Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612710 | XP_013457050.1 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 2.19e-147 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612710 | sp|Q338B0|HFA2C_ORYSJ | 38.073 | 218 | 111 | 6 | 2 | 202 | 6 | 216 | 8.37e-38 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612710 | G7ZZ89 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 1.05e-147 | 418 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0612710 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612710 | MtrunA17_Chr4g0047421 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 2.02e-151 | 418 |
| Msa0612710 | MtrunA17_Chr5g0397881 | 38.424 | 203 | 87 | 4 | 30 | 199 | 21 | 218 | 2.08e-40 | 141 |
| Msa0612710 | MtrunA17_Chr7g0257331 | 44.886 | 176 | 76 | 4 | 31 | 199 | 20 | 181 | 2.13e-40 | 137 |
| Msa0612710 | MtrunA17_Chr1g0203601 | 37.073 | 205 | 102 | 4 | 17 | 203 | 4 | 199 | 1.89e-37 | 132 |
| Msa0612710 | MtrunA17_Chr1g0185131 | 41.899 | 179 | 84 | 4 | 31 | 202 | 30 | 195 | 2.62e-36 | 130 |
| Msa0612710 | MtrunA17_Chr5g0441531 | 39.106 | 179 | 96 | 3 | 30 | 200 | 22 | 195 | 5.62e-36 | 127 |
| Msa0612710 | MtrunA17_Chr3g0134031 | 35.814 | 215 | 89 | 3 | 30 | 200 | 21 | 230 | 5.18e-35 | 127 |
| Msa0612710 | MtrunA17_Chr6g0472421 | 55.556 | 99 | 39 | 1 | 31 | 129 | 31 | 124 | 7.77e-35 | 126 |
| Msa0612710 | MtrunA17_Chr6g0467041 | 56.122 | 98 | 38 | 1 | 32 | 129 | 21 | 113 | 1.84e-34 | 124 |
| Msa0612710 | MtrunA17_Chr1g0204741 | 43.293 | 164 | 83 | 3 | 31 | 192 | 38 | 193 | 4.71e-34 | 124 |
| Msa0612710 | MtrunA17_Chr5g0410881 | 55.000 | 100 | 40 | 1 | 30 | 129 | 29 | 123 | 1.48e-33 | 125 |
| Msa0612710 | MtrunA17_Chr5g0402291 | 52.000 | 100 | 43 | 1 | 30 | 129 | 6 | 100 | 1.92e-33 | 121 |
| Msa0612710 | MtrunA17_Chr8g0375041 | 37.500 | 184 | 107 | 3 | 30 | 210 | 6 | 184 | 1.97e-32 | 117 |
| Msa0612710 | MtrunA17_Chr2g0330821 | 40.449 | 178 | 90 | 5 | 31 | 207 | 77 | 239 | 2.64e-32 | 119 |
| Msa0612710 | MtrunA17_Chr7g0260331 | 53.535 | 99 | 41 | 1 | 31 | 129 | 47 | 140 | 4.02e-32 | 119 |
| Msa0612710 | MtrunA17_Chr4g0071051 | 58.163 | 98 | 36 | 2 | 31 | 128 | 99 | 191 | 6.24e-32 | 119 |
| Msa0612710 | MtrunA17_Chr4g0039891 | 55.102 | 98 | 39 | 1 | 33 | 130 | 12 | 104 | 2.53e-31 | 119 |
| Msa0612710 | MtrunA17_Chr8g0378061 | 55.208 | 96 | 38 | 1 | 34 | 129 | 23 | 113 | 5.83e-31 | 118 |
| Msa0612710 | MtrunA17_Chr3g0135831 | 38.953 | 172 | 94 | 4 | 31 | 199 | 44 | 207 | 2.92e-30 | 114 |
| Msa0612710 | MtrunA17_Chr8g0379701 | 39.333 | 150 | 75 | 3 | 33 | 182 | 12 | 145 | 4.09e-30 | 114 |
| Msa0612710 | MtrunA17_Chr2g0284481 | 36.310 | 168 | 93 | 3 | 33 | 200 | 15 | 168 | 1.09e-27 | 107 |
| Msa0612710 | MtrunA17_Chr6g0485571 | 50.000 | 98 | 44 | 1 | 32 | 129 | 10 | 102 | 1.61e-27 | 106 |
| Msa0612710 | MtrunA17_Chr8g0392001 | 40.385 | 156 | 82 | 5 | 32 | 186 | 21 | 166 | 1.01e-26 | 105 |
| Msa0612710 | MtrunA17_Chr1g0179321 | 56.061 | 66 | 24 | 1 | 32 | 97 | 48 | 108 | 1.28e-20 | 83.2 |
| Msa0612710 | MtrunA17_Chr4g0023771 | 52.381 | 63 | 25 | 1 | 33 | 95 | 15 | 72 | 2.58e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612710 | AT5G62020.1 | 35.025 | 197 | 97 | 3 | 30 | 200 | 20 | 211 | 3.98e-37 | 131 |
| Msa0612710 | AT4G36990.1 | 37.264 | 212 | 100 | 5 | 22 | 211 | 3 | 203 | 1.77e-36 | 129 |
| Msa0612710 | AT2G41690.1 | 38.462 | 195 | 99 | 4 | 21 | 199 | 28 | 217 | 1.75e-35 | 125 |
| Msa0612710 | AT4G17750.1 | 56.436 | 101 | 39 | 1 | 30 | 130 | 49 | 144 | 9.42e-35 | 129 |
| Msa0612710 | AT1G46264.1 | 49.153 | 118 | 55 | 1 | 30 | 147 | 31 | 143 | 3.02e-34 | 125 |
| Msa0612710 | AT4G11660.1 | 54.455 | 101 | 41 | 1 | 30 | 130 | 56 | 151 | 1.80e-33 | 123 |
| Msa0612710 | AT4G13980.1 | 38.122 | 181 | 89 | 3 | 34 | 211 | 24 | 184 | 2.79e-33 | 124 |
| Msa0612710 | AT5G03720.2 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 7.71e-33 | 122 |
| Msa0612710 | AT5G03720.1 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 7.71e-33 | 122 |
| Msa0612710 | AT1G32330.2 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 8.38e-33 | 123 |
| Msa0612710 | AT5G43840.1 | 51.351 | 111 | 49 | 1 | 31 | 141 | 17 | 122 | 8.40e-33 | 119 |
| Msa0612710 | AT1G32330.1 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 8.72e-33 | 123 |
| Msa0612710 | AT3G22830.1 | 53.000 | 100 | 42 | 1 | 31 | 130 | 59 | 153 | 1.52e-32 | 121 |
| Msa0612710 | AT3G63350.1 | 55.102 | 98 | 39 | 1 | 31 | 128 | 26 | 118 | 7.46e-32 | 117 |
| Msa0612710 | AT5G16820.1 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 8.32e-32 | 120 |
| Msa0612710 | AT5G16820.2 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 8.32e-32 | 120 |
| Msa0612710 | AT2G26150.1 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 2.14e-31 | 117 |
| Msa0612710 | AT2G26150.4 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 2.14e-31 | 117 |
| Msa0612710 | AT3G51910.1 | 48.276 | 116 | 53 | 3 | 30 | 144 | 26 | 135 | 1.45e-30 | 113 |
| Msa0612710 | AT3G02990.1 | 52.577 | 97 | 41 | 1 | 33 | 129 | 23 | 114 | 7.36e-29 | 112 |
| Msa0612710 | AT3G24520.1 | 46.296 | 108 | 53 | 1 | 32 | 139 | 16 | 118 | 1.38e-28 | 109 |
| Msa0612710 | AT5G54070.1 | 51.546 | 97 | 42 | 1 | 32 | 128 | 70 | 161 | 2.00e-28 | 109 |
| Msa0612710 | AT4G18880.1 | 38.095 | 189 | 95 | 6 | 21 | 204 | 6 | 177 | 1.19e-25 | 102 |
| Msa0612710 | AT5G45710.3 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 5.36e-25 | 100 |
| Msa0612710 | AT5G45710.1 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 5.36e-25 | 100 |
| Msa0612710 | AT1G67970.1 | 46.465 | 99 | 47 | 2 | 32 | 129 | 18 | 111 | 4.55e-24 | 98.2 |
| Msa0612710 | AT4G18870.1 | 38.710 | 93 | 51 | 2 | 33 | 125 | 146 | 232 | 9.17e-15 | 71.6 |
| Msa0612710 | AT4G18870.1 | 34.862 | 109 | 61 | 4 | 28 | 134 | 8 | 108 | 2.17e-12 | 65.1 |
Find 41 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGTCTCCTAACTTTATTT+TGG | 0.243004 | 4_2:-61223830 | None:intergenic |
| TTGTTGTGCTTGAAATATTT+AGG | 0.265731 | 4_2:-61222422 | None:intergenic |
| ACTCTAACCTTTCCTTCTTT+AGG | 0.284218 | 4_2:-61223731 | None:intergenic |
| AATGGTGCAGGGCACCTTAA+TGG | 0.303317 | 4_2:-61222266 | None:intergenic |
| TCTATTGAAGACCTATGATT+TGG | 0.323717 | 4_2:+61222289 | Msa0612710:CDS |
| AGAAATTTCAAAAGGGTTGC+AGG | 0.342009 | 4_2:+61223556 | Msa0612710:CDS |
| GAGTGTCCCTTAAGCCATTA+AGG | 0.355422 | 4_2:+61222252 | Msa0612710:CDS |
| CCAGCATGAGAAATTTCAAA+AGG | 0.385876 | 4_2:+61223548 | Msa0612710:CDS |
| CAGGGCACCTTAATGGCTTA+AGG | 0.389744 | 4_2:-61222259 | None:intergenic |
| AGAAAATATCATCTAAAAGA+TGG | 0.402907 | 4_2:+61223520 | Msa0612710:CDS |
| TCATAGGTCTTCAATAGAAA+TGG | 0.435601 | 4_2:-61222284 | None:intergenic |
| ATAACCGCCAAAATAAAGTT+AGG | 0.439240 | 4_2:+61223823 | Msa0612710:CDS |
| GGCACTTGAAATGAAGTTGT+TGG | 0.448229 | 4_2:+61223779 | Msa0612710:CDS |
| GGAGTGTCTCTCTCAGCATA+TGG | 0.469453 | 4_2:+61223800 | Msa0612710:CDS |
| GAACAAGACTTGAGATATTG+AGG | 0.477443 | 4_2:-61223627 | None:intergenic |
| CAGCATGAGAAATTTCAAAA+GGG | 0.481854 | 4_2:+61223549 | Msa0612710:CDS |
| ATTGAAGACCTATGATTTGG+TGG | 0.487727 | 4_2:+61222292 | Msa0612710:CDS |
| GTCTTCAATAGAAATGGTGC+AGG | 0.494487 | 4_2:-61222278 | None:intergenic |
| ACCTTGTTCCACCAAATCAT+AGG | 0.508730 | 4_2:-61222300 | None:intergenic |
| GAAAATATCATCTAAAAGAT+GGG | 0.510989 | 4_2:+61223521 | Msa0612710:CDS |
| TCATGGAATGAAGAAGGAAA+TGG | 0.522950 | 4_2:+61222356 | Msa0612710:CDS |
| AGGGCACCTTAATGGCTTAA+GGG | 0.526456 | 4_2:-61222258 | None:intergenic |
| AGATATTGAGGAAACACGCT+TGG | 0.529081 | 4_2:-61223615 | None:intergenic |
| TAGCAATCATGAACTACTCA+TGG | 0.534294 | 4_2:+61223695 | Msa0612710:CDS |
| GTGAGCTCTGAGAATTCAGC+TGG | 0.540598 | 4_2:-61222395 | None:intergenic |
| AAAGGGTTGCAGGCATATGT+TGG | 0.543171 | 4_2:+61223566 | Msa0612710:CDS |
| ATTGTGTCATGGAATGAAGA+AGG | 0.551158 | 4_2:+61222350 | Msa0612710:CDS |
| GGAGAACAAGAACCTAAAGA+AGG | 0.568844 | 4_2:+61223719 | Msa0612710:CDS |
| ACCTATGATTTGGTGGAACA+AGG | 0.572095 | 4_2:+61222299 | Msa0612710:CDS |
| GGTAGTGAAGGTGAAGAAGA+TGG | 0.572755 | 4_2:+61222320 | Msa0612710:CDS |
| AATGTGATGGAGCTAAACTT+TGG | 0.582577 | 4_2:+61222197 | Msa0612710:CDS |
| ACAAGAACCTAAAGAAGGAA+AGG | 0.583280 | 4_2:+61223724 | Msa0612710:CDS |
| ATGGCATTAAAATTGTGTCA+TGG | 0.592944 | 4_2:+61222339 | Msa0612710:CDS |
| AATGCAAATAGCTGAATGCA+AGG | 0.596737 | 4_2:+61223758 | Msa0612710:CDS |
| TAACATGAGTGGAAATGTGA+TGG | 0.602953 | 4_2:+61222184 | None:intergenic |
| GTGCTTGAAATATTTAGGCA+AGG | 0.616604 | 4_2:-61222417 | None:intergenic |
| ATATGTTGGTTGAAATCAGT+AGG | 0.621529 | 4_2:+61223580 | Msa0612710:CDS |
| ATATCTCAAGTCTTGTTCAG+AGG | 0.622749 | 4_2:+61223632 | Msa0612710:CDS |
| TTGGTGGAACAAGGTAGTGA+AGG | 0.622819 | 4_2:+61222308 | Msa0612710:CDS |
| TCTTCAATAGAAATGGTGCA+GGG | 0.670077 | 4_2:-61222277 | None:intergenic |
| CAATCATGAACTACTCATGG+AGG | 0.704767 | 4_2:+61223698 | Msa0612710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGACTAATATTTCTTTTTT+AGG | - | chr4_2:61222680-61222699 | None:intergenic | 15.0% |
| !!! | ATGACTAATATTTCTTTTTT+AGG | - | chr4_2:61222680-61222699 | None:intergenic | 15.0% |
| !!! | AAATCTCACTTTATTTTGAA+TGG | + | chr4_2:61222560-61222579 | Msa0612710:intron | 20.0% |
| !! | ATTGTTCTATACTTTCTATT+AGG | - | chr4_2:61222600-61222619 | None:intergenic | 20.0% |
| !!! | TAATATCAACATTCTTTTGA+AGG | - | chr4_2:61222717-61222736 | None:intergenic | 20.0% |
| !!! | ATTGATATATTGATTCATCA+AGG | + | chr4_2:61222756-61222775 | Msa0612710:intron | 20.0% |
| !!! | TTGATATATTGATTCATCAA+GGG | + | chr4_2:61222757-61222776 | Msa0612710:intron | 20.0% |
| !! | AAAAGTTCTTTGAATTACTT+GGG | + | chr4_2:61222856-61222875 | Msa0612710:intron | 20.0% |
| !!! | AAAAGACCAAATTTGAAATT+TGG | + | chr4_2:61222999-61223018 | Msa0612710:intron | 20.0% |
| !! | ACTAATTAATTACTTCAACA+GGG | + | chr4_2:61223492-61223511 | Msa0612710:intron | 20.0% |
| !! | AGAAAATATCATCTAAAAGA+TGG | + | chr4_2:61223520-61223539 | Msa0612710:CDS | 20.0% |
| !! | GAAAATATCATCTAAAAGAT+GGG | + | chr4_2:61223521-61223540 | Msa0612710:CDS | 20.0% |
| !!! | AAATCTCACTTTATTTTGAA+TGG | + | chr4_2:61222560-61222579 | Msa0612710:intron | 20.0% |
| !! | ATTGTTCTATACTTTCTATT+AGG | - | chr4_2:61222600-61222619 | None:intergenic | 20.0% |
| !!! | TAATATCAACATTCTTTTGA+AGG | - | chr4_2:61222717-61222736 | None:intergenic | 20.0% |
| !!! | ATTGATATATTGATTCATCA+AGG | + | chr4_2:61222756-61222775 | Msa0612710:intron | 20.0% |
| !!! | TTGATATATTGATTCATCAA+GGG | + | chr4_2:61222757-61222776 | Msa0612710:intron | 20.0% |
| !! | AAAAGTTCTTTGAATTACTT+GGG | + | chr4_2:61222856-61222875 | Msa0612710:intron | 20.0% |
| !!! | AAAAGACCAAATTTGAAATT+TGG | + | chr4_2:61222999-61223018 | Msa0612710:intron | 20.0% |
| !! | ACTAATTAATTACTTCAACA+GGG | + | chr4_2:61223492-61223511 | Msa0612710:intron | 20.0% |
| !! | AGAAAATATCATCTAAAAGA+TGG | + | chr4_2:61223520-61223539 | Msa0612710:CDS | 20.0% |
| !! | GAAAATATCATCTAAAAGAT+GGG | + | chr4_2:61223521-61223540 | Msa0612710:CDS | 20.0% |
| !!! | CATTTTGATCAGAAGAAAAT+TGG | - | chr4_2:61222232-61222251 | None:intergenic | 25.0% |
| !! | CAATTTTCTTCTGATCAAAA+TGG | + | chr4_2:61222230-61222249 | Msa0612710:CDS | 25.0% |
| ! | TTGTTGTGCTTGAAATATTT+AGG | - | chr4_2:61222425-61222444 | None:intergenic | 25.0% |
| ! | ATAGTTAACCTTCATATTAG+TGG | - | chr4_2:61222637-61222656 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGAAGGAATAAAC+AGG | - | chr4_2:61222707-61222726 | None:intergenic | 25.0% |
| ! | CAGTGAACAAACAAAAAATT+CGG | - | chr4_2:61222811-61222830 | None:intergenic | 25.0% |
| !! | AGTAATTCAAAGAACTTTTG+AGG | - | chr4_2:61222855-61222874 | None:intergenic | 25.0% |
| ! | CAAAAGTTCTTTGAATTACT+TGG | + | chr4_2:61222855-61222874 | Msa0612710:intron | 25.0% |
| ! | AAAGTTCTTTGAATTACTTG+GGG | + | chr4_2:61222857-61222876 | Msa0612710:intron | 25.0% |
| ! | AGTTAGTGACACAAATTATA+AGG | + | chr4_2:61223178-61223197 | Msa0612710:intron | 25.0% |
| ! | TGCTATATTTAACGTTATAC+TGG | + | chr4_2:61223248-61223267 | Msa0612710:intron | 25.0% |
| ! | ATGCATATATTAACACAACA+TGG | + | chr4_2:61223417-61223436 | Msa0612710:intron | 25.0% |
| ! | CACTAATTAATTACTTCAAC+AGG | + | chr4_2:61223491-61223510 | Msa0612710:intron | 25.0% |
| ! | CTAATTAATTACTTCAACAG+GGG | + | chr4_2:61223493-61223512 | Msa0612710:intron | 25.0% |
| !!! | ATAGTCTCCTAACTTTATTT+TGG | - | chr4_2:61223833-61223852 | None:intergenic | 25.0% |
| !!! | CATTTTGATCAGAAGAAAAT+TGG | - | chr4_2:61222232-61222251 | None:intergenic | 25.0% |
| !! | CAATTTTCTTCTGATCAAAA+TGG | + | chr4_2:61222230-61222249 | Msa0612710:CDS | 25.0% |
| ! | TTGTTGTGCTTGAAATATTT+AGG | - | chr4_2:61222425-61222444 | None:intergenic | 25.0% |
| ! | ATAGTTAACCTTCATATTAG+TGG | - | chr4_2:61222637-61222656 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGAAGGAATAAAC+AGG | - | chr4_2:61222707-61222726 | None:intergenic | 25.0% |
| ! | CAGTGAACAAACAAAAAATT+CGG | - | chr4_2:61222811-61222830 | None:intergenic | 25.0% |
| !! | AGTAATTCAAAGAACTTTTG+AGG | - | chr4_2:61222855-61222874 | None:intergenic | 25.0% |
| ! | CAAAAGTTCTTTGAATTACT+TGG | + | chr4_2:61222855-61222874 | Msa0612710:intron | 25.0% |
| ! | AAAGTTCTTTGAATTACTTG+GGG | + | chr4_2:61222857-61222876 | Msa0612710:intron | 25.0% |
| ! | AGTTAGTGACACAAATTATA+AGG | + | chr4_2:61223178-61223197 | Msa0612710:intron | 25.0% |
| ! | TGCTATATTTAACGTTATAC+TGG | + | chr4_2:61223248-61223267 | Msa0612710:intron | 25.0% |
| ! | ATGCATATATTAACACAACA+TGG | + | chr4_2:61223417-61223436 | Msa0612710:intron | 25.0% |
| ! | CACTAATTAATTACTTCAAC+AGG | + | chr4_2:61223491-61223510 | Msa0612710:intron | 25.0% |
| ! | CTAATTAATTACTTCAACAG+GGG | + | chr4_2:61223493-61223512 | Msa0612710:intron | 25.0% |
| !!! | ATAGTCTCCTAACTTTATTT+TGG | - | chr4_2:61223833-61223852 | None:intergenic | 25.0% |
| TCATAGGTCTTCAATAGAAA+TGG | - | chr4_2:61222287-61222306 | None:intergenic | 30.0% | |
| TCTATTGAAGACCTATGATT+TGG | + | chr4_2:61222289-61222308 | Msa0612710:CDS | 30.0% | |
| ATGGCATTAAAATTGTGTCA+TGG | + | chr4_2:61222339-61222358 | Msa0612710:CDS | 30.0% | |
| TTTAGAGAGAAAATCGATCA+AGG | - | chr4_2:61222492-61222511 | None:intergenic | 30.0% | |
| GGAGTAAAAACTCAAAAACT+TGG | - | chr4_2:61222790-61222809 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTGTTTGTTCAC+TGG | + | chr4_2:61222809-61222828 | Msa0612710:intron | 30.0% |
| AAGTTCTTTGAATTACTTGG+GGG | + | chr4_2:61222858-61222877 | Msa0612710:intron | 30.0% | |
| GATGGTCCAAATTTCAAATT+TGG | - | chr4_2:61223008-61223027 | None:intergenic | 30.0% | |
| TTTGTTGAATCGAAATTGGA+TGG | - | chr4_2:61223026-61223045 | None:intergenic | 30.0% | |
| ! | GTCATTTGTTGAATCGAAAT+TGG | - | chr4_2:61223030-61223049 | None:intergenic | 30.0% |
| TTTAACGTTATACTGGTACT+TGG | + | chr4_2:61223255-61223274 | Msa0612710:intron | 30.0% | |
| TTAACGTTATACTGGTACTT+GGG | + | chr4_2:61223256-61223275 | Msa0612710:intron | 30.0% | |
| CAGCATGAGAAATTTCAAAA+GGG | + | chr4_2:61223549-61223568 | Msa0612710:CDS | 30.0% | |
| ! | ATATGTTGGTTGAAATCAGT+AGG | + | chr4_2:61223580-61223599 | Msa0612710:CDS | 30.0% |
| ATAACCGCCAAAATAAAGTT+AGG | + | chr4_2:61223823-61223842 | Msa0612710:CDS | 30.0% | |
| TCATAGGTCTTCAATAGAAA+TGG | - | chr4_2:61222287-61222306 | None:intergenic | 30.0% | |
| TCTATTGAAGACCTATGATT+TGG | + | chr4_2:61222289-61222308 | Msa0612710:CDS | 30.0% | |
| ATGGCATTAAAATTGTGTCA+TGG | + | chr4_2:61222339-61222358 | Msa0612710:CDS | 30.0% | |
| TTTAGAGAGAAAATCGATCA+AGG | - | chr4_2:61222492-61222511 | None:intergenic | 30.0% | |
| GGAGTAAAAACTCAAAAACT+TGG | - | chr4_2:61222790-61222809 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTGTTTGTTCAC+TGG | + | chr4_2:61222809-61222828 | Msa0612710:intron | 30.0% |
| AAGTTCTTTGAATTACTTGG+GGG | + | chr4_2:61222858-61222877 | Msa0612710:intron | 30.0% | |
| GATGGTCCAAATTTCAAATT+TGG | - | chr4_2:61223008-61223027 | None:intergenic | 30.0% | |
| TTTGTTGAATCGAAATTGGA+TGG | - | chr4_2:61223026-61223045 | None:intergenic | 30.0% | |
| ! | GTCATTTGTTGAATCGAAAT+TGG | - | chr4_2:61223030-61223049 | None:intergenic | 30.0% |
| TTTAACGTTATACTGGTACT+TGG | + | chr4_2:61223255-61223274 | Msa0612710:intron | 30.0% | |
| TTAACGTTATACTGGTACTT+GGG | + | chr4_2:61223256-61223275 | Msa0612710:intron | 30.0% | |
| CAGCATGAGAAATTTCAAAA+GGG | + | chr4_2:61223549-61223568 | Msa0612710:CDS | 30.0% | |
| ! | ATATGTTGGTTGAAATCAGT+AGG | + | chr4_2:61223580-61223599 | Msa0612710:CDS | 30.0% |
| ATAACCGCCAAAATAAAGTT+AGG | + | chr4_2:61223823-61223842 | Msa0612710:CDS | 30.0% | |
| ! | AATGTGATGGAGCTAAACTT+TGG | + | chr4_2:61222197-61222216 | Msa0612710:CDS | 35.0% |
| TCTTCAATAGAAATGGTGCA+GGG | - | chr4_2:61222280-61222299 | None:intergenic | 35.0% | |
| ! | ATTGAAGACCTATGATTTGG+TGG | + | chr4_2:61222292-61222311 | Msa0612710:CDS | 35.0% |
| ATTGTGTCATGGAATGAAGA+AGG | + | chr4_2:61222350-61222369 | Msa0612710:CDS | 35.0% | |
| TCATGGAATGAAGAAGGAAA+TGG | + | chr4_2:61222356-61222375 | Msa0612710:CDS | 35.0% | |
| !!! | AAGGAAATGGTTTTGTTGTG+TGG | + | chr4_2:61222369-61222388 | Msa0612710:CDS | 35.0% |
| GTGCTTGAAATATTTAGGCA+AGG | - | chr4_2:61222420-61222439 | None:intergenic | 35.0% | |
| !! | AAGAACTTTTGAGGAAGCTA+GGG | - | chr4_2:61222846-61222865 | None:intergenic | 35.0% |
| !! | AAAGAACTTTTGAGGAAGCT+AGG | - | chr4_2:61222847-61222866 | None:intergenic | 35.0% |
| AATTCATGCAGTCAAGACAT+CGG | + | chr4_2:61222910-61222929 | Msa0612710:intron | 35.0% | |
| AACAAATGACTCTAACTGTG+TGG | + | chr4_2:61223040-61223059 | Msa0612710:intron | 35.0% | |
| !! | CTACTGCAAAGTAATGGATT+TGG | - | chr4_2:61223084-61223103 | None:intergenic | 35.0% |
| AAAGAGCTACTGCAAAGTAA+TGG | - | chr4_2:61223090-61223109 | None:intergenic | 35.0% | |
| ATTACTTTGCAGTAGCTCTT+TGG | + | chr4_2:61223089-61223108 | Msa0612710:intron | 35.0% | |
| ! | ATTCTTCATTTTGTGCACGT+GGG | - | chr4_2:61223151-61223170 | None:intergenic | 35.0% |
| ! | AATTCTTCATTTTGTGCACG+TGG | - | chr4_2:61223152-61223171 | None:intergenic | 35.0% |
| CGTGCACAAAATGAAGAATT+TGG | + | chr4_2:61223152-61223171 | Msa0612710:intron | 35.0% | |
| !! | TGTACGACGATATTGACTTT+GGG | - | chr4_2:61223224-61223243 | None:intergenic | 35.0% |
| !!! | CCTTTTGAAATTTCTCATGC+TGG | - | chr4_2:61223551-61223570 | None:intergenic | 35.0% |
| CCAGCATGAGAAATTTCAAA+AGG | + | chr4_2:61223548-61223567 | Msa0612710:CDS | 35.0% | |
| AGAAATTTCAAAAGGGTTGC+AGG | + | chr4_2:61223556-61223575 | Msa0612710:CDS | 35.0% | |
| GAACAAGACTTGAGATATTG+AGG | - | chr4_2:61223630-61223649 | None:intergenic | 35.0% | |
| !! | ATATCTCAAGTCTTGTTCAG+AGG | + | chr4_2:61223632-61223651 | Msa0612710:CDS | 35.0% |
| TAGCAATCATGAACTACTCA+TGG | + | chr4_2:61223695-61223714 | Msa0612710:CDS | 35.0% | |
| ACAAGAACCTAAAGAAGGAA+AGG | + | chr4_2:61223724-61223743 | Msa0612710:CDS | 35.0% | |
| ACTCTAACCTTTCCTTCTTT+AGG | - | chr4_2:61223734-61223753 | None:intergenic | 35.0% | |
| AATGCAAATAGCTGAATGCA+AGG | + | chr4_2:61223758-61223777 | Msa0612710:CDS | 35.0% | |
| !!! | GTCTCCTAACTTTATTTTGG+CGG | - | chr4_2:61223830-61223849 | None:intergenic | 35.0% |
| ! | AATGTGATGGAGCTAAACTT+TGG | + | chr4_2:61222197-61222216 | Msa0612710:CDS | 35.0% |
| TCTTCAATAGAAATGGTGCA+GGG | - | chr4_2:61222280-61222299 | None:intergenic | 35.0% | |
| ! | ATTGAAGACCTATGATTTGG+TGG | + | chr4_2:61222292-61222311 | Msa0612710:CDS | 35.0% |
| ATTGTGTCATGGAATGAAGA+AGG | + | chr4_2:61222350-61222369 | Msa0612710:CDS | 35.0% | |
| TCATGGAATGAAGAAGGAAA+TGG | + | chr4_2:61222356-61222375 | Msa0612710:CDS | 35.0% | |
| !!! | AAGGAAATGGTTTTGTTGTG+TGG | + | chr4_2:61222369-61222388 | Msa0612710:CDS | 35.0% |
| GTGCTTGAAATATTTAGGCA+AGG | - | chr4_2:61222420-61222439 | None:intergenic | 35.0% | |
| !! | AAGAACTTTTGAGGAAGCTA+GGG | - | chr4_2:61222846-61222865 | None:intergenic | 35.0% |
| !! | AAAGAACTTTTGAGGAAGCT+AGG | - | chr4_2:61222847-61222866 | None:intergenic | 35.0% |
| AATTCATGCAGTCAAGACAT+CGG | + | chr4_2:61222910-61222929 | Msa0612710:intron | 35.0% | |
| AACAAATGACTCTAACTGTG+TGG | + | chr4_2:61223040-61223059 | Msa0612710:intron | 35.0% | |
| !! | CTACTGCAAAGTAATGGATT+TGG | - | chr4_2:61223084-61223103 | None:intergenic | 35.0% |
| AAAGAGCTACTGCAAAGTAA+TGG | - | chr4_2:61223090-61223109 | None:intergenic | 35.0% | |
| ATTACTTTGCAGTAGCTCTT+TGG | + | chr4_2:61223089-61223108 | Msa0612710:intron | 35.0% | |
| ! | ATTCTTCATTTTGTGCACGT+GGG | - | chr4_2:61223151-61223170 | None:intergenic | 35.0% |
| ! | AATTCTTCATTTTGTGCACG+TGG | - | chr4_2:61223152-61223171 | None:intergenic | 35.0% |
| CGTGCACAAAATGAAGAATT+TGG | + | chr4_2:61223152-61223171 | Msa0612710:intron | 35.0% | |
| !! | TGTACGACGATATTGACTTT+GGG | - | chr4_2:61223224-61223243 | None:intergenic | 35.0% |
| !!! | CCTTTTGAAATTTCTCATGC+TGG | - | chr4_2:61223551-61223570 | None:intergenic | 35.0% |
| CCAGCATGAGAAATTTCAAA+AGG | + | chr4_2:61223548-61223567 | Msa0612710:CDS | 35.0% | |
| AGAAATTTCAAAAGGGTTGC+AGG | + | chr4_2:61223556-61223575 | Msa0612710:CDS | 35.0% | |
| GAACAAGACTTGAGATATTG+AGG | - | chr4_2:61223630-61223649 | None:intergenic | 35.0% | |
| !! | ATATCTCAAGTCTTGTTCAG+AGG | + | chr4_2:61223632-61223651 | Msa0612710:CDS | 35.0% |
| TAGCAATCATGAACTACTCA+TGG | + | chr4_2:61223695-61223714 | Msa0612710:CDS | 35.0% | |
| ACAAGAACCTAAAGAAGGAA+AGG | + | chr4_2:61223724-61223743 | Msa0612710:CDS | 35.0% | |
| ACTCTAACCTTTCCTTCTTT+AGG | - | chr4_2:61223734-61223753 | None:intergenic | 35.0% | |
| AATGCAAATAGCTGAATGCA+AGG | + | chr4_2:61223758-61223777 | Msa0612710:CDS | 35.0% | |
| !!! | GTCTCCTAACTTTATTTTGG+CGG | - | chr4_2:61223830-61223849 | None:intergenic | 35.0% |
| GTCTTCAATAGAAATGGTGC+AGG | - | chr4_2:61222281-61222300 | None:intergenic | 40.0% | |
| !! | ACCTATGATTTGGTGGAACA+AGG | + | chr4_2:61222299-61222318 | Msa0612710:CDS | 40.0% |
| ACCTTGTTCCACCAAATCAT+AGG | - | chr4_2:61222303-61222322 | None:intergenic | 40.0% | |
| GAGAGAAAATCGATCAAGGT+AGG | - | chr4_2:61222488-61222507 | None:intergenic | 40.0% | |
| CCTTCATATTAGTGGCAGAA+AGG | - | chr4_2:61222629-61222648 | None:intergenic | 40.0% | |
| CCTTTCTGCCACTAATATGA+AGG | + | chr4_2:61222626-61222645 | Msa0612710:intron | 40.0% | |
| CTTTGAATTACTTGGGGGAT+TGG | + | chr4_2:61222863-61222882 | Msa0612710:intron | 40.0% | |
| !! | GTAATGGATTTGGATCTGCT+GGG | - | chr4_2:61223074-61223093 | None:intergenic | 40.0% |
| !! | AGTAATGGATTTGGATCTGC+TGG | - | chr4_2:61223075-61223094 | None:intergenic | 40.0% |
| !! | GTGTACGACGATATTGACTT+TGG | - | chr4_2:61223225-61223244 | None:intergenic | 40.0% |
| AGATATTGAGGAAACACGCT+TGG | - | chr4_2:61223618-61223637 | None:intergenic | 40.0% | |
| CAATCATGAACTACTCATGG+AGG | + | chr4_2:61223698-61223717 | Msa0612710:CDS | 40.0% | |
| GGAGAACAAGAACCTAAAGA+AGG | + | chr4_2:61223719-61223738 | Msa0612710:CDS | 40.0% | |
| GGCACTTGAAATGAAGTTGT+TGG | + | chr4_2:61223779-61223798 | Msa0612710:CDS | 40.0% | |
| GTCTTCAATAGAAATGGTGC+AGG | - | chr4_2:61222281-61222300 | None:intergenic | 40.0% | |
| !! | ACCTATGATTTGGTGGAACA+AGG | + | chr4_2:61222299-61222318 | Msa0612710:CDS | 40.0% |
| ACCTTGTTCCACCAAATCAT+AGG | - | chr4_2:61222303-61222322 | None:intergenic | 40.0% | |
| GAGAGAAAATCGATCAAGGT+AGG | - | chr4_2:61222488-61222507 | None:intergenic | 40.0% | |
| CCTTCATATTAGTGGCAGAA+AGG | - | chr4_2:61222629-61222648 | None:intergenic | 40.0% | |
| CCTTTCTGCCACTAATATGA+AGG | + | chr4_2:61222626-61222645 | Msa0612710:intron | 40.0% | |
| CTTTGAATTACTTGGGGGAT+TGG | + | chr4_2:61222863-61222882 | Msa0612710:intron | 40.0% | |
| !! | GTAATGGATTTGGATCTGCT+GGG | - | chr4_2:61223074-61223093 | None:intergenic | 40.0% |
| !! | AGTAATGGATTTGGATCTGC+TGG | - | chr4_2:61223075-61223094 | None:intergenic | 40.0% |
| !! | GTGTACGACGATATTGACTT+TGG | - | chr4_2:61223225-61223244 | None:intergenic | 40.0% |
| AGATATTGAGGAAACACGCT+TGG | - | chr4_2:61223618-61223637 | None:intergenic | 40.0% | |
| CAATCATGAACTACTCATGG+AGG | + | chr4_2:61223698-61223717 | Msa0612710:CDS | 40.0% | |
| GGAGAACAAGAACCTAAAGA+AGG | + | chr4_2:61223719-61223738 | Msa0612710:CDS | 40.0% | |
| GGCACTTGAAATGAAGTTGT+TGG | + | chr4_2:61223779-61223798 | Msa0612710:CDS | 40.0% | |
| GAGTGTCCCTTAAGCCATTA+AGG | + | chr4_2:61222252-61222271 | Msa0612710:CDS | 45.0% | |
| ! | AGGGCACCTTAATGGCTTAA+GGG | - | chr4_2:61222261-61222280 | None:intergenic | 45.0% |
| TTGGTGGAACAAGGTAGTGA+AGG | + | chr4_2:61222308-61222327 | Msa0612710:CDS | 45.0% | |
| GGTAGTGAAGGTGAAGAAGA+TGG | + | chr4_2:61222320-61222339 | Msa0612710:CDS | 45.0% | |
| GTCTTGACTGCATGAATTCG+TGG | - | chr4_2:61222908-61222927 | None:intergenic | 45.0% | |
| AAAGGGTTGCAGGCATATGT+TGG | + | chr4_2:61223566-61223585 | Msa0612710:CDS | 45.0% | |
| GAGTGTCCCTTAAGCCATTA+AGG | + | chr4_2:61222252-61222271 | Msa0612710:CDS | 45.0% | |
| ! | AGGGCACCTTAATGGCTTAA+GGG | - | chr4_2:61222261-61222280 | None:intergenic | 45.0% |
| TTGGTGGAACAAGGTAGTGA+AGG | + | chr4_2:61222308-61222327 | Msa0612710:CDS | 45.0% | |
| GGTAGTGAAGGTGAAGAAGA+TGG | + | chr4_2:61222320-61222339 | Msa0612710:CDS | 45.0% | |
| GTCTTGACTGCATGAATTCG+TGG | - | chr4_2:61222908-61222927 | None:intergenic | 45.0% | |
| AAAGGGTTGCAGGCATATGT+TGG | + | chr4_2:61223566-61223585 | Msa0612710:CDS | 45.0% | |
| ! | CAGGGCACCTTAATGGCTTA+AGG | - | chr4_2:61222262-61222281 | None:intergenic | 50.0% |
| ! | AATGGTGCAGGGCACCTTAA+TGG | - | chr4_2:61222269-61222288 | None:intergenic | 50.0% |
| !! | GTGAGCTCTGAGAATTCAGC+TGG | - | chr4_2:61222398-61222417 | None:intergenic | 50.0% |
| ! | CTTCATTTTGTGCACGTGGG+TGG | - | chr4_2:61223148-61223167 | None:intergenic | 50.0% |
| ! | GGAGTGTCTCTCTCAGCATA+TGG | + | chr4_2:61223800-61223819 | Msa0612710:CDS | 50.0% |
| ! | CAGGGCACCTTAATGGCTTA+AGG | - | chr4_2:61222262-61222281 | None:intergenic | 50.0% |
| ! | AATGGTGCAGGGCACCTTAA+TGG | - | chr4_2:61222269-61222288 | None:intergenic | 50.0% |
| !! | GTGAGCTCTGAGAATTCAGC+TGG | - | chr4_2:61222398-61222417 | None:intergenic | 50.0% |
| ! | CTTCATTTTGTGCACGTGGG+TGG | - | chr4_2:61223148-61223167 | None:intergenic | 50.0% |
| ! | GGAGTGTCTCTCTCAGCATA+TGG | + | chr4_2:61223800-61223819 | Msa0612710:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 61222188 | 61223857 | 61222188 | ID=Msa0612710;Name=Msa0612710 |
| chr4_2 | mRNA | 61222188 | 61223857 | 61222188 | ID=Msa0612710-mRNA-1;Parent=Msa0612710;Name=Msa0612710-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|211 |
| chr4_2 | exon | 61222188 | 61222478 | 61222188 | ID=Msa0612710-mRNA-1:exon:16600;Parent=Msa0612710-mRNA-1 |
| chr4_2 | exon | 61223513 | 61223857 | 61223513 | ID=Msa0612710-mRNA-1:exon:16601;Parent=Msa0612710-mRNA-1 |
| chr4_2 | CDS | 61222188 | 61222478 | 61222188 | ID=Msa0612710-mRNA-1:cds;Parent=Msa0612710-mRNA-1 |
| chr4_2 | CDS | 61223513 | 61223857 | 61223513 | ID=Msa0612710-mRNA-1:cds;Parent=Msa0612710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
