AlfalfaGEDB | Msa0611000

M. sativa cultivar zhongmu-4 / Msa0611000

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611000	KEH26852.1	71.429	77	22	0	164	240	72	148	1.89e-27	117

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0611000	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611000	MtrunA17_Chr5g0430431	30.522	249	155	5	1	239	20	260	7.76e-25	99.0
Msa0611000	MtrunA17_Chr6g0459981	31.915	141	81	5	109	238	24	160	8.39e-11	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 69 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAATTGCTCAAAGCGA+TGG	0.528748	4_2:+58996484	None:intergenic
AAACACGGCTGAACGGAACA+AGG	0.570782	4_2:-58995913	Msa0611000:CDS
AAAGACCGTCGCCTACAAGA+GGG	0.680199	4_2:-58995852	Msa0611000:CDS
AAATCCACAAGTCGCGCAGG+AGG	0.634892	4_2:-58996595	Msa0611000:CDS
AACAAATTGCTCAAAGCGAT+GGG	0.450390	4_2:+58996485	None:intergenic
AACACGGCTGAACGGAACAA+GGG	0.683539	4_2:-58995912	Msa0611000:CDS
AAGAATGGTGCCTTAATTGC+TGG	0.423495	4_2:-58996753	Msa0611000:CDS
AAGCATGGTGAACCCGGCAG+AGG	0.586095	4_2:-58996987	None:intergenic
AATATCAATGACTTCTTGAT+GGG	0.513294	4_2:+58996554	None:intergenic
ACAAATTGCTCAAAGCGATG+GGG	0.652309	4_2:+58996486	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTCTACAAATTAACAAGCA+AGG	-	chr4_2:58995910-58995929	Msa0611000:CDS	30.0%
GTAACAATGAACATGTTCAA+GGG	+	chr4_2:58996078-58996097	None:intergenic	30.0%
AACAAGGGTGAAAAATCATT+GGG	-	chr4_2:58996859-58996878	Msa0611000:CDS	30.0%
ACTCTACAAATTAACAAGCA+AGG	-	chr4_2:58995910-58995929	Msa0611000:CDS	30.0%
GTAACAATGAACATGTTCAA+GGG	+	chr4_2:58996078-58996097	None:intergenic	30.0%
AACAAGGGTGAAAAATCATT+GGG	-	chr4_2:58996859-58996878	Msa0611000:CDS	30.0%
AGGTAGAATTGAAAATCCAC+AGG	+	chr4_2:58995877-58995896	None:intergenic	35.0%
GATTGTTATCCGTCTTGATA+TGG	-	chr4_2:58995960-58995979	Msa0611000:CDS	35.0%
TATTCGAATTTCGCAAGAGT+AGG	+	chr4_2:58996048-58996067	None:intergenic	35.0%
CTTGCGAAATTCGAATATCT+AGG	-	chr4_2:58996051-58996070	Msa0611000:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	58995773	58997005	58995773	ID=Msa0611000;Name=Msa0611000
chr4_2	mRNA	58995773	58997005	58995773	ID=Msa0611000-mRNA-1;Parent=Msa0611000;Name=Msa0611000-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|242
chr4_2	exon	58996988	58997005	58996988	ID=Msa0611000-mRNA-1:exon:15648;Parent=Msa0611000-mRNA-1
chr4_2	exon	58996441	58996913	58996441	ID=Msa0611000-mRNA-1:exon:15647;Parent=Msa0611000-mRNA-1
chr4_2	exon	58995773	58996010	58995773	ID=Msa0611000-mRNA-1:exon:15646;Parent=Msa0611000-mRNA-1
chr4_2	CDS	58996988	58997005	58996988	ID=Msa0611000-mRNA-1:cds;Parent=Msa0611000-mRNA-1
chr4_2	CDS	58996441	58996913	58996441	ID=Msa0611000-mRNA-1:cds;Parent=Msa0611000-mRNA-1
chr4_2	CDS	58995773	58996010	58995773	ID=Msa0611000-mRNA-1:cds;Parent=Msa0611000-mRNA-1

Gene Sequence

>Msa0611000

ATGGTGAACCCGGCAGAGGAGAAAGTACCTGTGGATTTTCAATTCTACCTAAGAAATCAAGACACTCTACAAATTAACAAGCAAGGATTTATTAGGGATCACGATGGCAGAGGGATTGTTATCCGTCTTGATATGGATGACTCTGGAATTTCAATGAAGAATGGTGCCTTAATTGCTGGAATGTTTGGCTTGAACATTCCTACTCTTGCGAAATTCGAATATCTAGGTCCCTTGAACATGTTCATTGTTACCCCCATGGCTGATGCTAATCCAGAAGTTGCCAACAATGTGGAGTTAGTGCAAGATGTTGTTGAAAATCCACAAGTCGCGCAGGAGGTTGTTGACATCGAAGATGCCCATCAAGAAGTCATTGATATTAGTTCAGATGAAGACCAAGATGAAGGTGAGCAAGAAGAGGAAAACCCCCATCGCTTTGAGCAATTTGTTTATGCTGCTATGGCTCGGTCTGTTTATGGACAACCAATGGTAAGAGAGATATTGACTGTGCTAAGAAAGTGGATGATCTTGGTTGATCTGGAGGTTGAGAAAGAATATAGGTGCCGTCTAAACACGGCTGAACGGAACAAGGGTGAAAAATCATTGGGAAGAGGATGGTTCAAATTTGTCAAAGACCGTCGCCTACAAGAGGGTGACAAGCTTATCTTTGAGTTGGATCGCCCTCCTACAACATTGTTTGTGGATGTGGTGCGTAGGCAGAATTTAGCTTGA

Protein sequence

>Msa0611000

MVNPAEEKVPVDFQFYLRNQDTLQINKQGFIRDHDGRGIVIRLDMDDSGISMKNGALIAGMFGLNIPTLAKFEYLGPLNMFIVTPMADANPEVANNVELVQDVVENPQVAQEVVDIEDAHQEVIDISSDEDQDEGEQEEENPHRFEQFVYAAMARSVYGQPMVREILTVLRKWMILVDLEVEKEYRCRLNTAERNKGEKSLGRGWFKFVKDRRLQEGDKLIFELDRPPTTLFVDVVRRQNLA*