Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611040 | KEH26852.1 | 71.429 | 77 | 22 | 0 | 164 | 240 | 72 | 148 | 1.89e-27 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0611040 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611040 | MtrunA17_Chr5g0430431 | 30.522 | 249 | 155 | 5 | 1 | 239 | 20 | 260 | 7.76e-25 | 99.0 |
| Msa0611040 | MtrunA17_Chr6g0459981 | 31.915 | 141 | 81 | 5 | 109 | 238 | 24 | 160 | 8.39e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACAAGCAAGGATTTATT+AGG | 0.154576 | 4_2:-59041167 | Msa0611040:CDS |
| TCCACATTGTTGGCAACTTC+TGG | 0.229172 | 4_2:+59040970 | None:intergenic |
| GCTATGGCTCGGTCTGTTTA+TGG | 0.249815 | 4_2:-59040787 | Msa0611040:CDS |
| GCCTTAATTGCTGGAATGTT+TGG | 0.273115 | 4_2:-59041075 | Msa0611040:CDS |
| GCCAAACATTCCAGCAATTA+AGG | 0.275848 | 4_2:+59041074 | None:intergenic |
| GATTGTTATCCGTCTTGATA+TGG | 0.282981 | 4_2:-59041127 | Msa0611040:CDS |
| CTTCTTGCTCACCTTCATCT+TGG | 0.309395 | 4_2:+59040848 | None:intergenic |
| GTAGAGTGTCTTGATTTCTT+AGG | 0.326477 | 4_2:+59041193 | None:intergenic |
| TAACAAGCAAGGATTTATTA+GGG | 0.339019 | 4_2:-59041166 | Msa0611040:CDS |
| CCCTCCTACAACATTGTTTG+TGG | 0.377527 | 4_2:-59040133 | Msa0611040:CDS |
| TACAACATTGTTTGTGGATG+TGG | 0.400608 | 4_2:-59040127 | Msa0611040:CDS |
| TAAGCTTGTCACCCTCTTGT+AGG | 0.407804 | 4_2:+59040172 | None:intergenic |
| TAATATCAATGACTTCTTGA+TGG | 0.414621 | 4_2:+59040884 | None:intergenic |
| GTGGATGATCTTGGTTGATC+TGG | 0.419207 | 4_2:-59040295 | Msa0611040:CDS |
| GCAATTTGTTTATGCTGCTA+TGG | 0.422776 | 4_2:-59040803 | Msa0611040:CDS |
| AAGAATGGTGCCTTAATTGC+TGG | 0.423495 | 4_2:-59041084 | Msa0611040:CDS |
| TTGCACTAACTCCACATTGT+TGG | 0.434351 | 4_2:+59040960 | None:intergenic |
| AACAAATTGCTCAAAGCGAT+GGG | 0.450390 | 4_2:+59040816 | None:intergenic |
| TGACAAGCTTATCTTTGAGT+TGG | 0.470099 | 4_2:-59040160 | Msa0611040:CDS |
| TTGTTTATGCTGCTATGGCT+CGG | 0.482797 | 4_2:-59040798 | Msa0611040:CDS |
| ACATCCACAAACAATGTTGT+AGG | 0.488553 | 4_2:+59040129 | None:intergenic |
| CTTGCGAAATTCGAATATCT+AGG | 0.495048 | 4_2:-59041036 | Msa0611040:CDS |
| ACAGTGTTACATACCTCTGC+CGG | 0.500194 | 4_2:+59041305 | None:intergenic |
| CGTCTTGATATGGATGACTC+TGG | 0.502279 | 4_2:-59041117 | Msa0611040:CDS |
| TGGAGGTTGAGAAAGAATAT+AGG | 0.505564 | 4_2:-59040275 | Msa0611040:CDS |
| ACAACCTCCTGCGCGACTTG+TGG | 0.513014 | 4_2:+59040922 | None:intergenic |
| AATATCAATGACTTCTTGAT+GGG | 0.513294 | 4_2:+59040885 | None:intergenic |
| GGTAACAATGAACATGTTCA+AGG | 0.514845 | 4_2:+59041011 | None:intergenic |
| AAACAAATTGCTCAAAGCGA+TGG | 0.528748 | 4_2:+59040815 | None:intergenic |
| GCTAAGAAAGTGGATGATCT+TGG | 0.529305 | 4_2:-59040304 | Msa0611040:CDS |
| TCCGTTCAGCCGTGTTTAGA+CGG | 0.534125 | 4_2:+59040250 | None:intergenic |
| ATTAGGGATCACGATGGCAG+AGG | 0.543948 | 4_2:-59041150 | Msa0611040:CDS |
| TTAGGGATCACGATGGCAGA+GGG | 0.544981 | 4_2:-59041149 | Msa0611040:CDS |
| TCTGGATTAGCATCAGCCAT+GGG | 0.547568 | 4_2:+59040988 | None:intergenic |
| TATTGACTGTGCTAAGAAAG+TGG | 0.549326 | 4_2:-59040314 | Msa0611040:CDS |
| TTTCGTAAGCATGGTGAACC+CGG | 0.556913 | 4_2:-59041324 | None:intergenic |
| TTCTTAGGAGAAAGTACCTG+TGG | 0.560267 | 4_2:-59041229 | Msa0611040:intron |
| TTCTGGATTAGCATCAGCCA+TGG | 0.566437 | 4_2:+59040987 | None:intergenic |
| TCTGGAATTTCAATGAAGAA+TGG | 0.568291 | 4_2:-59041099 | Msa0611040:CDS |
| AAACACGGCTGAACGGAACA+AGG | 0.570782 | 4_2:-59040244 | Msa0611040:CDS |
| TCAGATGAAGACCAAGATGA+AGG | 0.574883 | 4_2:-59040859 | Msa0611040:CDS |
| TTTATGGACAACCAATGGTA+AGG | 0.576804 | 4_2:-59040771 | Msa0611040:intron |
| TCCACAAACAATGTTGTAGG+AGG | 0.578109 | 4_2:+59040132 | None:intergenic |
| AAGCATGGTGAACCCGGCAG+AGG | 0.586095 | 4_2:-59041318 | None:intergenic |
| TGAAAATCCACAAGTCGCGC+AGG | 0.590768 | 4_2:-59040929 | Msa0611040:CDS |
| GCCGTCTAAACACGGCTGAA+CGG | 0.592455 | 4_2:-59040251 | Msa0611040:CDS |
| GATGATCTTGGTTGATCTGG+AGG | 0.594823 | 4_2:-59040292 | Msa0611040:CDS |
| AGATGAAGGTGAGCAAGAAG+AGG | 0.595301 | 4_2:-59040845 | Msa0611040:CDS |
| TATTCGAATTTCGCAAGAGT+AGG | 0.596636 | 4_2:+59041042 | None:intergenic |
| CAGTGTTACATACCTCTGCC+GGG | 0.597890 | 4_2:+59041306 | None:intergenic |
| ACTCTACAAATTAACAAGCA+AGG | 0.598382 | 4_2:-59041177 | Msa0611040:CDS |
| AGGTAGAATTGAAAATCCAC+AGG | 0.601572 | 4_2:+59041213 | None:intergenic |
| GTCTGTTTATGGACAACCAA+TGG | 0.604681 | 4_2:-59040776 | Msa0611040:CDS |
| TGTCACCCTCTTGTAGGCGA+CGG | 0.606670 | 4_2:+59040178 | None:intergenic |
| CAAATTGCTCAAAGCGATGG+GGG | 0.606738 | 4_2:+59040818 | None:intergenic |
| CAAAGACCGTCGCCTACAAG+AGG | 0.619952 | 4_2:-59040184 | Msa0611040:CDS |
| GTAACAATGAACATGTTCAA+GGG | 0.625828 | 4_2:+59041012 | None:intergenic |
| AAATCCACAAGTCGCGCAGG+AGG | 0.634892 | 4_2:-59040926 | Msa0611040:CDS |
| TGTTTGTGGATGTGGTGCGT+AGG | 0.638563 | 4_2:-59040119 | Msa0611040:CDS |
| ATATAGGTGCCGTCTAAACA+CGG | 0.646119 | 4_2:-59040259 | Msa0611040:CDS |
| CAGAGTCATCCATATCAAGA+CGG | 0.651142 | 4_2:+59041118 | None:intergenic |
| ACAAATTGCTCAAAGCGATG+GGG | 0.652309 | 4_2:+59040817 | None:intergenic |
| CTGGATTAGCATCAGCCATG+GGG | 0.653003 | 4_2:+59040989 | None:intergenic |
| CCACAAACAATGTTGTAGGA+GGG | 0.653871 | 4_2:+59040133 | None:intergenic |
| TCCAGAAGTTGCCAACAATG+TGG | 0.656828 | 4_2:-59040971 | Msa0611040:CDS |
| AAAGACCGTCGCCTACAAGA+GGG | 0.680199 | 4_2:-59040183 | Msa0611040:CDS |
| AACACGGCTGAACGGAACAA+GGG | 0.683539 | 4_2:-59040243 | Msa0611040:CDS |
| TGGATTAGCATCAGCCATGG+GGG | 0.691846 | 4_2:+59040990 | None:intergenic |
| GGATTTATTAGGGATCACGA+TGG | 0.729747 | 4_2:-59041156 | Msa0611040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATAAATATTATTGATA+AGG | + | chr4_2:59040692-59040711 | None:intergenic | 10.0% |
| !! | TAATATTTATTTCAAAAATG+AGG | - | chr4_2:59040698-59040717 | Msa0611040:intron | 10.0% |
| !! | TGAAATAAATATTATTGATA+AGG | + | chr4_2:59040692-59040711 | None:intergenic | 10.0% |
| !! | TAATATTTATTTCAAAAATG+AGG | - | chr4_2:59040698-59040717 | Msa0611040:intron | 10.0% |
| !! | AATATAACTTTGATATAATG+TGG | - | chr4_2:59040870-59040889 | Msa0611040:CDS | 15.0% |
| !!! | TTTTTATGTGCAATATAATA+AGG | - | chr4_2:59041031-59041050 | Msa0611040:CDS | 15.0% |
| !! | AATATAACTTTGATATAATG+TGG | - | chr4_2:59040870-59040889 | Msa0611040:CDS | 15.0% |
| !!! | TTTTTATGTGCAATATAATA+AGG | - | chr4_2:59041031-59041050 | Msa0611040:CDS | 15.0% |
| !! | CTAAGAACAACAAATATAAA+TGG | + | chr4_2:59040176-59040195 | None:intergenic | 20.0% |
| !!! | CATTTATATTTGTTGTTCTT+AGG | - | chr4_2:59040174-59040193 | Msa0611040:CDS | 20.0% |
| !! | AAATATTATTGATAAGGAGA+AGG | + | chr4_2:59040686-59040705 | None:intergenic | 20.0% |
| !! | CAATATTTATTAGATCAAAC+TGG | + | chr4_2:59040843-59040862 | None:intergenic | 20.0% |
| !! | AAAATGCTATACAAAAGATA+TGG | + | chr4_2:59041062-59041081 | None:intergenic | 20.0% |
| !! | CTAAGAACAACAAATATAAA+TGG | + | chr4_2:59040176-59040195 | None:intergenic | 20.0% |
| !!! | CATTTATATTTGTTGTTCTT+AGG | - | chr4_2:59040174-59040193 | Msa0611040:CDS | 20.0% |
| !! | AAATATTATTGATAAGGAGA+AGG | + | chr4_2:59040686-59040705 | None:intergenic | 20.0% |
| !! | CAATATTTATTAGATCAAAC+TGG | + | chr4_2:59040843-59040862 | None:intergenic | 20.0% |
| !! | AAAATGCTATACAAAAGATA+TGG | + | chr4_2:59041062-59041081 | None:intergenic | 20.0% |
| ! | TTAACAAGCAAGGATTTATT+AGG | - | chr4_2:59040251-59040270 | Msa0611040:CDS | 25.0% |
| ! | TAACAAGCAAGGATTTATTA+GGG | - | chr4_2:59040252-59040271 | Msa0611040:CDS | 25.0% |
| ! | AATATCAATGACTTCTTGAT+GGG | + | chr4_2:59040536-59040555 | None:intergenic | 25.0% |
| ! | TAATATCAATGACTTCTTGA+TGG | + | chr4_2:59040537-59040556 | None:intergenic | 25.0% |
| !!! | TTTTTAGTATACCTTACCAT+TGG | + | chr4_2:59040661-59040680 | None:intergenic | 25.0% |
| ! | ATAAAACATAAGGTGGAATT+TGG | + | chr4_2:59040761-59040780 | None:intergenic | 25.0% |
| !!! | TTTTTCAAAGTATCTTGAGT+TGG | - | chr4_2:59040910-59040929 | Msa0611040:CDS | 25.0% |
| ! | TTAACAAGCAAGGATTTATT+AGG | - | chr4_2:59040251-59040270 | Msa0611040:CDS | 25.0% |
| ! | TAACAAGCAAGGATTTATTA+GGG | - | chr4_2:59040252-59040271 | Msa0611040:CDS | 25.0% |
| ! | AATATCAATGACTTCTTGAT+GGG | + | chr4_2:59040536-59040555 | None:intergenic | 25.0% |
| ! | TAATATCAATGACTTCTTGA+TGG | + | chr4_2:59040537-59040556 | None:intergenic | 25.0% |
| !!! | TTTTTAGTATACCTTACCAT+TGG | + | chr4_2:59040661-59040680 | None:intergenic | 25.0% |
| ! | ATAAAACATAAGGTGGAATT+TGG | + | chr4_2:59040761-59040780 | None:intergenic | 25.0% |
| !!! | TTTTTCAAAGTATCTTGAGT+TGG | - | chr4_2:59040910-59040929 | Msa0611040:CDS | 25.0% |
| ACTCTACAAATTAACAAGCA+AGG | - | chr4_2:59040241-59040260 | Msa0611040:CDS | 30.0% | |
| ! | TCTGGAATTTCAATGAAGAA+TGG | - | chr4_2:59040319-59040338 | Msa0611040:CDS | 30.0% |
| GTAACAATGAACATGTTCAA+GGG | + | chr4_2:59040409-59040428 | None:intergenic | 30.0% | |
| AACAAGGGTGAAAAATCATT+GGG | - | chr4_2:59041190-59041209 | Msa0611040:CDS | 30.0% | |
| ACTCTACAAATTAACAAGCA+AGG | - | chr4_2:59040241-59040260 | Msa0611040:CDS | 30.0% | |
| ! | TCTGGAATTTCAATGAAGAA+TGG | - | chr4_2:59040319-59040338 | Msa0611040:CDS | 30.0% |
| GTAACAATGAACATGTTCAA+GGG | + | chr4_2:59040409-59040428 | None:intergenic | 30.0% | |
| AACAAGGGTGAAAAATCATT+GGG | - | chr4_2:59041190-59041209 | Msa0611040:CDS | 30.0% | |
| AGGTAGAATTGAAAATCCAC+AGG | + | chr4_2:59040208-59040227 | None:intergenic | 35.0% | |
| ! | GTAGAGTGTCTTGATTTCTT+AGG | + | chr4_2:59040228-59040247 | None:intergenic | 35.0% |
| GATTGTTATCCGTCTTGATA+TGG | - | chr4_2:59040291-59040310 | Msa0611040:CDS | 35.0% | |
| TATTCGAATTTCGCAAGAGT+AGG | + | chr4_2:59040379-59040398 | None:intergenic | 35.0% | |
| CTTGCGAAATTCGAATATCT+AGG | - | chr4_2:59040382-59040401 | Msa0611040:intron | 35.0% | |
| GGTAACAATGAACATGTTCA+AGG | + | chr4_2:59040410-59040429 | None:intergenic | 35.0% | |
| AACAAATTGCTCAAAGCGAT+GGG | + | chr4_2:59040605-59040624 | None:intergenic | 35.0% | |
| AAACAAATTGCTCAAAGCGA+TGG | + | chr4_2:59040606-59040625 | None:intergenic | 35.0% | |
| ! | GCAATTTGTTTATGCTGCTA+TGG | - | chr4_2:59040615-59040634 | Msa0611040:intron | 35.0% |
| TTTATGGACAACCAATGGTA+AGG | - | chr4_2:59040647-59040666 | Msa0611040:intron | 35.0% | |
| TTCCATGCGCATAAAACATA+AGG | + | chr4_2:59040771-59040790 | None:intergenic | 35.0% | |
| ! | ATCTCTCTAGAAACACGATT+GGG | + | chr4_2:59041085-59041104 | None:intergenic | 35.0% |
| ! | TATCTCTCTAGAAACACGAT+TGG | + | chr4_2:59041086-59041105 | None:intergenic | 35.0% |
| ! | TATTGACTGTGCTAAGAAAG+TGG | - | chr4_2:59041104-59041123 | Msa0611040:CDS | 35.0% |
| TGGAGGTTGAGAAAGAATAT+AGG | - | chr4_2:59041143-59041162 | Msa0611040:CDS | 35.0% | |
| GAACAAGGGTGAAAAATCAT+TGG | - | chr4_2:59041189-59041208 | Msa0611040:CDS | 35.0% | |
| AAAAATCATTGGGAAGAGGA+TGG | - | chr4_2:59041200-59041219 | Msa0611040:CDS | 35.0% | |
| TGACAAGCTTATCTTTGAGT+TGG | - | chr4_2:59041258-59041277 | Msa0611040:intron | 35.0% | |
| ACATCCACAAACAATGTTGT+AGG | + | chr4_2:59041292-59041311 | None:intergenic | 35.0% | |
| TACAACATTGTTTGTGGATG+TGG | - | chr4_2:59041291-59041310 | Msa0611040:intron | 35.0% | |
| AGGTAGAATTGAAAATCCAC+AGG | + | chr4_2:59040208-59040227 | None:intergenic | 35.0% | |
| ! | GTAGAGTGTCTTGATTTCTT+AGG | + | chr4_2:59040228-59040247 | None:intergenic | 35.0% |
| GATTGTTATCCGTCTTGATA+TGG | - | chr4_2:59040291-59040310 | Msa0611040:CDS | 35.0% | |
| TATTCGAATTTCGCAAGAGT+AGG | + | chr4_2:59040379-59040398 | None:intergenic | 35.0% | |
| CTTGCGAAATTCGAATATCT+AGG | - | chr4_2:59040382-59040401 | Msa0611040:intron | 35.0% | |
| GGTAACAATGAACATGTTCA+AGG | + | chr4_2:59040410-59040429 | None:intergenic | 35.0% | |
| AACAAATTGCTCAAAGCGAT+GGG | + | chr4_2:59040605-59040624 | None:intergenic | 35.0% | |
| AAACAAATTGCTCAAAGCGA+TGG | + | chr4_2:59040606-59040625 | None:intergenic | 35.0% | |
| ! | GCAATTTGTTTATGCTGCTA+TGG | - | chr4_2:59040615-59040634 | Msa0611040:intron | 35.0% |
| TTTATGGACAACCAATGGTA+AGG | - | chr4_2:59040647-59040666 | Msa0611040:intron | 35.0% | |
| TTCCATGCGCATAAAACATA+AGG | + | chr4_2:59040771-59040790 | None:intergenic | 35.0% | |
| ! | ATCTCTCTAGAAACACGATT+GGG | + | chr4_2:59041085-59041104 | None:intergenic | 35.0% |
| ! | TATCTCTCTAGAAACACGAT+TGG | + | chr4_2:59041086-59041105 | None:intergenic | 35.0% |
| ! | TATTGACTGTGCTAAGAAAG+TGG | - | chr4_2:59041104-59041123 | Msa0611040:CDS | 35.0% |
| TGGAGGTTGAGAAAGAATAT+AGG | - | chr4_2:59041143-59041162 | Msa0611040:CDS | 35.0% | |
| GAACAAGGGTGAAAAATCAT+TGG | - | chr4_2:59041189-59041208 | Msa0611040:CDS | 35.0% | |
| AAAAATCATTGGGAAGAGGA+TGG | - | chr4_2:59041200-59041219 | Msa0611040:CDS | 35.0% | |
| TGACAAGCTTATCTTTGAGT+TGG | - | chr4_2:59041258-59041277 | Msa0611040:intron | 35.0% | |
| ACATCCACAAACAATGTTGT+AGG | + | chr4_2:59041292-59041311 | None:intergenic | 35.0% | |
| TACAACATTGTTTGTGGATG+TGG | - | chr4_2:59041291-59041310 | Msa0611040:intron | 35.0% | |
| !! | TTCTTAGGAGAAAGTACCTG+TGG | - | chr4_2:59040189-59040208 | Msa0611040:CDS | 40.0% |
| GGATTTATTAGGGATCACGA+TGG | - | chr4_2:59040262-59040281 | Msa0611040:CDS | 40.0% | |
| CAGAGTCATCCATATCAAGA+CGG | + | chr4_2:59040303-59040322 | None:intergenic | 40.0% | |
| AAGAATGGTGCCTTAATTGC+TGG | - | chr4_2:59040334-59040353 | Msa0611040:intron | 40.0% | |
| GCCTTAATTGCTGGAATGTT+TGG | - | chr4_2:59040343-59040362 | Msa0611040:intron | 40.0% | |
| GCCAAACATTCCAGCAATTA+AGG | + | chr4_2:59040347-59040366 | None:intergenic | 40.0% | |
| TTGCACTAACTCCACATTGT+TGG | + | chr4_2:59040461-59040480 | None:intergenic | 40.0% | |
| TCAGATGAAGACCAAGATGA+AGG | - | chr4_2:59040559-59040578 | Msa0611040:intron | 40.0% | |
| ACAAATTGCTCAAAGCGATG+GGG | + | chr4_2:59040604-59040623 | None:intergenic | 40.0% | |
| TTGTTTATGCTGCTATGGCT+CGG | - | chr4_2:59040620-59040639 | Msa0611040:intron | 40.0% | |
| GTCTGTTTATGGACAACCAA+TGG | - | chr4_2:59040642-59040661 | Msa0611040:intron | 40.0% | |
| CATGCGCATAAAACATAAGG+TGG | + | chr4_2:59040768-59040787 | None:intergenic | 40.0% | |
| ! | CACCTTATGTTTTATGCGCA+TGG | - | chr4_2:59040766-59040785 | Msa0611040:intron | 40.0% |
| GCTAAGAAAGTGGATGATCT+TGG | - | chr4_2:59041114-59041133 | Msa0611040:CDS | 40.0% | |
| ! | ATATAGGTGCCGTCTAAACA+CGG | - | chr4_2:59041159-59041178 | Msa0611040:CDS | 40.0% |
| GGTGAAAAATCATTGGGAAG+AGG | - | chr4_2:59041196-59041215 | Msa0611040:CDS | 40.0% | |
| CCACAAACAATGTTGTAGGA+GGG | + | chr4_2:59041288-59041307 | None:intergenic | 40.0% | |
| TCCACAAACAATGTTGTAGG+AGG | + | chr4_2:59041289-59041308 | None:intergenic | 40.0% | |
| !! | TTCTTAGGAGAAAGTACCTG+TGG | - | chr4_2:59040189-59040208 | Msa0611040:CDS | 40.0% |
| GGATTTATTAGGGATCACGA+TGG | - | chr4_2:59040262-59040281 | Msa0611040:CDS | 40.0% | |
| CAGAGTCATCCATATCAAGA+CGG | + | chr4_2:59040303-59040322 | None:intergenic | 40.0% | |
| AAGAATGGTGCCTTAATTGC+TGG | - | chr4_2:59040334-59040353 | Msa0611040:intron | 40.0% | |
| GCCTTAATTGCTGGAATGTT+TGG | - | chr4_2:59040343-59040362 | Msa0611040:intron | 40.0% | |
| GCCAAACATTCCAGCAATTA+AGG | + | chr4_2:59040347-59040366 | None:intergenic | 40.0% | |
| TTGCACTAACTCCACATTGT+TGG | + | chr4_2:59040461-59040480 | None:intergenic | 40.0% | |
| TCAGATGAAGACCAAGATGA+AGG | - | chr4_2:59040559-59040578 | Msa0611040:intron | 40.0% | |
| ACAAATTGCTCAAAGCGATG+GGG | + | chr4_2:59040604-59040623 | None:intergenic | 40.0% | |
| TTGTTTATGCTGCTATGGCT+CGG | - | chr4_2:59040620-59040639 | Msa0611040:intron | 40.0% | |
| GTCTGTTTATGGACAACCAA+TGG | - | chr4_2:59040642-59040661 | Msa0611040:intron | 40.0% | |
| CATGCGCATAAAACATAAGG+TGG | + | chr4_2:59040768-59040787 | None:intergenic | 40.0% | |
| ! | CACCTTATGTTTTATGCGCA+TGG | - | chr4_2:59040766-59040785 | Msa0611040:intron | 40.0% |
| GCTAAGAAAGTGGATGATCT+TGG | - | chr4_2:59041114-59041133 | Msa0611040:CDS | 40.0% | |
| ! | ATATAGGTGCCGTCTAAACA+CGG | - | chr4_2:59041159-59041178 | Msa0611040:CDS | 40.0% |
| GGTGAAAAATCATTGGGAAG+AGG | - | chr4_2:59041196-59041215 | Msa0611040:CDS | 40.0% | |
| CCACAAACAATGTTGTAGGA+GGG | + | chr4_2:59041288-59041307 | None:intergenic | 40.0% | |
| TCCACAAACAATGTTGTAGG+AGG | + | chr4_2:59041289-59041308 | None:intergenic | 40.0% | |
| ACAGTGTTACATACCTCTGC+CGG | + | chr4_2:59040116-59040135 | None:intergenic | 45.0% | |
| CGTCTTGATATGGATGACTC+TGG | - | chr4_2:59040301-59040320 | Msa0611040:CDS | 45.0% | |
| CATGTTCATTGTTACCCCCA+TGG | - | chr4_2:59040414-59040433 | Msa0611040:intron | 45.0% | |
| !! | TCTGGATTAGCATCAGCCAT+GGG | + | chr4_2:59040433-59040452 | None:intergenic | 45.0% |
| !! | TTCTGGATTAGCATCAGCCA+TGG | + | chr4_2:59040434-59040453 | None:intergenic | 45.0% |
| TCCAGAAGTTGCCAACAATG+TGG | - | chr4_2:59040447-59040466 | Msa0611040:intron | 45.0% | |
| TCCACATTGTTGGCAACTTC+TGG | + | chr4_2:59040451-59040470 | None:intergenic | 45.0% | |
| CTTCTTGCTCACCTTCATCT+TGG | + | chr4_2:59040573-59040592 | None:intergenic | 45.0% | |
| AGATGAAGGTGAGCAAGAAG+AGG | - | chr4_2:59040573-59040592 | Msa0611040:intron | 45.0% | |
| CAAATTGCTCAAAGCGATGG+GGG | + | chr4_2:59040603-59040622 | None:intergenic | 45.0% | |
| CAGCTCACTATGTCACATCT+TGG | + | chr4_2:59040963-59040982 | None:intergenic | 45.0% | |
| GTGGATGATCTTGGTTGATC+TGG | - | chr4_2:59041123-59041142 | Msa0611040:CDS | 45.0% | |
| GATGATCTTGGTTGATCTGG+AGG | - | chr4_2:59041126-59041145 | Msa0611040:CDS | 45.0% | |
| TAAGCTTGTCACCCTCTTGT+AGG | + | chr4_2:59041249-59041268 | None:intergenic | 45.0% | |
| CCCTCCTACAACATTGTTTG+TGG | - | chr4_2:59041285-59041304 | Msa0611040:intron | 45.0% | |
| ACAGTGTTACATACCTCTGC+CGG | + | chr4_2:59040116-59040135 | None:intergenic | 45.0% | |
| CGTCTTGATATGGATGACTC+TGG | - | chr4_2:59040301-59040320 | Msa0611040:CDS | 45.0% | |
| CATGTTCATTGTTACCCCCA+TGG | - | chr4_2:59040414-59040433 | Msa0611040:intron | 45.0% | |
| !! | TCTGGATTAGCATCAGCCAT+GGG | + | chr4_2:59040433-59040452 | None:intergenic | 45.0% |
| !! | TTCTGGATTAGCATCAGCCA+TGG | + | chr4_2:59040434-59040453 | None:intergenic | 45.0% |
| TCCAGAAGTTGCCAACAATG+TGG | - | chr4_2:59040447-59040466 | Msa0611040:intron | 45.0% | |
| TCCACATTGTTGGCAACTTC+TGG | + | chr4_2:59040451-59040470 | None:intergenic | 45.0% | |
| CTTCTTGCTCACCTTCATCT+TGG | + | chr4_2:59040573-59040592 | None:intergenic | 45.0% | |
| AGATGAAGGTGAGCAAGAAG+AGG | - | chr4_2:59040573-59040592 | Msa0611040:intron | 45.0% | |
| CAAATTGCTCAAAGCGATGG+GGG | + | chr4_2:59040603-59040622 | None:intergenic | 45.0% | |
| CAGCTCACTATGTCACATCT+TGG | + | chr4_2:59040963-59040982 | None:intergenic | 45.0% | |
| GTGGATGATCTTGGTTGATC+TGG | - | chr4_2:59041123-59041142 | Msa0611040:CDS | 45.0% | |
| GATGATCTTGGTTGATCTGG+AGG | - | chr4_2:59041126-59041145 | Msa0611040:CDS | 45.0% | |
| TAAGCTTGTCACCCTCTTGT+AGG | + | chr4_2:59041249-59041268 | None:intergenic | 45.0% | |
| CCCTCCTACAACATTGTTTG+TGG | - | chr4_2:59041285-59041304 | Msa0611040:intron | 45.0% | |
| CAGTGTTACATACCTCTGCC+GGG | + | chr4_2:59040115-59040134 | None:intergenic | 50.0% | |
| ATTAGGGATCACGATGGCAG+AGG | - | chr4_2:59040268-59040287 | Msa0611040:CDS | 50.0% | |
| TTAGGGATCACGATGGCAGA+GGG | - | chr4_2:59040269-59040288 | Msa0611040:CDS | 50.0% | |
| !! | TGGATTAGCATCAGCCATGG+GGG | + | chr4_2:59040431-59040450 | None:intergenic | 50.0% |
| !! | CTGGATTAGCATCAGCCATG+GGG | + | chr4_2:59040432-59040451 | None:intergenic | 50.0% |
| TGAAAATCCACAAGTCGCGC+AGG | - | chr4_2:59040489-59040508 | Msa0611040:intron | 50.0% | |
| !! | GCTATGGCTCGGTCTGTTTA+TGG | - | chr4_2:59040631-59040650 | Msa0611040:intron | 50.0% |
| TCCGTTCAGCCGTGTTTAGA+CGG | + | chr4_2:59041171-59041190 | None:intergenic | 50.0% | |
| AAACACGGCTGAACGGAACA+AGG | - | chr4_2:59041174-59041193 | Msa0611040:CDS | 50.0% | |
| AACACGGCTGAACGGAACAA+GGG | - | chr4_2:59041175-59041194 | Msa0611040:CDS | 50.0% | |
| AAAGACCGTCGCCTACAAGA+GGG | - | chr4_2:59041235-59041254 | Msa0611040:intron | 50.0% | |
| TGTTTGTGGATGTGGTGCGT+AGG | - | chr4_2:59041299-59041318 | Msa0611040:intron | 50.0% | |
| CAGTGTTACATACCTCTGCC+GGG | + | chr4_2:59040115-59040134 | None:intergenic | 50.0% | |
| ATTAGGGATCACGATGGCAG+AGG | - | chr4_2:59040268-59040287 | Msa0611040:CDS | 50.0% | |
| TTAGGGATCACGATGGCAGA+GGG | - | chr4_2:59040269-59040288 | Msa0611040:CDS | 50.0% | |
| !! | TGGATTAGCATCAGCCATGG+GGG | + | chr4_2:59040431-59040450 | None:intergenic | 50.0% |
| !! | CTGGATTAGCATCAGCCATG+GGG | + | chr4_2:59040432-59040451 | None:intergenic | 50.0% |
| TGAAAATCCACAAGTCGCGC+AGG | - | chr4_2:59040489-59040508 | Msa0611040:intron | 50.0% | |
| !! | GCTATGGCTCGGTCTGTTTA+TGG | - | chr4_2:59040631-59040650 | Msa0611040:intron | 50.0% |
| TCCGTTCAGCCGTGTTTAGA+CGG | + | chr4_2:59041171-59041190 | None:intergenic | 50.0% | |
| AAACACGGCTGAACGGAACA+AGG | - | chr4_2:59041174-59041193 | Msa0611040:CDS | 50.0% | |
| AACACGGCTGAACGGAACAA+GGG | - | chr4_2:59041175-59041194 | Msa0611040:CDS | 50.0% | |
| AAAGACCGTCGCCTACAAGA+GGG | - | chr4_2:59041235-59041254 | Msa0611040:intron | 50.0% | |
| TGTTTGTGGATGTGGTGCGT+AGG | - | chr4_2:59041299-59041318 | Msa0611040:intron | 50.0% | |
| AAATCCACAAGTCGCGCAGG+AGG | - | chr4_2:59040492-59040511 | Msa0611040:intron | 55.0% | |
| GCCGTCTAAACACGGCTGAA+CGG | - | chr4_2:59041167-59041186 | Msa0611040:CDS | 55.0% | |
| CAAAGACCGTCGCCTACAAG+AGG | - | chr4_2:59041234-59041253 | Msa0611040:intron | 55.0% | |
| TGTCACCCTCTTGTAGGCGA+CGG | + | chr4_2:59041243-59041262 | None:intergenic | 55.0% | |
| AAATCCACAAGTCGCGCAGG+AGG | - | chr4_2:59040492-59040511 | Msa0611040:intron | 55.0% | |
| GCCGTCTAAACACGGCTGAA+CGG | - | chr4_2:59041167-59041186 | Msa0611040:CDS | 55.0% | |
| CAAAGACCGTCGCCTACAAG+AGG | - | chr4_2:59041234-59041253 | Msa0611040:intron | 55.0% | |
| TGTCACCCTCTTGTAGGCGA+CGG | + | chr4_2:59041243-59041262 | None:intergenic | 55.0% | |
| ACAACCTCCTGCGCGACTTG+TGG | + | chr4_2:59040499-59040518 | None:intergenic | 60.0% | |
| ACAACCTCCTGCGCGACTTG+TGG | + | chr4_2:59040499-59040518 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 59040104 | 59041336 | 59040104 | ID=Msa0611040;Name=Msa0611040 |
| chr4_2 | mRNA | 59040104 | 59041336 | 59040104 | ID=Msa0611040-mRNA-1;Parent=Msa0611040;Name=Msa0611040-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.66|1|1|3|0|242 |
| chr4_2 | exon | 59041319 | 59041336 | 59041319 | ID=Msa0611040-mRNA-1:exon:15651;Parent=Msa0611040-mRNA-1 |
| chr4_2 | exon | 59040772 | 59041244 | 59040772 | ID=Msa0611040-mRNA-1:exon:15650;Parent=Msa0611040-mRNA-1 |
| chr4_2 | exon | 59040104 | 59040341 | 59040104 | ID=Msa0611040-mRNA-1:exon:15649;Parent=Msa0611040-mRNA-1 |
| chr4_2 | CDS | 59041319 | 59041336 | 59041319 | ID=Msa0611040-mRNA-1:cds;Parent=Msa0611040-mRNA-1 |
| chr4_2 | CDS | 59040772 | 59041244 | 59040772 | ID=Msa0611040-mRNA-1:cds;Parent=Msa0611040-mRNA-1 |
| chr4_2 | CDS | 59040104 | 59040341 | 59040104 | ID=Msa0611040-mRNA-1:cds;Parent=Msa0611040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
