AlfalfaGEDB | Msa0612550

M. sativa cultivar zhongmu-4 / Msa0612550

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612550	XP_013457027.1	89.174	351	37	1	1	350	1	351	0.0	663

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612550	sp\|Q2MHE4\|HT1_ARATH	52.597	308	140	3	6	309	49	354	3.18e-118	350

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612550	A0A072UPS7	89.174	351	37	1	1	350	1	351	0.0	663

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612550	MtrunA17_Chr4g0047211	89.174	351	37	1	1	350	1	351	0.0	663
Msa0612550	MtrunA17_Chr4g0047191	88.483	356	35	2	1	350	1	356	0.0	657
Msa0612550	MtrunA17_Chr4g0047201	84.123	359	41	3	3	347	151	507	0.0	627
Msa0612550	MtrunA17_Chr2g0282321	77.982	327	70	2	21	347	144	468	0.0	540
Msa0612550	MtrunA17_Chr4g0075541	50.649	308	146	2	6	309	50	355	1.96e-118	347
Msa0612550	MtrunA17_Chr3g0117731	53.846	286	130	1	29	314	47	330	2.22e-114	336
Msa0612550	MtrunA17_Chr4g0059121	52.347	277	130	1	29	305	48	322	4.51e-112	330
Msa0612550	MtrunA17_Chr3g0090261	48.519	270	137	1	30	299	73	340	4.97e-100	300
Msa0612550	MtrunA17_Chr8g0388891	45.185	270	125	2	30	299	124	370	3.83e-84	260
Msa0612550	MtrunA17_Chr7g0244621	42.336	274	145	4	34	298	40	309	1.59e-78	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612550	AT5G58950.1	67.302	315	102	1	20	334	189	502	5.15e-159	456
Msa0612550	AT3G46930.1	57.000	300	125	2	30	328	157	453	1.44e-121	359
Msa0612550	AT3G46930.2	57.000	300	125	2	30	328	192	488	2.04e-121	360
Msa0612550	AT1G62400.1	52.597	308	140	3	6	309	49	354	3.23e-119	350
Msa0612550	AT2G24360.1	48.188	276	141	1	27	302	118	391	2.31e-95	290
Msa0612550	AT4G31170.7	47.253	273	142	1	30	302	122	392	1.08e-94	288
Msa0612550	AT4G31170.6	47.253	273	142	1	30	302	122	392	1.08e-94	288
Msa0612550	AT4G31170.5	47.253	273	142	1	30	302	122	392	1.08e-94	288
Msa0612550	AT4G31170.1	47.253	273	142	1	30	302	122	392	1.08e-94	288
Msa0612550	AT4G31170.2	47.253	273	142	1	30	302	122	392	1.08e-94	288

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Find 78 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAATCCTACGGGAGAA+AGG	0.477465	4_2:-61002927	Msa0612550:CDS
AAGGTTGATGTCTATAGTTT+TGG	0.266404	4_2:-61002908	Msa0612550:CDS
ACAGCAAAAGCAGCCTGGAC+GGG	0.540529	4_2:+61002833	None:intergenic
ACCGTGCTACAAAACCCTTG+TGG	0.662565	4_2:-61002141	Msa0612550:CDS
ACGACCTTGGTACCTACCGT+TGG	0.545187	4_2:-61002970	Msa0612550:CDS
ACGGGAGTCATATCCTCGTA+TGG	0.616055	4_2:+61002851	None:intergenic
AGCTATGCGAGCTTTAATTG+AGG	0.576634	4_2:-61002262	Msa0612550:CDS
ATAGCTGGTGGGCAGTTTGA+AGG	0.484794	4_2:+61002279	None:intergenic
ATATCTATCAGAAGGTTCAT+TGG	0.457733	4_2:-61003209	Msa0612550:CDS
ATCACAGAATATCTATCAGA+AGG	0.582967	4_2:-61003217	Msa0612550:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTGCTGTCAAAAATATCA+AGG	-	chr4_2:61002220-61002239	Msa0612550:CDS	30.0%
ATTAGAGAAACAATTCGTCA+CGG	-	chr4_2:61002280-61002299	Msa0612550:CDS	30.0%
TTACCTTAAGAACATTTGGA+TGG	+	chr4_2:61002331-61002350	None:intergenic	30.0%
GGAAAAGTCTTTGTCTAATT+AGG	-	chr4_2:61002439-61002458	Msa0612550:intron	30.0%
TAGACCAAAGTATACAACAA+AGG	+	chr4_2:61002482-61002501	None:intergenic	30.0%
GAAATTTACGTTTACAAGGA+AGG	-	chr4_2:61002538-61002557	Msa0612550:intron	30.0%
TCTGTGATAACACAATAAAC+AGG	+	chr4_2:61002632-61002651	None:intergenic	30.0%
ATCACAGAATATCTATCAGA+AGG	-	chr4_2:61002644-61002663	Msa0612550:intron	30.0%
ATATCTATCAGAAGGTTCAT+TGG	-	chr4_2:61002652-61002671	Msa0612550:intron	30.0%
TATCTATCAGAAGGTTCATT+GGG	-	chr4_2:61002653-61002672	Msa0612550:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	61002035	61003848	61002035	ID=Msa0612550;Name=Msa0612550
chr4_2	mRNA	61002035	61003848	61002035	ID=Msa0612550-mRNA-1;Parent=Msa0612550;Name=Msa0612550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|3\|0\|350
chr4_2	exon	61003537	61003848	61003537	ID=Msa0612550-mRNA-1:exon:16539;Parent=Msa0612550-mRNA-1
chr4_2	exon	61002823	61003278	61002823	ID=Msa0612550-mRNA-1:exon:16538;Parent=Msa0612550-mRNA-1
chr4_2	exon	61002035	61002319	61002035	ID=Msa0612550-mRNA-1:exon:16537;Parent=Msa0612550-mRNA-1
chr4_2	CDS	61003537	61003848	61003537	ID=Msa0612550-mRNA-1:cds;Parent=Msa0612550-mRNA-1
chr4_2	CDS	61002823	61003278	61002823	ID=Msa0612550-mRNA-1:cds;Parent=Msa0612550-mRNA-1
chr4_2	CDS	61002035	61002319	61002035	ID=Msa0612550-mRNA-1:cds;Parent=Msa0612550-mRNA-1

Gene Sequence

>Msa0612550

ATGGCAACAACAGTTAAGCACTTTTCATCGATGAGATTCATTGACAAGTCGAAGAACCAAAGGGTTACTGCCGTTGAAACATCTGAGGATGAATGGAATGTTGACCTCTCTAAACTCTTTGTTGGTCATAGGTTTGCTCATGGAGCTCATAGCAGACTTTACCATGGTTTGTATGACAACGAACCTGTTGCTGTCAAAAATATCAAGGTACCAGATGATGATGAAGACGGAACAATGGCTGCTACATTAGAGAAACAATTCGTCACGGAAGTCACGCTTTTATCTCGCCTTCACCATCCAAATGTTCTTAAGTTGGTAGCAGCATGCAGAAAGCCGCCTGTTTATTGTGTTATCACAGAATATCTATCAGAAGGTTCATTGGGGGCATATTTGCATAAGTTGGAGGGGAAAGCCGTTTCTCTACAGAAGCTAATCGCTTTTTCTCTGGATATCGCTCGTGGAATGGAATATATACACTCTCAAGGTGTCATTCATCGAGACCTTAAACCAGATAATGTCCTTATTAATGGTGACTCTCACCTTAAAATTGCCGATTTTGGCATTGCTTGTGAGGAAGCACAATGCGAGTTACTTGCTGACGACCTTGGTACCTACCGTTGGATGGCACCTGAGATGATCAAAAGAAAATCCTACGGGAGAAAGGTTGATGTCTATAGTTTTGGGCTTATGTTATGGGAGATGCTCACCGGTAGAATACCATACGAGGATATGACTCCCGTCCAGGCTGCTTTTGCTGTCGTAAATAAGAATTCAAGGCCTGTTATTCCTTCAAACTGCCCACCAGCTATGCGAGCTTTAATTGAGGAATGTTGGTCCTTGAATCCGGACAAAAGGCCTGAGTTCTGGCAGGTTGTTAAGGTGTTAGAGCAATTTGAATCCTCGCTTGCTCGTGATGGATCATTGACCGTGCTACAAAACCCTTGTGGGCAAGATCATAAAAAAGGGCTTCTTCATTGGATTCACAAGCTTAGTCCTGCACATCATCATAGTAGTGGTTTTGTGGCTAAACCAAAATTTACATGTATATTCTGA

Protein sequence

>Msa0612550

MATTVKHFSSMRFIDKSKNQRVTAVETSEDEWNVDLSKLFVGHRFAHGAHSRLYHGLYDNEPVAVKNIKVPDDDEDGTMAATLEKQFVTEVTLLSRLHHPNVLKLVAACRKPPVYCVITEYLSEGSLGAYLHKLEGKAVSLQKLIAFSLDIARGMEYIHSQGVIHRDLKPDNVLINGDSHLKIADFGIACEEAQCELLADDLGTYRWMAPEMIKRKSYGRKVDVYSFGLMLWEMLTGRIPYEDMTPVQAAFAVVNKNSRPVIPSNCPPAMRALIEECWSLNPDKRPEFWQVVKVLEQFESSLARDGSLTVLQNPCGQDHKKGLLHWIHKLSPAHHHSSGFVAKPKFTCIF*