Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609680 | AES89938.1 | 89.744 | 273 | 28 | 0 | 1 | 273 | 1 | 273 | 5.51e-170 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609680 | sp|Q9FXA3|BH095_ARATH | 31.474 | 251 | 108 | 6 | 73 | 267 | 59 | 301 | 2.42e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0609680 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609680 | MtrunA17_Chr4g0042511 | 89.300 | 243 | 26 | 0 | 1 | 243 | 1 | 243 | 4.09e-151 | 422 |
| Msa0609680 | MtrunA17_Chr4g0044621 | 46.429 | 308 | 116 | 9 | 1 | 267 | 1 | 300 | 1.60e-61 | 196 |
| Msa0609680 | MtrunA17_Chr4g0044611 | 47.312 | 279 | 110 | 8 | 1 | 243 | 1 | 278 | 1.61e-59 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609680 | AT1G49770.1 | 31.474 | 251 | 108 | 6 | 73 | 267 | 59 | 301 | 2.46e-25 | 102 |
Find 40 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCCATTTCTACATTT+TGG | 0.093907 | 4_2:-57087046 | None:intergenic |
| CCTCCACTGAAATTGCATTT+TGG | 0.191221 | 4_2:-57089297 | None:intergenic |
| TGACTTTAGATGATGATAAA+TGG | 0.249362 | 4_2:+57086925 | Msa0609680:CDS |
| AGCTAGCAGCAGGAGAAATT+AGG | 0.262683 | 4_2:+57089329 | Msa0609680:CDS |
| TTCATCTCCGCAAATGTTAA+AGG | 0.277405 | 4_2:-57088196 | None:intergenic |
| AATGGTTCTTTGTTCTCATT+TGG | 0.286563 | 4_2:-57087005 | None:intergenic |
| GCTAGCAGCAGGAGAAATTA+GGG | 0.297310 | 4_2:+57089330 | Msa0609680:CDS |
| CTCATTGATTCAATGTCTAA+TGG | 0.319505 | 4_2:-57087023 | None:intergenic |
| AACATCTTGTGCAATGATAA+TGG | 0.343823 | 4_2:+57088312 | Msa0609680:CDS |
| CACATTGCTTCTTATTCACT+AGG | 0.390758 | 4_2:-57087073 | None:intergenic |
| ATTTGAAACTTACATGGGCT+TGG | 0.392532 | 4_2:-57088350 | None:intergenic |
| AATGAGCCAAAATGTAGAAA+TGG | 0.410797 | 4_2:+57087040 | Msa0609680:CDS |
| AATGTTACCTTTAACATTTG+CGG | 0.450475 | 4_2:+57088189 | Msa0609680:CDS |
| GATTCCTCATCTTACTTACA+AGG | 0.453723 | 4_2:+57087250 | Msa0609680:CDS |
| AAAACAAACTCTTGAAAAGC+TGG | 0.453918 | 4_2:+57088038 | Msa0609680:CDS |
| GATGAGGAATCAAATCTTGA+AGG | 0.457081 | 4_2:-57087238 | None:intergenic |
| ATTTGGTTTATCAGAAATGA+AGG | 0.457704 | 4_2:-57086988 | None:intergenic |
| AAAATTGTTGTCAACAAGCC+TGG | 0.495164 | 4_2:-57088249 | None:intergenic |
| ATGTGTGAAAATCAATCATC+GGG | 0.496092 | 4_2:+57086963 | Msa0609680:CDS |
| TAAGAAGCAATGTGAGGGAG+GGG | 0.496799 | 4_2:+57087082 | Msa0609680:CDS |
| ATTATCATTGCACAAGATGT+TGG | 0.497659 | 4_2:-57088310 | None:intergenic |
| ATGCACGTGCTGAGAGAGAA+AGG | 0.501549 | 4_2:+57087186 | Msa0609680:CDS |
| GAAAGTTACAAGCTAGCAGC+AGG | 0.519236 | 4_2:+57089319 | Msa0609680:CDS |
| AATAAGAAGCAATGTGAGGG+AGG | 0.525488 | 4_2:+57087080 | Msa0609680:CDS |
| ACATTGCTTCTTATTCACTA+GGG | 0.529713 | 4_2:-57087072 | None:intergenic |
| TTTGGTTTATCAGAAATGAA+GGG | 0.532763 | 4_2:-57086987 | None:intergenic |
| CATGTGTGAAAATCAATCAT+CGG | 0.538236 | 4_2:+57086962 | Msa0609680:CDS |
| CTTCACTGCTTCCTCCACAA+TGG | 0.569321 | 4_2:-57088001 | None:intergenic |
| TTTATCATCATCTAAAGTCA+TGG | 0.573233 | 4_2:-57086922 | None:intergenic |
| ATAAGAAGCAATGTGAGGGA+GGG | 0.586200 | 4_2:+57087081 | Msa0609680:CDS |
| TTGGTTTATCAGAAATGAAG+GGG | 0.597449 | 4_2:-57086986 | None:intergenic |
| TTTACCTTGTAAGTAAGATG+AGG | 0.598129 | 4_2:-57087254 | None:intergenic |
| GTGAATAAGAAGCAATGTGA+GGG | 0.611245 | 4_2:+57087077 | Msa0609680:CDS |
| CCAAAATGCAATTTCAGTGG+AGG | 0.613831 | 4_2:+57089297 | Msa0609680:CDS |
| AAGCCAAAATGCAATTTCAG+TGG | 0.614102 | 4_2:+57089294 | Msa0609680:CDS |
| ATATACACAACTAAGAAGCC+AGG | 0.619168 | 4_2:+57088231 | Msa0609680:CDS |
| GGTAGATTCTGTAACCATTG+TGG | 0.628284 | 4_2:+57087987 | Msa0609680:intron |
| AGATTCTGTAACCATTGTGG+AGG | 0.646571 | 4_2:+57087990 | Msa0609680:CDS |
| CTAGCAGCAGGAGAAATTAG+GGG | 0.652318 | 4_2:+57089331 | Msa0609680:CDS |
| AGTGAATAAGAAGCAATGTG+AGG | 0.680971 | 4_2:+57087076 | Msa0609680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATGTTAAAAATGATA+AGG | + | chr4_2:57087124-57087143 | Msa0609680:CDS | 10.0% |
| !! | TTAAATGTTAAAAATGATAA+GGG | + | chr4_2:57087125-57087144 | Msa0609680:CDS | 10.0% |
| !!! | AGTTTTTCATTTTTTTTTTT+TGG | - | chr4_2:57089155-57089174 | None:intergenic | 10.0% |
| !! | TTTAAATGTTAAAAATGATA+AGG | + | chr4_2:57087124-57087143 | Msa0609680:CDS | 10.0% |
| !! | TTAAATGTTAAAAATGATAA+GGG | + | chr4_2:57087125-57087144 | Msa0609680:CDS | 10.0% |
| !!! | AGTTTTTCATTTTTTTTTTT+TGG | - | chr4_2:57089155-57089174 | None:intergenic | 10.0% |
| !! | TAAATGTTAAAAATGATAAG+GGG | + | chr4_2:57087126-57087145 | Msa0609680:CDS | 15.0% |
| !!! | ATTACATTCATTTTTAAGAT+TGG | + | chr4_2:57087280-57087299 | Msa0609680:intron | 15.0% |
| !!! | ACAAAATTTTCATTGAAAAA+TGG | - | chr4_2:57087325-57087344 | None:intergenic | 15.0% |
| !! | AAAATTGAAAGGATAAAATT+AGG | - | chr4_2:57087404-57087423 | None:intergenic | 15.0% |
| !! | CTTTAACTAAATTCAAATAT+GGG | + | chr4_2:57087683-57087702 | Msa0609680:intron | 15.0% |
| !!! | TAGTAATTTAAAATTTAGAC+TGG | - | chr4_2:57087749-57087768 | None:intergenic | 15.0% |
| !!! | GTCTAAATTTTAAATTACTA+AGG | + | chr4_2:57087749-57087768 | Msa0609680:intron | 15.0% |
| !! | TAATACAACAAAAAAAAGTT+TGG | + | chr4_2:57087798-57087817 | Msa0609680:intron | 15.0% |
| !! | AATACAACAAAAAAAAGTTT+GGG | + | chr4_2:57087799-57087818 | Msa0609680:intron | 15.0% |
| !! | CACAAAAAAAAAAAAAAAGT+TGG | - | chr4_2:57089054-57089073 | None:intergenic | 15.0% |
| !! | TAAATGTTAAAAATGATAAG+GGG | + | chr4_2:57087126-57087145 | Msa0609680:CDS | 15.0% |
| !!! | ATTACATTCATTTTTAAGAT+TGG | + | chr4_2:57087280-57087299 | Msa0609680:intron | 15.0% |
| !!! | ACAAAATTTTCATTGAAAAA+TGG | - | chr4_2:57087325-57087344 | None:intergenic | 15.0% |
| !! | AAAATTGAAAGGATAAAATT+AGG | - | chr4_2:57087404-57087423 | None:intergenic | 15.0% |
| !! | CTTTAACTAAATTCAAATAT+GGG | + | chr4_2:57087683-57087702 | Msa0609680:intron | 15.0% |
| !!! | TAGTAATTTAAAATTTAGAC+TGG | - | chr4_2:57087749-57087768 | None:intergenic | 15.0% |
| !!! | GTCTAAATTTTAAATTACTA+AGG | + | chr4_2:57087749-57087768 | Msa0609680:intron | 15.0% |
| !! | TAATACAACAAAAAAAAGTT+TGG | + | chr4_2:57087798-57087817 | Msa0609680:intron | 15.0% |
| !! | AATACAACAAAAAAAAGTTT+GGG | + | chr4_2:57087799-57087818 | Msa0609680:intron | 15.0% |
| !! | CACAAAAAAAAAAAAAAAGT+TGG | - | chr4_2:57089054-57089073 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTCTTTGTACCA+TGG | + | chr4_2:57087506-57087525 | Msa0609680:intron | 20.0% |
| !! | GCTTTAACTAAATTCAAATA+TGG | + | chr4_2:57087682-57087701 | Msa0609680:intron | 20.0% |
| !!! | TAATTTAAAATTTAGACTGG+AGG | - | chr4_2:57087746-57087765 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTATTAATTCGT+TGG | - | chr4_2:57087792-57087811 | None:intergenic | 20.0% |
| !!! | TGCTTTGTATTTAATTTCTT+TGG | + | chr4_2:57087962-57087981 | Msa0609680:intron | 20.0% |
| !!! | ATTGAATTTGAAACTTACAT+GGG | - | chr4_2:57088358-57088377 | None:intergenic | 20.0% |
| !!! | AATTGAATTTGAAACTTACA+TGG | - | chr4_2:57088359-57088378 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAGGTTTGTTTA+CGG | - | chr4_2:57088982-57089001 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTCTTTGTACCA+TGG | + | chr4_2:57087506-57087525 | Msa0609680:intron | 20.0% |
| !! | GCTTTAACTAAATTCAAATA+TGG | + | chr4_2:57087682-57087701 | Msa0609680:intron | 20.0% |
| !!! | TAATTTAAAATTTAGACTGG+AGG | - | chr4_2:57087746-57087765 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTATTAATTCGT+TGG | - | chr4_2:57087792-57087811 | None:intergenic | 20.0% |
| !!! | TGCTTTGTATTTAATTTCTT+TGG | + | chr4_2:57087962-57087981 | Msa0609680:intron | 20.0% |
| !!! | ATTGAATTTGAAACTTACAT+GGG | - | chr4_2:57088358-57088377 | None:intergenic | 20.0% |
| !!! | AATTGAATTTGAAACTTACA+TGG | - | chr4_2:57088359-57088378 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAGGTTTGTTTA+CGG | - | chr4_2:57088982-57089001 | None:intergenic | 20.0% |
| !! | TTTATCATCATCTAAAGTCA+TGG | - | chr4_2:57086925-57086944 | None:intergenic | 25.0% |
| ! | TGACTTTAGATGATGATAAA+TGG | + | chr4_2:57086925-57086944 | Msa0609680:CDS | 25.0% |
| !! | TTTGGTTTATCAGAAATGAA+GGG | - | chr4_2:57086990-57087009 | None:intergenic | 25.0% |
| !! | ATTTGGTTTATCAGAAATGA+AGG | - | chr4_2:57086991-57087010 | None:intergenic | 25.0% |
| !! | ATCAAAATTGAATCGATTCA+TGG | - | chr4_2:57087651-57087670 | None:intergenic | 25.0% |
| !!! | ATGAATCGATTCAATTTTGA+TGG | + | chr4_2:57087650-57087669 | Msa0609680:intron | 25.0% |
| !!! | ATGAATAATCGGTTTGAAAT+AGG | - | chr4_2:57087863-57087882 | None:intergenic | 25.0% |
| ! | ATTAAATCAATGTTACACCT+AGG | - | chr4_2:57087934-57087953 | None:intergenic | 25.0% |
| !! | TTGTATTTAATTTCTTTGGC+AGG | + | chr4_2:57087966-57087985 | Msa0609680:intron | 25.0% |
| ! | AATGTTACCTTTAACATTTG+CGG | + | chr4_2:57088189-57088208 | Msa0609680:CDS | 25.0% |
| ! | TCAATCTATATGCTATGTTA+CGG | - | chr4_2:57088532-57088551 | None:intergenic | 25.0% |
| !! | CATTTCTTTTGACAAAAAAG+AGG | + | chr4_2:57088623-57088642 | Msa0609680:intron | 25.0% |
| !! | CATGGATCTTTATTTAAGAA+AGG | + | chr4_2:57088812-57088831 | Msa0609680:intron | 25.0% |
| !!! | TGTCATGAAAAGTTTTATTG+CGG | + | chr4_2:57088839-57088858 | Msa0609680:intron | 25.0% |
| !! | TAAACTTTAGGTTTGTTTAC+GGG | - | chr4_2:57088981-57089000 | None:intergenic | 25.0% |
| !! | TTAGCAAAATACTTTTCTTC+TGG | - | chr4_2:57089019-57089038 | None:intergenic | 25.0% |
| ! | TTATTTCATTATCCACAATG+TGG | + | chr4_2:57089214-57089233 | Msa0609680:intron | 25.0% |
| !! | TTTATCATCATCTAAAGTCA+TGG | - | chr4_2:57086925-57086944 | None:intergenic | 25.0% |
| ! | TGACTTTAGATGATGATAAA+TGG | + | chr4_2:57086925-57086944 | Msa0609680:CDS | 25.0% |
| !! | TTTGGTTTATCAGAAATGAA+GGG | - | chr4_2:57086990-57087009 | None:intergenic | 25.0% |
| !! | ATTTGGTTTATCAGAAATGA+AGG | - | chr4_2:57086991-57087010 | None:intergenic | 25.0% |
| !! | ATCAAAATTGAATCGATTCA+TGG | - | chr4_2:57087651-57087670 | None:intergenic | 25.0% |
| !!! | ATGAATCGATTCAATTTTGA+TGG | + | chr4_2:57087650-57087669 | Msa0609680:intron | 25.0% |
| !!! | ATGAATAATCGGTTTGAAAT+AGG | - | chr4_2:57087863-57087882 | None:intergenic | 25.0% |
| ! | ATTAAATCAATGTTACACCT+AGG | - | chr4_2:57087934-57087953 | None:intergenic | 25.0% |
| !! | TTGTATTTAATTTCTTTGGC+AGG | + | chr4_2:57087966-57087985 | Msa0609680:intron | 25.0% |
| ! | AATGTTACCTTTAACATTTG+CGG | + | chr4_2:57088189-57088208 | Msa0609680:CDS | 25.0% |
| ! | TCAATCTATATGCTATGTTA+CGG | - | chr4_2:57088532-57088551 | None:intergenic | 25.0% |
| !! | CATTTCTTTTGACAAAAAAG+AGG | + | chr4_2:57088623-57088642 | Msa0609680:intron | 25.0% |
| !! | CATGGATCTTTATTTAAGAA+AGG | + | chr4_2:57088812-57088831 | Msa0609680:intron | 25.0% |
| !!! | TGTCATGAAAAGTTTTATTG+CGG | + | chr4_2:57088839-57088858 | Msa0609680:intron | 25.0% |
| !! | TAAACTTTAGGTTTGTTTAC+GGG | - | chr4_2:57088981-57089000 | None:intergenic | 25.0% |
| !! | TTAGCAAAATACTTTTCTTC+TGG | - | chr4_2:57089019-57089038 | None:intergenic | 25.0% |
| ! | TTATTTCATTATCCACAATG+TGG | + | chr4_2:57089214-57089233 | Msa0609680:intron | 25.0% |
| CATGTGTGAAAATCAATCAT+CGG | + | chr4_2:57086962-57086981 | Msa0609680:CDS | 30.0% | |
| ATGTGTGAAAATCAATCATC+GGG | + | chr4_2:57086963-57086982 | Msa0609680:CDS | 30.0% | |
| TTGGTTTATCAGAAATGAAG+GGG | - | chr4_2:57086989-57087008 | None:intergenic | 30.0% | |
| AATGGTTCTTTGTTCTCATT+TGG | - | chr4_2:57087008-57087027 | None:intergenic | 30.0% | |
| !! | CTCATTGATTCAATGTCTAA+TGG | - | chr4_2:57087026-57087045 | None:intergenic | 30.0% |
| AATGAGCCAAAATGTAGAAA+TGG | + | chr4_2:57087040-57087059 | Msa0609680:CDS | 30.0% | |
| ! | CTTCTTCCATTTCTACATTT+TGG | - | chr4_2:57087049-57087068 | None:intergenic | 30.0% |
| ACATTGCTTCTTATTCACTA+GGG | - | chr4_2:57087075-57087094 | None:intergenic | 30.0% | |
| GAGAAAGGAGAAAAAAAATG+AGG | + | chr4_2:57087201-57087220 | Msa0609680:CDS | 30.0% | |
| TTTACCTTGTAAGTAAGATG+AGG | - | chr4_2:57087257-57087276 | None:intergenic | 30.0% | |
| ! | TTTTTCTTGGATGATATCAG+CGG | - | chr4_2:57087576-57087595 | None:intergenic | 30.0% |
| ! | AATGACGTGCAAATTTTTCT+TGG | - | chr4_2:57087589-57087608 | None:intergenic | 30.0% |
| ! | AAAATTGAATCGATTCATGG+AGG | - | chr4_2:57087648-57087667 | None:intergenic | 30.0% |
| ACTAAATTCAAATATGGGCT+TGG | + | chr4_2:57087688-57087707 | Msa0609680:intron | 30.0% | |
| ATGTATATATAGCAACACCT+AGG | + | chr4_2:57087914-57087933 | Msa0609680:intron | 30.0% | |
| AAAACAAACTCTTGAAAAGC+TGG | + | chr4_2:57088038-57088057 | Msa0609680:CDS | 30.0% | |
| ATTATCATTGCACAAGATGT+TGG | - | chr4_2:57088313-57088332 | None:intergenic | 30.0% | |
| AACATCTTGTGCAATGATAA+TGG | + | chr4_2:57088312-57088331 | Msa0609680:CDS | 30.0% | |
| CTAGTACTTGTAGAGTAATT+TGG | + | chr4_2:57088415-57088434 | Msa0609680:intron | 30.0% | |
| TCTTACATACTCTCTTCTAT+TGG | - | chr4_2:57088462-57088481 | None:intergenic | 30.0% | |
| CGGATTTAAACTGTGAATAA+TGG | - | chr4_2:57088512-57088531 | None:intergenic | 30.0% | |
| !! | AGAACTTTTGTGATTTGTGT+CGG | + | chr4_2:57088656-57088675 | Msa0609680:intron | 30.0% |
| TGTGCTCAAAATTAGTGTTT+AGG | + | chr4_2:57088687-57088706 | Msa0609680:intron | 30.0% | |
| GTGCTCAAAATTAGTGTTTA+GGG | + | chr4_2:57088688-57088707 | Msa0609680:intron | 30.0% | |
| TAAGTCTAAATGAGTGACTT+AGG | + | chr4_2:57088713-57088732 | Msa0609680:intron | 30.0% | |
| ! | GTGACTTAGGTTTTCTTTTT+TGG | + | chr4_2:57088726-57088745 | Msa0609680:intron | 30.0% |
| ACTTTGATGTCAATGATCAT+CGG | + | chr4_2:57088777-57088796 | Msa0609680:intron | 30.0% | |
| !! | AAGATAGACGCTTTTTGTTT+AGG | + | chr4_2:57088890-57088909 | Msa0609680:intron | 30.0% |
| GTAGTCAAAGGATAAACTTT+AGG | - | chr4_2:57088993-57089012 | None:intergenic | 30.0% | |
| AAAGTTTATCCTTTGACTAC+TGG | + | chr4_2:57088993-57089012 | Msa0609680:intron | 30.0% | |
| AGTTATTTACATCCACATTG+TGG | - | chr4_2:57089229-57089248 | None:intergenic | 30.0% | |
| !! | TTGATTTGTGTTAATGTTGC+AGG | + | chr4_2:57089252-57089271 | Msa0609680:intron | 30.0% |
| CATGTGTGAAAATCAATCAT+CGG | + | chr4_2:57086962-57086981 | Msa0609680:CDS | 30.0% | |
| ATGTGTGAAAATCAATCATC+GGG | + | chr4_2:57086963-57086982 | Msa0609680:CDS | 30.0% | |
| TTGGTTTATCAGAAATGAAG+GGG | - | chr4_2:57086989-57087008 | None:intergenic | 30.0% | |
| AATGGTTCTTTGTTCTCATT+TGG | - | chr4_2:57087008-57087027 | None:intergenic | 30.0% | |
| !! | CTCATTGATTCAATGTCTAA+TGG | - | chr4_2:57087026-57087045 | None:intergenic | 30.0% |
| AATGAGCCAAAATGTAGAAA+TGG | + | chr4_2:57087040-57087059 | Msa0609680:CDS | 30.0% | |
| ! | CTTCTTCCATTTCTACATTT+TGG | - | chr4_2:57087049-57087068 | None:intergenic | 30.0% |
| ACATTGCTTCTTATTCACTA+GGG | - | chr4_2:57087075-57087094 | None:intergenic | 30.0% | |
| GAGAAAGGAGAAAAAAAATG+AGG | + | chr4_2:57087201-57087220 | Msa0609680:CDS | 30.0% | |
| TTTACCTTGTAAGTAAGATG+AGG | - | chr4_2:57087257-57087276 | None:intergenic | 30.0% | |
| ! | TTTTTCTTGGATGATATCAG+CGG | - | chr4_2:57087576-57087595 | None:intergenic | 30.0% |
| ! | AATGACGTGCAAATTTTTCT+TGG | - | chr4_2:57087589-57087608 | None:intergenic | 30.0% |
| ! | AAAATTGAATCGATTCATGG+AGG | - | chr4_2:57087648-57087667 | None:intergenic | 30.0% |
| ACTAAATTCAAATATGGGCT+TGG | + | chr4_2:57087688-57087707 | Msa0609680:intron | 30.0% | |
| ATGTATATATAGCAACACCT+AGG | + | chr4_2:57087914-57087933 | Msa0609680:intron | 30.0% | |
| AAAACAAACTCTTGAAAAGC+TGG | + | chr4_2:57088038-57088057 | Msa0609680:CDS | 30.0% | |
| ATTATCATTGCACAAGATGT+TGG | - | chr4_2:57088313-57088332 | None:intergenic | 30.0% | |
| AACATCTTGTGCAATGATAA+TGG | + | chr4_2:57088312-57088331 | Msa0609680:CDS | 30.0% | |
| CTAGTACTTGTAGAGTAATT+TGG | + | chr4_2:57088415-57088434 | Msa0609680:intron | 30.0% | |
| TCTTACATACTCTCTTCTAT+TGG | - | chr4_2:57088462-57088481 | None:intergenic | 30.0% | |
| CGGATTTAAACTGTGAATAA+TGG | - | chr4_2:57088512-57088531 | None:intergenic | 30.0% | |
| !! | AGAACTTTTGTGATTTGTGT+CGG | + | chr4_2:57088656-57088675 | Msa0609680:intron | 30.0% |
| TGTGCTCAAAATTAGTGTTT+AGG | + | chr4_2:57088687-57088706 | Msa0609680:intron | 30.0% | |
| GTGCTCAAAATTAGTGTTTA+GGG | + | chr4_2:57088688-57088707 | Msa0609680:intron | 30.0% | |
| TAAGTCTAAATGAGTGACTT+AGG | + | chr4_2:57088713-57088732 | Msa0609680:intron | 30.0% | |
| ! | GTGACTTAGGTTTTCTTTTT+TGG | + | chr4_2:57088726-57088745 | Msa0609680:intron | 30.0% |
| ACTTTGATGTCAATGATCAT+CGG | + | chr4_2:57088777-57088796 | Msa0609680:intron | 30.0% | |
| !! | AAGATAGACGCTTTTTGTTT+AGG | + | chr4_2:57088890-57088909 | Msa0609680:intron | 30.0% |
| GTAGTCAAAGGATAAACTTT+AGG | - | chr4_2:57088993-57089012 | None:intergenic | 30.0% | |
| AAAGTTTATCCTTTGACTAC+TGG | + | chr4_2:57088993-57089012 | Msa0609680:intron | 30.0% | |
| AGTTATTTACATCCACATTG+TGG | - | chr4_2:57089229-57089248 | None:intergenic | 30.0% | |
| !! | TTGATTTGTGTTAATGTTGC+AGG | + | chr4_2:57089252-57089271 | Msa0609680:intron | 30.0% |
| CACATTGCTTCTTATTCACT+AGG | - | chr4_2:57087076-57087095 | None:intergenic | 35.0% | |
| AGTGAATAAGAAGCAATGTG+AGG | + | chr4_2:57087076-57087095 | Msa0609680:CDS | 35.0% | |
| GTGAATAAGAAGCAATGTGA+GGG | + | chr4_2:57087077-57087096 | Msa0609680:CDS | 35.0% | |
| GATGAGGAATCAAATCTTGA+AGG | - | chr4_2:57087241-57087260 | None:intergenic | 35.0% | |
| GATTCCTCATCTTACTTACA+AGG | + | chr4_2:57087250-57087269 | Msa0609680:CDS | 35.0% | |
| !! | CTTGGTGCACATTTTATGAA+AGG | - | chr4_2:57087362-57087381 | None:intergenic | 35.0% |
| TTTATTCTTTGTACCATGGC+AGG | + | chr4_2:57087510-57087529 | Msa0609680:intron | 35.0% | |
| CAACAAAAAAAAGTTTGGGC+AGG | + | chr4_2:57087803-57087822 | Msa0609680:intron | 35.0% | |
| !! | TAATCGGTTTGAAATAGGAG+CGG | - | chr4_2:57087858-57087877 | None:intergenic | 35.0% |
| !!! | TTTTAGTTTGAACTCGCAGA+TGG | + | chr4_2:57088122-57088141 | Msa0609680:CDS | 35.0% |
| TTCATCTCCGCAAATGTTAA+AGG | - | chr4_2:57088199-57088218 | None:intergenic | 35.0% | |
| ATATACACAACTAAGAAGCC+AGG | + | chr4_2:57088231-57088250 | Msa0609680:CDS | 35.0% | |
| AAAATTGTTGTCAACAAGCC+TGG | - | chr4_2:57088252-57088271 | None:intergenic | 35.0% | |
| ! | GACAACAATTTTTCATGCGA+TGG | + | chr4_2:57088260-57088279 | Msa0609680:CDS | 35.0% |
| ! | ATTTGAAACTTACATGGGCT+TGG | - | chr4_2:57088353-57088372 | None:intergenic | 35.0% |
| GTACTTGTAGAGTAATTTGG+AGG | + | chr4_2:57088418-57088437 | Msa0609680:intron | 35.0% | |
| CTCAAGCGAAATCGTAAAAA+TGG | - | chr4_2:57088596-57088615 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGTCTCGATGTTGA+CGG | + | chr4_2:57088741-57088760 | Msa0609680:intron | 35.0% |
| CATCGGATTTATTTCAGTCA+TGG | + | chr4_2:57088794-57088813 | Msa0609680:intron | 35.0% | |
| TTCTTCCTTAGTCCTTTCTT+CGG | + | chr4_2:57088933-57088952 | Msa0609680:intron | 35.0% | |
| CATTATTGTTCTCCGAAGAA+AGG | - | chr4_2:57088948-57088967 | None:intergenic | 35.0% | |
| TTCTTCGGAGAACAATAATG+TGG | + | chr4_2:57088948-57088967 | Msa0609680:intron | 35.0% | |
| TCTTCGGAGAACAATAATGT+GGG | + | chr4_2:57088949-57088968 | Msa0609680:intron | 35.0% | |
| TAAAGATGCATGTGTACTCA+CGG | - | chr4_2:57089197-57089216 | None:intergenic | 35.0% | |
| AAGCCAAAATGCAATTTCAG+TGG | + | chr4_2:57089294-57089313 | Msa0609680:CDS | 35.0% | |
| CACATTGCTTCTTATTCACT+AGG | - | chr4_2:57087076-57087095 | None:intergenic | 35.0% | |
| AGTGAATAAGAAGCAATGTG+AGG | + | chr4_2:57087076-57087095 | Msa0609680:CDS | 35.0% | |
| GTGAATAAGAAGCAATGTGA+GGG | + | chr4_2:57087077-57087096 | Msa0609680:CDS | 35.0% | |
| GATGAGGAATCAAATCTTGA+AGG | - | chr4_2:57087241-57087260 | None:intergenic | 35.0% | |
| GATTCCTCATCTTACTTACA+AGG | + | chr4_2:57087250-57087269 | Msa0609680:CDS | 35.0% | |
| !! | CTTGGTGCACATTTTATGAA+AGG | - | chr4_2:57087362-57087381 | None:intergenic | 35.0% |
| TTTATTCTTTGTACCATGGC+AGG | + | chr4_2:57087510-57087529 | Msa0609680:intron | 35.0% | |
| CAACAAAAAAAAGTTTGGGC+AGG | + | chr4_2:57087803-57087822 | Msa0609680:intron | 35.0% | |
| !! | TAATCGGTTTGAAATAGGAG+CGG | - | chr4_2:57087858-57087877 | None:intergenic | 35.0% |
| !!! | TTTTAGTTTGAACTCGCAGA+TGG | + | chr4_2:57088122-57088141 | Msa0609680:CDS | 35.0% |
| TTCATCTCCGCAAATGTTAA+AGG | - | chr4_2:57088199-57088218 | None:intergenic | 35.0% | |
| ATATACACAACTAAGAAGCC+AGG | + | chr4_2:57088231-57088250 | Msa0609680:CDS | 35.0% | |
| AAAATTGTTGTCAACAAGCC+TGG | - | chr4_2:57088252-57088271 | None:intergenic | 35.0% | |
| ! | GACAACAATTTTTCATGCGA+TGG | + | chr4_2:57088260-57088279 | Msa0609680:CDS | 35.0% |
| ! | ATTTGAAACTTACATGGGCT+TGG | - | chr4_2:57088353-57088372 | None:intergenic | 35.0% |
| GTACTTGTAGAGTAATTTGG+AGG | + | chr4_2:57088418-57088437 | Msa0609680:intron | 35.0% | |
| CTCAAGCGAAATCGTAAAAA+TGG | - | chr4_2:57088596-57088615 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGTCTCGATGTTGA+CGG | + | chr4_2:57088741-57088760 | Msa0609680:intron | 35.0% |
| CATCGGATTTATTTCAGTCA+TGG | + | chr4_2:57088794-57088813 | Msa0609680:intron | 35.0% | |
| TTCTTCCTTAGTCCTTTCTT+CGG | + | chr4_2:57088933-57088952 | Msa0609680:intron | 35.0% | |
| CATTATTGTTCTCCGAAGAA+AGG | - | chr4_2:57088948-57088967 | None:intergenic | 35.0% | |
| TTCTTCGGAGAACAATAATG+TGG | + | chr4_2:57088948-57088967 | Msa0609680:intron | 35.0% | |
| TCTTCGGAGAACAATAATGT+GGG | + | chr4_2:57088949-57088968 | Msa0609680:intron | 35.0% | |
| TAAAGATGCATGTGTACTCA+CGG | - | chr4_2:57089197-57089216 | None:intergenic | 35.0% | |
| AAGCCAAAATGCAATTTCAG+TGG | + | chr4_2:57089294-57089313 | Msa0609680:CDS | 35.0% | |
| AATAAGAAGCAATGTGAGGG+AGG | + | chr4_2:57087080-57087099 | Msa0609680:CDS | 40.0% | |
| ATAAGAAGCAATGTGAGGGA+GGG | + | chr4_2:57087081-57087100 | Msa0609680:CDS | 40.0% | |
| AAAGTAAACTTGTCCTGCCA+TGG | - | chr4_2:57087526-57087545 | None:intergenic | 40.0% | |
| ! | TGGGCTTGGATTTTTCTCAA+TGG | + | chr4_2:57087702-57087721 | Msa0609680:intron | 40.0% |
| CAAAAAAAAGTTTGGGCAGG+AGG | + | chr4_2:57087806-57087825 | Msa0609680:intron | 40.0% | |
| !! | AATCGGTTTGAAATAGGAGC+GGG | - | chr4_2:57087857-57087876 | None:intergenic | 40.0% |
| GGTAGATTCTGTAACCATTG+TGG | + | chr4_2:57087987-57088006 | Msa0609680:intron | 40.0% | |
| AGATTCTGTAACCATTGTGG+AGG | + | chr4_2:57087990-57088009 | Msa0609680:CDS | 40.0% | |
| ! | CACGAGCTTTTCAACAAATG+TGG | + | chr4_2:57088157-57088176 | Msa0609680:CDS | 40.0% |
| AAGAATGTGTGTGTTCGAGA+AGG | + | chr4_2:57088478-57088497 | Msa0609680:intron | 40.0% | |
| ! | CCTCCACTGAAATTGCATTT+TGG | - | chr4_2:57089300-57089319 | None:intergenic | 40.0% |
| CCAAAATGCAATTTCAGTGG+AGG | + | chr4_2:57089297-57089316 | Msa0609680:CDS | 40.0% | |
| AATAAGAAGCAATGTGAGGG+AGG | + | chr4_2:57087080-57087099 | Msa0609680:CDS | 40.0% | |
| ATAAGAAGCAATGTGAGGGA+GGG | + | chr4_2:57087081-57087100 | Msa0609680:CDS | 40.0% | |
| AAAGTAAACTTGTCCTGCCA+TGG | - | chr4_2:57087526-57087545 | None:intergenic | 40.0% | |
| ! | TGGGCTTGGATTTTTCTCAA+TGG | + | chr4_2:57087702-57087721 | Msa0609680:intron | 40.0% |
| CAAAAAAAAGTTTGGGCAGG+AGG | + | chr4_2:57087806-57087825 | Msa0609680:intron | 40.0% | |
| !! | AATCGGTTTGAAATAGGAGC+GGG | - | chr4_2:57087857-57087876 | None:intergenic | 40.0% |
| GGTAGATTCTGTAACCATTG+TGG | + | chr4_2:57087987-57088006 | Msa0609680:intron | 40.0% | |
| AGATTCTGTAACCATTGTGG+AGG | + | chr4_2:57087990-57088009 | Msa0609680:CDS | 40.0% | |
| ! | CACGAGCTTTTCAACAAATG+TGG | + | chr4_2:57088157-57088176 | Msa0609680:CDS | 40.0% |
| AAGAATGTGTGTGTTCGAGA+AGG | + | chr4_2:57088478-57088497 | Msa0609680:intron | 40.0% | |
| ! | CCTCCACTGAAATTGCATTT+TGG | - | chr4_2:57089300-57089319 | None:intergenic | 40.0% |
| CCAAAATGCAATTTCAGTGG+AGG | + | chr4_2:57089297-57089316 | Msa0609680:CDS | 40.0% | |
| TAAGAAGCAATGTGAGGGAG+GGG | + | chr4_2:57087082-57087101 | Msa0609680:CDS | 45.0% | |
| CAAAACACTCTTCGAGGACT+TGG | - | chr4_2:57087380-57087399 | None:intergenic | 45.0% | |
| !!! | CAAGTCCTCGAAGAGTGTTT+TGG | + | chr4_2:57087378-57087397 | Msa0609680:intron | 45.0% |
| TTAGGCCAAAACACTCTTCG+AGG | - | chr4_2:57087386-57087405 | None:intergenic | 45.0% | |
| TGCACGTCATTCAACATGCA+TGG | + | chr4_2:57087598-57087617 | Msa0609680:intron | 45.0% | |
| ATGACACATCCACGACACTA+CGG | - | chr4_2:57088867-57088886 | None:intergenic | 45.0% | |
| GTTCTCCGAAGAAAGGACTA+AGG | - | chr4_2:57088941-57088960 | None:intergenic | 45.0% | |
| TTCTTCTGGCCAGTAGTCAA+AGG | - | chr4_2:57089005-57089024 | None:intergenic | 45.0% | |
| GAAAGTTACAAGCTAGCAGC+AGG | + | chr4_2:57089319-57089338 | Msa0609680:CDS | 45.0% | |
| AGCTAGCAGCAGGAGAAATT+AGG | + | chr4_2:57089329-57089348 | Msa0609680:CDS | 45.0% | |
| GCTAGCAGCAGGAGAAATTA+GGG | + | chr4_2:57089330-57089349 | Msa0609680:CDS | 45.0% | |
| CTAGCAGCAGGAGAAATTAG+GGG | + | chr4_2:57089331-57089350 | Msa0609680:CDS | 45.0% | |
| TAAGAAGCAATGTGAGGGAG+GGG | + | chr4_2:57087082-57087101 | Msa0609680:CDS | 45.0% | |
| CAAAACACTCTTCGAGGACT+TGG | - | chr4_2:57087380-57087399 | None:intergenic | 45.0% | |
| !!! | CAAGTCCTCGAAGAGTGTTT+TGG | + | chr4_2:57087378-57087397 | Msa0609680:intron | 45.0% |
| TTAGGCCAAAACACTCTTCG+AGG | - | chr4_2:57087386-57087405 | None:intergenic | 45.0% | |
| TGCACGTCATTCAACATGCA+TGG | + | chr4_2:57087598-57087617 | Msa0609680:intron | 45.0% | |
| ATGACACATCCACGACACTA+CGG | - | chr4_2:57088867-57088886 | None:intergenic | 45.0% | |
| GTTCTCCGAAGAAAGGACTA+AGG | - | chr4_2:57088941-57088960 | None:intergenic | 45.0% | |
| TTCTTCTGGCCAGTAGTCAA+AGG | - | chr4_2:57089005-57089024 | None:intergenic | 45.0% | |
| GAAAGTTACAAGCTAGCAGC+AGG | + | chr4_2:57089319-57089338 | Msa0609680:CDS | 45.0% | |
| AGCTAGCAGCAGGAGAAATT+AGG | + | chr4_2:57089329-57089348 | Msa0609680:CDS | 45.0% | |
| GCTAGCAGCAGGAGAAATTA+GGG | + | chr4_2:57089330-57089349 | Msa0609680:CDS | 45.0% | |
| CTAGCAGCAGGAGAAATTAG+GGG | + | chr4_2:57089331-57089350 | Msa0609680:CDS | 45.0% | |
| !! | AAAAAAAAAAAAAAATTGAA+AGG | - | chr4_2:57087415-57087434 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATATGAATAAT+CGG | - | chr4_2:57087874-57087893 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAATTGAA+AGG | - | chr4_2:57087415-57087434 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATATGAATAAT+CGG | - | chr4_2:57087874-57087893 | None:intergenic | 5.0% |
| ATGCACGTGCTGAGAGAGAA+AGG | + | chr4_2:57087186-57087205 | Msa0609680:CDS | 50.0% | |
| TTGGGCAGGAGGTTGAGATT+AGG | + | chr4_2:57087817-57087836 | Msa0609680:intron | 50.0% | |
| TGGGCAGGAGGTTGAGATTA+GGG | + | chr4_2:57087818-57087837 | Msa0609680:intron | 50.0% | |
| CTTCACTGCTTCCTCCACAA+TGG | - | chr4_2:57088004-57088023 | None:intergenic | 50.0% | |
| TGACACATCCACGACACTAC+GGG | - | chr4_2:57088866-57088885 | None:intergenic | 50.0% | |
| ATGCACGTGCTGAGAGAGAA+AGG | + | chr4_2:57087186-57087205 | Msa0609680:CDS | 50.0% | |
| TTGGGCAGGAGGTTGAGATT+AGG | + | chr4_2:57087817-57087836 | Msa0609680:intron | 50.0% | |
| TGGGCAGGAGGTTGAGATTA+GGG | + | chr4_2:57087818-57087837 | Msa0609680:intron | 50.0% | |
| CTTCACTGCTTCCTCCACAA+TGG | - | chr4_2:57088004-57088023 | None:intergenic | 50.0% | |
| TGACACATCCACGACACTAC+GGG | - | chr4_2:57088866-57088885 | None:intergenic | 50.0% | |
| GACACATCCACGACACTACG+GGG | - | chr4_2:57088865-57088884 | None:intergenic | 55.0% | |
| GACACATCCACGACACTACG+GGG | - | chr4_2:57088865-57088884 | None:intergenic | 55.0% | |
| ATTGCGGCCCCGTAGTGTCG+TGG | + | chr4_2:57088855-57088874 | Msa0609680:intron | 65.0% | |
| ATTGCGGCCCCGTAGTGTCG+TGG | + | chr4_2:57088855-57088874 | Msa0609680:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 57086918 | 57089369 | 57086918 | ID=Msa0609680;Name=Msa0609680 |
| chr4_2 | mRNA | 57086918 | 57089369 | 57086918 | ID=Msa0609680-mRNA-1;Parent=Msa0609680;Name=Msa0609680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|273 |
| chr4_2 | exon | 57086918 | 57087271 | 57086918 | ID=Msa0609680-mRNA-1:exon:14824;Parent=Msa0609680-mRNA-1 |
| chr4_2 | exon | 57087988 | 57088359 | 57087988 | ID=Msa0609680-mRNA-1:exon:14825;Parent=Msa0609680-mRNA-1 |
| chr4_2 | exon | 57089274 | 57089369 | 57089274 | ID=Msa0609680-mRNA-1:exon:14826;Parent=Msa0609680-mRNA-1 |
| chr4_2 | CDS | 57086918 | 57087271 | 57086918 | ID=Msa0609680-mRNA-1:cds;Parent=Msa0609680-mRNA-1 |
| chr4_2 | CDS | 57087988 | 57088359 | 57087988 | ID=Msa0609680-mRNA-1:cds;Parent=Msa0609680-mRNA-1 |
| chr4_2 | CDS | 57089274 | 57089369 | 57089274 | ID=Msa0609680-mRNA-1:cds;Parent=Msa0609680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
