AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0609730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609730 MtrunA17_Chr4g0042561 97.426 272 5 2 1 271 1 271 0.0 548
Msa0609730 MtrunA17_Chr5g0417791 70.543 258 65 5 8 259 2 254 6.03e-130 369
Msa0609730 MtrunA17_Chr2g0326361 67.052 173 55 1 3 173 8 180 1.28e-83 253
Msa0609730 MtrunA17_Chr7g0263931 62.766 188 61 3 8 188 10 195 6.01e-81 246
Msa0609730 MtrunA17_Chr7g0252971 55.804 224 78 5 9 211 8 231 4.86e-80 244
Msa0609730 MtrunA17_Chr2g0318101 62.500 176 55 3 9 173 15 190 1.42e-78 241
Msa0609730 MtrunA17_Chr4g0047841 65.517 174 39 3 9 161 15 188 2.80e-77 238
Msa0609730 MtrunA17_Chr8g0384721 63.694 157 56 1 6 162 4 159 3.69e-73 225
Msa0609730 MtrunA17_Chr3g0124761 63.522 159 56 2 4 162 2 158 3.40e-72 223
Msa0609730 MtrunA17_Chr2g0318081 64.706 153 50 1 9 161 16 164 4.73e-71 222
Msa0609730 MtrunA17_Chr8g0359921 64.052 153 53 1 9 161 14 164 1.23e-70 220
Msa0609730 MtrunA17_Chr3g0130731 63.226 155 55 2 8 162 6 158 1.10e-68 214
Msa0609730 MtrunA17_Chr6g0484441 46.190 210 101 2 9 212 5 208 2.94e-60 193
Msa0609730 MtrunA17_Chr2g0309891 57.419 155 61 3 9 161 6 157 1.20e-59 192
Msa0609730 MtrunA17_Chr6g0453451 51.786 168 79 1 1 168 12 177 2.15e-59 191
Msa0609730 MtrunA17_Chr4g0060931 54.717 159 70 1 8 166 16 172 3.97e-59 192
Msa0609730 MtrunA17_Chr6g0481091 46.231 199 97 5 9 201 6 200 1.31e-58 186
Msa0609730 MtrunA17_Chr2g0309331 47.644 191 90 3 1 187 2 186 5.66e-58 188
Msa0609730 MtrunA17_Chr7g0214071 59.119 159 54 3 9 165 15 164 7.50e-58 185
Msa0609730 MtrunA17_Chr3g0091921 55.696 158 68 1 9 166 16 171 3.08e-57 185
Msa0609730 MtrunA17_Chr8g0361731 49.738 191 83 5 11 190 16 204 3.41e-57 187
Msa0609730 MtrunA17_Chr4g0017921 39.493 276 143 7 3 266 2 265 1.62e-56 185
Msa0609730 MtrunA17_Chr5g0417001 49.730 185 81 4 11 187 16 196 4.93e-56 184
Msa0609730 MtrunA17_Chr6g0453131 46.766 201 99 4 8 202 14 212 8.33e-56 184
Msa0609730 MtrunA17_Chr3g0139331 52.941 170 70 3 1 166 1 164 1.25e-55 182
Msa0609730 MtrunA17_Chr2g0316971 54.088 159 69 2 9 165 23 179 2.36e-55 182
Msa0609730 MtrunA17_Chr4g0056541 47.486 179 85 2 9 184 7 179 6.92e-55 181
Msa0609730 MtrunA17_Chr1g0200561 53.846 156 63 3 9 161 19 168 7.03e-55 180
Msa0609730 MtrunA17_Chr4g0018391 51.592 157 67 2 9 162 7 157 2.83e-54 179
Msa0609730 MtrunA17_Chr5g0405211 50.955 157 68 2 9 162 8 158 6.76e-54 178
Msa0609730 MtrunA17_Chr5g0433781 54.839 155 64 2 9 161 6 156 9.61e-54 184
Msa0609730 MtrunA17_Chr8g0346001 44.390 205 100 5 8 201 14 215 9.69e-54 180
Msa0609730 MtrunA17_Chr3g0109821 54.839 155 65 3 9 161 6 157 2.04e-53 183
Msa0609730 MtrunA17_Chr7g0253011 52.500 160 70 2 6 161 14 171 2.52e-53 177
Msa0609730 MtrunA17_Chr1g0147421 53.659 164 61 5 9 166 27 181 1.25e-52 175
Msa0609730 MtrunA17_Chr8g0372121 49.045 157 71 2 9 162 6 156 2.85e-52 172
Msa0609730 MtrunA17_Chr5g0398971 49.112 169 76 4 9 173 7 169 6.24e-52 173
Msa0609730 MtrunA17_Chr6g0461661 38.290 269 140 8 2 262 11 261 9.15e-51 171
Msa0609730 MtrunA17_Chr7g0217721 47.368 171 75 2 12 169 22 190 9.72e-51 170
Msa0609730 MtrunA17_Chr5g0442771 51.572 159 69 3 11 161 20 178 2.20e-50 167
Msa0609730 MtrunA17_Chr8g0385991 50.311 161 73 4 9 165 14 171 1.14e-49 163
Msa0609730 MtrunA17_Chr4g0076731 51.316 152 67 3 11 161 56 201 2.53e-49 168
Msa0609730 MtrunA17_Chr7g0261411 44.828 174 86 3 9 180 10 175 2.88e-49 164
Msa0609730 MtrunA17_Chr2g0312321 48.428 159 77 3 3 161 5 158 3.76e-49 164
Msa0609730 MtrunA17_Chr1g0183741 47.205 161 72 4 9 167 10 159 6.04e-49 163
Msa0609730 MtrunA17_Chr2g0311651 50.920 163 68 5 11 161 24 186 2.65e-48 162
Msa0609730 MtrunA17_Chr5g0400461 50.000 164 66 3 9 163 6 162 1.04e-47 161
Msa0609730 MtrunA17_Chr3g0131911 51.553 161 70 3 8 162 13 171 3.69e-47 157
Msa0609730 MtrunA17_Chr2g0311661 51.220 164 66 4 11 161 23 185 5.28e-47 158
Msa0609730 MtrunA17_Chr3g0144271 58.140 129 51 2 9 134 23 151 8.89e-47 161
Msa0609730 MtrunA17_Chr1g0197351 49.689 161 77 2 9 165 42 202 1.68e-46 162
Msa0609730 MtrunA17_Chr5g0428991 52.201 159 66 3 8 162 24 176 2.18e-46 164
Msa0609730 MtrunA17_Chr4g0054791 49.398 166 73 4 9 168 6 166 3.32e-46 157
Msa0609730 MtrunA17_Chr7g0217711 54.264 129 59 0 8 136 18 146 9.08e-46 152
Msa0609730 MtrunA17_Chr4g0038751 48.171 164 73 2 11 171 17 171 1.23e-45 155
Msa0609730 MtrunA17_Chr1g0201021 47.134 157 77 2 11 165 21 173 3.98e-45 159
Msa0609730 MtrunA17_Chr3g0128151 50.955 157 67 3 9 161 22 172 1.04e-44 159
Msa0609730 MtrunA17_Chr3g0092671 48.428 159 72 5 11 165 7 159 3.28e-44 157
Msa0609730 MtrunA17_Chr1g0197361 46.429 168 81 5 1 165 1 162 4.67e-44 157
Msa0609730 MtrunA17_Chr3g0130101 44.586 157 81 3 11 165 9 161 1.91e-43 151
Msa0609730 MtrunA17_Chr3g0128111 47.134 157 67 3 12 161 45 192 7.50e-43 146
Msa0609730 MtrunA17_Chr8g0364791 45.000 160 82 3 8 165 5 160 3.48e-42 149
Msa0609730 MtrunA17_Chr8g0384201 43.125 160 85 3 8 165 5 160 9.29e-40 144
Msa0609730 MtrunA17_Chr4g0050701 40.764 157 81 3 9 161 11 159 2.04e-37 130
Msa0609730 MtrunA17_Chr3g0113001 52.756 127 53 3 58 183 14 134 1.45e-36 131
Msa0609730 MtrunA17_Chr4g0026141 44.654 159 77 5 9 159 5 160 3.08e-36 129
Msa0609730 MtrunA17_Chr2g0321631 43.312 157 81 4 10 159 5 160 6.09e-36 128
Msa0609730 MtrunA17_Chr8g0345671 50.758 132 59 4 6 132 8 138 1.68e-35 131
Msa0609730 MtrunA17_Chr7g0266701 39.181 171 96 4 9 171 4 174 2.21e-35 127
Msa0609730 MtrunA17_Chr2g0321741 49.180 122 50 2 40 160 23 133 2.51e-35 129
Msa0609730 MtrunA17_Chr8g0345711 40.625 160 82 6 9 156 12 170 1.72e-31 114
Msa0609730 MtrunA17_Chr8g0384351 40.741 162 72 5 1 162 2 139 1.67e-30 112
Msa0609730 MtrunA17_Chr3g0113031 51.754 114 45 3 73 183 4 110 3.77e-29 111
Msa0609730 MtrunA17_Chr8g0345691 42.038 157 72 7 9 158 12 156 4.29e-29 114
Msa0609730 MtrunA17_Chr8g0345731 45.802 131 64 5 9 132 24 154 1.95e-28 107
Msa0609730 MtrunA17_Chr8g0345721 39.355 155 59 5 12 132 38 191 5.03e-26 101
Msa0609730 MtrunA17_Chr3g0130321 31.100 209 121 7 6 198 4 205 2.24e-25 99.8
Msa0609730 MtrunA17_Chr7g0243371 58.667 75 29 1 62 134 17 91 1.26e-23 92.8
Msa0609730 MtrunA17_Chr8g0345741 42.373 118 62 4 20 132 2 118 2.90e-23 92.8
Msa0609730 MtrunA17_Chr8g0345701 38.411 151 69 7 1 132 1 146 2.39e-22 90.9
Msa0609730 MtrunA17_Chr7g0251651 29.091 165 107 6 3 161 12 172 1.28e-17 79.0
Msa0609730 MtrunA17_Chr7g0251661 27.632 152 103 5 3 151 4 151 1.83e-17 77.4
Msa0609730 MtrunA17_Chr7g0251671 29.688 128 84 4 8 132 9 133 4.23e-16 73.9
Msa0609730 MtrunA17_Chr7g0274971 32.692 156 86 7 15 160 11 157 1.31e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609730 AT1G69490.1 66.222 225 66 3 1 215 1 225 6.20e-109 316
Msa0609730 AT3G04070.2 55.963 218 78 5 9 208 10 227 7.98e-79 242
Msa0609730 AT1G61110.1 69.136 162 41 2 9 161 16 177 2.62e-78 240
Msa0609730 AT3G04070.1 52.991 234 76 6 9 208 10 243 2.17e-77 239
Msa0609730 AT3G15510.1 62.573 171 55 2 13 174 21 191 1.17e-75 234
Msa0609730 AT1G77450.1 61.585 164 61 2 1 164 2 163 1.41e-73 226
Msa0609730 AT4G27410.2 51.613 217 86 4 9 211 14 225 6.25e-73 225
Msa0609730 AT3G15500.1 62.275 167 55 2 9 175 14 172 7.73e-73 226
Msa0609730 AT1G52890.1 63.924 158 53 1 5 162 10 163 1.03e-72 226
Msa0609730 AT1G01720.1 63.871 155 55 1 8 162 6 159 4.77e-71 220
Msa0609730 AT5G08790.1 62.581 155 56 2 9 162 7 160 2.64e-68 213
Msa0609730 AT4G27410.3 47.863 234 86 5 9 211 14 242 3.36e-68 214
Msa0609730 AT1G52880.1 68.153 157 42 2 13 161 21 177 1.60e-67 212
Msa0609730 AT5G63790.1 61.290 155 58 2 9 162 50 203 8.13e-67 210
Msa0609730 AT5G63790.2 61.290 155 58 2 9 162 60 213 8.95e-67 211
Msa0609730 AT5G39610.1 54.545 165 73 1 1 165 12 174 4.63e-60 192
Msa0609730 AT5G07680.1 53.892 167 75 1 2 168 10 174 1.18e-59 192
Msa0609730 AT5G07680.2 55.280 161 70 1 8 168 2 160 1.48e-59 192
Msa0609730 AT5G61430.1 54.658 161 71 1 8 168 15 173 2.67e-59 192
Msa0609730 AT2G33480.2 56.410 156 59 2 8 163 14 160 1.43e-58 187
Msa0609730 AT2G33480.1 58.333 156 58 3 8 163 14 162 1.91e-58 187
Msa0609730 AT5G13180.1 58.125 160 57 4 8 165 13 164 8.61e-58 185
Msa0609730 AT3G18400.1 51.899 158 71 1 9 166 5 157 1.11e-57 187
Msa0609730 AT2G24430.2 55.280 161 63 3 9 166 16 170 1.07e-56 184
Msa0609730 AT2G24430.1 55.280 161 63 3 9 166 16 170 1.07e-56 184
Msa0609730 AT3G29035.1 53.333 165 75 1 1 165 16 178 1.71e-56 184
Msa0609730 AT4G36160.1 47.312 186 88 3 1 182 1 180 2.12e-56 186
Msa0609730 AT4G36160.3 47.312 186 88 3 1 182 1 180 2.12e-56 186
Msa0609730 AT4G36160.2 47.312 186 88 3 1 182 5 184 2.17e-56 186
Msa0609730 AT3G17730.1 50.588 170 78 3 9 176 6 171 3.58e-56 181
Msa0609730 AT3G15170.1 55.484 155 65 2 9 161 20 172 3.91e-56 183
Msa0609730 AT2G18060.3 45.789 190 92 4 1 187 1 182 5.44e-56 184
Msa0609730 AT2G18060.1 45.789 190 92 4 1 187 1 182 5.44e-56 184
Msa0609730 AT1G33280.1 51.190 168 72 2 3 167 2 162 2.72e-55 181
Msa0609730 AT1G65910.1 49.697 165 77 2 9 171 6 166 3.64e-55 188
Msa0609730 AT5G53950.1 53.416 161 71 2 9 167 17 175 4.49e-55 182
Msa0609730 AT4G10350.1 45.918 196 98 3 1 192 1 192 1.05e-54 180
Msa0609730 AT1G76420.1 53.503 157 62 3 9 161 22 171 2.75e-54 179
Msa0609730 AT2G43000.1 46.269 201 89 3 11 211 20 201 3.87e-54 177
Msa0609730 AT5G39820.1 51.744 172 60 4 11 161 22 191 4.42e-54 178
Msa0609730 AT1G62700.1 48.087 183 82 4 8 184 6 181 4.50e-54 180
Msa0609730 AT1G62700.2 48.087 183 82 4 8 184 6 181 4.50e-54 180
Msa0609730 AT3G04060.1 45.894 207 98 5 8 213 19 212 8.72e-54 177
Msa0609730 AT5G17260.1 54.839 155 65 3 9 161 6 157 9.33e-54 181
Msa0609730 AT2G46770.1 44.091 220 104 6 8 208 15 234 9.36e-54 178
Msa0609730 AT1G12260.2 46.927 179 86 2 9 184 7 179 1.28e-53 177
Msa0609730 AT5G18270.2 52.147 163 75 2 8 169 20 180 1.90e-53 177
Msa0609730 AT1G79580.3 52.532 158 64 3 9 162 17 167 2.47e-53 177
Msa0609730 AT1G79580.5 52.532 158 64 3 9 162 17 167 2.47e-53 177
Msa0609730 AT1G79580.4 52.532 158 64 3 9 162 17 167 2.47e-53 177
Msa0609730 AT1G79580.2 52.532 158 64 3 9 162 17 167 2.47e-53 177
Msa0609730 AT1G79580.1 52.532 158 64 3 9 162 17 167 2.47e-53 177
Msa0609730 AT1G12260.1 46.927 179 86 2 9 184 7 179 2.85e-53 178
Msa0609730 AT1G71930.2 47.561 164 77 2 1 161 1 158 4.18e-53 175
Msa0609730 AT1G71930.1 47.561 164 77 2 1 161 1 158 4.18e-53 175
Msa0609730 AT5G18270.1 51.534 163 76 2 8 169 20 180 5.10e-53 176
Msa0609730 AT3G03200.1 53.548 155 67 3 9 161 6 157 1.06e-52 178
Msa0609730 AT1G26870.1 54.375 160 66 3 9 161 16 175 2.96e-52 176
Msa0609730 AT5G66300.1 48.750 160 74 2 6 162 9 163 1.57e-51 170
Msa0609730 AT1G54330.1 51.613 155 66 2 9 161 6 153 2.15e-51 170
Msa0609730 AT3G61910.1 41.014 217 105 5 8 208 10 219 2.30e-51 171
Msa0609730 AT3G12977.1 43.889 180 95 2 9 185 18 194 2.38e-51 169
Msa0609730 AT5G62380.2 50.955 157 68 2 9 162 7 157 3.07e-51 171
Msa0609730 AT5G62380.1 50.955 157 68 2 9 162 7 157 3.07e-51 171
Msa0609730 AT1G56010.2 47.619 168 83 3 2 165 9 175 8.61e-51 169
Msa0609730 AT3G10480.1 50.303 165 75 3 3 165 23 182 1.04e-50 172
Msa0609730 AT2G02450.1 48.851 174 82 3 11 183 53 220 1.50e-50 170
Msa0609730 AT1G32770.1 47.024 168 80 2 8 166 15 182 2.28e-50 169
Msa0609730 AT2G02450.2 53.289 152 64 3 11 161 53 198 2.49e-50 171
Msa0609730 AT3G10480.2 50.909 165 73 4 3 165 23 181 2.87e-50 171
Msa0609730 AT5G46590.1 54.375 160 65 5 9 164 6 161 4.29e-50 167
Msa0609730 AT3G10490.1 47.879 165 81 3 3 165 21 182 1.01e-49 164
Msa0609730 AT2G17040.1 49.398 166 72 2 11 173 8 164 1.14e-48 162
Msa0609730 AT5G46590.2 59.690 129 49 2 9 134 6 134 2.15e-48 162
Msa0609730 AT3G10500.1 49.686 159 74 2 9 165 9 163 2.81e-48 168
Msa0609730 AT4G17980.1 51.572 159 67 4 9 161 6 160 3.67e-48 161
Msa0609730 AT4G17980.2 51.572 159 67 4 9 161 6 160 4.56e-48 161
Msa0609730 AT5G04410.1 50.314 159 73 3 9 165 9 163 1.25e-47 167
Msa0609730 AT3G10490.2 47.879 165 81 3 3 165 21 182 1.25e-47 164
Msa0609730 AT4G28530.1 44.767 172 69 3 8 161 9 172 2.19e-47 161
Msa0609730 AT4G35580.3 51.250 160 62 3 9 161 9 159 5.20e-47 164
Msa0609730 AT4G35580.2 51.250 160 62 3 9 161 9 159 5.51e-47 164
Msa0609730 AT4G35580.1 49.405 168 69 3 1 161 1 159 7.00e-47 164
Msa0609730 AT1G34180.3 47.205 161 71 3 11 165 18 170 3.02e-46 160
Msa0609730 AT1G33060.1 50.955 157 67 3 9 161 24 174 4.66e-46 163
Msa0609730 AT1G33060.2 50.955 157 67 3 9 161 24 174 4.70e-46 164
Msa0609730 AT3G44290.2 47.531 162 72 3 11 170 16 166 5.02e-46 154
Msa0609730 AT1G32510.1 47.368 190 82 7 9 188 6 187 6.23e-46 155
Msa0609730 AT5G22290.1 46.243 173 77 4 1 171 16 174 1.01e-45 157
Msa0609730 AT3G10480.3 42.424 198 74 4 3 165 23 215 1.28e-45 160
Msa0609730 AT5G24590.2 48.521 169 76 4 1 164 5 167 1.44e-45 159
Msa0609730 AT1G34180.1 47.205 161 71 3 11 165 18 170 1.97e-45 160
Msa0609730 AT3G44290.1 47.531 162 72 3 11 170 16 166 2.12e-45 155
Msa0609730 AT2G27300.1 45.122 164 78 2 9 171 14 166 2.56e-45 155
Msa0609730 AT1G34190.1 45.963 161 73 3 11 165 18 170 3.24e-45 160
Msa0609730 AT1G34180.4 43.353 173 72 3 11 165 18 182 5.34e-44 155
Msa0609730 AT1G34180.2 43.353 173 72 3 11 165 18 182 2.73e-43 155
Msa0609730 AT3G12910.1 48.780 164 70 5 11 161 23 185 9.13e-43 148
Msa0609730 AT5G64060.1 45.062 162 77 3 9 165 6 160 1.77e-42 149
Msa0609730 AT3G49530.2 46.341 164 71 4 9 164 13 167 1.82e-42 150
Msa0609730 AT3G49530.1 46.341 164 71 4 9 164 13 167 3.20e-42 150
Msa0609730 AT5G09330.5 38.559 236 126 5 8 230 5 234 9.18e-42 149
Msa0609730 AT5G09330.2 38.559 236 126 5 8 230 5 234 9.18e-42 149
Msa0609730 AT5G09330.4 38.559 236 126 5 8 230 5 234 9.18e-42 149
Msa0609730 AT5G09330.3 38.559 236 126 5 8 230 5 234 9.18e-42 149
Msa0609730 AT5G09330.1 38.559 236 126 5 8 230 5 234 9.18e-42 149
Msa0609730 AT1G32870.2 49.375 160 73 4 9 165 10 164 1.30e-41 150
Msa0609730 AT1G32870.1 49.375 160 73 4 9 165 10 164 1.42e-41 150
Msa0609730 AT1G32870.3 49.375 160 73 4 9 165 46 200 2.59e-41 149
Msa0609730 AT5G61430.2 53.153 111 50 1 58 168 2 110 1.35e-37 134
Msa0609730 AT4G10350.2 47.727 132 64 2 62 192 18 145 2.85e-35 128
Msa0609730 AT1G56010.1 52.381 105 49 1 61 165 5 108 1.36e-34 125
Msa0609730 AT5G04395.1 43.919 148 67 3 3 134 22 169 1.63e-34 123
Msa0609730 AT2G33480.3 57.843 102 39 2 62 163 8 105 4.15e-34 123
Msa0609730 AT3G12977.2 46.957 115 58 1 54 168 10 121 4.84e-34 123
Msa0609730 AT5G64530.1 34.848 198 101 5 9 194 3 184 5.22e-32 117
Msa0609730 AT5G64530.2 44.531 128 57 3 9 134 3 118 1.04e-31 115
Msa0609730 AT5G22380.1 40.252 159 86 5 8 159 4 160 1.15e-30 114
Msa0609730 AT4G28530.2 48.148 108 40 1 8 99 9 116 1.83e-30 116
Msa0609730 AT3G44350.2 37.059 170 98 5 8 171 4 170 3.79e-30 113
Msa0609730 AT4G01550.1 41.975 162 75 6 12 165 7 157 6.19e-29 114
Msa0609730 AT3G04420.2 44.961 129 67 2 8 132 2 130 1.55e-28 110
Msa0609730 AT3G44350.1 41.791 134 72 3 8 135 4 137 1.84e-28 107
Msa0609730 AT3G04420.1 44.961 129 67 2 8 132 2 130 2.68e-28 111
Msa0609730 AT2G43000.2 42.553 141 62 3 71 211 2 123 5.38e-27 104
Msa0609730 AT1G02230.1 46.154 130 60 6 10 132 4 130 2.02e-25 103
Msa0609730 AT4G01520.1 41.667 132 70 4 10 134 5 136 1.01e-24 100
Msa0609730 AT1G02220.1 42.636 129 67 3 8 132 2 127 3.15e-24 100
Msa0609730 AT4G01540.4 42.308 130 68 4 12 134 7 136 7.08e-24 99.8
Msa0609730 AT4G01540.3 42.308 130 68 4 12 134 7 136 7.50e-24 100
Msa0609730 AT4G01540.2 42.308 130 68 4 12 134 7 136 7.55e-24 100
Msa0609730 AT4G01540.1 42.308 130 68 4 12 134 7 136 1.03e-23 100
Msa0609730 AT3G56530.1 34.375 160 96 3 3 159 46 199 3.15e-23 97.1
Msa0609730 AT5G14000.2 37.405 131 78 2 8 136 14 142 1.46e-22 91.3
Msa0609730 AT1G02250.1 43.846 130 63 5 10 132 4 130 1.62e-22 95.5
Msa0609730 AT5G14000.1 32.934 167 99 4 8 171 14 170 1.93e-22 92.4
Msa0609730 AT2G18060.2 44.118 102 49 3 86 187 1 94 9.87e-22 92.0
Msa0609730 AT1G01010.1 37.654 162 72 7 12 158 6 153 1.88e-21 93.6
Msa0609730 AT3G10490.4 48.810 84 40 2 82 165 2 82 2.27e-21 92.4
Msa0609730 AT3G10490.3 48.810 84 40 2 82 165 2 82 2.27e-21 92.4
Msa0609730 AT5G50820.1 35.766 137 76 4 6 138 14 142 9.10e-21 87.8
Msa0609730 AT3G55210.1 33.333 171 92 4 3 159 5 167 4.02e-19 85.1
Msa0609730 AT5G22290.2 47.059 85 33 2 88 171 2 75 1.51e-17 80.1
Msa0609730 AT3G04430.1 35.878 131 70 5 15 132 6 135 3.06e-12 64.3
Msa0609730 AT1G28470.1 31.081 148 85 5 9 140 77 223 7.19e-12 65.1
Msa0609730 AT5G18300.1 34.286 140 72 7 13 145 18 144 8.57e-12 62.0
Msa0609730 AT5G56620.2 32.258 155 73 7 9 134 43 194 2.85e-11 63.5
Msa0609730 AT5G56620.1 32.258 155 73 7 9 134 43 194 2.90e-11 63.5
Msa0609730 AT5G56620.3 32.258 155 73 7 9 134 43 194 3.00e-11 63.5
Msa0609730 AT4G29230.3 32.667 150 76 6 9 134 48 196 5.25e-11 62.8
Msa0609730 AT4G29230.1 32.667 150 76 6 9 134 48 196 5.41e-11 62.8
Msa0609730 AT4G29230.2 32.667 150 76 6 9 134 47 195 5.82e-11 62.8

Find 71 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATTTGTTTCACAAATAT+TGG 0.195650 4_2:+57189810 None:intergenic
CAAATCAACAATTCCAATAT+TGG 0.200100 4_2:-57189915 Msa0609730:CDS
AATCGAACTCGGTATCTATT+TGG 0.210406 4_2:-57189673 Msa0609730:three_prime_UTR
AAAAGTGGATCAAAGCAAAT+TGG 0.239330 4_2:-57190541 Msa0609730:CDS
ATAAGGGTCAATTCCAATAT+TGG 0.256019 4_2:+57189902 None:intergenic
TTTGGGTACTTTCTTTCTCT+TGG 0.269227 4_2:+57190631 None:intergenic
GAGCAACTTTGTCTGGATAT+TGG 0.273149 4_2:-57190591 Msa0609730:CDS
TTGTTCACTTACTTATCTTT+TGG 0.277479 4_2:-57189988 Msa0609730:CDS
AATGCAGATAAATCTGAGTT+TGG 0.318833 4_2:-57190679 Msa0609730:intron
CCAGACAAAGTTGCTCTATT+AGG 0.328673 4_2:+57190598 None:intergenic
CTATTAGGCCTAACCCCATT+TGG 0.336706 4_2:+57190613 None:intergenic
TTGGGTACTTTCTTTCTCTT+GGG 0.351827 4_2:+57190632 None:intergenic
ATCGAACTCGGTATCTATTT+GGG 0.361613 4_2:-57189672 Msa0609730:three_prime_UTR
ATGCAGATAAATCTGAGTTT+GGG 0.362021 4_2:-57190678 Msa0609730:intron
CTTATCTGATGGTTTAACTT+TGG 0.369466 4_2:-57189943 Msa0609730:CDS
ATGCATGAGTACAGATTGAT+TGG 0.383604 4_2:-57190454 Msa0609730:CDS
AAAGTGGATCAAAGCAAATT+GGG 0.388567 4_2:-57190540 Msa0609730:CDS
AATTGGGGTGAAGAAATCTT+TGG 0.390973 4_2:-57190524 Msa0609730:CDS
TATTAGGCCTAACCCCATTT+GGG 0.396297 4_2:+57190614 None:intergenic
TAATGATTGGTCATTTCAAC+TGG 0.399348 4_2:+57189867 None:intergenic
CCTAATAGAGCAACTTTGTC+TGG 0.401002 4_2:-57190598 Msa0609730:CDS
AAGCAAACTAGCAAGCATAT+TGG 0.410934 4_2:-57190424 Msa0609730:CDS
TTTCACAAATATTGGCTGAT+TGG 0.426611 4_2:+57189818 None:intergenic
GAGAAAGAAAGTACCCAAAT+GGG 0.441206 4_2:-57190627 Msa0609730:CDS
AATTTATAGATATCAACTTC+AGG 0.444025 4_2:+57191015 None:intergenic
GTTAAACCATCAGATAAGAT+TGG 0.447755 4_2:+57189948 None:intergenic
AGAGAAAGAAAGTACCCAAA+TGG 0.452421 4_2:-57190628 Msa0609730:CDS
CAAAGGGTGTCAAAACTGAT+TGG 0.459054 4_2:-57190480 Msa0609730:CDS
CTGAGTTTGGGGAGAATGAA+TGG 0.459662 4_2:-57190666 Msa0609730:CDS
ACAAGCTATGAGCTCCCTCC+TGG 0.472529 4_2:-57191126 Msa0609730:CDS
TTTGGTCCAATCTTATCTGA+TGG 0.485374 4_2:-57189954 Msa0609730:CDS
TAAGTGAACAACTCCTTGTA+AGG 0.485477 4_2:+57190000 None:intergenic
ATATCTATAAATTTGATCCA+TGG 0.491707 4_2:-57191005 Msa0609730:CDS
TCTGGATATTGGAAAGCTAC+TGG 0.494091 4_2:-57190580 Msa0609730:CDS
ACTTCAGGTATGATAGATGC+AGG 0.501390 4_2:+57191030 None:intergenic
GAGAGGAATTGAATTAATCA+AGG 0.505871 4_2:+57191268 None:intergenic
TATCTATAAATTTGATCCAT+GGG 0.513541 4_2:-57191004 Msa0609730:CDS
TTTGATCCATGGGAATTGCC+TGG 0.520646 4_2:-57190994 Msa0609730:intron
GTACAAGTGGTTGGTGCGTA+AGG 0.521287 4_2:+57189631 None:intergenic
TCTATAATAACTAATAATGA+TGG 0.526503 4_2:-57190041 Msa0609730:CDS
TGAATCTGCTTCATAATGAT+TGG 0.528337 4_2:+57189854 None:intergenic
TTGGTCATTTCAACTGGCTG+AGG 0.532125 4_2:+57189873 None:intergenic
TTACAAGGGCAGGCCACCAA+AGG 0.537258 4_2:-57190497 Msa0609730:CDS
GTTGGATGAAATCTAAAGCC+AGG 0.547592 4_2:+57191108 None:intergenic
AAGAAATGATGAACCTTACA+AGG 0.553442 4_2:-57190013 Msa0609730:CDS
TACAAGGGCAGGCCACCAAA+GGG 0.555341 4_2:-57190496 Msa0609730:CDS
GAAAGTACCCAAATGGGGTT+AGG 0.557007 4_2:-57190621 Msa0609730:CDS
CAATAAGGGCTTTACCCTCA+TGG 0.561152 4_2:+57190399 None:intergenic
ACAATTAGTTCCTCATCAGT+TGG 0.571272 4_2:+57191090 None:intergenic
TAGATTTCATCCAACTGATG+AGG 0.573387 4_2:-57191100 Msa0609730:CDS
GTGTCATCAGCTAGATGACT+GGG 0.591677 4_2:-57190150 Msa0609730:intron
ACAGACAAGGCAATCAAAAG+TGG 0.595775 4_2:-57190556 Msa0609730:CDS
TATATACCAGGCAATTCCCA+TGG 0.600939 4_2:+57190988 None:intergenic
TGTGTCATCAGCTAGATGAC+TGG 0.610296 4_2:-57190151 Msa0609730:intron
GAAAGCTACTGGCACAGACA+AGG 0.610943 4_2:-57190569 Msa0609730:CDS
AAAATTTAAGACGCTTCGAG+AGG 0.624029 4_2:+57191251 None:intergenic
ATCTATAAGAAGAAGCACAT+GGG 0.628002 4_2:-57190116 Msa0609730:CDS
GGTATGATAGATGCAGGGCA+TGG 0.629076 4_2:+57191036 None:intergenic
TGCAGATAAATCTGAGTTTG+GGG 0.637040 4_2:-57190677 Msa0609730:intron
CAAGCATATTGGATCCATGA+GGG 0.642547 4_2:-57190413 Msa0609730:intron
TTGATGTAGCTTGATTACAA+AGG 0.644208 4_2:+57191061 None:intergenic
TTATTAGTAGGAATCGAACT+CGG 0.644447 4_2:-57189684 Msa0609730:three_prime_UTR
ACAGGACTAGTACAAGTGGT+TGG 0.648945 4_2:+57189622 None:intergenic
GATGAAATCTAAAGCCAGGA+GGG 0.652933 4_2:+57191112 None:intergenic
AAGTGGATCAAAGCAAATTG+GGG 0.655184 4_2:-57190539 Msa0609730:CDS
GATCTATAAGAAGAAGCACA+TGG 0.656336 4_2:-57190117 Msa0609730:CDS
TATAACAGGACTAGTACAAG+TGG 0.658205 4_2:+57189618 None:intergenic
AGAAAGAAAGTACCCAAATG+GGG 0.672302 4_2:-57190626 Msa0609730:CDS
CTTCAGGTATGATAGATGCA+GGG 0.675202 4_2:+57191031 None:intergenic
GCAAGCATATTGGATCCATG+AGG 0.703211 4_2:-57190414 Msa0609730:CDS
GGATGAAATCTAAAGCCAGG+AGG 0.707038 4_2:+57191111 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATCTTTTTTTTATTAGT+AGG - chr4_2:57191196-57191215 Msa0609730:five_prime_UTR 10.0%
!!! AATATCTTTTTTTTATTAGT+AGG - chr4_2:57191196-57191215 Msa0609730:five_prime_UTR 10.0%
!! ATTAATTGAGTCAAAAATAT+TGG + chr4_2:57189736-57189755 None:intergenic 15.0%
!!! AATATTTTTGACTCAATTAA+TGG - chr4_2:57189735-57189754 Msa0609730:three_prime_UTR 15.0%
!! TCTATAATAACTAATAATGA+TGG - chr4_2:57190851-57190870 Msa0609730:intron 15.0%
!! ATTAATTGAGTCAAAAATAT+TGG + chr4_2:57189736-57189755 None:intergenic 15.0%
!!! AATATTTTTGACTCAATTAA+TGG - chr4_2:57189735-57189754 Msa0609730:three_prime_UTR 15.0%
!! TCTATAATAACTAATAATGA+TGG - chr4_2:57190851-57190870 Msa0609730:intron 15.0%
!! AATTTATAGATATCAACTTC+AGG + chr4_2:57189880-57189899 None:intergenic 20.0%
!! ATATCTATAAATTTGATCCA+TGG - chr4_2:57189887-57189906 Msa0609730:CDS 20.0%
!! TATCTATAAATTTGATCCAT+GGG - chr4_2:57189888-57189907 Msa0609730:CDS 20.0%
!! TTACAAAGTATATATATACC+AGG + chr4_2:57189919-57189938 None:intergenic 20.0%
!!! CCATTTTCTCAAATTATTAT+CGG + chr4_2:57190074-57190093 None:intergenic 20.0%
!! ATTTATCTGCATTCTATAAT+TGG + chr4_2:57190206-57190225 None:intergenic 20.0%
!! ACAAACAAATATAGCAAAAT+AGG + chr4_2:57190520-57190539 None:intergenic 20.0%
!! AATAAAAATTCACTATGACA+TGG + chr4_2:57190600-57190619 None:intergenic 20.0%
!!! TTCTTTAAATCCTGAATTTT+AGG - chr4_2:57190659-57190678 Msa0609730:CDS 20.0%
!! AAAATAAACACCTAAAATTC+AGG + chr4_2:57190672-57190691 None:intergenic 20.0%
!! AATTTATAGATATCAACTTC+AGG + chr4_2:57189880-57189899 None:intergenic 20.0%
!! ATATCTATAAATTTGATCCA+TGG - chr4_2:57189887-57189906 Msa0609730:CDS 20.0%
!! TATCTATAAATTTGATCCAT+GGG - chr4_2:57189888-57189907 Msa0609730:CDS 20.0%
!! TTACAAAGTATATATATACC+AGG + chr4_2:57189919-57189938 None:intergenic 20.0%
!!! CCATTTTCTCAAATTATTAT+CGG + chr4_2:57190074-57190093 None:intergenic 20.0%
!! ATTTATCTGCATTCTATAAT+TGG + chr4_2:57190206-57190225 None:intergenic 20.0%
!! ACAAACAAATATAGCAAAAT+AGG + chr4_2:57190520-57190539 None:intergenic 20.0%
!! AATAAAAATTCACTATGACA+TGG + chr4_2:57190600-57190619 None:intergenic 20.0%
!!! TTCTTTAAATCCTGAATTTT+AGG - chr4_2:57190659-57190678 Msa0609730:CDS 20.0%
!! AAAATAAACACCTAAAATTC+AGG + chr4_2:57190672-57190691 None:intergenic 20.0%
! CCGATAATAATTTGAGAAAA+TGG - chr4_2:57190071-57190090 Msa0609730:CDS 25.0%
!!! AAATCTTTGGTCTTTTACAA+GGG - chr4_2:57190381-57190400 Msa0609730:intron 25.0%
!! TTGTTCACTTACTTATCTTT+TGG - chr4_2:57190904-57190923 Msa0609730:intron 25.0%
!! CTTTTGGATATGAATTACTT+TGG - chr4_2:57190920-57190939 Msa0609730:intron 25.0%
! CAAATCAACAATTCCAATAT+TGG - chr4_2:57190977-57190996 Msa0609730:intron 25.0%
! TGCATTTGTTTCACAAATAT+TGG + chr4_2:57191085-57191104 None:intergenic 25.0%
! CCGATAATAATTTGAGAAAA+TGG - chr4_2:57190071-57190090 Msa0609730:CDS 25.0%
!!! AAATCTTTGGTCTTTTACAA+GGG - chr4_2:57190381-57190400 Msa0609730:intron 25.0%
!! TTGTTCACTTACTTATCTTT+TGG - chr4_2:57190904-57190923 Msa0609730:intron 25.0%
!! CTTTTGGATATGAATTACTT+TGG - chr4_2:57190920-57190939 Msa0609730:intron 25.0%
! CAAATCAACAATTCCAATAT+TGG - chr4_2:57190977-57190996 Msa0609730:intron 25.0%
! TGCATTTGTTTCACAAATAT+TGG + chr4_2:57191085-57191104 None:intergenic 25.0%
GAGAGGAATTGAATTAATCA+AGG + chr4_2:57189627-57189646 None:intergenic 30.0%
TTGATGTAGCTTGATTACAA+AGG + chr4_2:57189834-57189853 None:intergenic 30.0%
TCTCAAATTATTATCGGTGT+CGG + chr4_2:57190068-57190087 None:intergenic 30.0%
!!! TGTCTGCTTCGTTTTTTATT+AGG - chr4_2:57190174-57190193 Msa0609730:intron 30.0%
AATGCAGATAAATCTGAGTT+TGG - chr4_2:57190213-57190232 Msa0609730:intron 30.0%
ATGCAGATAAATCTGAGTTT+GGG - chr4_2:57190214-57190233 Msa0609730:intron 30.0%
AAAAGTGGATCAAAGCAAAT+TGG - chr4_2:57190351-57190370 Msa0609730:intron 30.0%
AAAGTGGATCAAAGCAAATT+GGG - chr4_2:57190352-57190371 Msa0609730:intron 30.0%
!! GAAATCTTTGGTCTTTTACA+AGG - chr4_2:57190380-57190399 Msa0609730:intron 30.0%
ATAGCAAAATAGGCCAATAA+GGG + chr4_2:57190510-57190529 None:intergenic 30.0%
TATAGCAAAATAGGCCAATA+AGG + chr4_2:57190511-57190530 None:intergenic 30.0%
! ACTATGACATGGAAACTTTT+TGG + chr4_2:57190589-57190608 None:intergenic 30.0%
! GCAAAACTGTTTTACATTGA+CGG - chr4_2:57190630-57190649 Msa0609730:CDS 30.0%
! ATCTATAAGAAGAAGCACAT+GGG - chr4_2:57190776-57190795 Msa0609730:intron 30.0%
AAAAACATTGCAGCAAAAAG+AGG - chr4_2:57190799-57190818 Msa0609730:intron 30.0%
AAGAAATGATGAACCTTACA+AGG - chr4_2:57190879-57190898 Msa0609730:intron 30.0%
GTTAAACCATCAGATAAGAT+TGG + chr4_2:57190947-57190966 None:intergenic 30.0%
! CTTATCTGATGGTTTAACTT+TGG - chr4_2:57190949-57190968 Msa0609730:intron 30.0%
ATAAGGGTCAATTCCAATAT+TGG + chr4_2:57190993-57191012 None:intergenic 30.0%
! TAATGATTGGTCATTTCAAC+TGG + chr4_2:57191028-57191047 None:intergenic 30.0%
TGAATCTGCTTCATAATGAT+TGG + chr4_2:57191041-57191060 None:intergenic 30.0%
! TTTCACAAATATTGGCTGAT+TGG + chr4_2:57191077-57191096 None:intergenic 30.0%
TTATTAGTAGGAATCGAACT+CGG - chr4_2:57191208-57191227 Msa0609730:five_prime_UTR 30.0%
GAGAGGAATTGAATTAATCA+AGG + chr4_2:57189627-57189646 None:intergenic 30.0%
TTGATGTAGCTTGATTACAA+AGG + chr4_2:57189834-57189853 None:intergenic 30.0%
TCTCAAATTATTATCGGTGT+CGG + chr4_2:57190068-57190087 None:intergenic 30.0%
!!! TGTCTGCTTCGTTTTTTATT+AGG - chr4_2:57190174-57190193 Msa0609730:intron 30.0%
AATGCAGATAAATCTGAGTT+TGG - chr4_2:57190213-57190232 Msa0609730:intron 30.0%
ATGCAGATAAATCTGAGTTT+GGG - chr4_2:57190214-57190233 Msa0609730:intron 30.0%
AAAAGTGGATCAAAGCAAAT+TGG - chr4_2:57190351-57190370 Msa0609730:intron 30.0%
AAAGTGGATCAAAGCAAATT+GGG - chr4_2:57190352-57190371 Msa0609730:intron 30.0%
!! GAAATCTTTGGTCTTTTACA+AGG - chr4_2:57190380-57190399 Msa0609730:intron 30.0%
ATAGCAAAATAGGCCAATAA+GGG + chr4_2:57190510-57190529 None:intergenic 30.0%
TATAGCAAAATAGGCCAATA+AGG + chr4_2:57190511-57190530 None:intergenic 30.0%
! ACTATGACATGGAAACTTTT+TGG + chr4_2:57190589-57190608 None:intergenic 30.0%
! GCAAAACTGTTTTACATTGA+CGG - chr4_2:57190630-57190649 Msa0609730:CDS 30.0%
! ATCTATAAGAAGAAGCACAT+GGG - chr4_2:57190776-57190795 Msa0609730:intron 30.0%
AAAAACATTGCAGCAAAAAG+AGG - chr4_2:57190799-57190818 Msa0609730:intron 30.0%
AAGAAATGATGAACCTTACA+AGG - chr4_2:57190879-57190898 Msa0609730:intron 30.0%
GTTAAACCATCAGATAAGAT+TGG + chr4_2:57190947-57190966 None:intergenic 30.0%
! CTTATCTGATGGTTTAACTT+TGG - chr4_2:57190949-57190968 Msa0609730:intron 30.0%
ATAAGGGTCAATTCCAATAT+TGG + chr4_2:57190993-57191012 None:intergenic 30.0%
! TAATGATTGGTCATTTCAAC+TGG + chr4_2:57191028-57191047 None:intergenic 30.0%
TGAATCTGCTTCATAATGAT+TGG + chr4_2:57191041-57191060 None:intergenic 30.0%
! TTTCACAAATATTGGCTGAT+TGG + chr4_2:57191077-57191096 None:intergenic 30.0%
TTATTAGTAGGAATCGAACT+CGG - chr4_2:57191208-57191227 Msa0609730:five_prime_UTR 30.0%
! AAAATTTAAGACGCTTCGAG+AGG + chr4_2:57189644-57189663 None:intergenic 35.0%
TAGATTTCATCCAACTGATG+AGG - chr4_2:57189792-57189811 Msa0609730:exon 35.0%
ACAATTAGTTCCTCATCAGT+TGG + chr4_2:57189805-57189824 None:intergenic 35.0%
TATGTGTTAGTGACGTGTAT+TGG - chr4_2:57190113-57190132 Msa0609730:CDS 35.0%
TGCAGATAAATCTGAGTTTG+GGG - chr4_2:57190215-57190234 Msa0609730:intron 35.0%
TTGGGTACTTTCTTTCTCTT+GGG + chr4_2:57190263-57190282 None:intergenic 35.0%
TTTGGGTACTTTCTTTCTCT+TGG + chr4_2:57190264-57190283 None:intergenic 35.0%
!! AGAGAAAGAAAGTACCCAAA+TGG - chr4_2:57190264-57190283 Msa0609730:intron 35.0%
!! GAGAAAGAAAGTACCCAAAT+GGG - chr4_2:57190265-57190284 Msa0609730:intron 35.0%
!! AGAAAGAAAGTACCCAAATG+GGG - chr4_2:57190266-57190285 Msa0609730:intron 35.0%
AAGTGGATCAAAGCAAATTG+GGG - chr4_2:57190353-57190372 Msa0609730:intron 35.0%
AATTGGGGTGAAGAAATCTT+TGG - chr4_2:57190368-57190387 Msa0609730:intron 35.0%
ATGCATGAGTACAGATTGAT+TGG - chr4_2:57190438-57190457 Msa0609730:CDS 35.0%
AAGCAAACTAGCAAGCATAT+TGG - chr4_2:57190468-57190487 Msa0609730:CDS 35.0%
TATGATTGACCTTTCCTTTG+TGG - chr4_2:57190713-57190732 Msa0609730:intron 35.0%
! GATCTATAAGAAGAAGCACA+TGG - chr4_2:57190775-57190794 Msa0609730:intron 35.0%
TAAGTGAACAACTCCTTGTA+AGG + chr4_2:57190895-57190914 None:intergenic 35.0%
TTTGGTCCAATCTTATCTGA+TGG - chr4_2:57190938-57190957 Msa0609730:intron 35.0%
AATCGAACTCGGTATCTATT+TGG - chr4_2:57191219-57191238 Msa0609730:five_prime_UTR 35.0%
ATCGAACTCGGTATCTATTT+GGG - chr4_2:57191220-57191239 Msa0609730:five_prime_UTR 35.0%
! AAAATTTAAGACGCTTCGAG+AGG + chr4_2:57189644-57189663 None:intergenic 35.0%
TAGATTTCATCCAACTGATG+AGG - chr4_2:57189792-57189811 Msa0609730:exon 35.0%
ACAATTAGTTCCTCATCAGT+TGG + chr4_2:57189805-57189824 None:intergenic 35.0%
TATGTGTTAGTGACGTGTAT+TGG - chr4_2:57190113-57190132 Msa0609730:CDS 35.0%
TGCAGATAAATCTGAGTTTG+GGG - chr4_2:57190215-57190234 Msa0609730:intron 35.0%
TTGGGTACTTTCTTTCTCTT+GGG + chr4_2:57190263-57190282 None:intergenic 35.0%
TTTGGGTACTTTCTTTCTCT+TGG + chr4_2:57190264-57190283 None:intergenic 35.0%
!! AGAGAAAGAAAGTACCCAAA+TGG - chr4_2:57190264-57190283 Msa0609730:intron 35.0%
!! GAGAAAGAAAGTACCCAAAT+GGG - chr4_2:57190265-57190284 Msa0609730:intron 35.0%
!! AGAAAGAAAGTACCCAAATG+GGG - chr4_2:57190266-57190285 Msa0609730:intron 35.0%
AAGTGGATCAAAGCAAATTG+GGG - chr4_2:57190353-57190372 Msa0609730:intron 35.0%
AATTGGGGTGAAGAAATCTT+TGG - chr4_2:57190368-57190387 Msa0609730:intron 35.0%
ATGCATGAGTACAGATTGAT+TGG - chr4_2:57190438-57190457 Msa0609730:CDS 35.0%
AAGCAAACTAGCAAGCATAT+TGG - chr4_2:57190468-57190487 Msa0609730:CDS 35.0%
TATGATTGACCTTTCCTTTG+TGG - chr4_2:57190713-57190732 Msa0609730:intron 35.0%
! GATCTATAAGAAGAAGCACA+TGG - chr4_2:57190775-57190794 Msa0609730:intron 35.0%
TAAGTGAACAACTCCTTGTA+AGG + chr4_2:57190895-57190914 None:intergenic 35.0%
TTTGGTCCAATCTTATCTGA+TGG - chr4_2:57190938-57190957 Msa0609730:intron 35.0%
AATCGAACTCGGTATCTATT+TGG - chr4_2:57191219-57191238 Msa0609730:five_prime_UTR 35.0%
ATCGAACTCGGTATCTATTT+GGG - chr4_2:57191220-57191239 Msa0609730:five_prime_UTR 35.0%
! GATGAAATCTAAAGCCAGGA+GGG + chr4_2:57189783-57189802 None:intergenic 40.0%
! GTTGGATGAAATCTAAAGCC+AGG + chr4_2:57189787-57189806 None:intergenic 40.0%
CTTCAGGTATGATAGATGCA+GGG + chr4_2:57189864-57189883 None:intergenic 40.0%
ACTTCAGGTATGATAGATGC+AGG + chr4_2:57189865-57189884 None:intergenic 40.0%
TATATACCAGGCAATTCCCA+TGG + chr4_2:57189907-57189926 None:intergenic 40.0%
! ACGTCTTCAATCTGAAGTGT+CGG - chr4_2:57190138-57190157 Msa0609730:CDS 40.0%
TATTAGGCCTAACCCCATTT+GGG + chr4_2:57190281-57190300 None:intergenic 40.0%
CCAGACAAAGTTGCTCTATT+AGG + chr4_2:57190297-57190316 None:intergenic 40.0%
CCTAATAGAGCAACTTTGTC+TGG - chr4_2:57190294-57190313 Msa0609730:intron 40.0%
GAGCAACTTTGTCTGGATAT+TGG - chr4_2:57190301-57190320 Msa0609730:intron 40.0%
TCTGGATATTGGAAAGCTAC+TGG - chr4_2:57190312-57190331 Msa0609730:intron 40.0%
ACAGACAAGGCAATCAAAAG+TGG - chr4_2:57190336-57190355 Msa0609730:intron 40.0%
!! CAATCAGTTTTGACACCCTT+TGG + chr4_2:57190414-57190433 None:intergenic 40.0%
!! CAAAGGGTGTCAAAACTGAT+TGG - chr4_2:57190412-57190431 Msa0609730:intron 40.0%
CAAGCATATTGGATCCATGA+GGG - chr4_2:57190479-57190498 Msa0609730:CDS 40.0%
CACATACAACCACAAAGGAA+AGG + chr4_2:57190725-57190744 None:intergenic 40.0%
GATGACACATACAACCACAA+AGG + chr4_2:57190730-57190749 None:intergenic 40.0%
!! TAGATGACTGGGTTTTATGC+AGG - chr4_2:57190753-57190772 Msa0609730:intron 40.0%
! CTGGCTGAGGTTTTACATAA+GGG + chr4_2:57191009-57191028 None:intergenic 40.0%
! ACTGGCTGAGGTTTTACATA+AGG + chr4_2:57191010-57191029 None:intergenic 40.0%
! GATGAAATCTAAAGCCAGGA+GGG + chr4_2:57189783-57189802 None:intergenic 40.0%
! GTTGGATGAAATCTAAAGCC+AGG + chr4_2:57189787-57189806 None:intergenic 40.0%
CTTCAGGTATGATAGATGCA+GGG + chr4_2:57189864-57189883 None:intergenic 40.0%
ACTTCAGGTATGATAGATGC+AGG + chr4_2:57189865-57189884 None:intergenic 40.0%
TATATACCAGGCAATTCCCA+TGG + chr4_2:57189907-57189926 None:intergenic 40.0%
! ACGTCTTCAATCTGAAGTGT+CGG - chr4_2:57190138-57190157 Msa0609730:CDS 40.0%
TATTAGGCCTAACCCCATTT+GGG + chr4_2:57190281-57190300 None:intergenic 40.0%
CCAGACAAAGTTGCTCTATT+AGG + chr4_2:57190297-57190316 None:intergenic 40.0%
CCTAATAGAGCAACTTTGTC+TGG - chr4_2:57190294-57190313 Msa0609730:intron 40.0%
GAGCAACTTTGTCTGGATAT+TGG - chr4_2:57190301-57190320 Msa0609730:intron 40.0%
TCTGGATATTGGAAAGCTAC+TGG - chr4_2:57190312-57190331 Msa0609730:intron 40.0%
ACAGACAAGGCAATCAAAAG+TGG - chr4_2:57190336-57190355 Msa0609730:intron 40.0%
!! CAATCAGTTTTGACACCCTT+TGG + chr4_2:57190414-57190433 None:intergenic 40.0%
!! CAAAGGGTGTCAAAACTGAT+TGG - chr4_2:57190412-57190431 Msa0609730:intron 40.0%
CAAGCATATTGGATCCATGA+GGG - chr4_2:57190479-57190498 Msa0609730:CDS 40.0%
CACATACAACCACAAAGGAA+AGG + chr4_2:57190725-57190744 None:intergenic 40.0%
GATGACACATACAACCACAA+AGG + chr4_2:57190730-57190749 None:intergenic 40.0%
!! TAGATGACTGGGTTTTATGC+AGG - chr4_2:57190753-57190772 Msa0609730:intron 40.0%
! CTGGCTGAGGTTTTACATAA+GGG + chr4_2:57191009-57191028 None:intergenic 40.0%
! ACTGGCTGAGGTTTTACATA+AGG + chr4_2:57191010-57191029 None:intergenic 40.0%
! GGATGAAATCTAAAGCCAGG+AGG + chr4_2:57189784-57189803 None:intergenic 45.0%
TTTGATCCATGGGAATTGCC+TGG - chr4_2:57189898-57189917 Msa0609730:CDS 45.0%
CTGAGTTTGGGGAGAATGAA+TGG - chr4_2:57190226-57190245 Msa0609730:intron 45.0%
!! GAAAGTACCCAAATGGGGTT+AGG - chr4_2:57190271-57190290 Msa0609730:intron 45.0%
CTATTAGGCCTAACCCCATT+TGG + chr4_2:57190282-57190301 None:intergenic 45.0%
!! CTTTGGTCTTTTACAAGGGC+AGG - chr4_2:57190385-57190404 Msa0609730:intron 45.0%
!! TCAGTTTTGACACCCTTTGG+TGG + chr4_2:57190411-57190430 None:intergenic 45.0%
GCAAGCATATTGGATCCATG+AGG - chr4_2:57190478-57190497 Msa0609730:CDS 45.0%
CAATAAGGGCTTTACCCTCA+TGG + chr4_2:57190496-57190515 None:intergenic 45.0%
CATGAGGGTAAAGCCCTTAT+TGG - chr4_2:57190494-57190513 Msa0609730:CDS 45.0%
TGTGTCATCAGCTAGATGAC+TGG - chr4_2:57190741-57190760 Msa0609730:intron 45.0%
GTGTCATCAGCTAGATGACT+GGG - chr4_2:57190742-57190761 Msa0609730:intron 45.0%
TTGGTCATTTCAACTGGCTG+AGG + chr4_2:57191022-57191041 None:intergenic 45.0%
! ACAGGACTAGTACAAGTGGT+TGG + chr4_2:57191273-57191292 None:intergenic 45.0%
! GGATGAAATCTAAAGCCAGG+AGG + chr4_2:57189784-57189803 None:intergenic 45.0%
TTTGATCCATGGGAATTGCC+TGG - chr4_2:57189898-57189917 Msa0609730:CDS 45.0%
CTGAGTTTGGGGAGAATGAA+TGG - chr4_2:57190226-57190245 Msa0609730:intron 45.0%
!! GAAAGTACCCAAATGGGGTT+AGG - chr4_2:57190271-57190290 Msa0609730:intron 45.0%
CTATTAGGCCTAACCCCATT+TGG + chr4_2:57190282-57190301 None:intergenic 45.0%
!! CTTTGGTCTTTTACAAGGGC+AGG - chr4_2:57190385-57190404 Msa0609730:intron 45.0%
!! TCAGTTTTGACACCCTTTGG+TGG + chr4_2:57190411-57190430 None:intergenic 45.0%
GCAAGCATATTGGATCCATG+AGG - chr4_2:57190478-57190497 Msa0609730:CDS 45.0%
CAATAAGGGCTTTACCCTCA+TGG + chr4_2:57190496-57190515 None:intergenic 45.0%
CATGAGGGTAAAGCCCTTAT+TGG - chr4_2:57190494-57190513 Msa0609730:CDS 45.0%
TGTGTCATCAGCTAGATGAC+TGG - chr4_2:57190741-57190760 Msa0609730:intron 45.0%
GTGTCATCAGCTAGATGACT+GGG - chr4_2:57190742-57190761 Msa0609730:intron 45.0%
TTGGTCATTTCAACTGGCTG+AGG + chr4_2:57191022-57191041 None:intergenic 45.0%
! ACAGGACTAGTACAAGTGGT+TGG + chr4_2:57191273-57191292 None:intergenic 45.0%
GGTATGATAGATGCAGGGCA+TGG + chr4_2:57189859-57189878 None:intergenic 50.0%
GAAAGCTACTGGCACAGACA+AGG - chr4_2:57190323-57190342 Msa0609730:intron 50.0%
! GTACAAGTGGTTGGTGCGTA+AGG + chr4_2:57191264-57191283 None:intergenic 50.0%
GGTATGATAGATGCAGGGCA+TGG + chr4_2:57189859-57189878 None:intergenic 50.0%
GAAAGCTACTGGCACAGACA+AGG - chr4_2:57190323-57190342 Msa0609730:intron 50.0%
! GTACAAGTGGTTGGTGCGTA+AGG + chr4_2:57191264-57191283 None:intergenic 50.0%
ACAAGCTATGAGCTCCCTCC+TGG - chr4_2:57189766-57189785 Msa0609730:three_prime_UTR 55.0%
TTACAAGGGCAGGCCACCAA+AGG - chr4_2:57190395-57190414 Msa0609730:intron 55.0%
TACAAGGGCAGGCCACCAAA+GGG - chr4_2:57190396-57190415 Msa0609730:intron 55.0%
ACAAGCTATGAGCTCCCTCC+TGG - chr4_2:57189766-57189785 Msa0609730:three_prime_UTR 55.0%
TTACAAGGGCAGGCCACCAA+AGG - chr4_2:57190395-57190414 Msa0609730:intron 55.0%
TACAAGGGCAGGCCACCAAA+GGG - chr4_2:57190396-57190415 Msa0609730:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 57189619 57191295 57189619 ID=Msa0609730;Name=Msa0609730
chr4_2 mRNA 57189619 57191295 57189619 ID=Msa0609730-mRNA-1;Parent=Msa0609730;Name=Msa0609730-mRNA-1;_AED=0.10;_eAED=0.10;_QI=135|1|1|1|1|1|3|175|271
chr4_2 exon 57189619 57190162 57189619 ID=Msa0609730-mRNA-1:exon:14874;Parent=Msa0609730-mRNA-1
chr4_2 exon 57190414 57190694 57190414 ID=Msa0609730-mRNA-1:exon:14873;Parent=Msa0609730-mRNA-1
chr4_2 exon 57190995 57191295 57190995 ID=Msa0609730-mRNA-1:exon:14872;Parent=Msa0609730-mRNA-1
chr4_2 five_prime_UTR 57191161 57191295 57191161 ID=Msa0609730-mRNA-1:five_prime_utr;Parent=Msa0609730-mRNA-1
chr4_2 CDS 57190995 57191160 57190995 ID=Msa0609730-mRNA-1:cds;Parent=Msa0609730-mRNA-1
chr4_2 CDS 57190414 57190694 57190414 ID=Msa0609730-mRNA-1:cds;Parent=Msa0609730-mRNA-1
chr4_2 CDS 57189794 57190162 57189794 ID=Msa0609730-mRNA-1:cds;Parent=Msa0609730-mRNA-1
chr4_2 three_prime_UTR 57189619 57189793 57189619 ID=Msa0609730-mRNA-1:three_prime_utr;Parent=Msa0609730-mRNA-1
Gene Sequence

>Msa0609730

ATGGAGAGTAGTACAAGCTATGAGCTCCCTCCTGGCTTTAGATTTCATCCAACTGATGAGGAACTAATTGTGCATTACCTTTGTAATCAAGCTACATCAAAGCCATGCCCTGCATCTATCATACCTGAAGTTGATATCTATAAATTTGATCCATGGGAATTGCCTGATAAATCTGAGTTTGGGGAGAATGAATGGTATTTCTTTAGCCCAAGAGAAAGAAAGTACCCAAATGGGGTTAGGCCTAATAGAGCAACTTTGTCTGGATATTGGAAAGCTACTGGCACAGACAAGGCAATCAAAAGTGGATCAAAGCAAATTGGGGTGAAGAAATCTTTGGTCTTTTACAAGGGCAGGCCACCAAAGGGTGTCAAAACTGATTGGATTATGCATGAGTACAGATTGATTGGATCACAAAAGCAAACTAGCAAGCATATTGGATCCATGAGGCTAGATGACTGGGTTTTATGCAGGATCTATAAGAAGAAGCACATGGGAAAAACATTGCAGCAAAAAGAGGACTATTCAACAACACATCAATTTAATGATTCTATAATAACTAATAATGATGGTGAACAAGAAATGATGAACCTTACAAGGAGTTGTTCACTTACTTATCTTTTGGATATGAATTACTTTGGTCCAATCTTATCTGATGGTTTAACTTTGGATTTTCAAATCAACAATTCCAATATTGGAATTGACCCTTATGTAAAACCTCAGCCAGTTGAAATGACCAATCATTATGAAGCAGATTCACATAGTAGCATCACCAATCAGCCAATATTTGTGAAACAAATGCATAATTATTTAGCATAA
Protein sequence

>Msa0609730

MESSTSYELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFGENEWYFFSPRERKYPNGVRPNRATLSGYWKATGTDKAIKSGSKQIGVKKSLVFYKGRPPKGVKTDWIMHEYRLIGSQKQTSKHIGSMRLDDWVLCRIYKKKHMGKTLQQKEDYSTTHQFNDSIITNNDGEQEMMNLTRSCSLTYLLDMNYFGPILSDGLTLDFQINNSNIGIDPYVKPQPVEMTNHYEADSHSSITNQPIFVKQMHNYLA*