AlfalfaGEDB | Msa0611690

M. sativa cultivar zhongmu-4 / Msa0611690

KEGG: -
GO: GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611690	XP_013456887.1	94.286	420	20	2	1	419	1	417	0.0	717

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611690	sp\|Q9ZQ85\|EFM_ARATH	40.533	375	158	10	7	368	5	327	5.40e-63	212

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611690	A0A072UPI8	94.286	420	20	2	1	419	1	417	0.0	717

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TFs/TRs:

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Gene ID	Type	Classification
Msa0611690	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611690	MtrunA17_Chr4g0045361	94.286	420	20	2	1	419	1	417	0.0	717
Msa0611690	MtrunA17_Chr4g0062921	39.788	377	158	14	7	367	5	328	3.18e-65	214
Msa0611690	MtrunA17_Chr1g0198601	35.097	359	143	12	44	371	10	309	5.35e-46	162
Msa0611690	MtrunA17_Chr5g0422621	35.942	345	142	12	41	371	16	295	1.79e-44	158
Msa0611690	MtrunA17_Chr5g0402631	58.993	139	51	3	274	409	211	346	1.47e-43	155
Msa0611690	MtrunA17_Chr1g0175081	47.059	68	36	0	274	341	19	86	2.74e-15	71.2
Msa0611690	MtrunA17_Chr7g0255711	50.746	67	32	1	270	336	84	149	3.15e-15	75.9
Msa0611690	MtrunA17_Chr7g0243081	40.698	86	51	0	245	330	39	124	3.59e-14	73.6
Msa0611690	MtrunA17_Chr2g0288601	50.769	65	32	0	263	327	57	121	4.69e-14	68.9
Msa0611690	MtrunA17_Chr7g0261911	51.471	68	33	0	277	344	262	329	6.65e-14	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611690	AT2G03500.1	40.533	375	158	10	7	368	5	327	5.49e-64	212
Msa0611690	AT4G37180.1	35.027	374	159	10	9	377	12	306	5.19e-49	170
Msa0611690	AT4G37180.2	34.840	376	164	12	9	377	12	313	5.33e-47	165
Msa0611690	AT4G37180.3	35.110	319	137	8	9	327	12	260	1.71e-42	151
Msa0611690	AT1G49560.1	53.797	158	56	6	261	405	172	325	2.85e-37	138
Msa0611690	AT1G68670.1	69.892	93	20	1	274	358	212	304	7.63e-36	135
Msa0611690	AT1G68670.1	35.000	120	62	4	36	139	8	127	1.20e-11	66.2
Msa0611690	AT1G13300.1	70.787	89	21	2	276	359	180	268	5.24e-34	130
Msa0611690	AT1G25550.1	54.622	119	47	2	274	385	206	324	2.53e-33	128
Msa0611690	AT3G25790.1	57.292	96	36	1	281	371	200	295	1.81e-30	120

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Find 130 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCATATTCACAGACA+TGG	0.616407	4_2:+60021759	Msa0611690:CDS
AAAGAGAGCCTATTCCTTAC+AGG	0.270823	4_2:-60020306	None:intergenic
AAAGGTAGCAGTACGGCGTC+TGG	0.473278	4_2:+60021627	Msa0611690:CDS
AAATCTAAACTGAGTTCTGC+AGG	0.491660	4_2:-60019378	None:intergenic
AAATGACCTGATTCTTATCG+TGG	0.563659	4_2:-60021982	None:intergenic
AAGAGAAGGAAGAACCTGTA+AGG	0.506152	4_2:+60020292	Msa0611690:CDS
AAGAGTCTGAGGGAAGGATT+TGG	0.407195	4_2:+60020345	Msa0611690:CDS
AATACATGAATACATAGAAG+AGG	0.594019	4_2:+60021871	Msa0611690:three_prime_UTR
AATGCGTTGCAGAAGCTTGG+AGG	0.554542	4_2:+60020522	Msa0611690:CDS
ACAAATCTCCGGTGCAATTC+CGG	0.337882	4_2:-60020498	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATGTGAAATTAAGGATG+CGG	-	chr4_2:60019108-60019127	None:intergenic	30.0%
TTCTTGTTGAGGAGTTAAAA+GGG	-	chr4_2:60019272-60019291	None:intergenic	30.0%
ATTCTTGTTGAGGAGTTAAA+AGG	-	chr4_2:60019273-60019292	None:intergenic	30.0%
TGATCAATCTCTTTCTTCAA+AGG	-	chr4_2:60019826-60019845	None:intergenic	30.0%
TTGCAACAGTAATCTTAATG+AGG	+	chr4_2:60020095-60020114	Msa0611690:intron	30.0%
TGCAACAGTAATCTTAATGA+GGG	+	chr4_2:60020096-60020115	Msa0611690:intron	30.0%
TACTACTACAAGGTTGAAAA+CGG	-	chr4_2:60020188-60020207	None:intergenic	30.0%
CCATTTCTATTACTACTACA+AGG	-	chr4_2:60020198-60020217	None:intergenic	30.0%
CCTTGTAGTAGTAATAGAAA+TGG	+	chr4_2:60020195-60020214	Msa0611690:CDS	30.0%
TGTAGTAGTAATAGAAATGG+AGG	+	chr4_2:60020198-60020217	Msa0611690:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	60019027	60022466	60019027	ID=Msa0611690;Name=Msa0611690
chr4_2	mRNA	60019027	60022466	60019027	ID=Msa0611690-mRNA-1;Parent=Msa0611690;Name=Msa0611690-mRNA-1;_AED=0.11;_eAED=0.11;_QI=336\|0.75\|0.8\|1\|1\|1\|5\|669\|419
chr4_2	exon	60019027	60019579	60019027	ID=Msa0611690-mRNA-1:exon:16037;Parent=Msa0611690-mRNA-1
chr4_2	exon	60019749	60020026	60019749	ID=Msa0611690-mRNA-1:exon:16038;Parent=Msa0611690-mRNA-1
chr4_2	exon	60020144	60020552	60020144	ID=Msa0611690-mRNA-1:exon:16039;Parent=Msa0611690-mRNA-1
chr4_2	exon	60021133	60021209	60021133	ID=Msa0611690-mRNA-1:exon:16040;Parent=Msa0611690-mRNA-1
chr4_2	exon	60021519	60022466	60021519	ID=Msa0611690-mRNA-1:exon:16041;Parent=Msa0611690-mRNA-1
chr4_2	five_prime_UTR	60019027	60019362	60019027	ID=Msa0611690-mRNA-1:five_prime_utr;Parent=Msa0611690-mRNA-1
chr4_2	CDS	60019363	60019579	60019363	ID=Msa0611690-mRNA-1:cds;Parent=Msa0611690-mRNA-1
chr4_2	CDS	60019749	60020026	60019749	ID=Msa0611690-mRNA-1:cds;Parent=Msa0611690-mRNA-1
chr4_2	CDS	60020144	60020552	60020144	ID=Msa0611690-mRNA-1:cds;Parent=Msa0611690-mRNA-1
chr4_2	CDS	60021133	60021209	60021133	ID=Msa0611690-mRNA-1:cds;Parent=Msa0611690-mRNA-1
chr4_2	CDS	60021519	60021797	60021519	ID=Msa0611690-mRNA-1:cds;Parent=Msa0611690-mRNA-1
chr4_2	three_prime_UTR	60021798	60022466	60021798	ID=Msa0611690-mRNA-1:three_prime_utr;Parent=Msa0611690-mRNA-1

Gene Sequence

>Msa0611690

ATGGGTTGTGTTGTTCCTGCAGAACTCAGTTTAGATTTTAGACCAACTTTCGTTCCCAAAACCATCGCTAATTTCCTCTATCATCTTTCCACAATCCAAACAACCTCCGATAAACTCTCCAAACTCCATGATTTCCTCTCTCGACTCGAAGATGAACTCAATAAGATCGATGCTTTCAAACGTGAACTACCTCTCTCCATGCTCCTCTTAAACGACGCAATTTTGGTTTTGAAGGAGGAATTGGAAAAATGTAGAAGTAAAAATTCTGTGCCAGTTTTGGAAGAGTTTATTCCTTTGAAGAAAGAGATTGATCAGAGTGAAGAGAATAATAATAATGATAGAGACAAGAACAACAACAATGAATGCAGCAAAGATAAGAAGAATTGGATGAGTTCTGTTCAGTTATGGAATAACAACACAACTACTTCTAATAATAATGTCTCTGATCATCATCATAAACATAACAATCATAATCTTAATAAATTAGAAACAAAGAAAAGGGAGGAAGAAGGACAATTTATGACTGCAGCTGAGGACCGTTTTCAACCTTGTAGTAGTAATAGAAATGGAGGAAGTGCTTTTATGCCTTTTTCACCGTATTCTTCTGTTCCTGTGACAACAGTGACATTATCAGCACCTAAAGAAGAGAAGGAAGAACCTGTAAGGAATAGGCTCTCTTTTCTGACTCCTGAGGTGAAGAGTCTGAGGGAAGGATTTGGTTCGAGGGGATCGAGAAACAGTTCTAACAGGGCAGTTTCGTCGTCGTCTCCTCCAACCGTGCAGCCGAGTATGCGTGCTGCGCCGCTTCAGCCGCAGCAGACTTCTAGGAAACAGAGGAGATGCTGGTCACCGGAATTGCACCGGAGATTTGTTAATGCGTTGCAGAAGCTTGGAGGTTCTCAAGCAGCAACTCCAAAGCAAATTAGAGAACTCATGCAAGTTGATGGCCTGACTAATGATGAAGTGAAGAGCCATTTGCAAAAATACCGACTTCATACGCGGAGAGTTCCAGCTGCAAGTGGTACTGATCAGTCTGTTGTAGTTCTTGGAGGTTTATGGATGCCTCAAGAACAATACAACGACTCTTCCAAAGGTAGCAGTACGGCGTCTGGTTCTCCACAGAGTCCACTTCATTTGGCTACAGGATCCCGAGGAGGGACATCACCAACTGAAGGTGATAGCATGGACGATGATGATGAAAAATCTGAGAGTTATAGCTGGAAAAGTCATATTCACAGACATGGAAAAGTTGGTGTATAG

Protein sequence

>Msa0611690

MGCVVPAELSLDFRPTFVPKTIANFLYHLSTIQTTSDKLSKLHDFLSRLEDELNKIDAFKRELPLSMLLLNDAILVLKEELEKCRSKNSVPVLEEFIPLKKEIDQSEENNNNDRDKNNNNECSKDKKNWMSSVQLWNNNTTTSNNNVSDHHHKHNNHNLNKLETKKREEEGQFMTAAEDRFQPCSSNRNGGSAFMPFSPYSSVPVTTVTLSAPKEEKEEPVRNRLSFLTPEVKSLREGFGSRGSRNSSNRAVSSSSPPTVQPSMRAAPLQPQQTSRKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAASGTDQSVVVLGGLWMPQEQYNDSSKGSSTASGSPQSPLHLATGSRGGTSPTEGDSMDDDDEKSESYSWKSHIHRHGKVGV*