Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611160 | XP_003607938.1 | 91.475 | 305 | 22 | 2 | 1 | 301 | 1 | 305 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611160 | sp|Q9FXA3|BH095_ARATH | 43.056 | 216 | 85 | 5 | 88 | 275 | 70 | 275 | 9.02e-41 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0611160 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611160 | MtrunA17_Chr4g0044621 | 91.475 | 305 | 22 | 2 | 1 | 301 | 1 | 305 | 0.0 | 523 |
| Msa0611160 | MtrunA17_Chr4g0044611 | 88.889 | 279 | 26 | 3 | 1 | 275 | 1 | 278 | 6.24e-165 | 460 |
| Msa0611160 | MtrunA17_Chr4g0042511 | 43.841 | 276 | 121 | 6 | 1 | 275 | 1 | 243 | 1.01e-50 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611160 | AT1G49770.1 | 43.056 | 216 | 85 | 5 | 88 | 275 | 70 | 275 | 9.17e-42 | 146 |
Find 61 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTGATTCCTTCTTTC+TGG | 0.014189 | 4_2:+59277784 | None:intergenic |
| GCTTCCTGAACTTCCTTCTA+AGG | 0.247562 | 4_2:-59277580 | Msa0611160:intron |
| CCTAAGTTATGATTAGAGTT+TGG | 0.258500 | 4_2:+59277843 | None:intergenic |
| GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4_2:+59276219 | None:intergenic |
| TGGAAACTTCTACATGATTA+TGG | 0.312756 | 4_2:-59275936 | Msa0611160:CDS |
| CTAAGTTATGATTAGAGTTT+GGG | 0.313394 | 4_2:+59277844 | None:intergenic |
| AAATGAATTTATACCTTAGA+AGG | 0.315805 | 4_2:+59277567 | None:intergenic |
| ATTCCTTCTTTCTGGTTCAA+TGG | 0.328467 | 4_2:+59277792 | None:intergenic |
| ATGTTCAAACAAATTTCATT+TGG | 0.345668 | 4_2:-59277890 | Msa0611160:CDS |
| TGTTCAAACAAATTTCATTT+GGG | 0.373120 | 4_2:-59277889 | Msa0611160:CDS |
| TATACCTTAGAAGGAAGTTC+AGG | 0.398193 | 4_2:+59277576 | None:intergenic |
| TCTCTTGACCACAATTGCTT+TGG | 0.400979 | 4_2:-59276014 | Msa0611160:CDS |
| GACCACAATTGCTTTGGTGC+TGG | 0.421423 | 4_2:-59276008 | Msa0611160:CDS |
| CCGATTTCTCTTCTTGCTCA+CGG | 0.425778 | 4_2:+59277752 | None:intergenic |
| CCGTGAGCAAGAAGAGAAAT+CGG | 0.430632 | 4_2:-59277752 | Msa0611160:CDS |
| CGATTTCTCTTCTTGCTCAC+GGG | 0.436559 | 4_2:+59277753 | None:intergenic |
| AACATTATGTGCAATGCAAA+TGG | 0.441341 | 4_2:-59275956 | Msa0611160:CDS |
| AGTGAGAATAATATTGCAAC+TGG | 0.447083 | 4_2:-59277711 | Msa0611160:CDS |
| CTCAAATCTGTATCCCCACT+TGG | 0.456632 | 4_2:-59276277 | Msa0611160:CDS |
| GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4_2:-59277629 | Msa0611160:CDS |
| CGTGAGCAAGAAGAGAAATC+GGG | 0.482173 | 4_2:-59277751 | Msa0611160:CDS |
| AGGTGAGAGTAGCAAACAAT+TGG | 0.494891 | 4_2:-59277823 | Msa0611160:CDS |
| CTCCAGCACCAAAGCAATTG+TGG | 0.505022 | 4_2:+59276006 | None:intergenic |
| ATTTGCATTGCACATAATGT+TGG | 0.516349 | 4_2:+59275958 | None:intergenic |
| CCAAACTCTAATCATAACTT+AGG | 0.519326 | 4_2:-59277843 | Msa0611160:CDS |
| AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4_2:+59276220 | None:intergenic |
| TCATTTGGGAAAATCATCCA+TGG | 0.525272 | 4_2:-59277875 | Msa0611160:CDS |
| CAGAAAGAAGGAATCAATGA+AGG | 0.527899 | 4_2:-59277783 | Msa0611160:CDS |
| CAAGTTATTATTATAACTTG+TGG | 0.529171 | 4_2:+59276180 | None:intergenic |
| AAACCTACATGTTGTGGTGG+AGG | 0.530627 | 4_2:+59276121 | None:intergenic |
| AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4_2:-59276228 | Msa0611160:CDS |
| CATTTGGGAAAATCATCCAT+GGG | 0.537456 | 4_2:-59277874 | Msa0611160:CDS |
| ATTTGTGCAACTAAGAAGCC+TGG | 0.543272 | 4_2:-59276037 | Msa0611160:CDS |
| CAGGCAAAACAAGCTTCACA+TGG | 0.544546 | 4_2:-59275786 | Msa0611160:CDS |
| CAAGAAGAGAAATCGGGGTG+GGG | 0.550377 | 4_2:-59277745 | Msa0611160:CDS |
| GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4_2:-59276205 | Msa0611160:CDS |
| GTTCAGGAAGCAAGGCATGA+AGG | 0.554482 | 4_2:+59277592 | None:intergenic |
| AGAAGGAAGTTCAGGAAGCA+AGG | 0.555351 | 4_2:+59277584 | None:intergenic |
| ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4_2:-59277644 | Msa0611160:CDS |
| AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4_2:-59277795 | Msa0611160:CDS |
| GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4_2:+59276019 | None:intergenic |
| GCAAGAAGAGAAATCGGGGT+GGG | 0.581863 | 4_2:-59277746 | Msa0611160:CDS |
| TTGATCATGATCTACACTCA+TGG | 0.585566 | 4_2:+59277914 | None:intergenic |
| TTCACATGGCGCAAACTCGA+TGG | 0.594689 | 4_2:-59275772 | Msa0611160:CDS |
| TTACCTCCACCACAACATGT+AGG | 0.611747 | 4_2:-59276124 | Msa0611160:CDS |
| CTTCACTGCTGCATCCACAA+TGG | 0.612064 | 4_2:+59276357 | None:intergenic |
| GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4_2:-59276227 | Msa0611160:CDS |
| CAGATGACTCACTCCCAAGT+GGG | 0.617234 | 4_2:+59276263 | None:intergenic |
| TCAAATCTGTATCCCCACTT+GGG | 0.618216 | 4_2:-59276276 | Msa0611160:CDS |
| GGCTGATAAATCAACCATTG+TGG | 0.629857 | 4_2:-59276371 | Msa0611160:CDS |
| ACATGGCGCAAACTCGATGG+AGG | 0.652836 | 4_2:-59275769 | Msa0611160:CDS |
| TTAAAACCTACATGTTGTGG+TGG | 0.654855 | 4_2:+59276118 | None:intergenic |
| AATGTTGTACTGAACATATG+TGG | 0.655921 | 4_2:-59276079 | Msa0611160:CDS |
| CAGCTTTAGAAGTTATGACG+CGG | 0.659283 | 4_2:-59275731 | Msa0611160:CDS |
| GAGTTTGGGAGATCATCCCA+TGG | 0.666665 | 4_2:+59277858 | None:intergenic |
| ACAGATGACTCACTCCCAAG+TGG | 0.673465 | 4_2:+59276262 | None:intergenic |
| AGATGACTCACTCCCAAGTG+GGG | 0.684740 | 4_2:+59276264 | None:intergenic |
| GTGAGCAAGAAGAGAAATCG+GGG | 0.694598 | 4_2:-59277750 | Msa0611160:CDS |
| AGCAAGAAGAGAAATCGGGG+TGG | 0.706863 | 4_2:-59277747 | Msa0611160:CDS |
| GTTGTACTGAACATATGTGG+TGG | 0.767818 | 4_2:-59276076 | Msa0611160:CDS |
| CATCTGTGATCAACTCACAG+TGG | 0.777919 | 4_2:-59276246 | Msa0611160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTTGATAAACTTTAA+GGG | + | chr4_2:59276179-59276198 | None:intergenic | 15.0% |
| !!! | TATGATTTTGATAAACTTTA+AGG | + | chr4_2:59276180-59276199 | None:intergenic | 15.0% |
| !! | ATTAATTAGTTCAATAATCA+AGG | + | chr4_2:59276555-59276574 | None:intergenic | 15.0% |
| !!! | TTGATAGTATTCATTTATTT+AGG | - | chr4_2:59276929-59276948 | Msa0611160:intron | 15.0% |
| !! | TGATAGTATTCATTTATTTA+GGG | - | chr4_2:59276930-59276949 | Msa0611160:intron | 15.0% |
| !!! | ACTGAAATAAATAATTTTCT+TGG | - | chr4_2:59277132-59277151 | Msa0611160:intron | 15.0% |
| !!! | ATTTGATTTTGATATTTTAC+AGG | - | chr4_2:59277248-59277267 | Msa0611160:intron | 15.0% |
| !! | TAAAAATCTTGAAGAAATTA+AGG | - | chr4_2:59277311-59277330 | Msa0611160:intron | 15.0% |
| !! | GATATTAAAAAATGATAAAG+AGG | + | chr4_2:59277755-59277774 | None:intergenic | 15.0% |
| !!! | ATGATTTTGATAAACTTTAA+GGG | + | chr4_2:59276179-59276198 | None:intergenic | 15.0% |
| !!! | TATGATTTTGATAAACTTTA+AGG | + | chr4_2:59276180-59276199 | None:intergenic | 15.0% |
| !! | ATTAATTAGTTCAATAATCA+AGG | + | chr4_2:59276555-59276574 | None:intergenic | 15.0% |
| !!! | TTGATAGTATTCATTTATTT+AGG | - | chr4_2:59276929-59276948 | Msa0611160:intron | 15.0% |
| !! | TGATAGTATTCATTTATTTA+GGG | - | chr4_2:59276930-59276949 | Msa0611160:intron | 15.0% |
| !!! | ACTGAAATAAATAATTTTCT+TGG | - | chr4_2:59277132-59277151 | Msa0611160:intron | 15.0% |
| !!! | ATTTGATTTTGATATTTTAC+AGG | - | chr4_2:59277248-59277267 | Msa0611160:intron | 15.0% |
| !! | TAAAAATCTTGAAGAAATTA+AGG | - | chr4_2:59277311-59277330 | Msa0611160:intron | 15.0% |
| !! | GATATTAAAAAATGATAAAG+AGG | + | chr4_2:59277755-59277774 | None:intergenic | 15.0% |
| !! | ATGTTCAAACAAATTTCATT+TGG | - | chr4_2:59275750-59275769 | Msa0611160:CDS | 20.0% |
| !! | TGTTCAAACAAATTTCATTT+GGG | - | chr4_2:59275751-59275770 | Msa0611160:CDS | 20.0% |
| !! | AAATGAATTTATACCTTAGA+AGG | + | chr4_2:59276076-59276095 | None:intergenic | 20.0% |
| !!! | TGATTTTGATAAACTTTAAG+GGG | + | chr4_2:59276178-59276197 | None:intergenic | 20.0% |
| !! | GCAAATACAAAAATGTATTT+AGG | - | chr4_2:59276241-59276260 | Msa0611160:CDS | 20.0% |
| !! | AGTGAACACAATAAAAAAAA+TGG | - | chr4_2:59276852-59276871 | Msa0611160:intron | 20.0% |
| !!! | GAAATAAATAATTTTCTTGG+AGG | - | chr4_2:59277135-59277154 | Msa0611160:intron | 20.0% |
| !! | CTACAATTACTTATTTACTA+AGG | - | chr4_2:59277215-59277234 | Msa0611160:intron | 20.0% |
| !! | CAAGTTATTATTATAACTTG+TGG | + | chr4_2:59277463-59277482 | None:intergenic | 20.0% |
| !! | ATGTTCAAACAAATTTCATT+TGG | - | chr4_2:59275750-59275769 | Msa0611160:CDS | 20.0% |
| !! | TGTTCAAACAAATTTCATTT+GGG | - | chr4_2:59275751-59275770 | Msa0611160:CDS | 20.0% |
| !! | AAATGAATTTATACCTTAGA+AGG | + | chr4_2:59276076-59276095 | None:intergenic | 20.0% |
| !!! | TGATTTTGATAAACTTTAAG+GGG | + | chr4_2:59276178-59276197 | None:intergenic | 20.0% |
| !! | GCAAATACAAAAATGTATTT+AGG | - | chr4_2:59276241-59276260 | Msa0611160:CDS | 20.0% |
| !! | AGTGAACACAATAAAAAAAA+TGG | - | chr4_2:59276852-59276871 | Msa0611160:intron | 20.0% |
| !!! | GAAATAAATAATTTTCTTGG+AGG | - | chr4_2:59277135-59277154 | Msa0611160:intron | 20.0% |
| !! | CTACAATTACTTATTTACTA+AGG | - | chr4_2:59277215-59277234 | Msa0611160:intron | 20.0% |
| !! | CAAGTTATTATTATAACTTG+TGG | + | chr4_2:59277463-59277482 | None:intergenic | 20.0% |
| ! | CTAAGTTATGATTAGAGTTT+GGG | + | chr4_2:59275799-59275818 | None:intergenic | 25.0% |
| !! | TTTCTATATCTTTTCCGATT+TGG | - | chr4_2:59276219-59276238 | Msa0611160:CDS | 25.0% |
| !! | CATTTTTGTATTTGCCAAAT+CGG | + | chr4_2:59276236-59276255 | None:intergenic | 25.0% |
| ! | GGTAAAATTATACTTACTTC+AGG | + | chr4_2:59276618-59276637 | None:intergenic | 25.0% |
| ! | TCATATTGTAACTCAATTGT+TGG | + | chr4_2:59276767-59276786 | None:intergenic | 25.0% |
| ! | CAATTGTCAGTTAAATCTTA+CGG | - | chr4_2:59276803-59276822 | Msa0611160:intron | 25.0% |
| !!! | CTTTTCAAGTGAGAATATAA+TGG | + | chr4_2:59276878-59276897 | None:intergenic | 25.0% |
| !!! | CCATTGACTTAAATTTTCTT+AGG | + | chr4_2:59277079-59277098 | None:intergenic | 25.0% |
| ! | CCTAAGAAAATTTAAGTCAA+TGG | - | chr4_2:59277076-59277095 | Msa0611160:intron | 25.0% |
| ! | AAAATTTAAGTCAATGGCAT+TGG | - | chr4_2:59277082-59277101 | Msa0611160:intron | 25.0% |
| !!! | AACATGTAGGTTTTAAAACA+TGG | - | chr4_2:59277529-59277548 | Msa0611160:intron | 25.0% |
| ! | CTAAGTTATGATTAGAGTTT+GGG | + | chr4_2:59275799-59275818 | None:intergenic | 25.0% |
| !! | TTTCTATATCTTTTCCGATT+TGG | - | chr4_2:59276219-59276238 | Msa0611160:CDS | 25.0% |
| !! | CATTTTTGTATTTGCCAAAT+CGG | + | chr4_2:59276236-59276255 | None:intergenic | 25.0% |
| ! | GGTAAAATTATACTTACTTC+AGG | + | chr4_2:59276618-59276637 | None:intergenic | 25.0% |
| ! | TCATATTGTAACTCAATTGT+TGG | + | chr4_2:59276767-59276786 | None:intergenic | 25.0% |
| ! | CAATTGTCAGTTAAATCTTA+CGG | - | chr4_2:59276803-59276822 | Msa0611160:intron | 25.0% |
| !!! | CTTTTCAAGTGAGAATATAA+TGG | + | chr4_2:59276878-59276897 | None:intergenic | 25.0% |
| !!! | CCATTGACTTAAATTTTCTT+AGG | + | chr4_2:59277079-59277098 | None:intergenic | 25.0% |
| ! | CCTAAGAAAATTTAAGTCAA+TGG | - | chr4_2:59277076-59277095 | Msa0611160:intron | 25.0% |
| ! | AAAATTTAAGTCAATGGCAT+TGG | - | chr4_2:59277082-59277101 | Msa0611160:intron | 25.0% |
| !!! | AACATGTAGGTTTTAAAACA+TGG | - | chr4_2:59277529-59277548 | Msa0611160:intron | 25.0% |
| CCTAAGTTATGATTAGAGTT+TGG | + | chr4_2:59275800-59275819 | None:intergenic | 30.0% | |
| CCAAACTCTAATCATAACTT+AGG | - | chr4_2:59275797-59275816 | Msa0611160:intron | 30.0% | |
| AGTGAGAATAATATTGCAAC+TGG | - | chr4_2:59275929-59275948 | Msa0611160:intron | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4_2:59275996-59276015 | Msa0611160:CDS | 30.0% |
| ! | GATAAACTTTAAGGGGAAAA+AGG | + | chr4_2:59276171-59276190 | None:intergenic | 30.0% |
| !!! | TTTTTTTAGCCTGATCAAGA+AGG | + | chr4_2:59276310-59276329 | None:intergenic | 30.0% |
| AAACAACACTCATATAAGCT+AGG | - | chr4_2:59276336-59276355 | Msa0611160:CDS | 30.0% | |
| AACAACACTCATATAAGCTA+GGG | - | chr4_2:59276337-59276356 | Msa0611160:CDS | 30.0% | |
| TCCAAGTTTGACATTGTATA+CGG | + | chr4_2:59276501-59276520 | None:intergenic | 30.0% | |
| ACCACTTAAGTTCAATTGTT+TGG | - | chr4_2:59276706-59276725 | Msa0611160:intron | 30.0% | |
| ACCAAACAATTGAACTTAAG+TGG | + | chr4_2:59276710-59276729 | None:intergenic | 30.0% | |
| AATAAAGACTTCAAGTCCAT+GGG | + | chr4_2:59276975-59276994 | None:intergenic | 30.0% | |
| AAATAAAGACTTCAAGTCCA+TGG | + | chr4_2:59276976-59276995 | None:intergenic | 30.0% | |
| !!! | GTTTTAAAACCTACATGTTG+TGG | + | chr4_2:59277528-59277547 | None:intergenic | 30.0% |
| AATGTTGTACTGAACATATG+TGG | - | chr4_2:59277561-59277580 | Msa0611160:intron | 30.0% | |
| ATTTGCATTGCACATAATGT+TGG | + | chr4_2:59277685-59277704 | None:intergenic | 30.0% | |
| AACATTATGTGCAATGCAAA+TGG | - | chr4_2:59277684-59277703 | Msa0611160:CDS | 30.0% | |
| TGGAAACTTCTACATGATTA+TGG | - | chr4_2:59277704-59277723 | Msa0611160:CDS | 30.0% | |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4_2:59277730-59277749 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4_2:59277747-59277766 | None:intergenic | 30.0% | |
| !!! | TTGAATTGTGTTGATTTTGC+AGG | - | chr4_2:59277835-59277854 | Msa0611160:CDS | 30.0% |
| CCTAAGTTATGATTAGAGTT+TGG | + | chr4_2:59275800-59275819 | None:intergenic | 30.0% | |
| CCAAACTCTAATCATAACTT+AGG | - | chr4_2:59275797-59275816 | Msa0611160:intron | 30.0% | |
| AGTGAGAATAATATTGCAAC+TGG | - | chr4_2:59275929-59275948 | Msa0611160:intron | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4_2:59275996-59276015 | Msa0611160:CDS | 30.0% |
| ! | GATAAACTTTAAGGGGAAAA+AGG | + | chr4_2:59276171-59276190 | None:intergenic | 30.0% |
| !!! | TTTTTTTAGCCTGATCAAGA+AGG | + | chr4_2:59276310-59276329 | None:intergenic | 30.0% |
| AAACAACACTCATATAAGCT+AGG | - | chr4_2:59276336-59276355 | Msa0611160:CDS | 30.0% | |
| AACAACACTCATATAAGCTA+GGG | - | chr4_2:59276337-59276356 | Msa0611160:CDS | 30.0% | |
| TCCAAGTTTGACATTGTATA+CGG | + | chr4_2:59276501-59276520 | None:intergenic | 30.0% | |
| ACCACTTAAGTTCAATTGTT+TGG | - | chr4_2:59276706-59276725 | Msa0611160:intron | 30.0% | |
| ACCAAACAATTGAACTTAAG+TGG | + | chr4_2:59276710-59276729 | None:intergenic | 30.0% | |
| AATAAAGACTTCAAGTCCAT+GGG | + | chr4_2:59276975-59276994 | None:intergenic | 30.0% | |
| AAATAAAGACTTCAAGTCCA+TGG | + | chr4_2:59276976-59276995 | None:intergenic | 30.0% | |
| !!! | GTTTTAAAACCTACATGTTG+TGG | + | chr4_2:59277528-59277547 | None:intergenic | 30.0% |
| AATGTTGTACTGAACATATG+TGG | - | chr4_2:59277561-59277580 | Msa0611160:intron | 30.0% | |
| ATTTGCATTGCACATAATGT+TGG | + | chr4_2:59277685-59277704 | None:intergenic | 30.0% | |
| AACATTATGTGCAATGCAAA+TGG | - | chr4_2:59277684-59277703 | Msa0611160:CDS | 30.0% | |
| TGGAAACTTCTACATGATTA+TGG | - | chr4_2:59277704-59277723 | Msa0611160:CDS | 30.0% | |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4_2:59277730-59277749 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4_2:59277747-59277766 | None:intergenic | 30.0% | |
| !!! | TTGAATTGTGTTGATTTTGC+AGG | - | chr4_2:59277835-59277854 | Msa0611160:CDS | 30.0% |
| TTGATCATGATCTACACTCA+TGG | + | chr4_2:59275729-59275748 | None:intergenic | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4_2:59275765-59275784 | Msa0611160:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4_2:59275766-59275785 | Msa0611160:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4_2:59275845-59275864 | Msa0611160:intron | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4_2:59275851-59275870 | None:intergenic | 35.0% |
| !! | CTTCATTGATTCCTTCTTTC+TGG | + | chr4_2:59275859-59275878 | None:intergenic | 35.0% |
| CAGAAAGAAGGAATCAATGA+AGG | - | chr4_2:59275857-59275876 | Msa0611160:intron | 35.0% | |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4_2:59276011-59276030 | Msa0611160:CDS | 35.0% | |
| TATACCTTAGAAGGAAGTTC+AGG | + | chr4_2:59276067-59276086 | None:intergenic | 35.0% | |
| TTTAAGAACCCTAGCTAGAT+GGG | + | chr4_2:59276412-59276431 | None:intergenic | 35.0% | |
| ATCTAGCTAGGGTTCTTAAA+GGG | - | chr4_2:59276412-59276431 | Msa0611160:intron | 35.0% | |
| TCCTTCTTGTTACCATAGAT+AGG | - | chr4_2:59276467-59276486 | Msa0611160:intron | 35.0% | |
| CCTTCTTGTTACCATAGATA+GGG | - | chr4_2:59276468-59276487 | Msa0611160:intron | 35.0% | |
| CCAAGTTTGACATTGTATAC+GGG | + | chr4_2:59276500-59276519 | None:intergenic | 35.0% | |
| ! | TTTTTGTGTCAACCTCAGTT+CGG | - | chr4_2:59276591-59276610 | Msa0611160:intron | 35.0% |
| TACCAAAAATCGATCCATTC+AGG | - | chr4_2:59276634-59276653 | Msa0611160:intron | 35.0% | |
| !! | TTCCTGAATGGATCGATTTT+TGG | + | chr4_2:59276639-59276658 | None:intergenic | 35.0% |
| AAAATCGATCCATTCAGGAA+TGG | - | chr4_2:59276639-59276658 | Msa0611160:intron | 35.0% | |
| GTGGTTAATGAATTCCACAA+AGG | + | chr4_2:59276691-59276710 | None:intergenic | 35.0% | |
| TCAGTTAAATCTTACGGTTG+AGG | - | chr4_2:59276809-59276828 | Msa0611160:intron | 35.0% | |
| ! | ATTTAAGTCAATGGCATTGG+TGG | - | chr4_2:59277085-59277104 | Msa0611160:intron | 35.0% |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4_2:59277423-59277442 | None:intergenic | 35.0% | |
| TTAAAACCTACATGTTGTGG+TGG | + | chr4_2:59277525-59277544 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4_2:59277731-59277750 | None:intergenic | 35.0% |
| TTGATCATGATCTACACTCA+TGG | + | chr4_2:59275729-59275748 | None:intergenic | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4_2:59275765-59275784 | Msa0611160:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4_2:59275766-59275785 | Msa0611160:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4_2:59275845-59275864 | Msa0611160:intron | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4_2:59275851-59275870 | None:intergenic | 35.0% |
| !! | CTTCATTGATTCCTTCTTTC+TGG | + | chr4_2:59275859-59275878 | None:intergenic | 35.0% |
| CAGAAAGAAGGAATCAATGA+AGG | - | chr4_2:59275857-59275876 | Msa0611160:intron | 35.0% | |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4_2:59276011-59276030 | Msa0611160:CDS | 35.0% | |
| TATACCTTAGAAGGAAGTTC+AGG | + | chr4_2:59276067-59276086 | None:intergenic | 35.0% | |
| TTTAAGAACCCTAGCTAGAT+GGG | + | chr4_2:59276412-59276431 | None:intergenic | 35.0% | |
| ATCTAGCTAGGGTTCTTAAA+GGG | - | chr4_2:59276412-59276431 | Msa0611160:intron | 35.0% | |
| TCCTTCTTGTTACCATAGAT+AGG | - | chr4_2:59276467-59276486 | Msa0611160:intron | 35.0% | |
| CCTTCTTGTTACCATAGATA+GGG | - | chr4_2:59276468-59276487 | Msa0611160:intron | 35.0% | |
| CCAAGTTTGACATTGTATAC+GGG | + | chr4_2:59276500-59276519 | None:intergenic | 35.0% | |
| ! | TTTTTGTGTCAACCTCAGTT+CGG | - | chr4_2:59276591-59276610 | Msa0611160:intron | 35.0% |
| TACCAAAAATCGATCCATTC+AGG | - | chr4_2:59276634-59276653 | Msa0611160:intron | 35.0% | |
| !! | TTCCTGAATGGATCGATTTT+TGG | + | chr4_2:59276639-59276658 | None:intergenic | 35.0% |
| AAAATCGATCCATTCAGGAA+TGG | - | chr4_2:59276639-59276658 | Msa0611160:intron | 35.0% | |
| GTGGTTAATGAATTCCACAA+AGG | + | chr4_2:59276691-59276710 | None:intergenic | 35.0% | |
| TCAGTTAAATCTTACGGTTG+AGG | - | chr4_2:59276809-59276828 | Msa0611160:intron | 35.0% | |
| ! | ATTTAAGTCAATGGCATTGG+TGG | - | chr4_2:59277085-59277104 | Msa0611160:intron | 35.0% |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4_2:59277423-59277442 | None:intergenic | 35.0% | |
| TTAAAACCTACATGTTGTGG+TGG | + | chr4_2:59277525-59277544 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4_2:59277731-59277750 | None:intergenic | 35.0% |
| AGGTGAGAGTAGCAAACAAT+TGG | - | chr4_2:59275817-59275836 | Msa0611160:intron | 40.0% | |
| GAACTTTCTCCTTCTTGATC+AGG | - | chr4_2:59276298-59276317 | Msa0611160:CDS | 40.0% | |
| TTAAGAACCCTAGCTAGATG+GGG | + | chr4_2:59276411-59276430 | None:intergenic | 40.0% | |
| ! | CTTTAAGAACCCTAGCTAGA+TGG | + | chr4_2:59276413-59276432 | None:intergenic | 40.0% |
| CATCTAGCTAGGGTTCTTAA+AGG | - | chr4_2:59276411-59276430 | Msa0611160:intron | 40.0% | |
| TCTAGCTAGGGTTCTTAAAG+GGG | - | chr4_2:59276413-59276432 | Msa0611160:intron | 40.0% | |
| AAAGGGGCAATAGATCTACT+AGG | - | chr4_2:59276429-59276448 | Msa0611160:intron | 40.0% | |
| AAGGGGCAATAGATCTACTA+GGG | - | chr4_2:59276430-59276449 | Msa0611160:intron | 40.0% | |
| CCCTATCTATGGTAACAAGA+AGG | + | chr4_2:59276471-59276490 | None:intergenic | 40.0% | |
| TGTTACCATAGATAGGGATC+TGG | - | chr4_2:59276474-59276493 | Msa0611160:intron | 40.0% | |
| CCCGTATACAATGTCAAACT+TGG | - | chr4_2:59276497-59276516 | Msa0611160:intron | 40.0% | |
| TCCATTCAGGAATGGAATTC+AGG | - | chr4_2:59276647-59276666 | Msa0611160:intron | 40.0% | |
| ACCTGAATTCCATTCCTGAA+TGG | + | chr4_2:59276651-59276670 | None:intergenic | 40.0% | |
| TGAATTCCACAAAGGACGAA+TGG | + | chr4_2:59276683-59276702 | None:intergenic | 40.0% | |
| GGCTGATAAATCAACCATTG+TGG | - | chr4_2:59277269-59277288 | Msa0611160:intron | 40.0% | |
| TCAAATCTGTATCCCCACTT+GGG | - | chr4_2:59277364-59277383 | Msa0611160:intron | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4_2:59277424-59277443 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4_2:59277435-59277454 | Msa0611160:intron | 40.0% |
| GTTGTACTGAACATATGTGG+TGG | - | chr4_2:59277564-59277583 | Msa0611160:intron | 40.0% | |
| ATTTGTGCAACTAAGAAGCC+TGG | - | chr4_2:59277603-59277622 | Msa0611160:CDS | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4_2:59277626-59277645 | Msa0611160:CDS | 40.0% | |
| !! | CAGCTTTAGAAGTTATGACG+CGG | - | chr4_2:59277909-59277928 | Msa0611160:CDS | 40.0% |
| AGGTGAGAGTAGCAAACAAT+TGG | - | chr4_2:59275817-59275836 | Msa0611160:intron | 40.0% | |
| GAACTTTCTCCTTCTTGATC+AGG | - | chr4_2:59276298-59276317 | Msa0611160:CDS | 40.0% | |
| TTAAGAACCCTAGCTAGATG+GGG | + | chr4_2:59276411-59276430 | None:intergenic | 40.0% | |
| ! | CTTTAAGAACCCTAGCTAGA+TGG | + | chr4_2:59276413-59276432 | None:intergenic | 40.0% |
| CATCTAGCTAGGGTTCTTAA+AGG | - | chr4_2:59276411-59276430 | Msa0611160:intron | 40.0% | |
| TCTAGCTAGGGTTCTTAAAG+GGG | - | chr4_2:59276413-59276432 | Msa0611160:intron | 40.0% | |
| AAAGGGGCAATAGATCTACT+AGG | - | chr4_2:59276429-59276448 | Msa0611160:intron | 40.0% | |
| AAGGGGCAATAGATCTACTA+GGG | - | chr4_2:59276430-59276449 | Msa0611160:intron | 40.0% | |
| CCCTATCTATGGTAACAAGA+AGG | + | chr4_2:59276471-59276490 | None:intergenic | 40.0% | |
| TGTTACCATAGATAGGGATC+TGG | - | chr4_2:59276474-59276493 | Msa0611160:intron | 40.0% | |
| CCCGTATACAATGTCAAACT+TGG | - | chr4_2:59276497-59276516 | Msa0611160:intron | 40.0% | |
| TCCATTCAGGAATGGAATTC+AGG | - | chr4_2:59276647-59276666 | Msa0611160:intron | 40.0% | |
| ACCTGAATTCCATTCCTGAA+TGG | + | chr4_2:59276651-59276670 | None:intergenic | 40.0% | |
| TGAATTCCACAAAGGACGAA+TGG | + | chr4_2:59276683-59276702 | None:intergenic | 40.0% | |
| GGCTGATAAATCAACCATTG+TGG | - | chr4_2:59277269-59277288 | Msa0611160:intron | 40.0% | |
| TCAAATCTGTATCCCCACTT+GGG | - | chr4_2:59277364-59277383 | Msa0611160:intron | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4_2:59277424-59277443 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4_2:59277435-59277454 | Msa0611160:intron | 40.0% |
| GTTGTACTGAACATATGTGG+TGG | - | chr4_2:59277564-59277583 | Msa0611160:intron | 40.0% | |
| ATTTGTGCAACTAAGAAGCC+TGG | - | chr4_2:59277603-59277622 | Msa0611160:CDS | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4_2:59277626-59277645 | Msa0611160:CDS | 40.0% | |
| !! | CAGCTTTAGAAGTTATGACG+CGG | - | chr4_2:59277909-59277928 | Msa0611160:CDS | 40.0% |
| CGATTTCTCTTCTTGCTCAC+GGG | + | chr4_2:59275890-59275909 | None:intergenic | 45.0% | |
| CCGATTTCTCTTCTTGCTCA+CGG | + | chr4_2:59275891-59275910 | None:intergenic | 45.0% | |
| CCGTGAGCAAGAAGAGAAAT+CGG | - | chr4_2:59275888-59275907 | Msa0611160:intron | 45.0% | |
| CGTGAGCAAGAAGAGAAATC+GGG | - | chr4_2:59275889-59275908 | Msa0611160:intron | 45.0% | |
| GTGAGCAAGAAGAGAAATCG+GGG | - | chr4_2:59275890-59275909 | Msa0611160:intron | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | + | chr4_2:59276059-59276078 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | - | chr4_2:59276060-59276079 | Msa0611160:CDS | 45.0% | |
| ! | TAGCTAGATGGGGGCTTTTA+AGG | + | chr4_2:59276401-59276420 | None:intergenic | 45.0% |
| TTAAAAGCCCCCATCTAGCT+AGG | - | chr4_2:59276400-59276419 | Msa0611160:intron | 45.0% | |
| TAAAAGCCCCCATCTAGCTA+GGG | - | chr4_2:59276401-59276420 | Msa0611160:intron | 45.0% | |
| TAAGAACCCTAGCTAGATGG+GGG | + | chr4_2:59276410-59276429 | None:intergenic | 45.0% | |
| TCTGAACCATTCGTCCTTTG+TGG | - | chr4_2:59276674-59276693 | Msa0611160:intron | 45.0% | |
| ACAGTATTAGAGCCAACCCA+TGG | - | chr4_2:59276956-59276975 | Msa0611160:intron | 45.0% | |
| AAGACTTCAAGTCCATGGGT+TGG | + | chr4_2:59276971-59276990 | None:intergenic | 45.0% | |
| CTCAAATCTGTATCCCCACT+TGG | - | chr4_2:59277363-59277382 | Msa0611160:intron | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | - | chr4_2:59277394-59277413 | Msa0611160:intron | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4_2:59277412-59277431 | Msa0611160:intron | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4_2:59277413-59277432 | Msa0611160:intron | 45.0% | |
| TTACCTCCACCACAACATGT+AGG | - | chr4_2:59277516-59277535 | Msa0611160:intron | 45.0% | |
| AAACCTACATGTTGTGGTGG+AGG | + | chr4_2:59277522-59277541 | None:intergenic | 45.0% | |
| CAGGCAAAACAAGCTTCACA+TGG | - | chr4_2:59277854-59277873 | Msa0611160:CDS | 45.0% | |
| CGATTTCTCTTCTTGCTCAC+GGG | + | chr4_2:59275890-59275909 | None:intergenic | 45.0% | |
| CCGATTTCTCTTCTTGCTCA+CGG | + | chr4_2:59275891-59275910 | None:intergenic | 45.0% | |
| CCGTGAGCAAGAAGAGAAAT+CGG | - | chr4_2:59275888-59275907 | Msa0611160:intron | 45.0% | |
| CGTGAGCAAGAAGAGAAATC+GGG | - | chr4_2:59275889-59275908 | Msa0611160:intron | 45.0% | |
| GTGAGCAAGAAGAGAAATCG+GGG | - | chr4_2:59275890-59275909 | Msa0611160:intron | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | + | chr4_2:59276059-59276078 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | - | chr4_2:59276060-59276079 | Msa0611160:CDS | 45.0% | |
| ! | TAGCTAGATGGGGGCTTTTA+AGG | + | chr4_2:59276401-59276420 | None:intergenic | 45.0% |
| TTAAAAGCCCCCATCTAGCT+AGG | - | chr4_2:59276400-59276419 | Msa0611160:intron | 45.0% | |
| TAAAAGCCCCCATCTAGCTA+GGG | - | chr4_2:59276401-59276420 | Msa0611160:intron | 45.0% | |
| TAAGAACCCTAGCTAGATGG+GGG | + | chr4_2:59276410-59276429 | None:intergenic | 45.0% | |
| TCTGAACCATTCGTCCTTTG+TGG | - | chr4_2:59276674-59276693 | Msa0611160:intron | 45.0% | |
| ACAGTATTAGAGCCAACCCA+TGG | - | chr4_2:59276956-59276975 | Msa0611160:intron | 45.0% | |
| AAGACTTCAAGTCCATGGGT+TGG | + | chr4_2:59276971-59276990 | None:intergenic | 45.0% | |
| CTCAAATCTGTATCCCCACT+TGG | - | chr4_2:59277363-59277382 | Msa0611160:intron | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | - | chr4_2:59277394-59277413 | Msa0611160:intron | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4_2:59277412-59277431 | Msa0611160:intron | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4_2:59277413-59277432 | Msa0611160:intron | 45.0% | |
| TTACCTCCACCACAACATGT+AGG | - | chr4_2:59277516-59277535 | Msa0611160:intron | 45.0% | |
| AAACCTACATGTTGTGGTGG+AGG | + | chr4_2:59277522-59277541 | None:intergenic | 45.0% | |
| CAGGCAAAACAAGCTTCACA+TGG | - | chr4_2:59277854-59277873 | Msa0611160:CDS | 45.0% | |
| GAGTTTGGGAGATCATCCCA+TGG | + | chr4_2:59275785-59275804 | None:intergenic | 50.0% | |
| AGCAAGAAGAGAAATCGGGG+TGG | - | chr4_2:59275893-59275912 | Msa0611160:intron | 50.0% | |
| GCAAGAAGAGAAATCGGGGT+GGG | - | chr4_2:59275894-59275913 | Msa0611160:intron | 50.0% | |
| CAAGAAGAGAAATCGGGGTG+GGG | - | chr4_2:59275895-59275914 | Msa0611160:intron | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | + | chr4_2:59276051-59276070 | None:intergenic | 50.0% | |
| CTTACTTCAGGACCGAACTG+AGG | + | chr4_2:59276606-59276625 | None:intergenic | 50.0% | |
| CTTCACTGCTGCATCCACAA+TGG | + | chr4_2:59277286-59277305 | None:intergenic | 50.0% | |
| AGATGACTCACTCCCAAGTG+GGG | + | chr4_2:59277379-59277398 | None:intergenic | 50.0% | |
| CAGATGACTCACTCCCAAGT+GGG | + | chr4_2:59277380-59277399 | None:intergenic | 50.0% | |
| ACAGATGACTCACTCCCAAG+TGG | + | chr4_2:59277381-59277400 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4_2:59277624-59277643 | None:intergenic | 50.0% | |
| ! | GACCACAATTGCTTTGGTGC+TGG | - | chr4_2:59277632-59277651 | Msa0611160:CDS | 50.0% |
| CTCCAGCACCAAAGCAATTG+TGG | + | chr4_2:59277637-59277656 | None:intergenic | 50.0% | |
| TTCACATGGCGCAAACTCGA+TGG | - | chr4_2:59277868-59277887 | Msa0611160:CDS | 50.0% | |
| GAGTTTGGGAGATCATCCCA+TGG | + | chr4_2:59275785-59275804 | None:intergenic | 50.0% | |
| AGCAAGAAGAGAAATCGGGG+TGG | - | chr4_2:59275893-59275912 | Msa0611160:intron | 50.0% | |
| GCAAGAAGAGAAATCGGGGT+GGG | - | chr4_2:59275894-59275913 | Msa0611160:intron | 50.0% | |
| CAAGAAGAGAAATCGGGGTG+GGG | - | chr4_2:59275895-59275914 | Msa0611160:intron | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | + | chr4_2:59276051-59276070 | None:intergenic | 50.0% | |
| CTTACTTCAGGACCGAACTG+AGG | + | chr4_2:59276606-59276625 | None:intergenic | 50.0% | |
| CTTCACTGCTGCATCCACAA+TGG | + | chr4_2:59277286-59277305 | None:intergenic | 50.0% | |
| AGATGACTCACTCCCAAGTG+GGG | + | chr4_2:59277379-59277398 | None:intergenic | 50.0% | |
| CAGATGACTCACTCCCAAGT+GGG | + | chr4_2:59277380-59277399 | None:intergenic | 50.0% | |
| ACAGATGACTCACTCCCAAG+TGG | + | chr4_2:59277381-59277400 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4_2:59277624-59277643 | None:intergenic | 50.0% | |
| ! | GACCACAATTGCTTTGGTGC+TGG | - | chr4_2:59277632-59277651 | Msa0611160:CDS | 50.0% |
| CTCCAGCACCAAAGCAATTG+TGG | + | chr4_2:59277637-59277656 | None:intergenic | 50.0% | |
| TTCACATGGCGCAAACTCGA+TGG | - | chr4_2:59277868-59277887 | Msa0611160:CDS | 50.0% | |
| ACGGGCCAGATCCCTATCTA+TGG | + | chr4_2:59276482-59276501 | None:intergenic | 55.0% | |
| ACATGGCGCAAACTCGATGG+AGG | - | chr4_2:59277871-59277890 | Msa0611160:CDS | 55.0% | |
| ACGGGCCAGATCCCTATCTA+TGG | + | chr4_2:59276482-59276501 | None:intergenic | 55.0% | |
| ACATGGCGCAAACTCGATGG+AGG | - | chr4_2:59277871-59277890 | Msa0611160:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 59275722 | 59277940 | 59275722 | ID=Msa0611160;Name=Msa0611160 |
| chr4_2 | mRNA | 59275722 | 59277940 | 59275722 | ID=Msa0611160-mRNA-1;Parent=Msa0611160;Name=Msa0611160-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|301 |
| chr4_2 | exon | 59277581 | 59277940 | 59277581 | ID=Msa0611160-mRNA-1:exon:15685;Parent=Msa0611160-mRNA-1 |
| chr4_2 | exon | 59275931 | 59276392 | 59275931 | ID=Msa0611160-mRNA-1:exon:15684;Parent=Msa0611160-mRNA-1 |
| chr4_2 | exon | 59275722 | 59275805 | 59275722 | ID=Msa0611160-mRNA-1:exon:15683;Parent=Msa0611160-mRNA-1 |
| chr4_2 | CDS | 59277581 | 59277940 | 59277581 | ID=Msa0611160-mRNA-1:cds;Parent=Msa0611160-mRNA-1 |
| chr4_2 | CDS | 59275931 | 59276392 | 59275931 | ID=Msa0611160-mRNA-1:cds;Parent=Msa0611160-mRNA-1 |
| chr4_2 | CDS | 59275722 | 59275805 | 59275722 | ID=Msa0611160-mRNA-1:cds;Parent=Msa0611160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
