608520:CDS 50.0%
CAAGTCGACGACCAGTCATT+TGG - chr4_2:55676658-55676677 None:intergenic 50.0%
TCAGGATGGGGTTCAGATTG+TGG + chr4_2:55676686-55676705 Msa0608520:three_prime_UTR 50.0%
CTTCAAACAAATCGCCGCCG+AGG + chr4_2:55673262-55673281 Msa0608520:five_prime_UTR 55.0%
AATGAGAACCCTACCCTCGG+CGG - chr4_2:55673279-55673298 None:intergenic 55.0%
GGGTAGGGTTCTCATTCCAC+CGG + chr4_2:55673283-55673302 Msa0608520:five_prime_UTR 55.0%
TTGCAGGAAGGTTGTTCCGG+TGG - chr4_2:55673302-55673321 None:intergenic 55.0%
CGGTTGCAGGAAGGTTGTTC+CGG - chr4_2:55673305-55673324 None:intergenic 55.0%
ACAGTTGAGCTAGTTCCCCG+GGG - chr4_2:55673905-55673924 None:intergenic 55.0%
!! TACGGATGGCTTGGTGGCTA+GGG - chr4_2:55674189-55674208 None:intergenic 55.0%
!! ATACGGATGGCTTGGTGGCT+AGG - chr4_2:55674190-55674209 None:intergenic 55.0%
! GGGTTATACGGATGGCTTGG+TGG - chr4_2:55674195-55674214 None:intergenic 55.0%
TAGCTCAGGCATGGCTCAGT+TGG + chr4_2:55675404-55675423 Msa0608520:CDS 55.0%
ATTTGTCGGGACCACAGCCT+CGG + chr4_2:55675492-55675511 Msa0608520:CDS 55.0%
GAAGGTGGAGGGCGGATATT+TGG - chr4_2:55675648-55675667 None:intergenic 55.0%
GCTAGGAAAGCAGAAGGTGG+AGG - chr4_2:55675660-55675679 None:intergenic 55.0%
GTGCACTGTGGGACTGTTTC+AGG + chr4_2:55675688-55675707 Msa0608520:CDS 55.0%
GACTGTTTCAGGCCTGCTCA+AGG + chr4_2:55675699-55675718 Msa0608520:CDS 55.0%
CACTGCTCTAACCCTTGAGC+AGG - chr4_2:55675714-55675733 None:intergenic 55.0%
GTGGGCATCCCTAAGTGTGA+AGG + chr4_2:55675876-55675895 Msa0608520:CDS 55.0%
CTGCTTCAACGAAAGCCCCT+TGG + chr4_2:55675901-55675920 Msa0608520:CDS 55.0%
GGCGTGGTTGGCATGAATCA+AGG + chr4_2:55676237-55676256 Msa0608520:CDS 55.0%
AACAAATCGCCGCCGAGGGT+AGG + chr4_2:55673267-55673286 Msa0608520:five_prime_UTR 60.0%
ACAAATCGCCGCCGAGGGTA+GGG + chr4_2:55673268-55673287 Msa0608520:five_prime_UTR 60.0%
ACCTTCCTGCAACCGCCTCA+AGG + chr4_2:55673310-55673329 Msa0608520:five_prime_UTR 60.0%
ACCTTGAGGCGGTTGCAGGA+AGG - chr4_2:55673314-55673333 None:intergenic 60.0%
AGGGTGGGGGAGTTAAGGAG+TGG - chr4_2:55674170-55674189 None:intergenic 60.0%
TGGCTAGGGTGGGGGAGTTA+AGG - chr4_2:55674175-55674194 None:intergenic 60.0%
!! ATGGCTTGGTGGCTAGGGTG+GGG - chr4_2:55674184-55674203 None:intergenic 60.0%
!! GATGGCTTGGTGGCTAGGGT+GGG - chr4_2:55674185-55674204 None:intergenic 60.0%
TTTGTCGGGACCACAGCCTC+GGG + chr4_2:55675493-55675512 Msa0608520:CDS 60.0%
GGAAAGCAGAAGGTGGAGGG+CGG - chr4_2:55675656-55675675 None:intergenic 60.0%
GGGGCTAGGAAAGCAGAAGG+TGG - chr4_2:55675663-55675682 None:intergenic 60.0%
! GGGAGCCTTGGTTCGTTCCC+CGG + chr4_2:55673885-55673904 Msa0608520:CDS 65.0%
! GGAGCCTTGGTTCGTTCCCC+GGG + chr4_2:55673886-55673905 Msa0608520:CDS 65.0%
! GAGCCTTGGTTCGTTCCCCG+GGG + chr4_2:55673887-55673906 Msa0608520:CDS 65.0%
GTTCCCCGGGGAACGAACCA+AGG - chr4_2:55673893-55673912 None:intergenic 65.0%
!! TGGCTTGGTGGCTAGGGTGG+GGG - chr4_2:55674183-55674202 None:intergenic 65.0%
!! GGATGGCTTGGTGGCTAGGG+TGG - chr4_2:55674186-55674205 None:intergenic 65.0%
CTGCGTTGTACCCGAGGCTG+TGG - chr4_2:55675506-55675525 None:intergenic 65.0%
GCTGCTCCGTCGCCAGATGA+TGG + chr4_2:55676545-55676564 Msa0608520:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55673203 55676903 55673203 ID=Msa0608520;Name=Msa0608520
chr4_2 mRNA 55673203 55676903 55673203 ID=Msa0608520-mRNA-1;Parent=Msa0608520;Name=Msa0608520-mRNA-1;_AED=0.03;_eAED=0.03;_QI=135|1|1|1|0.75|0.6|5|275|500
chr4_2 exon 55673203 55673331 55673203 ID=Msa0608520-mRNA-1:exon:14182;Parent=Msa0608520-mRNA-1
chr4_2 exon 55673579 55673809 55673579 ID=Msa0608520-mRNA-1:exon:14183;Parent=Msa0608520-mRNA-1
chr4_2 exon 55673882 55674040 55673882 ID=Msa0608520-mRNA-1:exon:14184;Parent=Msa0608520-mRNA-1
chr4_2 exon 55675327 55675933 55675327 ID=Msa0608520-mRNA-1:exon:14185;Parent=Msa0608520-mRNA-1
chr4_2 exon 55676117 55676903 55676117 ID=Msa0608520-mRNA-1:exon:14186;Parent=Msa0608520-mRNA-1
chr4_2 five_prime_UTR 55673203 55673331 55673203 ID=Msa0608520-mRNA-1:five_prime_utr;Parent=Msa0608520-mRNA-1
chr4_2 five_prime_UTR 55673579 55673584 55673579 ID=Msa0608520-mRNA-1:five_prime_utr;Parent=Msa0608520-mRNA-1
chr4_2 CDS 55673585 55673809 55673585 ID=Msa0608520-mRNA-1:cds;Parent=Msa0608520-mRNA-1
chr4_2 CDS 55673882 55674040 55673882 ID=Msa0608520-mRNA-1:cds;Parent=Msa0608520-mRNA-1
chr4_2 CDS 55675327 55675933 55675327 ID=Msa0608520-mRNA-1:cds;Parent=Msa0608520-mRNA-1
chr4_2 CDS 55676117 55676628 55676117 ID=Msa0608520-mRNA-1:cds;Parent=Msa0608520-mRNA-1
chr4_2 three_prime_UTR 55676629 55676903 55676629 ID=Msa0608520-mRNA-1:three_prime_utr;Parent=Msa0608520-mRNA-1
Gene Sequence

>Msa0608520

ATGATGAAAGAAAACTCAGGGGGAAAATATGGATCTTCTTCTTCTCAGAAATCCATGAAAGAGAAGGAGAGACACATGGTGAATAAGATTCAAGGGATTTTCACCAATCTTCAGTCTGCAAGAAAGGAAAGCAGAGCTACTGATATTCTCATCATTGAGGAGCAGATGCATCAGTTGCTTCGAGAGTGGAAGGCAGAACTCGAGTCTCCAGCTACCTCCTTAAATGATGGGAGCCTTGGTTCGTTCCCCGGGGAACTAGCTCAACTGTTACAAGGATTTGAGGAGAAAGACGACGCCATCAGTCCTCTGACTAAACCTGGGCTGTTTAACACTGATTACCATCAAAATAACATTACTGATAGCAATTATGAGTTTTATCAGGAGAAATGTTTTGATAATAACCAGTCACTAGGTCATACTTTCGAAGGCTCTGCTTCAACTCTGTTCAGCAGTCCTTTAAATAGCTCAGGCATGGCTCAGTTGGATTTTCATTCATTCGGTTTGAATCAAGATATGGATCACAACGCTGTAGGTCACAGCTCTGATTTAATTTGTCGGGACCACAGCCTCGGGTACAACGCAGAAGTAAAAAACTCAGAATCAGCTAAATTTAATCTTGAAGAAGGCTTTGATGAGTATGATCAACTTTTCGGAGATAATTACACCACAAATTTTGGAGACAACTTTATACCTAATATTCTTCCAAATATCCGCCCTCCACCTTCTGCTTTCCTAGCCCCAAAATGTGCACTGTGGGACTGTTTCAGGCCTGCTCAAGGGTTAGAGCAGTGCCAGAATTACTGTAGTAGTAATCACGAGCTTTTGGCAAAAAGTGAGGATGAGGGCAAGACTCCAATTTTGCGACCTGGTGGCATTGATGTGAAAGACGGTCCTTTGTTTGCTGCTGTTCTTGCAAAGACACTGGGAAAAGAAGTGGGCATCCCTAAGTGTGAAGGTGCTGCTTCAACGAAAGCCCCTTGGAATGCTTCAGAGTTGTTTGACATTTCTCTTCTTGAGCGTGAAACTGTTAGGGAGTGGCTGTTCTTTGACAAGCCTAGAAGGGCATTTGACTCTGGAACTAGGAAACAGAGATCCATCCCTGATTATTGTGGGCGTGGTTGGCATGAATCAAGGAAGCAGGTGATGAAGGAACATGGGGGACAAAAGAGATCATATTACATGGACCCACAGCCTGTTGATTATGTTGAGTGGCATTTGTACGAGTATGAAATCAATAACCATGAAGGTTGCTTACCAGAAAAAAATAACCATGATCGTTGCTTATCAACAAAAATTAACCATGGTTGTGCATTATACAGACTAGAATTAAAGCGTGTAGATAAAAAAAAAAGTCCTAAAGGAAAAGTGACTAAGGAATCACTTGCTGATTTACAAAACAAGATGGGAAAGCTAACTGCTGCTGCTCCGTCGCCAGATGATGGAAAATCTGTCAAGGGAAAAACCGAGGCCAAGTCTCAGAATATTGGCCTGCCTGAATATTAA
Protein sequence

>Msa0608520

MMKENSGGKYGSSSSQKSMKEKERHMVNKIQGIFTNLQSARKESRATDILIIEEQMHQLLREWKAELESPATSLNDGSLGSFPGELAQLLQGFEEKDDAISPLTKPGLFNTDYHQNNITDSNYEFYQEKCFDNNQSLGHTFEGSASTLFSSPLNSSGMAQLDFHSFGLNQDMDHNAVGHSSDLICRDHSLGYNAEVKNSESAKFNLEEGFDEYDQLFGDNYTTNFGDNFIPNILPNIRPPPSAFLAPKCALWDCFRPAQGLEQCQNYCSSNHELLAKSEDEGKTPILRPGGIDVKDGPLFAAVLAKTLGKEVGIPKCEGAASTKAPWNASELFDISLLERETVREWLFFDKPRRAFDSGTRKQRSIPDYCGRGWHESRKQVMKEHGGQKRSYYMDPQPVDYVEWHLYEYEINNHEGCLPEKNNHDRCLSTKINHGCALYRLELKRVDKKKSPKGKVTKESLADLQNKMGKLTAAAPSPDDGKSVKGKTEAKSQNIGLPEY*