Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611260 | XP_003607938.1 | 91.475 | 305 | 22 | 2 | 1 | 301 | 1 | 305 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611260 | sp|Q9FXA3|BH095_ARATH | 43.056 | 216 | 85 | 5 | 88 | 275 | 70 | 275 | 9.02e-41 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0611260 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611260 | MtrunA17_Chr4g0044621 | 91.475 | 305 | 22 | 2 | 1 | 301 | 1 | 305 | 0.0 | 523 |
| Msa0611260 | MtrunA17_Chr4g0044611 | 88.889 | 279 | 26 | 3 | 1 | 275 | 1 | 278 | 6.24e-165 | 460 |
| Msa0611260 | MtrunA17_Chr4g0042511 | 43.841 | 276 | 121 | 6 | 1 | 275 | 1 | 243 | 1.01e-50 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611260 | AT1G49770.1 | 43.056 | 216 | 85 | 5 | 88 | 275 | 70 | 275 | 9.17e-42 | 146 |
Find 61 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTGATTCCTTCTTTC+TGG | 0.014189 | 4_2:-59392175 | None:intergenic |
| GCTTCCTGAACTTCCTTCTA+AGG | 0.247562 | 4_2:+59392379 | Msa0611260:CDS |
| CCTAAGTTATGATTAGAGTT+TGG | 0.258500 | 4_2:-59392116 | None:intergenic |
| GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4_2:-59393740 | None:intergenic |
| TGGAAACTTCTACATGATTA+TGG | 0.312756 | 4_2:+59394023 | Msa0611260:CDS |
| CTAAGTTATGATTAGAGTTT+GGG | 0.313394 | 4_2:-59392115 | None:intergenic |
| AAATGAATTTATACCTTAGA+AGG | 0.315805 | 4_2:-59392392 | None:intergenic |
| ATTCCTTCTTTCTGGTTCAA+TGG | 0.328467 | 4_2:-59392167 | None:intergenic |
| ATGTTCAAACAAATTTCATT+TGG | 0.345668 | 4_2:+59392069 | Msa0611260:CDS |
| TGTTCAAACAAATTTCATTT+GGG | 0.373120 | 4_2:+59392070 | Msa0611260:CDS |
| TATACCTTAGAAGGAAGTTC+AGG | 0.398193 | 4_2:-59392383 | None:intergenic |
| TCTCTTGACCACAATTGCTT+TGG | 0.400979 | 4_2:+59393945 | Msa0611260:CDS |
| GACCACAATTGCTTTGGTGC+TGG | 0.421423 | 4_2:+59393951 | Msa0611260:CDS |
| CCGATTTCTCTTCTTGCTCA+CGG | 0.425778 | 4_2:-59392207 | None:intergenic |
| CCGTGAGCAAGAAGAGAAAT+CGG | 0.430632 | 4_2:+59392207 | Msa0611260:CDS |
| CGATTTCTCTTCTTGCTCAC+GGG | 0.436559 | 4_2:-59392206 | None:intergenic |
| AACATTATGTGCAATGCAAA+TGG | 0.441341 | 4_2:+59394003 | Msa0611260:CDS |
| AGTGAGAATAATATTGCAAC+TGG | 0.447083 | 4_2:+59392248 | Msa0611260:CDS |
| CTCAAATCTGTATCCCCACT+TGG | 0.456632 | 4_2:+59393682 | Msa0611260:CDS |
| GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4_2:+59392330 | Msa0611260:CDS |
| CGTGAGCAAGAAGAGAAATC+GGG | 0.482173 | 4_2:+59392208 | Msa0611260:CDS |
| AGGTGAGAGTAGCAAACAAT+TGG | 0.494891 | 4_2:+59392136 | Msa0611260:CDS |
| CTCCAGCACCAAAGCAATTG+TGG | 0.505022 | 4_2:-59393953 | None:intergenic |
| ATTTGCATTGCACATAATGT+TGG | 0.516349 | 4_2:-59394001 | None:intergenic |
| CCAAACTCTAATCATAACTT+AGG | 0.519326 | 4_2:+59392116 | Msa0611260:CDS |
| AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4_2:-59393739 | None:intergenic |
| TCATTTGGGAAAATCATCCA+TGG | 0.525272 | 4_2:+59392084 | Msa0611260:CDS |
| CAGAAAGAAGGAATCAATGA+AGG | 0.527899 | 4_2:+59392176 | Msa0611260:CDS |
| CAAGTTATTATTATAACTTG+TGG | 0.529171 | 4_2:-59393779 | None:intergenic |
| AAACCTACATGTTGTGGTGG+AGG | 0.530627 | 4_2:-59393838 | None:intergenic |
| AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4_2:+59393731 | Msa0611260:CDS |
| CATTTGGGAAAATCATCCAT+GGG | 0.537456 | 4_2:+59392085 | Msa0611260:CDS |
| ATTTGTGCAACTAAGAAGCC+TGG | 0.543272 | 4_2:+59393922 | Msa0611260:CDS |
| CAGGCAAAACAAGCTTCACA+TGG | 0.544546 | 4_2:+59394173 | Msa0611260:intron |
| CAAGAAGAGAAATCGGGGTG+GGG | 0.550377 | 4_2:+59392214 | Msa0611260:CDS |
| GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4_2:+59393754 | Msa0611260:CDS |
| GTTCAGGAAGCAAGGCATGA+AGG | 0.554482 | 4_2:-59392367 | None:intergenic |
| AGAAGGAAGTTCAGGAAGCA+AGG | 0.555351 | 4_2:-59392375 | None:intergenic |
| ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4_2:+59392315 | Msa0611260:CDS |
| AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4_2:+59392164 | Msa0611260:CDS |
| GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4_2:-59393940 | None:intergenic |
| GCAAGAAGAGAAATCGGGGT+GGG | 0.581863 | 4_2:+59392213 | Msa0611260:CDS |
| TTGATCATGATCTACACTCA+TGG | 0.585566 | 4_2:-59392045 | None:intergenic |
| TTCACATGGCGCAAACTCGA+TGG | 0.594689 | 4_2:+59394187 | Msa0611260:CDS |
| TTACCTCCACCACAACATGT+AGG | 0.611747 | 4_2:+59393835 | Msa0611260:CDS |
| CTTCACTGCTGCATCCACAA+TGG | 0.612064 | 4_2:-59393602 | None:intergenic |
| GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4_2:+59393732 | Msa0611260:CDS |
| CAGATGACTCACTCCCAAGT+GGG | 0.617234 | 4_2:-59393696 | None:intergenic |
| TCAAATCTGTATCCCCACTT+GGG | 0.618216 | 4_2:+59393683 | Msa0611260:CDS |
| GGCTGATAAATCAACCATTG+TGG | 0.629857 | 4_2:+59393588 | Msa0611260:intron |
| ACATGGCGCAAACTCGATGG+AGG | 0.652836 | 4_2:+59394190 | Msa0611260:CDS |
| TTAAAACCTACATGTTGTGG+TGG | 0.654855 | 4_2:-59393841 | None:intergenic |
| AATGTTGTACTGAACATATG+TGG | 0.655921 | 4_2:+59393880 | Msa0611260:CDS |
| CAGCTTTAGAAGTTATGACG+CGG | 0.659283 | 4_2:+59394228 | Msa0611260:CDS |
| GAGTTTGGGAGATCATCCCA+TGG | 0.666665 | 4_2:-59392101 | None:intergenic |
| ACAGATGACTCACTCCCAAG+TGG | 0.673465 | 4_2:-59393697 | None:intergenic |
| AGATGACTCACTCCCAAGTG+GGG | 0.684740 | 4_2:-59393695 | None:intergenic |
| GTGAGCAAGAAGAGAAATCG+GGG | 0.694598 | 4_2:+59392209 | Msa0611260:CDS |
| AGCAAGAAGAGAAATCGGGG+TGG | 0.706863 | 4_2:+59392212 | Msa0611260:CDS |
| GTTGTACTGAACATATGTGG+TGG | 0.767818 | 4_2:+59393883 | Msa0611260:CDS |
| CATCTGTGATCAACTCACAG+TGG | 0.777919 | 4_2:+59393713 | Msa0611260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTTGATAAACTTTAA+GGG | - | chr4_2:59392498-59392517 | None:intergenic | 15.0% |
| !!! | TATGATTTTGATAAACTTTA+AGG | - | chr4_2:59392499-59392518 | None:intergenic | 15.0% |
| !! | ATTAATTAGTTCAATAATCA+AGG | - | chr4_2:59392874-59392893 | None:intergenic | 15.0% |
| !!! | TTGATAGTATTCATTTATTT+AGG | + | chr4_2:59393248-59393267 | Msa0611260:intron | 15.0% |
| !! | TGATAGTATTCATTTATTTA+GGG | + | chr4_2:59393249-59393268 | Msa0611260:intron | 15.0% |
| !!! | ACTGAAATAAATAATTTTCT+TGG | + | chr4_2:59393451-59393470 | Msa0611260:intron | 15.0% |
| !!! | ATTTGATTTTGATATTTTAC+AGG | + | chr4_2:59393567-59393586 | Msa0611260:intron | 15.0% |
| !! | TAAAAATCTTGAAGAAATTA+AGG | + | chr4_2:59393630-59393649 | Msa0611260:CDS | 15.0% |
| !! | GATATTAAAAAATGATAAAG+AGG | - | chr4_2:59394074-59394093 | None:intergenic | 15.0% |
| !!! | ATGATTTTGATAAACTTTAA+GGG | - | chr4_2:59392498-59392517 | None:intergenic | 15.0% |
| !!! | TATGATTTTGATAAACTTTA+AGG | - | chr4_2:59392499-59392518 | None:intergenic | 15.0% |
| !! | ATTAATTAGTTCAATAATCA+AGG | - | chr4_2:59392874-59392893 | None:intergenic | 15.0% |
| !!! | TTGATAGTATTCATTTATTT+AGG | + | chr4_2:59393248-59393267 | Msa0611260:intron | 15.0% |
| !! | TGATAGTATTCATTTATTTA+GGG | + | chr4_2:59393249-59393268 | Msa0611260:intron | 15.0% |
| !!! | ACTGAAATAAATAATTTTCT+TGG | + | chr4_2:59393451-59393470 | Msa0611260:intron | 15.0% |
| !!! | ATTTGATTTTGATATTTTAC+AGG | + | chr4_2:59393567-59393586 | Msa0611260:intron | 15.0% |
| !! | TAAAAATCTTGAAGAAATTA+AGG | + | chr4_2:59393630-59393649 | Msa0611260:CDS | 15.0% |
| !! | GATATTAAAAAATGATAAAG+AGG | - | chr4_2:59394074-59394093 | None:intergenic | 15.0% |
| !! | ATGTTCAAACAAATTTCATT+TGG | + | chr4_2:59392069-59392088 | Msa0611260:CDS | 20.0% |
| !! | TGTTCAAACAAATTTCATTT+GGG | + | chr4_2:59392070-59392089 | Msa0611260:CDS | 20.0% |
| !! | AAATGAATTTATACCTTAGA+AGG | - | chr4_2:59392395-59392414 | None:intergenic | 20.0% |
| !!! | TGATTTTGATAAACTTTAAG+GGG | - | chr4_2:59392497-59392516 | None:intergenic | 20.0% |
| !! | GCAAATACAAAAATGTATTT+AGG | + | chr4_2:59392560-59392579 | Msa0611260:intron | 20.0% |
| !! | AGTGAACACAATAAAAAAAA+TGG | + | chr4_2:59393171-59393190 | Msa0611260:intron | 20.0% |
| !!! | GAAATAAATAATTTTCTTGG+AGG | + | chr4_2:59393454-59393473 | Msa0611260:intron | 20.0% |
| !! | CTACAATTACTTATTTACTA+AGG | + | chr4_2:59393534-59393553 | Msa0611260:intron | 20.0% |
| !! | CAAGTTATTATTATAACTTG+TGG | - | chr4_2:59393782-59393801 | None:intergenic | 20.0% |
| !! | ATGTTCAAACAAATTTCATT+TGG | + | chr4_2:59392069-59392088 | Msa0611260:CDS | 20.0% |
| !! | TGTTCAAACAAATTTCATTT+GGG | + | chr4_2:59392070-59392089 | Msa0611260:CDS | 20.0% |
| !! | AAATGAATTTATACCTTAGA+AGG | - | chr4_2:59392395-59392414 | None:intergenic | 20.0% |
| !!! | TGATTTTGATAAACTTTAAG+GGG | - | chr4_2:59392497-59392516 | None:intergenic | 20.0% |
| !! | GCAAATACAAAAATGTATTT+AGG | + | chr4_2:59392560-59392579 | Msa0611260:intron | 20.0% |
| !! | AGTGAACACAATAAAAAAAA+TGG | + | chr4_2:59393171-59393190 | Msa0611260:intron | 20.0% |
| !!! | GAAATAAATAATTTTCTTGG+AGG | + | chr4_2:59393454-59393473 | Msa0611260:intron | 20.0% |
| !! | CTACAATTACTTATTTACTA+AGG | + | chr4_2:59393534-59393553 | Msa0611260:intron | 20.0% |
| !! | CAAGTTATTATTATAACTTG+TGG | - | chr4_2:59393782-59393801 | None:intergenic | 20.0% |
| ! | CTAAGTTATGATTAGAGTTT+GGG | - | chr4_2:59392118-59392137 | None:intergenic | 25.0% |
| !! | TTTCTATATCTTTTCCGATT+TGG | + | chr4_2:59392538-59392557 | Msa0611260:intron | 25.0% |
| !! | CATTTTTGTATTTGCCAAAT+CGG | - | chr4_2:59392555-59392574 | None:intergenic | 25.0% |
| ! | GGTAAAATTATACTTACTTC+AGG | - | chr4_2:59392937-59392956 | None:intergenic | 25.0% |
| ! | TCATATTGTAACTCAATTGT+TGG | - | chr4_2:59393086-59393105 | None:intergenic | 25.0% |
| ! | CAATTGTCAGTTAAATCTTA+CGG | + | chr4_2:59393122-59393141 | Msa0611260:intron | 25.0% |
| !!! | CTTTTCAAGTGAGAATATAA+TGG | - | chr4_2:59393197-59393216 | None:intergenic | 25.0% |
| !!! | CCATTGACTTAAATTTTCTT+AGG | - | chr4_2:59393398-59393417 | None:intergenic | 25.0% |
| ! | CCTAAGAAAATTTAAGTCAA+TGG | + | chr4_2:59393395-59393414 | Msa0611260:intron | 25.0% |
| ! | AAAATTTAAGTCAATGGCAT+TGG | + | chr4_2:59393401-59393420 | Msa0611260:intron | 25.0% |
| !!! | AACATGTAGGTTTTAAAACA+TGG | + | chr4_2:59393848-59393867 | Msa0611260:CDS | 25.0% |
| ! | CTAAGTTATGATTAGAGTTT+GGG | - | chr4_2:59392118-59392137 | None:intergenic | 25.0% |
| !! | TTTCTATATCTTTTCCGATT+TGG | + | chr4_2:59392538-59392557 | Msa0611260:intron | 25.0% |
| !! | CATTTTTGTATTTGCCAAAT+CGG | - | chr4_2:59392555-59392574 | None:intergenic | 25.0% |
| ! | GGTAAAATTATACTTACTTC+AGG | - | chr4_2:59392937-59392956 | None:intergenic | 25.0% |
| ! | TCATATTGTAACTCAATTGT+TGG | - | chr4_2:59393086-59393105 | None:intergenic | 25.0% |
| ! | CAATTGTCAGTTAAATCTTA+CGG | + | chr4_2:59393122-59393141 | Msa0611260:intron | 25.0% |
| !!! | CTTTTCAAGTGAGAATATAA+TGG | - | chr4_2:59393197-59393216 | None:intergenic | 25.0% |
| !!! | CCATTGACTTAAATTTTCTT+AGG | - | chr4_2:59393398-59393417 | None:intergenic | 25.0% |
| ! | CCTAAGAAAATTTAAGTCAA+TGG | + | chr4_2:59393395-59393414 | Msa0611260:intron | 25.0% |
| ! | AAAATTTAAGTCAATGGCAT+TGG | + | chr4_2:59393401-59393420 | Msa0611260:intron | 25.0% |
| !!! | AACATGTAGGTTTTAAAACA+TGG | + | chr4_2:59393848-59393867 | Msa0611260:CDS | 25.0% |
| CCTAAGTTATGATTAGAGTT+TGG | - | chr4_2:59392119-59392138 | None:intergenic | 30.0% | |
| CCAAACTCTAATCATAACTT+AGG | + | chr4_2:59392116-59392135 | Msa0611260:CDS | 30.0% | |
| AGTGAGAATAATATTGCAAC+TGG | + | chr4_2:59392248-59392267 | Msa0611260:CDS | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | + | chr4_2:59392315-59392334 | Msa0611260:CDS | 30.0% |
| ! | GATAAACTTTAAGGGGAAAA+AGG | - | chr4_2:59392490-59392509 | None:intergenic | 30.0% |
| !!! | TTTTTTTAGCCTGATCAAGA+AGG | - | chr4_2:59392629-59392648 | None:intergenic | 30.0% |
| AAACAACACTCATATAAGCT+AGG | + | chr4_2:59392655-59392674 | Msa0611260:intron | 30.0% | |
| AACAACACTCATATAAGCTA+GGG | + | chr4_2:59392656-59392675 | Msa0611260:intron | 30.0% | |
| TCCAAGTTTGACATTGTATA+CGG | - | chr4_2:59392820-59392839 | None:intergenic | 30.0% | |
| ACCACTTAAGTTCAATTGTT+TGG | + | chr4_2:59393025-59393044 | Msa0611260:intron | 30.0% | |
| ACCAAACAATTGAACTTAAG+TGG | - | chr4_2:59393029-59393048 | None:intergenic | 30.0% | |
| AATAAAGACTTCAAGTCCAT+GGG | - | chr4_2:59393294-59393313 | None:intergenic | 30.0% | |
| AAATAAAGACTTCAAGTCCA+TGG | - | chr4_2:59393295-59393314 | None:intergenic | 30.0% | |
| !!! | GTTTTAAAACCTACATGTTG+TGG | - | chr4_2:59393847-59393866 | None:intergenic | 30.0% |
| AATGTTGTACTGAACATATG+TGG | + | chr4_2:59393880-59393899 | Msa0611260:CDS | 30.0% | |
| ATTTGCATTGCACATAATGT+TGG | - | chr4_2:59394004-59394023 | None:intergenic | 30.0% | |
| AACATTATGTGCAATGCAAA+TGG | + | chr4_2:59394003-59394022 | Msa0611260:CDS | 30.0% | |
| TGGAAACTTCTACATGATTA+TGG | + | chr4_2:59394023-59394042 | Msa0611260:CDS | 30.0% | |
| ! | AGAAGGTTTGAAACTTACAT+GGG | - | chr4_2:59394049-59394068 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | - | chr4_2:59394066-59394085 | None:intergenic | 30.0% | |
| !!! | TTGAATTGTGTTGATTTTGC+AGG | + | chr4_2:59394154-59394173 | Msa0611260:intron | 30.0% |
| CCTAAGTTATGATTAGAGTT+TGG | - | chr4_2:59392119-59392138 | None:intergenic | 30.0% | |
| CCAAACTCTAATCATAACTT+AGG | + | chr4_2:59392116-59392135 | Msa0611260:CDS | 30.0% | |
| AGTGAGAATAATATTGCAAC+TGG | + | chr4_2:59392248-59392267 | Msa0611260:CDS | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | + | chr4_2:59392315-59392334 | Msa0611260:CDS | 30.0% |
| ! | GATAAACTTTAAGGGGAAAA+AGG | - | chr4_2:59392490-59392509 | None:intergenic | 30.0% |
| !!! | TTTTTTTAGCCTGATCAAGA+AGG | - | chr4_2:59392629-59392648 | None:intergenic | 30.0% |
| AAACAACACTCATATAAGCT+AGG | + | chr4_2:59392655-59392674 | Msa0611260:intron | 30.0% | |
| AACAACACTCATATAAGCTA+GGG | + | chr4_2:59392656-59392675 | Msa0611260:intron | 30.0% | |
| TCCAAGTTTGACATTGTATA+CGG | - | chr4_2:59392820-59392839 | None:intergenic | 30.0% | |
| ACCACTTAAGTTCAATTGTT+TGG | + | chr4_2:59393025-59393044 | Msa0611260:intron | 30.0% | |
| ACCAAACAATTGAACTTAAG+TGG | - | chr4_2:59393029-59393048 | None:intergenic | 30.0% | |
| AATAAAGACTTCAAGTCCAT+GGG | - | chr4_2:59393294-59393313 | None:intergenic | 30.0% | |
| AAATAAAGACTTCAAGTCCA+TGG | - | chr4_2:59393295-59393314 | None:intergenic | 30.0% | |
| !!! | GTTTTAAAACCTACATGTTG+TGG | - | chr4_2:59393847-59393866 | None:intergenic | 30.0% |
| AATGTTGTACTGAACATATG+TGG | + | chr4_2:59393880-59393899 | Msa0611260:CDS | 30.0% | |
| ATTTGCATTGCACATAATGT+TGG | - | chr4_2:59394004-59394023 | None:intergenic | 30.0% | |
| AACATTATGTGCAATGCAAA+TGG | + | chr4_2:59394003-59394022 | Msa0611260:CDS | 30.0% | |
| TGGAAACTTCTACATGATTA+TGG | + | chr4_2:59394023-59394042 | Msa0611260:CDS | 30.0% | |
| ! | AGAAGGTTTGAAACTTACAT+GGG | - | chr4_2:59394049-59394068 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | - | chr4_2:59394066-59394085 | None:intergenic | 30.0% | |
| !!! | TTGAATTGTGTTGATTTTGC+AGG | + | chr4_2:59394154-59394173 | Msa0611260:intron | 30.0% |
| TTGATCATGATCTACACTCA+TGG | - | chr4_2:59392048-59392067 | None:intergenic | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | + | chr4_2:59392084-59392103 | Msa0611260:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | + | chr4_2:59392085-59392104 | Msa0611260:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | + | chr4_2:59392164-59392183 | Msa0611260:CDS | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | - | chr4_2:59392170-59392189 | None:intergenic | 35.0% |
| !! | CTTCATTGATTCCTTCTTTC+TGG | - | chr4_2:59392178-59392197 | None:intergenic | 35.0% |
| CAGAAAGAAGGAATCAATGA+AGG | + | chr4_2:59392176-59392195 | Msa0611260:CDS | 35.0% | |
| GAGAAAGGAGAAAGAAAATG+AGG | + | chr4_2:59392330-59392349 | Msa0611260:CDS | 35.0% | |
| TATACCTTAGAAGGAAGTTC+AGG | - | chr4_2:59392386-59392405 | None:intergenic | 35.0% | |
| TTTAAGAACCCTAGCTAGAT+GGG | - | chr4_2:59392731-59392750 | None:intergenic | 35.0% | |
| ATCTAGCTAGGGTTCTTAAA+GGG | + | chr4_2:59392731-59392750 | Msa0611260:intron | 35.0% | |
| TCCTTCTTGTTACCATAGAT+AGG | + | chr4_2:59392786-59392805 | Msa0611260:intron | 35.0% | |
| CCTTCTTGTTACCATAGATA+GGG | + | chr4_2:59392787-59392806 | Msa0611260:intron | 35.0% | |
| CCAAGTTTGACATTGTATAC+GGG | - | chr4_2:59392819-59392838 | None:intergenic | 35.0% | |
| ! | TTTTTGTGTCAACCTCAGTT+CGG | + | chr4_2:59392910-59392929 | Msa0611260:intron | 35.0% |
| TACCAAAAATCGATCCATTC+AGG | + | chr4_2:59392953-59392972 | Msa0611260:intron | 35.0% | |
| !! | TTCCTGAATGGATCGATTTT+TGG | - | chr4_2:59392958-59392977 | None:intergenic | 35.0% |
| AAAATCGATCCATTCAGGAA+TGG | + | chr4_2:59392958-59392977 | Msa0611260:intron | 35.0% | |
| GTGGTTAATGAATTCCACAA+AGG | - | chr4_2:59393010-59393029 | None:intergenic | 35.0% | |
| TCAGTTAAATCTTACGGTTG+AGG | + | chr4_2:59393128-59393147 | Msa0611260:intron | 35.0% | |
| ! | ATTTAAGTCAATGGCATTGG+TGG | + | chr4_2:59393404-59393423 | Msa0611260:intron | 35.0% |
| AATGCTTCCCTTGATTCATA+GGG | - | chr4_2:59393742-59393761 | None:intergenic | 35.0% | |
| TTAAAACCTACATGTTGTGG+TGG | - | chr4_2:59393844-59393863 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | - | chr4_2:59394050-59394069 | None:intergenic | 35.0% |
| TTGATCATGATCTACACTCA+TGG | - | chr4_2:59392048-59392067 | None:intergenic | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | + | chr4_2:59392084-59392103 | Msa0611260:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | + | chr4_2:59392085-59392104 | Msa0611260:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | + | chr4_2:59392164-59392183 | Msa0611260:CDS | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | - | chr4_2:59392170-59392189 | None:intergenic | 35.0% |
| !! | CTTCATTGATTCCTTCTTTC+TGG | - | chr4_2:59392178-59392197 | None:intergenic | 35.0% |
| CAGAAAGAAGGAATCAATGA+AGG | + | chr4_2:59392176-59392195 | Msa0611260:CDS | 35.0% | |
| GAGAAAGGAGAAAGAAAATG+AGG | + | chr4_2:59392330-59392349 | Msa0611260:CDS | 35.0% | |
| TATACCTTAGAAGGAAGTTC+AGG | - | chr4_2:59392386-59392405 | None:intergenic | 35.0% | |
| TTTAAGAACCCTAGCTAGAT+GGG | - | chr4_2:59392731-59392750 | None:intergenic | 35.0% | |
| ATCTAGCTAGGGTTCTTAAA+GGG | + | chr4_2:59392731-59392750 | Msa0611260:intron | 35.0% | |
| TCCTTCTTGTTACCATAGAT+AGG | + | chr4_2:59392786-59392805 | Msa0611260:intron | 35.0% | |
| CCTTCTTGTTACCATAGATA+GGG | + | chr4_2:59392787-59392806 | Msa0611260:intron | 35.0% | |
| CCAAGTTTGACATTGTATAC+GGG | - | chr4_2:59392819-59392838 | None:intergenic | 35.0% | |
| ! | TTTTTGTGTCAACCTCAGTT+CGG | + | chr4_2:59392910-59392929 | Msa0611260:intron | 35.0% |
| TACCAAAAATCGATCCATTC+AGG | + | chr4_2:59392953-59392972 | Msa0611260:intron | 35.0% | |
| !! | TTCCTGAATGGATCGATTTT+TGG | - | chr4_2:59392958-59392977 | None:intergenic | 35.0% |
| AAAATCGATCCATTCAGGAA+TGG | + | chr4_2:59392958-59392977 | Msa0611260:intron | 35.0% | |
| GTGGTTAATGAATTCCACAA+AGG | - | chr4_2:59393010-59393029 | None:intergenic | 35.0% | |
| TCAGTTAAATCTTACGGTTG+AGG | + | chr4_2:59393128-59393147 | Msa0611260:intron | 35.0% | |
| ! | ATTTAAGTCAATGGCATTGG+TGG | + | chr4_2:59393404-59393423 | Msa0611260:intron | 35.0% |
| AATGCTTCCCTTGATTCATA+GGG | - | chr4_2:59393742-59393761 | None:intergenic | 35.0% | |
| TTAAAACCTACATGTTGTGG+TGG | - | chr4_2:59393844-59393863 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | - | chr4_2:59394050-59394069 | None:intergenic | 35.0% |
| AGGTGAGAGTAGCAAACAAT+TGG | + | chr4_2:59392136-59392155 | Msa0611260:CDS | 40.0% | |
| GAACTTTCTCCTTCTTGATC+AGG | + | chr4_2:59392617-59392636 | Msa0611260:intron | 40.0% | |
| TTAAGAACCCTAGCTAGATG+GGG | - | chr4_2:59392730-59392749 | None:intergenic | 40.0% | |
| ! | CTTTAAGAACCCTAGCTAGA+TGG | - | chr4_2:59392732-59392751 | None:intergenic | 40.0% |
| CATCTAGCTAGGGTTCTTAA+AGG | + | chr4_2:59392730-59392749 | Msa0611260:intron | 40.0% | |
| TCTAGCTAGGGTTCTTAAAG+GGG | + | chr4_2:59392732-59392751 | Msa0611260:intron | 40.0% | |
| AAAGGGGCAATAGATCTACT+AGG | + | chr4_2:59392748-59392767 | Msa0611260:intron | 40.0% | |
| AAGGGGCAATAGATCTACTA+GGG | + | chr4_2:59392749-59392768 | Msa0611260:intron | 40.0% | |
| CCCTATCTATGGTAACAAGA+AGG | - | chr4_2:59392790-59392809 | None:intergenic | 40.0% | |
| TGTTACCATAGATAGGGATC+TGG | + | chr4_2:59392793-59392812 | Msa0611260:intron | 40.0% | |
| CCCGTATACAATGTCAAACT+TGG | + | chr4_2:59392816-59392835 | Msa0611260:intron | 40.0% | |
| TCCATTCAGGAATGGAATTC+AGG | + | chr4_2:59392966-59392985 | Msa0611260:intron | 40.0% | |
| ACCTGAATTCCATTCCTGAA+TGG | - | chr4_2:59392970-59392989 | None:intergenic | 40.0% | |
| TGAATTCCACAAAGGACGAA+TGG | - | chr4_2:59393002-59393021 | None:intergenic | 40.0% | |
| GGCTGATAAATCAACCATTG+TGG | + | chr4_2:59393588-59393607 | Msa0611260:intron | 40.0% | |
| TCAAATCTGTATCCCCACTT+GGG | + | chr4_2:59393683-59393702 | Msa0611260:CDS | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | - | chr4_2:59393743-59393762 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | + | chr4_2:59393754-59393773 | Msa0611260:CDS | 40.0% |
| GTTGTACTGAACATATGTGG+TGG | + | chr4_2:59393883-59393902 | Msa0611260:CDS | 40.0% | |
| ATTTGTGCAACTAAGAAGCC+TGG | + | chr4_2:59393922-59393941 | Msa0611260:CDS | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | + | chr4_2:59393945-59393964 | Msa0611260:CDS | 40.0% | |
| !! | CAGCTTTAGAAGTTATGACG+CGG | + | chr4_2:59394228-59394247 | Msa0611260:CDS | 40.0% |
| AGGTGAGAGTAGCAAACAAT+TGG | + | chr4_2:59392136-59392155 | Msa0611260:CDS | 40.0% | |
| GAACTTTCTCCTTCTTGATC+AGG | + | chr4_2:59392617-59392636 | Msa0611260:intron | 40.0% | |
| TTAAGAACCCTAGCTAGATG+GGG | - | chr4_2:59392730-59392749 | None:intergenic | 40.0% | |
| ! | CTTTAAGAACCCTAGCTAGA+TGG | - | chr4_2:59392732-59392751 | None:intergenic | 40.0% |
| CATCTAGCTAGGGTTCTTAA+AGG | + | chr4_2:59392730-59392749 | Msa0611260:intron | 40.0% | |
| TCTAGCTAGGGTTCTTAAAG+GGG | + | chr4_2:59392732-59392751 | Msa0611260:intron | 40.0% | |
| AAAGGGGCAATAGATCTACT+AGG | + | chr4_2:59392748-59392767 | Msa0611260:intron | 40.0% | |
| AAGGGGCAATAGATCTACTA+GGG | + | chr4_2:59392749-59392768 | Msa0611260:intron | 40.0% | |
| CCCTATCTATGGTAACAAGA+AGG | - | chr4_2:59392790-59392809 | None:intergenic | 40.0% | |
| TGTTACCATAGATAGGGATC+TGG | + | chr4_2:59392793-59392812 | Msa0611260:intron | 40.0% | |
| CCCGTATACAATGTCAAACT+TGG | + | chr4_2:59392816-59392835 | Msa0611260:intron | 40.0% | |
| TCCATTCAGGAATGGAATTC+AGG | + | chr4_2:59392966-59392985 | Msa0611260:intron | 40.0% | |
| ACCTGAATTCCATTCCTGAA+TGG | - | chr4_2:59392970-59392989 | None:intergenic | 40.0% | |
| TGAATTCCACAAAGGACGAA+TGG | - | chr4_2:59393002-59393021 | None:intergenic | 40.0% | |
| GGCTGATAAATCAACCATTG+TGG | + | chr4_2:59393588-59393607 | Msa0611260:intron | 40.0% | |
| TCAAATCTGTATCCCCACTT+GGG | + | chr4_2:59393683-59393702 | Msa0611260:CDS | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | - | chr4_2:59393743-59393762 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | + | chr4_2:59393754-59393773 | Msa0611260:CDS | 40.0% |
| GTTGTACTGAACATATGTGG+TGG | + | chr4_2:59393883-59393902 | Msa0611260:CDS | 40.0% | |
| ATTTGTGCAACTAAGAAGCC+TGG | + | chr4_2:59393922-59393941 | Msa0611260:CDS | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | + | chr4_2:59393945-59393964 | Msa0611260:CDS | 40.0% | |
| !! | CAGCTTTAGAAGTTATGACG+CGG | + | chr4_2:59394228-59394247 | Msa0611260:CDS | 40.0% |
| CGATTTCTCTTCTTGCTCAC+GGG | - | chr4_2:59392209-59392228 | None:intergenic | 45.0% | |
| CCGATTTCTCTTCTTGCTCA+CGG | - | chr4_2:59392210-59392229 | None:intergenic | 45.0% | |
| CCGTGAGCAAGAAGAGAAAT+CGG | + | chr4_2:59392207-59392226 | Msa0611260:CDS | 45.0% | |
| CGTGAGCAAGAAGAGAAATC+GGG | + | chr4_2:59392208-59392227 | Msa0611260:CDS | 45.0% | |
| GTGAGCAAGAAGAGAAATCG+GGG | + | chr4_2:59392209-59392228 | Msa0611260:CDS | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | - | chr4_2:59392378-59392397 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | + | chr4_2:59392379-59392398 | Msa0611260:CDS | 45.0% | |
| ! | TAGCTAGATGGGGGCTTTTA+AGG | - | chr4_2:59392720-59392739 | None:intergenic | 45.0% |
| TTAAAAGCCCCCATCTAGCT+AGG | + | chr4_2:59392719-59392738 | Msa0611260:intron | 45.0% | |
| TAAAAGCCCCCATCTAGCTA+GGG | + | chr4_2:59392720-59392739 | Msa0611260:intron | 45.0% | |
| TAAGAACCCTAGCTAGATGG+GGG | - | chr4_2:59392729-59392748 | None:intergenic | 45.0% | |
| TCTGAACCATTCGTCCTTTG+TGG | + | chr4_2:59392993-59393012 | Msa0611260:intron | 45.0% | |
| ACAGTATTAGAGCCAACCCA+TGG | + | chr4_2:59393275-59393294 | Msa0611260:intron | 45.0% | |
| AAGACTTCAAGTCCATGGGT+TGG | - | chr4_2:59393290-59393309 | None:intergenic | 45.0% | |
| CTCAAATCTGTATCCCCACT+TGG | + | chr4_2:59393682-59393701 | Msa0611260:CDS | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | + | chr4_2:59393713-59393732 | Msa0611260:CDS | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | + | chr4_2:59393731-59393750 | Msa0611260:CDS | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | + | chr4_2:59393732-59393751 | Msa0611260:CDS | 45.0% | |
| TTACCTCCACCACAACATGT+AGG | + | chr4_2:59393835-59393854 | Msa0611260:CDS | 45.0% | |
| AAACCTACATGTTGTGGTGG+AGG | - | chr4_2:59393841-59393860 | None:intergenic | 45.0% | |
| CAGGCAAAACAAGCTTCACA+TGG | + | chr4_2:59394173-59394192 | Msa0611260:intron | 45.0% | |
| CGATTTCTCTTCTTGCTCAC+GGG | - | chr4_2:59392209-59392228 | None:intergenic | 45.0% | |
| CCGATTTCTCTTCTTGCTCA+CGG | - | chr4_2:59392210-59392229 | None:intergenic | 45.0% | |
| CCGTGAGCAAGAAGAGAAAT+CGG | + | chr4_2:59392207-59392226 | Msa0611260:CDS | 45.0% | |
| CGTGAGCAAGAAGAGAAATC+GGG | + | chr4_2:59392208-59392227 | Msa0611260:CDS | 45.0% | |
| GTGAGCAAGAAGAGAAATCG+GGG | + | chr4_2:59392209-59392228 | Msa0611260:CDS | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | - | chr4_2:59392378-59392397 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | + | chr4_2:59392379-59392398 | Msa0611260:CDS | 45.0% | |
| ! | TAGCTAGATGGGGGCTTTTA+AGG | - | chr4_2:59392720-59392739 | None:intergenic | 45.0% |
| TTAAAAGCCCCCATCTAGCT+AGG | + | chr4_2:59392719-59392738 | Msa0611260:intron | 45.0% | |
| TAAAAGCCCCCATCTAGCTA+GGG | + | chr4_2:59392720-59392739 | Msa0611260:intron | 45.0% | |
| TAAGAACCCTAGCTAGATGG+GGG | - | chr4_2:59392729-59392748 | None:intergenic | 45.0% | |
| TCTGAACCATTCGTCCTTTG+TGG | + | chr4_2:59392993-59393012 | Msa0611260:intron | 45.0% | |
| ACAGTATTAGAGCCAACCCA+TGG | + | chr4_2:59393275-59393294 | Msa0611260:intron | 45.0% | |
| AAGACTTCAAGTCCATGGGT+TGG | - | chr4_2:59393290-59393309 | None:intergenic | 45.0% | |
| CTCAAATCTGTATCCCCACT+TGG | + | chr4_2:59393682-59393701 | Msa0611260:CDS | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | + | chr4_2:59393713-59393732 | Msa0611260:CDS | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | + | chr4_2:59393731-59393750 | Msa0611260:CDS | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | + | chr4_2:59393732-59393751 | Msa0611260:CDS | 45.0% | |
| TTACCTCCACCACAACATGT+AGG | + | chr4_2:59393835-59393854 | Msa0611260:CDS | 45.0% | |
| AAACCTACATGTTGTGGTGG+AGG | - | chr4_2:59393841-59393860 | None:intergenic | 45.0% | |
| CAGGCAAAACAAGCTTCACA+TGG | + | chr4_2:59394173-59394192 | Msa0611260:intron | 45.0% | |
| GAGTTTGGGAGATCATCCCA+TGG | - | chr4_2:59392104-59392123 | None:intergenic | 50.0% | |
| AGCAAGAAGAGAAATCGGGG+TGG | + | chr4_2:59392212-59392231 | Msa0611260:CDS | 50.0% | |
| GCAAGAAGAGAAATCGGGGT+GGG | + | chr4_2:59392213-59392232 | Msa0611260:CDS | 50.0% | |
| CAAGAAGAGAAATCGGGGTG+GGG | + | chr4_2:59392214-59392233 | Msa0611260:CDS | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | - | chr4_2:59392370-59392389 | None:intergenic | 50.0% | |
| CTTACTTCAGGACCGAACTG+AGG | - | chr4_2:59392925-59392944 | None:intergenic | 50.0% | |
| CTTCACTGCTGCATCCACAA+TGG | - | chr4_2:59393605-59393624 | None:intergenic | 50.0% | |
| AGATGACTCACTCCCAAGTG+GGG | - | chr4_2:59393698-59393717 | None:intergenic | 50.0% | |
| CAGATGACTCACTCCCAAGT+GGG | - | chr4_2:59393699-59393718 | None:intergenic | 50.0% | |
| ACAGATGACTCACTCCCAAG+TGG | - | chr4_2:59393700-59393719 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | - | chr4_2:59393943-59393962 | None:intergenic | 50.0% | |
| ! | GACCACAATTGCTTTGGTGC+TGG | + | chr4_2:59393951-59393970 | Msa0611260:CDS | 50.0% |
| CTCCAGCACCAAAGCAATTG+TGG | - | chr4_2:59393956-59393975 | None:intergenic | 50.0% | |
| TTCACATGGCGCAAACTCGA+TGG | + | chr4_2:59394187-59394206 | Msa0611260:CDS | 50.0% | |
| GAGTTTGGGAGATCATCCCA+TGG | - | chr4_2:59392104-59392123 | None:intergenic | 50.0% | |
| AGCAAGAAGAGAAATCGGGG+TGG | + | chr4_2:59392212-59392231 | Msa0611260:CDS | 50.0% | |
| GCAAGAAGAGAAATCGGGGT+GGG | + | chr4_2:59392213-59392232 | Msa0611260:CDS | 50.0% | |
| CAAGAAGAGAAATCGGGGTG+GGG | + | chr4_2:59392214-59392233 | Msa0611260:CDS | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | - | chr4_2:59392370-59392389 | None:intergenic | 50.0% | |
| CTTACTTCAGGACCGAACTG+AGG | - | chr4_2:59392925-59392944 | None:intergenic | 50.0% | |
| CTTCACTGCTGCATCCACAA+TGG | - | chr4_2:59393605-59393624 | None:intergenic | 50.0% | |
| AGATGACTCACTCCCAAGTG+GGG | - | chr4_2:59393698-59393717 | None:intergenic | 50.0% | |
| CAGATGACTCACTCCCAAGT+GGG | - | chr4_2:59393699-59393718 | None:intergenic | 50.0% | |
| ACAGATGACTCACTCCCAAG+TGG | - | chr4_2:59393700-59393719 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | - | chr4_2:59393943-59393962 | None:intergenic | 50.0% | |
| ! | GACCACAATTGCTTTGGTGC+TGG | + | chr4_2:59393951-59393970 | Msa0611260:CDS | 50.0% |
| CTCCAGCACCAAAGCAATTG+TGG | - | chr4_2:59393956-59393975 | None:intergenic | 50.0% | |
| TTCACATGGCGCAAACTCGA+TGG | + | chr4_2:59394187-59394206 | Msa0611260:CDS | 50.0% | |
| ACGGGCCAGATCCCTATCTA+TGG | - | chr4_2:59392801-59392820 | None:intergenic | 55.0% | |
| ACATGGCGCAAACTCGATGG+AGG | + | chr4_2:59394190-59394209 | Msa0611260:CDS | 55.0% | |
| ACGGGCCAGATCCCTATCTA+TGG | - | chr4_2:59392801-59392820 | None:intergenic | 55.0% | |
| ACATGGCGCAAACTCGATGG+AGG | + | chr4_2:59394190-59394209 | Msa0611260:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 59392041 | 59394259 | 59392041 | ID=Msa0611260;Name=Msa0611260 |
| chr4_2 | mRNA | 59392041 | 59394259 | 59392041 | ID=Msa0611260-mRNA-1;Parent=Msa0611260;Name=Msa0611260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|301 |
| chr4_2 | exon | 59392041 | 59392400 | 59392041 | ID=Msa0611260-mRNA-1:exon:15751;Parent=Msa0611260-mRNA-1 |
| chr4_2 | exon | 59393589 | 59394050 | 59393589 | ID=Msa0611260-mRNA-1:exon:15752;Parent=Msa0611260-mRNA-1 |
| chr4_2 | exon | 59394176 | 59394259 | 59394176 | ID=Msa0611260-mRNA-1:exon:15753;Parent=Msa0611260-mRNA-1 |
| chr4_2 | CDS | 59392041 | 59392400 | 59392041 | ID=Msa0611260-mRNA-1:cds;Parent=Msa0611260-mRNA-1 |
| chr4_2 | CDS | 59393589 | 59394050 | 59393589 | ID=Msa0611260-mRNA-1:cds;Parent=Msa0611260-mRNA-1 |
| chr4_2 | CDS | 59394176 | 59394259 | 59394176 | ID=Msa0611260-mRNA-1:cds;Parent=Msa0611260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
