Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611000 | KEH26852.1 | 71.429 | 77 | 22 | 0 | 164 | 240 | 72 | 148 | 1.89e-27 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0611000 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611000 | MtrunA17_Chr5g0430431 | 30.522 | 249 | 155 | 5 | 1 | 239 | 20 | 260 | 7.76e-25 | 99.0 |
| Msa0611000 | MtrunA17_Chr6g0459981 | 31.915 | 141 | 81 | 5 | 109 | 238 | 24 | 160 | 8.39e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACAAGCAAGGATTTATT+AGG | 0.154576 | 4_2:-58996836 | Msa0611000:CDS |
| TCCACATTGTTGGCAACTTC+TGG | 0.229172 | 4_2:+58996639 | None:intergenic |
| GCTATGGCTCGGTCTGTTTA+TGG | 0.249815 | 4_2:-58996456 | Msa0611000:CDS |
| GCCTTAATTGCTGGAATGTT+TGG | 0.273115 | 4_2:-58996744 | Msa0611000:CDS |
| GCCAAACATTCCAGCAATTA+AGG | 0.275848 | 4_2:+58996743 | None:intergenic |
| GATTGTTATCCGTCTTGATA+TGG | 0.282981 | 4_2:-58996796 | Msa0611000:CDS |
| CTTCTTGCTCACCTTCATCT+TGG | 0.309395 | 4_2:+58996517 | None:intergenic |
| GTAGAGTGTCTTGATTTCTT+AGG | 0.326477 | 4_2:+58996862 | None:intergenic |
| TAACAAGCAAGGATTTATTA+GGG | 0.339019 | 4_2:-58996835 | Msa0611000:CDS |
| CCCTCCTACAACATTGTTTG+TGG | 0.377527 | 4_2:-58995802 | Msa0611000:CDS |
| TACAACATTGTTTGTGGATG+TGG | 0.400608 | 4_2:-58995796 | Msa0611000:CDS |
| TAAGCTTGTCACCCTCTTGT+AGG | 0.407804 | 4_2:+58995841 | None:intergenic |
| TAATATCAATGACTTCTTGA+TGG | 0.414621 | 4_2:+58996553 | None:intergenic |
| GTGGATGATCTTGGTTGATC+TGG | 0.419207 | 4_2:-58995964 | Msa0611000:CDS |
| GCAATTTGTTTATGCTGCTA+TGG | 0.422776 | 4_2:-58996472 | Msa0611000:CDS |
| AAGAATGGTGCCTTAATTGC+TGG | 0.423495 | 4_2:-58996753 | Msa0611000:CDS |
| TTGCACTAACTCCACATTGT+TGG | 0.434351 | 4_2:+58996629 | None:intergenic |
| AACAAATTGCTCAAAGCGAT+GGG | 0.450390 | 4_2:+58996485 | None:intergenic |
| TGACAAGCTTATCTTTGAGT+TGG | 0.470099 | 4_2:-58995829 | Msa0611000:CDS |
| TTGTTTATGCTGCTATGGCT+CGG | 0.482797 | 4_2:-58996467 | Msa0611000:CDS |
| ACATCCACAAACAATGTTGT+AGG | 0.488553 | 4_2:+58995798 | None:intergenic |
| CTTGCGAAATTCGAATATCT+AGG | 0.495048 | 4_2:-58996705 | Msa0611000:CDS |
| ACAGTGTTACATACCTCTGC+CGG | 0.500194 | 4_2:+58996974 | None:intergenic |
| CGTCTTGATATGGATGACTC+TGG | 0.502279 | 4_2:-58996786 | Msa0611000:CDS |
| TGGAGGTTGAGAAAGAATAT+AGG | 0.505564 | 4_2:-58995944 | Msa0611000:CDS |
| ACAACCTCCTGCGCGACTTG+TGG | 0.513014 | 4_2:+58996591 | None:intergenic |
| AATATCAATGACTTCTTGAT+GGG | 0.513294 | 4_2:+58996554 | None:intergenic |
| GGTAACAATGAACATGTTCA+AGG | 0.514845 | 4_2:+58996680 | None:intergenic |
| AAACAAATTGCTCAAAGCGA+TGG | 0.528748 | 4_2:+58996484 | None:intergenic |
| GCTAAGAAAGTGGATGATCT+TGG | 0.529305 | 4_2:-58995973 | Msa0611000:CDS |
| TCCGTTCAGCCGTGTTTAGA+CGG | 0.534125 | 4_2:+58995919 | None:intergenic |
| ATTAGGGATCACGATGGCAG+AGG | 0.543948 | 4_2:-58996819 | Msa0611000:CDS |
| TTAGGGATCACGATGGCAGA+GGG | 0.544981 | 4_2:-58996818 | Msa0611000:CDS |
| TCTGGATTAGCATCAGCCAT+GGG | 0.547568 | 4_2:+58996657 | None:intergenic |
| TATTGACTGTGCTAAGAAAG+TGG | 0.549326 | 4_2:-58995983 | Msa0611000:CDS |
| TTTCGTAAGCATGGTGAACC+CGG | 0.556913 | 4_2:-58996993 | None:intergenic |
| TTCTTAGGAGAAAGTACCTG+TGG | 0.560267 | 4_2:-58996898 | Msa0611000:intron |
| TTCTGGATTAGCATCAGCCA+TGG | 0.566437 | 4_2:+58996656 | None:intergenic |
| TCTGGAATTTCAATGAAGAA+TGG | 0.568291 | 4_2:-58996768 | Msa0611000:CDS |
| AAACACGGCTGAACGGAACA+AGG | 0.570782 | 4_2:-58995913 | Msa0611000:CDS |
| TCAGATGAAGACCAAGATGA+AGG | 0.574883 | 4_2:-58996528 | Msa0611000:CDS |
| TTTATGGACAACCAATGGTA+AGG | 0.576804 | 4_2:-58996440 | Msa0611000:intron |
| TCCACAAACAATGTTGTAGG+AGG | 0.578109 | 4_2:+58995801 | None:intergenic |
| AAGCATGGTGAACCCGGCAG+AGG | 0.586095 | 4_2:-58996987 | None:intergenic |
| TGAAAATCCACAAGTCGCGC+AGG | 0.590768 | 4_2:-58996598 | Msa0611000:CDS |
| GCCGTCTAAACACGGCTGAA+CGG | 0.592455 | 4_2:-58995920 | Msa0611000:CDS |
| GATGATCTTGGTTGATCTGG+AGG | 0.594823 | 4_2:-58995961 | Msa0611000:CDS |
| AGATGAAGGTGAGCAAGAAG+AGG | 0.595301 | 4_2:-58996514 | Msa0611000:CDS |
| TATTCGAATTTCGCAAGAGT+AGG | 0.596636 | 4_2:+58996711 | None:intergenic |
| CAGTGTTACATACCTCTGCC+GGG | 0.597890 | 4_2:+58996975 | None:intergenic |
| ACTCTACAAATTAACAAGCA+AGG | 0.598382 | 4_2:-58996846 | Msa0611000:CDS |
| AGGTAGAATTGAAAATCCAC+AGG | 0.601572 | 4_2:+58996882 | None:intergenic |
| GTCTGTTTATGGACAACCAA+TGG | 0.604681 | 4_2:-58996445 | Msa0611000:CDS |
| TGTCACCCTCTTGTAGGCGA+CGG | 0.606670 | 4_2:+58995847 | None:intergenic |
| CAAATTGCTCAAAGCGATGG+GGG | 0.606738 | 4_2:+58996487 | None:intergenic |
| CAAAGACCGTCGCCTACAAG+AGG | 0.619952 | 4_2:-58995853 | Msa0611000:CDS |
| GTAACAATGAACATGTTCAA+GGG | 0.625828 | 4_2:+58996681 | None:intergenic |
| AAATCCACAAGTCGCGCAGG+AGG | 0.634892 | 4_2:-58996595 | Msa0611000:CDS |
| TGTTTGTGGATGTGGTGCGT+AGG | 0.638563 | 4_2:-58995788 | Msa0611000:CDS |
| ATATAGGTGCCGTCTAAACA+CGG | 0.646119 | 4_2:-58995928 | Msa0611000:CDS |
| CAGAGTCATCCATATCAAGA+CGG | 0.651142 | 4_2:+58996787 | None:intergenic |
| ACAAATTGCTCAAAGCGATG+GGG | 0.652309 | 4_2:+58996486 | None:intergenic |
| CTGGATTAGCATCAGCCATG+GGG | 0.653003 | 4_2:+58996658 | None:intergenic |
| CCACAAACAATGTTGTAGGA+GGG | 0.653871 | 4_2:+58995802 | None:intergenic |
| TCCAGAAGTTGCCAACAATG+TGG | 0.656828 | 4_2:-58996640 | Msa0611000:CDS |
| AAAGACCGTCGCCTACAAGA+GGG | 0.680199 | 4_2:-58995852 | Msa0611000:CDS |
| AACACGGCTGAACGGAACAA+GGG | 0.683539 | 4_2:-58995912 | Msa0611000:CDS |
| TGGATTAGCATCAGCCATGG+GGG | 0.691846 | 4_2:+58996659 | None:intergenic |
| GGATTTATTAGGGATCACGA+TGG | 0.729747 | 4_2:-58996825 | Msa0611000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATAAATATTATTGATA+AGG | + | chr4_2:58996361-58996380 | None:intergenic | 10.0% |
| !! | TAATATTTATTTCAAAAATG+AGG | - | chr4_2:58996367-58996386 | Msa0611000:intron | 10.0% |
| !! | TGAAATAAATATTATTGATA+AGG | + | chr4_2:58996361-58996380 | None:intergenic | 10.0% |
| !! | TAATATTTATTTCAAAAATG+AGG | - | chr4_2:58996367-58996386 | Msa0611000:intron | 10.0% |
| !! | AATATAACTTTGATATAATG+TGG | - | chr4_2:58996539-58996558 | Msa0611000:CDS | 15.0% |
| !!! | TTTTTATGTGCAATATAATA+AGG | - | chr4_2:58996700-58996719 | Msa0611000:CDS | 15.0% |
| !! | AATATAACTTTGATATAATG+TGG | - | chr4_2:58996539-58996558 | Msa0611000:CDS | 15.0% |
| !!! | TTTTTATGTGCAATATAATA+AGG | - | chr4_2:58996700-58996719 | Msa0611000:CDS | 15.0% |
| !! | CTAAGAACAACAAATATAAA+TGG | + | chr4_2:58995845-58995864 | None:intergenic | 20.0% |
| !!! | CATTTATATTTGTTGTTCTT+AGG | - | chr4_2:58995843-58995862 | Msa0611000:CDS | 20.0% |
| !! | AAATATTATTGATAAGGAGA+AGG | + | chr4_2:58996355-58996374 | None:intergenic | 20.0% |
| !! | CAATATTTATTAGATCAAAC+TGG | + | chr4_2:58996512-58996531 | None:intergenic | 20.0% |
| !! | AAAATGCTATACAAAAGATA+TGG | + | chr4_2:58996731-58996750 | None:intergenic | 20.0% |
| !! | CTAAGAACAACAAATATAAA+TGG | + | chr4_2:58995845-58995864 | None:intergenic | 20.0% |
| !!! | CATTTATATTTGTTGTTCTT+AGG | - | chr4_2:58995843-58995862 | Msa0611000:CDS | 20.0% |
| !! | AAATATTATTGATAAGGAGA+AGG | + | chr4_2:58996355-58996374 | None:intergenic | 20.0% |
| !! | CAATATTTATTAGATCAAAC+TGG | + | chr4_2:58996512-58996531 | None:intergenic | 20.0% |
| !! | AAAATGCTATACAAAAGATA+TGG | + | chr4_2:58996731-58996750 | None:intergenic | 20.0% |
| ! | TTAACAAGCAAGGATTTATT+AGG | - | chr4_2:58995920-58995939 | Msa0611000:CDS | 25.0% |
| ! | TAACAAGCAAGGATTTATTA+GGG | - | chr4_2:58995921-58995940 | Msa0611000:CDS | 25.0% |
| ! | AATATCAATGACTTCTTGAT+GGG | + | chr4_2:58996205-58996224 | None:intergenic | 25.0% |
| ! | TAATATCAATGACTTCTTGA+TGG | + | chr4_2:58996206-58996225 | None:intergenic | 25.0% |
| !!! | TTTTTAGTATACCTTACCAT+TGG | + | chr4_2:58996330-58996349 | None:intergenic | 25.0% |
| ! | ATAAAACATAAGGTGGAATT+TGG | + | chr4_2:58996430-58996449 | None:intergenic | 25.0% |
| !!! | TTTTTCAAAGTATCTTGAGT+TGG | - | chr4_2:58996579-58996598 | Msa0611000:CDS | 25.0% |
| ! | TTAACAAGCAAGGATTTATT+AGG | - | chr4_2:58995920-58995939 | Msa0611000:CDS | 25.0% |
| ! | TAACAAGCAAGGATTTATTA+GGG | - | chr4_2:58995921-58995940 | Msa0611000:CDS | 25.0% |
| ! | AATATCAATGACTTCTTGAT+GGG | + | chr4_2:58996205-58996224 | None:intergenic | 25.0% |
| ! | TAATATCAATGACTTCTTGA+TGG | + | chr4_2:58996206-58996225 | None:intergenic | 25.0% |
| !!! | TTTTTAGTATACCTTACCAT+TGG | + | chr4_2:58996330-58996349 | None:intergenic | 25.0% |
| ! | ATAAAACATAAGGTGGAATT+TGG | + | chr4_2:58996430-58996449 | None:intergenic | 25.0% |
| !!! | TTTTTCAAAGTATCTTGAGT+TGG | - | chr4_2:58996579-58996598 | Msa0611000:CDS | 25.0% |
| ACTCTACAAATTAACAAGCA+AGG | - | chr4_2:58995910-58995929 | Msa0611000:CDS | 30.0% | |
| ! | TCTGGAATTTCAATGAAGAA+TGG | - | chr4_2:58995988-58996007 | Msa0611000:CDS | 30.0% |
| GTAACAATGAACATGTTCAA+GGG | + | chr4_2:58996078-58996097 | None:intergenic | 30.0% | |
| AACAAGGGTGAAAAATCATT+GGG | - | chr4_2:58996859-58996878 | Msa0611000:CDS | 30.0% | |
| ACTCTACAAATTAACAAGCA+AGG | - | chr4_2:58995910-58995929 | Msa0611000:CDS | 30.0% | |
| ! | TCTGGAATTTCAATGAAGAA+TGG | - | chr4_2:58995988-58996007 | Msa0611000:CDS | 30.0% |
| GTAACAATGAACATGTTCAA+GGG | + | chr4_2:58996078-58996097 | None:intergenic | 30.0% | |
| AACAAGGGTGAAAAATCATT+GGG | - | chr4_2:58996859-58996878 | Msa0611000:CDS | 30.0% | |
| AGGTAGAATTGAAAATCCAC+AGG | + | chr4_2:58995877-58995896 | None:intergenic | 35.0% | |
| ! | GTAGAGTGTCTTGATTTCTT+AGG | + | chr4_2:58995897-58995916 | None:intergenic | 35.0% |
| GATTGTTATCCGTCTTGATA+TGG | - | chr4_2:58995960-58995979 | Msa0611000:CDS | 35.0% | |
| TATTCGAATTTCGCAAGAGT+AGG | + | chr4_2:58996048-58996067 | None:intergenic | 35.0% | |
| CTTGCGAAATTCGAATATCT+AGG | - | chr4_2:58996051-58996070 | Msa0611000:intron | 35.0% | |
| GGTAACAATGAACATGTTCA+AGG | + | chr4_2:58996079-58996098 | None:intergenic | 35.0% | |
| AACAAATTGCTCAAAGCGAT+GGG | + | chr4_2:58996274-58996293 | None:intergenic | 35.0% | |
| AAACAAATTGCTCAAAGCGA+TGG | + | chr4_2:58996275-58996294 | None:intergenic | 35.0% | |
| ! | GCAATTTGTTTATGCTGCTA+TGG | - | chr4_2:58996284-58996303 | Msa0611000:intron | 35.0% |
| TTTATGGACAACCAATGGTA+AGG | - | chr4_2:58996316-58996335 | Msa0611000:intron | 35.0% | |
| TTCCATGCGCATAAAACATA+AGG | + | chr4_2:58996440-58996459 | None:intergenic | 35.0% | |
| ! | ATCTCTCTAGAAACACGATT+GGG | + | chr4_2:58996754-58996773 | None:intergenic | 35.0% |
| ! | TATCTCTCTAGAAACACGAT+TGG | + | chr4_2:58996755-58996774 | None:intergenic | 35.0% |
| ! | TATTGACTGTGCTAAGAAAG+TGG | - | chr4_2:58996773-58996792 | Msa0611000:CDS | 35.0% |
| TGGAGGTTGAGAAAGAATAT+AGG | - | chr4_2:58996812-58996831 | Msa0611000:CDS | 35.0% | |
| GAACAAGGGTGAAAAATCAT+TGG | - | chr4_2:58996858-58996877 | Msa0611000:CDS | 35.0% | |
| AAAAATCATTGGGAAGAGGA+TGG | - | chr4_2:58996869-58996888 | Msa0611000:CDS | 35.0% | |
| TGACAAGCTTATCTTTGAGT+TGG | - | chr4_2:58996927-58996946 | Msa0611000:intron | 35.0% | |
| ACATCCACAAACAATGTTGT+AGG | + | chr4_2:58996961-58996980 | None:intergenic | 35.0% | |
| TACAACATTGTTTGTGGATG+TGG | - | chr4_2:58996960-58996979 | Msa0611000:intron | 35.0% | |
| AGGTAGAATTGAAAATCCAC+AGG | + | chr4_2:58995877-58995896 | None:intergenic | 35.0% | |
| ! | GTAGAGTGTCTTGATTTCTT+AGG | + | chr4_2:58995897-58995916 | None:intergenic | 35.0% |
| GATTGTTATCCGTCTTGATA+TGG | - | chr4_2:58995960-58995979 | Msa0611000:CDS | 35.0% | |
| TATTCGAATTTCGCAAGAGT+AGG | + | chr4_2:58996048-58996067 | None:intergenic | 35.0% | |
| CTTGCGAAATTCGAATATCT+AGG | - | chr4_2:58996051-58996070 | Msa0611000:intron | 35.0% | |
| GGTAACAATGAACATGTTCA+AGG | + | chr4_2:58996079-58996098 | None:intergenic | 35.0% | |
| AACAAATTGCTCAAAGCGAT+GGG | + | chr4_2:58996274-58996293 | None:intergenic | 35.0% | |
| AAACAAATTGCTCAAAGCGA+TGG | + | chr4_2:58996275-58996294 | None:intergenic | 35.0% | |
| ! | GCAATTTGTTTATGCTGCTA+TGG | - | chr4_2:58996284-58996303 | Msa0611000:intron | 35.0% |
| TTTATGGACAACCAATGGTA+AGG | - | chr4_2:58996316-58996335 | Msa0611000:intron | 35.0% | |
| TTCCATGCGCATAAAACATA+AGG | + | chr4_2:58996440-58996459 | None:intergenic | 35.0% | |
| ! | ATCTCTCTAGAAACACGATT+GGG | + | chr4_2:58996754-58996773 | None:intergenic | 35.0% |
| ! | TATCTCTCTAGAAACACGAT+TGG | + | chr4_2:58996755-58996774 | None:intergenic | 35.0% |
| ! | TATTGACTGTGCTAAGAAAG+TGG | - | chr4_2:58996773-58996792 | Msa0611000:CDS | 35.0% |
| TGGAGGTTGAGAAAGAATAT+AGG | - | chr4_2:58996812-58996831 | Msa0611000:CDS | 35.0% | |
| GAACAAGGGTGAAAAATCAT+TGG | - | chr4_2:58996858-58996877 | Msa0611000:CDS | 35.0% | |
| AAAAATCATTGGGAAGAGGA+TGG | - | chr4_2:58996869-58996888 | Msa0611000:CDS | 35.0% | |
| TGACAAGCTTATCTTTGAGT+TGG | - | chr4_2:58996927-58996946 | Msa0611000:intron | 35.0% | |
| ACATCCACAAACAATGTTGT+AGG | + | chr4_2:58996961-58996980 | None:intergenic | 35.0% | |
| TACAACATTGTTTGTGGATG+TGG | - | chr4_2:58996960-58996979 | Msa0611000:intron | 35.0% | |
| !! | TTCTTAGGAGAAAGTACCTG+TGG | - | chr4_2:58995858-58995877 | Msa0611000:CDS | 40.0% |
| GGATTTATTAGGGATCACGA+TGG | - | chr4_2:58995931-58995950 | Msa0611000:CDS | 40.0% | |
| CAGAGTCATCCATATCAAGA+CGG | + | chr4_2:58995972-58995991 | None:intergenic | 40.0% | |
| AAGAATGGTGCCTTAATTGC+TGG | - | chr4_2:58996003-58996022 | Msa0611000:intron | 40.0% | |
| GCCTTAATTGCTGGAATGTT+TGG | - | chr4_2:58996012-58996031 | Msa0611000:intron | 40.0% | |
| GCCAAACATTCCAGCAATTA+AGG | + | chr4_2:58996016-58996035 | None:intergenic | 40.0% | |
| TTGCACTAACTCCACATTGT+TGG | + | chr4_2:58996130-58996149 | None:intergenic | 40.0% | |
| TCAGATGAAGACCAAGATGA+AGG | - | chr4_2:58996228-58996247 | Msa0611000:intron | 40.0% | |
| ACAAATTGCTCAAAGCGATG+GGG | + | chr4_2:58996273-58996292 | None:intergenic | 40.0% | |
| TTGTTTATGCTGCTATGGCT+CGG | - | chr4_2:58996289-58996308 | Msa0611000:intron | 40.0% | |
| GTCTGTTTATGGACAACCAA+TGG | - | chr4_2:58996311-58996330 | Msa0611000:intron | 40.0% | |
| CATGCGCATAAAACATAAGG+TGG | + | chr4_2:58996437-58996456 | None:intergenic | 40.0% | |
| ! | CACCTTATGTTTTATGCGCA+TGG | - | chr4_2:58996435-58996454 | Msa0611000:intron | 40.0% |
| GCTAAGAAAGTGGATGATCT+TGG | - | chr4_2:58996783-58996802 | Msa0611000:CDS | 40.0% | |
| ! | ATATAGGTGCCGTCTAAACA+CGG | - | chr4_2:58996828-58996847 | Msa0611000:CDS | 40.0% |
| GGTGAAAAATCATTGGGAAG+AGG | - | chr4_2:58996865-58996884 | Msa0611000:CDS | 40.0% | |
| CCACAAACAATGTTGTAGGA+GGG | + | chr4_2:58996957-58996976 | None:intergenic | 40.0% | |
| TCCACAAACAATGTTGTAGG+AGG | + | chr4_2:58996958-58996977 | None:intergenic | 40.0% | |
| !! | TTCTTAGGAGAAAGTACCTG+TGG | - | chr4_2:58995858-58995877 | Msa0611000:CDS | 40.0% |
| GGATTTATTAGGGATCACGA+TGG | - | chr4_2:58995931-58995950 | Msa0611000:CDS | 40.0% | |
| CAGAGTCATCCATATCAAGA+CGG | + | chr4_2:58995972-58995991 | None:intergenic | 40.0% | |
| AAGAATGGTGCCTTAATTGC+TGG | - | chr4_2:58996003-58996022 | Msa0611000:intron | 40.0% | |
| GCCTTAATTGCTGGAATGTT+TGG | - | chr4_2:58996012-58996031 | Msa0611000:intron | 40.0% | |
| GCCAAACATTCCAGCAATTA+AGG | + | chr4_2:58996016-58996035 | None:intergenic | 40.0% | |
| TTGCACTAACTCCACATTGT+TGG | + | chr4_2:58996130-58996149 | None:intergenic | 40.0% | |
| TCAGATGAAGACCAAGATGA+AGG | - | chr4_2:58996228-58996247 | Msa0611000:intron | 40.0% | |
| ACAAATTGCTCAAAGCGATG+GGG | + | chr4_2:58996273-58996292 | None:intergenic | 40.0% | |
| TTGTTTATGCTGCTATGGCT+CGG | - | chr4_2:58996289-58996308 | Msa0611000:intron | 40.0% | |
| GTCTGTTTATGGACAACCAA+TGG | - | chr4_2:58996311-58996330 | Msa0611000:intron | 40.0% | |
| CATGCGCATAAAACATAAGG+TGG | + | chr4_2:58996437-58996456 | None:intergenic | 40.0% | |
| ! | CACCTTATGTTTTATGCGCA+TGG | - | chr4_2:58996435-58996454 | Msa0611000:intron | 40.0% |
| GCTAAGAAAGTGGATGATCT+TGG | - | chr4_2:58996783-58996802 | Msa0611000:CDS | 40.0% | |
| ! | ATATAGGTGCCGTCTAAACA+CGG | - | chr4_2:58996828-58996847 | Msa0611000:CDS | 40.0% |
| GGTGAAAAATCATTGGGAAG+AGG | - | chr4_2:58996865-58996884 | Msa0611000:CDS | 40.0% | |
| CCACAAACAATGTTGTAGGA+GGG | + | chr4_2:58996957-58996976 | None:intergenic | 40.0% | |
| TCCACAAACAATGTTGTAGG+AGG | + | chr4_2:58996958-58996977 | None:intergenic | 40.0% | |
| ACAGTGTTACATACCTCTGC+CGG | + | chr4_2:58995785-58995804 | None:intergenic | 45.0% | |
| CGTCTTGATATGGATGACTC+TGG | - | chr4_2:58995970-58995989 | Msa0611000:CDS | 45.0% | |
| CATGTTCATTGTTACCCCCA+TGG | - | chr4_2:58996083-58996102 | Msa0611000:intron | 45.0% | |
| !! | TCTGGATTAGCATCAGCCAT+GGG | + | chr4_2:58996102-58996121 | None:intergenic | 45.0% |
| !! | TTCTGGATTAGCATCAGCCA+TGG | + | chr4_2:58996103-58996122 | None:intergenic | 45.0% |
| TCCAGAAGTTGCCAACAATG+TGG | - | chr4_2:58996116-58996135 | Msa0611000:intron | 45.0% | |
| TCCACATTGTTGGCAACTTC+TGG | + | chr4_2:58996120-58996139 | None:intergenic | 45.0% | |
| CTTCTTGCTCACCTTCATCT+TGG | + | chr4_2:58996242-58996261 | None:intergenic | 45.0% | |
| AGATGAAGGTGAGCAAGAAG+AGG | - | chr4_2:58996242-58996261 | Msa0611000:intron | 45.0% | |
| CAAATTGCTCAAAGCGATGG+GGG | + | chr4_2:58996272-58996291 | None:intergenic | 45.0% | |
| CAGCTCACTATGTCACATCT+TGG | + | chr4_2:58996632-58996651 | None:intergenic | 45.0% | |
| GTGGATGATCTTGGTTGATC+TGG | - | chr4_2:58996792-58996811 | Msa0611000:CDS | 45.0% | |
| GATGATCTTGGTTGATCTGG+AGG | - | chr4_2:58996795-58996814 | Msa0611000:CDS | 45.0% | |
| TAAGCTTGTCACCCTCTTGT+AGG | + | chr4_2:58996918-58996937 | None:intergenic | 45.0% | |
| CCCTCCTACAACATTGTTTG+TGG | - | chr4_2:58996954-58996973 | Msa0611000:intron | 45.0% | |
| ACAGTGTTACATACCTCTGC+CGG | + | chr4_2:58995785-58995804 | None:intergenic | 45.0% | |
| CGTCTTGATATGGATGACTC+TGG | - | chr4_2:58995970-58995989 | Msa0611000:CDS | 45.0% | |
| CATGTTCATTGTTACCCCCA+TGG | - | chr4_2:58996083-58996102 | Msa0611000:intron | 45.0% | |
| !! | TCTGGATTAGCATCAGCCAT+GGG | + | chr4_2:58996102-58996121 | None:intergenic | 45.0% |
| !! | TTCTGGATTAGCATCAGCCA+TGG | + | chr4_2:58996103-58996122 | None:intergenic | 45.0% |
| TCCAGAAGTTGCCAACAATG+TGG | - | chr4_2:58996116-58996135 | Msa0611000:intron | 45.0% | |
| TCCACATTGTTGGCAACTTC+TGG | + | chr4_2:58996120-58996139 | None:intergenic | 45.0% | |
| CTTCTTGCTCACCTTCATCT+TGG | + | chr4_2:58996242-58996261 | None:intergenic | 45.0% | |
| AGATGAAGGTGAGCAAGAAG+AGG | - | chr4_2:58996242-58996261 | Msa0611000:intron | 45.0% | |
| CAAATTGCTCAAAGCGATGG+GGG | + | chr4_2:58996272-58996291 | None:intergenic | 45.0% | |
| CAGCTCACTATGTCACATCT+TGG | + | chr4_2:58996632-58996651 | None:intergenic | 45.0% | |
| GTGGATGATCTTGGTTGATC+TGG | - | chr4_2:58996792-58996811 | Msa0611000:CDS | 45.0% | |
| GATGATCTTGGTTGATCTGG+AGG | - | chr4_2:58996795-58996814 | Msa0611000:CDS | 45.0% | |
| TAAGCTTGTCACCCTCTTGT+AGG | + | chr4_2:58996918-58996937 | None:intergenic | 45.0% | |
| CCCTCCTACAACATTGTTTG+TGG | - | chr4_2:58996954-58996973 | Msa0611000:intron | 45.0% | |
| CAGTGTTACATACCTCTGCC+GGG | + | chr4_2:58995784-58995803 | None:intergenic | 50.0% | |
| ATTAGGGATCACGATGGCAG+AGG | - | chr4_2:58995937-58995956 | Msa0611000:CDS | 50.0% | |
| TTAGGGATCACGATGGCAGA+GGG | - | chr4_2:58995938-58995957 | Msa0611000:CDS | 50.0% | |
| !! | TGGATTAGCATCAGCCATGG+GGG | + | chr4_2:58996100-58996119 | None:intergenic | 50.0% |
| !! | CTGGATTAGCATCAGCCATG+GGG | + | chr4_2:58996101-58996120 | None:intergenic | 50.0% |
| TGAAAATCCACAAGTCGCGC+AGG | - | chr4_2:58996158-58996177 | Msa0611000:intron | 50.0% | |
| !! | GCTATGGCTCGGTCTGTTTA+TGG | - | chr4_2:58996300-58996319 | Msa0611000:intron | 50.0% |
| TCCGTTCAGCCGTGTTTAGA+CGG | + | chr4_2:58996840-58996859 | None:intergenic | 50.0% | |
| AAACACGGCTGAACGGAACA+AGG | - | chr4_2:58996843-58996862 | Msa0611000:CDS | 50.0% | |
| AACACGGCTGAACGGAACAA+GGG | - | chr4_2:58996844-58996863 | Msa0611000:CDS | 50.0% | |
| AAAGACCGTCGCCTACAAGA+GGG | - | chr4_2:58996904-58996923 | Msa0611000:intron | 50.0% | |
| TGTTTGTGGATGTGGTGCGT+AGG | - | chr4_2:58996968-58996987 | Msa0611000:intron | 50.0% | |
| CAGTGTTACATACCTCTGCC+GGG | + | chr4_2:58995784-58995803 | None:intergenic | 50.0% | |
| ATTAGGGATCACGATGGCAG+AGG | - | chr4_2:58995937-58995956 | Msa0611000:CDS | 50.0% | |
| TTAGGGATCACGATGGCAGA+GGG | - | chr4_2:58995938-58995957 | Msa0611000:CDS | 50.0% | |
| !! | TGGATTAGCATCAGCCATGG+GGG | + | chr4_2:58996100-58996119 | None:intergenic | 50.0% |
| !! | CTGGATTAGCATCAGCCATG+GGG | + | chr4_2:58996101-58996120 | None:intergenic | 50.0% |
| TGAAAATCCACAAGTCGCGC+AGG | - | chr4_2:58996158-58996177 | Msa0611000:intron | 50.0% | |
| !! | GCTATGGCTCGGTCTGTTTA+TGG | - | chr4_2:58996300-58996319 | Msa0611000:intron | 50.0% |
| TCCGTTCAGCCGTGTTTAGA+CGG | + | chr4_2:58996840-58996859 | None:intergenic | 50.0% | |
| AAACACGGCTGAACGGAACA+AGG | - | chr4_2:58996843-58996862 | Msa0611000:CDS | 50.0% | |
| AACACGGCTGAACGGAACAA+GGG | - | chr4_2:58996844-58996863 | Msa0611000:CDS | 50.0% | |
| AAAGACCGTCGCCTACAAGA+GGG | - | chr4_2:58996904-58996923 | Msa0611000:intron | 50.0% | |
| TGTTTGTGGATGTGGTGCGT+AGG | - | chr4_2:58996968-58996987 | Msa0611000:intron | 50.0% | |
| AAATCCACAAGTCGCGCAGG+AGG | - | chr4_2:58996161-58996180 | Msa0611000:intron | 55.0% | |
| GCCGTCTAAACACGGCTGAA+CGG | - | chr4_2:58996836-58996855 | Msa0611000:CDS | 55.0% | |
| CAAAGACCGTCGCCTACAAG+AGG | - | chr4_2:58996903-58996922 | Msa0611000:intron | 55.0% | |
| TGTCACCCTCTTGTAGGCGA+CGG | + | chr4_2:58996912-58996931 | None:intergenic | 55.0% | |
| AAATCCACAAGTCGCGCAGG+AGG | - | chr4_2:58996161-58996180 | Msa0611000:intron | 55.0% | |
| GCCGTCTAAACACGGCTGAA+CGG | - | chr4_2:58996836-58996855 | Msa0611000:CDS | 55.0% | |
| CAAAGACCGTCGCCTACAAG+AGG | - | chr4_2:58996903-58996922 | Msa0611000:intron | 55.0% | |
| TGTCACCCTCTTGTAGGCGA+CGG | + | chr4_2:58996912-58996931 | None:intergenic | 55.0% | |
| ACAACCTCCTGCGCGACTTG+TGG | + | chr4_2:58996168-58996187 | None:intergenic | 60.0% | |
| ACAACCTCCTGCGCGACTTG+TGG | + | chr4_2:58996168-58996187 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 58995773 | 58997005 | 58995773 | ID=Msa0611000;Name=Msa0611000 |
| chr4_2 | mRNA | 58995773 | 58997005 | 58995773 | ID=Msa0611000-mRNA-1;Parent=Msa0611000;Name=Msa0611000-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.66|1|1|3|0|242 |
| chr4_2 | exon | 58996988 | 58997005 | 58996988 | ID=Msa0611000-mRNA-1:exon:15648;Parent=Msa0611000-mRNA-1 |
| chr4_2 | exon | 58996441 | 58996913 | 58996441 | ID=Msa0611000-mRNA-1:exon:15647;Parent=Msa0611000-mRNA-1 |
| chr4_2 | exon | 58995773 | 58996010 | 58995773 | ID=Msa0611000-mRNA-1:exon:15646;Parent=Msa0611000-mRNA-1 |
| chr4_2 | CDS | 58996988 | 58997005 | 58996988 | ID=Msa0611000-mRNA-1:cds;Parent=Msa0611000-mRNA-1 |
| chr4_2 | CDS | 58996441 | 58996913 | 58996441 | ID=Msa0611000-mRNA-1:cds;Parent=Msa0611000-mRNA-1 |
| chr4_2 | CDS | 58995773 | 58996010 | 58995773 | ID=Msa0611000-mRNA-1:cds;Parent=Msa0611000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
