Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610820 | KEH30840.1 | 88.816 | 152 | 12 | 1 | 13 | 164 | 38 | 184 | 2.31e-92 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610820 | sp|Q6X7K0|WOX1_ARATH | 53.659 | 123 | 45 | 2 | 37 | 156 | 74 | 187 | 9.35e-35 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0610820 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610820 | MtrunA17_Chr4g0043891 | 92.800 | 125 | 2 | 2 | 32 | 156 | 1 | 118 | 5.96e-78 | 232 |
| Msa0610820 | MtrunA17_Chr8g0392991 | 60.345 | 116 | 35 | 3 | 37 | 152 | 94 | 198 | 7.48e-37 | 130 |
| Msa0610820 | MtrunA17_Chr7g0238431 | 71.429 | 70 | 20 | 0 | 32 | 101 | 1 | 70 | 3.42e-31 | 111 |
| Msa0610820 | MtrunA17_Chr5g0436661 | 39.552 | 134 | 71 | 2 | 39 | 162 | 33 | 166 | 2.34e-27 | 101 |
| Msa0610820 | MtrunA17_Chr5g0405351 | 67.164 | 67 | 21 | 1 | 35 | 100 | 26 | 92 | 3.36e-27 | 103 |
| Msa0610820 | MtrunA17_Chr1g0153171 | 68.750 | 64 | 20 | 0 | 38 | 101 | 89 | 152 | 1.77e-26 | 100 |
| Msa0610820 | MtrunA17_Chr8g0385441 | 84.615 | 52 | 8 | 0 | 50 | 101 | 93 | 144 | 2.25e-26 | 98.2 |
| Msa0610820 | MtrunA17_Chr3g0125111 | 84.615 | 52 | 8 | 0 | 50 | 101 | 91 | 142 | 4.08e-26 | 97.4 |
| Msa0610820 | MtrunA17_Chr4g0031341 | 66.667 | 63 | 21 | 0 | 39 | 101 | 25 | 87 | 7.68e-26 | 99.0 |
| Msa0610820 | MtrunA17_Chr7g0223471 | 47.761 | 67 | 35 | 0 | 34 | 100 | 42 | 108 | 1.48e-18 | 81.3 |
| Msa0610820 | MtrunA17_Chr1g0212511 | 46.341 | 82 | 38 | 1 | 39 | 120 | 85 | 160 | 3.30e-18 | 79.0 |
| Msa0610820 | MtrunA17_Chr2g0283141 | 44.928 | 69 | 38 | 0 | 34 | 102 | 50 | 118 | 6.19e-18 | 79.7 |
| Msa0610820 | MtrunA17_Chr3g0144021 | 42.623 | 61 | 35 | 0 | 39 | 99 | 82 | 142 | 7.96e-14 | 66.2 |
| Msa0610820 | MtrunA17_Chr6g0460691 | 38.961 | 77 | 47 | 0 | 38 | 114 | 31 | 107 | 4.33e-13 | 65.5 |
| Msa0610820 | MtrunA17_Chr7g0222981 | 36.559 | 93 | 49 | 1 | 39 | 131 | 68 | 150 | 5.24e-13 | 63.5 |
| Msa0610820 | MtrunA17_Chr7g0254251 | 45.098 | 51 | 28 | 0 | 38 | 88 | 27 | 77 | 9.25e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610820 | AT3G18010.1 | 53.659 | 123 | 45 | 2 | 37 | 156 | 74 | 187 | 9.51e-36 | 127 |
| Msa0610820 | AT2G28610.1 | 65.714 | 70 | 24 | 0 | 32 | 101 | 1 | 70 | 3.22e-29 | 107 |
| Msa0610820 | AT5G59340.1 | 64.706 | 68 | 24 | 0 | 37 | 104 | 12 | 79 | 1.69e-27 | 103 |
| Msa0610820 | AT3G11260.1 | 59.701 | 67 | 27 | 0 | 39 | 105 | 24 | 90 | 3.27e-26 | 98.6 |
| Msa0610820 | AT1G46480.2 | 63.768 | 69 | 24 | 1 | 33 | 101 | 85 | 152 | 4.53e-26 | 98.2 |
| Msa0610820 | AT2G17950.1 | 60.759 | 79 | 30 | 1 | 35 | 112 | 34 | 112 | 5.23e-26 | 100 |
| Msa0610820 | AT2G01500.1 | 74.545 | 55 | 14 | 0 | 39 | 93 | 61 | 115 | 1.44e-25 | 99.0 |
| Msa0610820 | AT1G46480.1 | 63.768 | 69 | 24 | 1 | 33 | 101 | 85 | 152 | 2.66e-25 | 97.8 |
| Msa0610820 | AT5G05770.1 | 59.375 | 64 | 26 | 0 | 39 | 102 | 29 | 92 | 8.14e-23 | 88.2 |
| Msa0610820 | AT2G33880.1 | 44.286 | 70 | 39 | 0 | 34 | 103 | 50 | 119 | 2.14e-17 | 78.2 |
| Msa0610820 | AT2G33880.2 | 44.286 | 70 | 39 | 0 | 34 | 103 | 50 | 119 | 2.36e-17 | 78.2 |
| Msa0610820 | AT5G45980.1 | 38.824 | 85 | 52 | 0 | 16 | 100 | 32 | 116 | 9.71e-17 | 76.3 |
| Msa0610820 | AT4G35550.1 | 49.180 | 61 | 31 | 0 | 39 | 99 | 99 | 159 | 9.81e-16 | 72.8 |
| Msa0610820 | AT1G20700.2 | 45.000 | 60 | 33 | 0 | 39 | 98 | 33 | 92 | 2.70e-14 | 66.6 |
| Msa0610820 | AT1G20700.3 | 45.000 | 60 | 33 | 0 | 39 | 98 | 95 | 154 | 8.41e-14 | 66.6 |
| Msa0610820 | AT1G20700.1 | 45.000 | 60 | 33 | 0 | 39 | 98 | 95 | 154 | 9.75e-14 | 66.6 |
| Msa0610820 | AT3G03660.1 | 49.057 | 53 | 27 | 0 | 38 | 90 | 32 | 84 | 6.24e-13 | 65.1 |
| Msa0610820 | AT3G03660.2 | 49.057 | 53 | 27 | 0 | 38 | 90 | 32 | 84 | 8.82e-13 | 65.1 |
| Msa0610820 | AT3G03660.4 | 49.057 | 53 | 27 | 0 | 38 | 90 | 32 | 84 | 1.05e-12 | 64.7 |
| Msa0610820 | AT3G03660.3 | 49.057 | 53 | 27 | 0 | 38 | 90 | 32 | 84 | 1.41e-12 | 64.7 |
| Msa0610820 | AT5G17810.1 | 43.396 | 53 | 30 | 0 | 38 | 90 | 20 | 72 | 3.43e-11 | 60.1 |
| Msa0610820 | AT5G17810.2 | 43.396 | 53 | 30 | 0 | 38 | 90 | 20 | 72 | 3.43e-11 | 60.1 |
| Msa0610820 | AT5G17810.3 | 43.396 | 53 | 30 | 0 | 38 | 90 | 20 | 72 | 3.44e-11 | 60.1 |
Find 29 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTCTCGCCTTGTGATTC+TGG | 0.194023 | 4_2:-58712646 | None:intergenic |
| GCTTCGCAGCTTCGACAATT+TGG | 0.206061 | 4_2:+58712590 | Msa0610820:CDS |
| ATTTCTCTTGTCTTTGTTGA+TGG | 0.263889 | 4_2:+58713343 | Msa0610820:CDS |
| AGAGAAAGAGAAGTACGTTA+TGG | 0.359866 | 4_2:+58712733 | Msa0610820:CDS |
| CGACAATTTGGAAAGATTGA+AGG | 0.396848 | 4_2:+58712602 | Msa0610820:CDS |
| GAGAAAGAGAAGTACGTTAT+GGG | 0.401887 | 4_2:+58712734 | Msa0610820:CDS |
| GAAGCTGCGAAGCTATTTGT+TGG | 0.428703 | 4_2:-58712580 | None:intergenic |
| CTTGCCTATACAATTCTTCA+AGG | 0.428836 | 4_2:-58712529 | None:intergenic |
| TAGTCCTTGAAGAATTGTAT+AGG | 0.431151 | 4_2:+58712525 | Msa0610820:CDS |
| GTTGGACTCCACCTTGAACT+TGG | 0.444756 | 4_2:-58712488 | None:intergenic |
| CTTGAGATGGAGGAAACAAT+TGG | 0.464032 | 4_2:+58712686 | Msa0610820:CDS |
| TGCATCCTCAACCAAGTTCA+AGG | 0.472729 | 4_2:+58712477 | Msa0610820:CDS |
| CTCCACCTTGAACTTGGTTG+AGG | 0.502185 | 4_2:-58712482 | None:intergenic |
| TGTTGGATTTGTTCAGCTGA+TGG | 0.503667 | 4_2:-58712563 | None:intergenic |
| TTGTTCACTGCAGTTTGAAG+TGG | 0.506780 | 4_2:-58713307 | None:intergenic |
| TCAAGGACTAGTAATTGAAC+TGG | 0.509163 | 4_2:-58712512 | None:intergenic |
| GAAGCGTCGTCGCCTTGAGA+TGG | 0.530642 | 4_2:+58712673 | Msa0610820:CDS |
| ACTAGTAATTGAACTGGTGT+TGG | 0.537149 | 4_2:-58712506 | None:intergenic |
| CTTGAAGAATTGTATAGGCA+AGG | 0.540070 | 4_2:+58712530 | Msa0610820:CDS |
| TCAGAAAAGCAAGAAGCTGC+AGG | 0.540109 | 4_2:+58712761 | Msa0610820:CDS |
| CAATTGTTTCCTCCATCTCA+AGG | 0.548253 | 4_2:-58712685 | None:intergenic |
| GCGTCGTCGCCTTGAGATGG+AGG | 0.576407 | 4_2:+58712676 | Msa0610820:CDS |
| TTGAAGAATTGTATAGGCAA+GGG | 0.590766 | 4_2:+58712531 | Msa0610820:CDS |
| ACAGCTCATGCAGCTGAGCA+AGG | 0.595931 | 4_2:+58712440 | Msa0610820:CDS |
| AAACTGCAGTGAACAAGCAG+AGG | 0.632631 | 4_2:+58713314 | Msa0610820:CDS |
| AGTTAAAGAGACAAAGAAGT+GGG | 0.667079 | 4_2:+58713281 | Msa0610820:CDS |
| CTATTGGTTCCAGAATCACA+AGG | 0.685006 | 4_2:+58712637 | Msa0610820:CDS |
| GAGTTAAAGAGACAAAGAAG+TGG | 0.689037 | 4_2:+58713280 | Msa0610820:CDS |
| ATCCTCAACCAAGTTCAAGG+TGG | 0.762805 | 4_2:+58712480 | Msa0610820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTTCTTTCAAATA+TGG | - | chr4_2:58713107-58713126 | None:intergenic | 10.0% |
| !!! | AAATTTTTTTCTTTCAAATA+TGG | - | chr4_2:58713107-58713126 | None:intergenic | 10.0% |
| !!! | TTGTTGTTTATTCAATTTAA+TGG | + | chr4_2:58713128-58713147 | Msa0610820:intron | 15.0% |
| !!! | ATTGCTATTTTTGAAATTTT+AGG | + | chr4_2:58713159-58713178 | Msa0610820:intron | 15.0% |
| !!! | TTGTTGTTTATTCAATTTAA+TGG | + | chr4_2:58713128-58713147 | Msa0610820:intron | 15.0% |
| !!! | ATTGCTATTTTTGAAATTTT+AGG | + | chr4_2:58713159-58713178 | Msa0610820:intron | 15.0% |
| !! | TCATGAGTGAAATATAATAT+AGG | - | chr4_2:58712845-58712864 | None:intergenic | 20.0% |
| !! | AGAAAAAAAAATGACCAAAT+GGG | - | chr4_2:58712967-58712986 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAATGACCAAA+TGG | - | chr4_2:58712968-58712987 | None:intergenic | 20.0% |
| !!! | CTAAAATCTCTAAAATTGTA+GGG | - | chr4_2:58713000-58713019 | None:intergenic | 20.0% |
| !!! | ACTATACTTTTAAAGATGTT+AGG | - | chr4_2:58713083-58713102 | None:intergenic | 20.0% |
| !! | TCATGAGTGAAATATAATAT+AGG | - | chr4_2:58712845-58712864 | None:intergenic | 20.0% |
| !! | AGAAAAAAAAATGACCAAAT+GGG | - | chr4_2:58712967-58712986 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAATGACCAAA+TGG | - | chr4_2:58712968-58712987 | None:intergenic | 20.0% |
| !!! | CTAAAATCTCTAAAATTGTA+GGG | - | chr4_2:58713000-58713019 | None:intergenic | 20.0% |
| !!! | ACTATACTTTTAAAGATGTT+AGG | - | chr4_2:58713083-58713102 | None:intergenic | 20.0% |
| ! | AAGGAAAAAATGTGTTCTAT+TGG | + | chr4_2:58712621-58712640 | Msa0610820:CDS | 25.0% |
| ! | TACAGCTAGATATTATCTTT+AGG | + | chr4_2:58712786-58712805 | Msa0610820:intron | 25.0% |
| ! | ACAGCTAGATATTATCTTTA+GGG | + | chr4_2:58712787-58712806 | Msa0610820:intron | 25.0% |
| !!! | ATTATCTTTAGGGTTATTCA+AGG | + | chr4_2:58712797-58712816 | Msa0610820:intron | 25.0% |
| !! | AAAGATACATAGCTTTTGTA+AGG | + | chr4_2:58712901-58712920 | Msa0610820:intron | 25.0% |
| ! | AAATATCAATTTAGCCCATT+TGG | + | chr4_2:58712950-58712969 | Msa0610820:intron | 25.0% |
| !!! | CCTAAAATCTCTAAAATTGT+AGG | - | chr4_2:58713001-58713020 | None:intergenic | 25.0% |
| !!! | CCTACAATTTTAGAGATTTT+AGG | + | chr4_2:58712998-58713017 | Msa0610820:intron | 25.0% |
| ! | TCAATATGATATTCTTGCAT+AGG | + | chr4_2:58713052-58713071 | Msa0610820:intron | 25.0% |
| !! | ATGTATATGAGTTGAATTTG+TGG | + | chr4_2:58713228-58713247 | Msa0610820:intron | 25.0% |
| ! | AAGGAAAAAATGTGTTCTAT+TGG | + | chr4_2:58712621-58712640 | Msa0610820:CDS | 25.0% |
| ! | TACAGCTAGATATTATCTTT+AGG | + | chr4_2:58712786-58712805 | Msa0610820:intron | 25.0% |
| ! | ACAGCTAGATATTATCTTTA+GGG | + | chr4_2:58712787-58712806 | Msa0610820:intron | 25.0% |
| !!! | ATTATCTTTAGGGTTATTCA+AGG | + | chr4_2:58712797-58712816 | Msa0610820:intron | 25.0% |
| !! | AAAGATACATAGCTTTTGTA+AGG | + | chr4_2:58712901-58712920 | Msa0610820:intron | 25.0% |
| ! | AAATATCAATTTAGCCCATT+TGG | + | chr4_2:58712950-58712969 | Msa0610820:intron | 25.0% |
| !!! | CCTAAAATCTCTAAAATTGT+AGG | - | chr4_2:58713001-58713020 | None:intergenic | 25.0% |
| !!! | CCTACAATTTTAGAGATTTT+AGG | + | chr4_2:58712998-58713017 | Msa0610820:intron | 25.0% |
| ! | TCAATATGATATTCTTGCAT+AGG | + | chr4_2:58713052-58713071 | Msa0610820:intron | 25.0% |
| !! | ATGTATATGAGTTGAATTTG+TGG | + | chr4_2:58713228-58713247 | Msa0610820:intron | 25.0% |
| TAGTCCTTGAAGAATTGTAT+AGG | + | chr4_2:58712525-58712544 | Msa0610820:CDS | 30.0% | |
| TTGAAGAATTGTATAGGCAA+GGG | + | chr4_2:58712531-58712550 | Msa0610820:CDS | 30.0% | |
| ! | GTTATTCAAGGTTCTTTTAG+TGG | + | chr4_2:58712809-58712828 | Msa0610820:intron | 30.0% |
| ACACACACTTCAAATTGTAA+GGG | - | chr4_2:58713198-58713217 | None:intergenic | 30.0% | |
| AGTTAAAGAGACAAAGAAGT+GGG | + | chr4_2:58713281-58713300 | Msa0610820:CDS | 30.0% | |
| TAGTCCTTGAAGAATTGTAT+AGG | + | chr4_2:58712525-58712544 | Msa0610820:CDS | 30.0% | |
| TTGAAGAATTGTATAGGCAA+GGG | + | chr4_2:58712531-58712550 | Msa0610820:CDS | 30.0% | |
| ! | GTTATTCAAGGTTCTTTTAG+TGG | + | chr4_2:58712809-58712828 | Msa0610820:intron | 30.0% |
| ACACACACTTCAAATTGTAA+GGG | - | chr4_2:58713198-58713217 | None:intergenic | 30.0% | |
| AGTTAAAGAGACAAAGAAGT+GGG | + | chr4_2:58713281-58713300 | Msa0610820:CDS | 30.0% | |
| ACTAGTAATTGAACTGGTGT+TGG | - | chr4_2:58712509-58712528 | None:intergenic | 35.0% | |
| ! | TCAAGGACTAGTAATTGAAC+TGG | - | chr4_2:58712515-58712534 | None:intergenic | 35.0% |
| CTTGCCTATACAATTCTTCA+AGG | - | chr4_2:58712532-58712551 | None:intergenic | 35.0% | |
| CTTGAAGAATTGTATAGGCA+AGG | + | chr4_2:58712530-58712549 | Msa0610820:CDS | 35.0% | |
| CGACAATTTGGAAAGATTGA+AGG | + | chr4_2:58712602-58712621 | Msa0610820:CDS | 35.0% | |
| ! | AGAGAAAGAGAAGTACGTTA+TGG | + | chr4_2:58712733-58712752 | Msa0610820:CDS | 35.0% |
| ! | GAGAAAGAGAAGTACGTTAT+GGG | + | chr4_2:58712734-58712753 | Msa0610820:CDS | 35.0% |
| ! | CATAGCTTTTGTAAGGATCT+CGG | + | chr4_2:58712908-58712927 | Msa0610820:intron | 35.0% |
| CACACACACTTCAAATTGTA+AGG | - | chr4_2:58713199-58713218 | None:intergenic | 35.0% | |
| ! | TGAGTTGAATTTGTGGTGAT+TGG | + | chr4_2:58713235-58713254 | Msa0610820:intron | 35.0% |
| !! | GATTGGATTTTGAAAGAGAC+AGG | + | chr4_2:58713252-58713271 | Msa0610820:intron | 35.0% |
| GAGTTAAAGAGACAAAGAAG+TGG | + | chr4_2:58713280-58713299 | Msa0610820:CDS | 35.0% | |
| ACTAGTAATTGAACTGGTGT+TGG | - | chr4_2:58712509-58712528 | None:intergenic | 35.0% | |
| ! | TCAAGGACTAGTAATTGAAC+TGG | - | chr4_2:58712515-58712534 | None:intergenic | 35.0% |
| CTTGCCTATACAATTCTTCA+AGG | - | chr4_2:58712532-58712551 | None:intergenic | 35.0% | |
| CTTGAAGAATTGTATAGGCA+AGG | + | chr4_2:58712530-58712549 | Msa0610820:CDS | 35.0% | |
| CGACAATTTGGAAAGATTGA+AGG | + | chr4_2:58712602-58712621 | Msa0610820:CDS | 35.0% | |
| ! | AGAGAAAGAGAAGTACGTTA+TGG | + | chr4_2:58712733-58712752 | Msa0610820:CDS | 35.0% |
| ! | GAGAAAGAGAAGTACGTTAT+GGG | + | chr4_2:58712734-58712753 | Msa0610820:CDS | 35.0% |
| ! | CATAGCTTTTGTAAGGATCT+CGG | + | chr4_2:58712908-58712927 | Msa0610820:intron | 35.0% |
| CACACACACTTCAAATTGTA+AGG | - | chr4_2:58713199-58713218 | None:intergenic | 35.0% | |
| ! | TGAGTTGAATTTGTGGTGAT+TGG | + | chr4_2:58713235-58713254 | Msa0610820:intron | 35.0% |
| !! | GATTGGATTTTGAAAGAGAC+AGG | + | chr4_2:58713252-58713271 | Msa0610820:intron | 35.0% |
| GAGTTAAAGAGACAAAGAAG+TGG | + | chr4_2:58713280-58713299 | Msa0610820:CDS | 35.0% | |
| ! | TGTTGGATTTGTTCAGCTGA+TGG | - | chr4_2:58712566-58712585 | None:intergenic | 40.0% |
| !! | CTATTGGTTCCAGAATCACA+AGG | + | chr4_2:58712637-58712656 | Msa0610820:CDS | 40.0% |
| CAATTGTTTCCTCCATCTCA+AGG | - | chr4_2:58712688-58712707 | None:intergenic | 40.0% | |
| CTTGAGATGGAGGAAACAAT+TGG | + | chr4_2:58712686-58712705 | Msa0610820:CDS | 40.0% | |
| !! | TGGATTTTGAAAGAGACAGG+TGG | + | chr4_2:58713255-58713274 | Msa0610820:intron | 40.0% |
| !! | ATTTTGAAAGAGACAGGTGG+TGG | + | chr4_2:58713258-58713277 | Msa0610820:intron | 40.0% |
| TTGTTCACTGCAGTTTGAAG+TGG | - | chr4_2:58713310-58713329 | None:intergenic | 40.0% | |
| ! | TGTTGGATTTGTTCAGCTGA+TGG | - | chr4_2:58712566-58712585 | None:intergenic | 40.0% |
| !! | CTATTGGTTCCAGAATCACA+AGG | + | chr4_2:58712637-58712656 | Msa0610820:CDS | 40.0% |
| CAATTGTTTCCTCCATCTCA+AGG | - | chr4_2:58712688-58712707 | None:intergenic | 40.0% | |
| CTTGAGATGGAGGAAACAAT+TGG | + | chr4_2:58712686-58712705 | Msa0610820:CDS | 40.0% | |
| !! | TGGATTTTGAAAGAGACAGG+TGG | + | chr4_2:58713255-58713274 | Msa0610820:intron | 40.0% |
| !! | ATTTTGAAAGAGACAGGTGG+TGG | + | chr4_2:58713258-58713277 | Msa0610820:intron | 40.0% |
| TTGTTCACTGCAGTTTGAAG+TGG | - | chr4_2:58713310-58713329 | None:intergenic | 40.0% | |
| TGCATCCTCAACCAAGTTCA+AGG | + | chr4_2:58712477-58712496 | Msa0610820:CDS | 45.0% | |
| ATCCTCAACCAAGTTCAAGG+TGG | + | chr4_2:58712480-58712499 | Msa0610820:CDS | 45.0% | |
| GAAGCTGCGAAGCTATTTGT+TGG | - | chr4_2:58712583-58712602 | None:intergenic | 45.0% | |
| TCAGAAAAGCAAGAAGCTGC+AGG | + | chr4_2:58712761-58712780 | Msa0610820:CDS | 45.0% | |
| AAACTGCAGTGAACAAGCAG+AGG | + | chr4_2:58713314-58713333 | Msa0610820:CDS | 45.0% | |
| TGCATCCTCAACCAAGTTCA+AGG | + | chr4_2:58712477-58712496 | Msa0610820:CDS | 45.0% | |
| ATCCTCAACCAAGTTCAAGG+TGG | + | chr4_2:58712480-58712499 | Msa0610820:CDS | 45.0% | |
| GAAGCTGCGAAGCTATTTGT+TGG | - | chr4_2:58712583-58712602 | None:intergenic | 45.0% | |
| TCAGAAAAGCAAGAAGCTGC+AGG | + | chr4_2:58712761-58712780 | Msa0610820:CDS | 45.0% | |
| AAACTGCAGTGAACAAGCAG+AGG | + | chr4_2:58713314-58713333 | Msa0610820:CDS | 45.0% | |
| CTCCACCTTGAACTTGGTTG+AGG | - | chr4_2:58712485-58712504 | None:intergenic | 50.0% | |
| GTTGGACTCCACCTTGAACT+TGG | - | chr4_2:58712491-58712510 | None:intergenic | 50.0% | |
| GCTTCGCAGCTTCGACAATT+TGG | + | chr4_2:58712590-58712609 | Msa0610820:CDS | 50.0% | |
| CTCCACCTTGAACTTGGTTG+AGG | - | chr4_2:58712485-58712504 | None:intergenic | 50.0% | |
| GTTGGACTCCACCTTGAACT+TGG | - | chr4_2:58712491-58712510 | None:intergenic | 50.0% | |
| GCTTCGCAGCTTCGACAATT+TGG | + | chr4_2:58712590-58712609 | Msa0610820:CDS | 50.0% | |
| ACAGCTCATGCAGCTGAGCA+AGG | + | chr4_2:58712440-58712459 | Msa0610820:CDS | 55.0% | |
| GCTCTCTCGCCTTGTGATTC+TGG | - | chr4_2:58712649-58712668 | None:intergenic | 55.0% | |
| ACAGCTCATGCAGCTGAGCA+AGG | + | chr4_2:58712440-58712459 | Msa0610820:CDS | 55.0% | |
| GCTCTCTCGCCTTGTGATTC+TGG | - | chr4_2:58712649-58712668 | None:intergenic | 55.0% | |
| !! | GAAGCGTCGTCGCCTTGAGA+TGG | + | chr4_2:58712673-58712692 | Msa0610820:CDS | 60.0% |
| !! | GAAGCGTCGTCGCCTTGAGA+TGG | + | chr4_2:58712673-58712692 | Msa0610820:CDS | 60.0% |
| GCGTCGTCGCCTTGAGATGG+AGG | + | chr4_2:58712676-58712695 | Msa0610820:CDS | 65.0% | |
| GCGTCGTCGCCTTGAGATGG+AGG | + | chr4_2:58712676-58712695 | Msa0610820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 58712383 | 58713362 | 58712383 | ID=Msa0610820;Name=Msa0610820 |
| chr4_2 | mRNA | 58712383 | 58713362 | 58712383 | ID=Msa0610820-mRNA-1;Parent=Msa0610820;Name=Msa0610820-mRNA-1;_AED=0.16;_eAED=0.19;_QI=0|0|0|1|1|1|2|0|164 |
| chr4_2 | exon | 58712383 | 58712782 | 58712383 | ID=Msa0610820-mRNA-1:exon:15481;Parent=Msa0610820-mRNA-1 |
| chr4_2 | exon | 58713268 | 58713362 | 58713268 | ID=Msa0610820-mRNA-1:exon:15482;Parent=Msa0610820-mRNA-1 |
| chr4_2 | CDS | 58712383 | 58712782 | 58712383 | ID=Msa0610820-mRNA-1:cds;Parent=Msa0610820-mRNA-1 |
| chr4_2 | CDS | 58713268 | 58713362 | 58713268 | ID=Msa0610820-mRNA-1:cds;Parent=Msa0610820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
