AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0613020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613020 MtrunA17_Chr4g0047841 96.542 347 9 1 1 347 1 344 0.0 687
Msa0613020 MtrunA17_Chr2g0318101 55.135 370 99 13 1 330 1 343 1.96e-119 348
Msa0613020 MtrunA17_Chr7g0252971 64.737 190 41 3 10 192 3 173 1.15e-85 262
Msa0613020 MtrunA17_Chr7g0263931 52.245 245 92 4 14 255 10 232 6.21e-80 247
Msa0613020 MtrunA17_Chr2g0326361 63.842 177 45 2 15 191 14 171 8.50e-79 244
Msa0613020 MtrunA17_Chr5g0417791 62.147 177 46 2 14 190 2 157 3.95e-78 240
Msa0613020 MtrunA17_Chr4g0042561 64.205 176 42 3 15 190 9 163 4.64e-77 238
Msa0613020 MtrunA17_Chr3g0124761 65.922 179 36 3 14 191 6 160 4.92e-77 238
Msa0613020 MtrunA17_Chr2g0318081 62.903 186 44 3 12 197 13 173 1.99e-75 236
Msa0613020 MtrunA17_Chr8g0359921 63.441 186 45 3 12 197 11 173 5.50e-75 234
Msa0613020 MtrunA17_Chr8g0384721 58.416 202 47 5 15 207 7 180 1.81e-73 229
Msa0613020 MtrunA17_Chr3g0130731 59.474 190 46 4 14 196 6 171 2.33e-70 221
Msa0613020 MtrunA17_Chr5g0417001 38.689 305 141 6 15 314 14 277 6.72e-62 202
Msa0613020 MtrunA17_Chr6g0453131 51.596 188 70 4 15 199 15 184 8.41e-62 202
Msa0613020 MtrunA17_Chr8g0361731 51.136 176 72 1 17 192 16 177 4.98e-61 200
Msa0613020 MtrunA17_Chr7g0214071 54.444 180 54 3 12 191 12 163 6.57e-60 193
Msa0613020 MtrunA17_Chr6g0484441 49.730 185 66 3 12 196 2 159 3.09e-57 188
Msa0613020 MtrunA17_Chr2g0316971 51.685 178 65 3 14 191 22 178 7.11e-57 189
Msa0613020 MtrunA17_Chr2g0309891 41.736 242 112 5 15 251 6 223 2.50e-56 187
Msa0613020 MtrunA17_Chr4g0060931 49.718 177 66 3 15 191 17 170 1.34e-55 185
Msa0613020 MtrunA17_Chr3g0139331 48.603 179 63 2 15 191 11 162 3.40e-54 181
Msa0613020 MtrunA17_Chr3g0091921 50.556 180 66 4 12 191 13 169 9.17e-54 179
Msa0613020 MtrunA17_Chr5g0398971 44.878 205 78 6 14 211 6 182 1.05e-53 180
Msa0613020 MtrunA17_Chr4g0018391 43.627 204 82 5 14 211 6 182 5.71e-53 178
Msa0613020 MtrunA17_Chr1g0147421 48.315 178 62 3 15 189 27 177 7.65e-53 178
Msa0613020 MtrunA17_Chr6g0453451 47.191 178 71 4 14 191 19 173 1.66e-52 176
Msa0613020 MtrunA17_Chr4g0076731 47.568 185 68 4 17 198 56 214 1.87e-52 179
Msa0613020 MtrunA17_Chr6g0461661 48.295 176 70 2 15 190 18 172 2.66e-52 177
Msa0613020 MtrunA17_Chr3g0109821 45.972 211 82 6 15 223 6 186 1.21e-51 181
Msa0613020 MtrunA17_Chr7g0253011 48.370 184 72 4 15 196 17 179 1.25e-51 176
Msa0613020 MtrunA17_Chr5g0433781 48.718 195 70 5 15 207 6 172 1.27e-51 181
Msa0613020 MtrunA17_Chr1g0183741 45.763 177 69 2 15 191 10 159 3.55e-51 171
Msa0613020 MtrunA17_Chr6g0481091 47.159 176 66 3 15 188 6 156 3.74e-51 170
Msa0613020 MtrunA17_Chr5g0405211 43.367 196 74 5 1 193 1 162 3.81e-51 173
Msa0613020 MtrunA17_Chr2g0309331 43.889 180 72 3 15 191 10 163 7.21e-51 172
Msa0613020 MtrunA17_Chr5g0442771 46.857 175 74 3 17 188 20 178 7.38e-51 171
Msa0613020 MtrunA17_Chr7g0261411 46.512 172 65 2 15 186 10 154 1.30e-49 167
Msa0613020 MtrunA17_Chr4g0056541 42.268 194 78 4 14 204 6 168 1.53e-49 169
Msa0613020 MtrunA17_Chr5g0400461 55.072 138 55 2 15 145 6 143 1.60e-49 169
Msa0613020 MtrunA17_Chr8g0372121 44.444 180 70 4 15 191 6 158 2.27e-49 167
Msa0613020 MtrunA17_Chr4g0017921 46.927 179 64 5 15 190 8 158 3.36e-49 168
Msa0613020 MtrunA17_Chr1g0200561 41.667 216 89 6 3 213 12 195 3.43e-49 168
Msa0613020 MtrunA17_Chr8g0346001 43.617 188 87 5 6 190 6 177 5.02e-49 170
Msa0613020 MtrunA17_Chr2g0311651 47.090 189 81 5 17 198 24 200 5.76e-49 166
Msa0613020 MtrunA17_Chr2g0311661 43.961 207 96 5 17 220 23 212 8.18e-49 166
Msa0613020 MtrunA17_Chr2g0312321 43.299 194 84 4 12 205 8 175 5.10e-48 164
Msa0613020 MtrunA17_Chr8g0385991 46.629 178 75 3 14 191 13 170 1.02e-47 160
Msa0613020 MtrunA17_Chr4g0054791 53.901 141 62 2 15 152 6 146 1.30e-47 163
Msa0613020 MtrunA17_Chr7g0217721 45.665 173 84 2 18 190 22 184 1.47e-47 164
Msa0613020 MtrunA17_Chr3g0144271 53.793 145 63 2 15 158 23 164 1.65e-47 166
Msa0613020 MtrunA17_Chr7g0217711 52.985 134 57 2 18 147 22 153 4.13e-45 152
Msa0613020 MtrunA17_Chr3g0131911 47.486 179 73 4 15 191 14 173 4.54e-45 154
Msa0613020 MtrunA17_Chr4g0038751 42.553 188 78 4 5 191 6 164 5.98e-45 155
Msa0613020 MtrunA17_Chr1g0197351 46.067 178 75 3 15 190 42 200 1.12e-44 159
Msa0613020 MtrunA17_Chr5g0428991 45.856 181 69 5 15 192 25 179 3.12e-43 158
Msa0613020 MtrunA17_Chr1g0201021 53.030 132 58 2 17 146 21 150 4.80e-43 156
Msa0613020 MtrunA17_Chr3g0130101 42.614 176 74 4 15 188 7 157 1.49e-42 151
Msa0613020 MtrunA17_Chr3g0092671 45.810 179 66 6 17 191 7 158 2.36e-41 151
Msa0613020 MtrunA17_Chr3g0128151 43.956 182 73 5 15 193 22 177 5.44e-41 151
Msa0613020 MtrunA17_Chr8g0345671 49.315 146 67 4 13 152 6 150 1.53e-40 147
Msa0613020 MtrunA17_Chr1g0197361 43.258 178 72 4 17 191 10 161 2.55e-40 149
Msa0613020 MtrunA17_Chr8g0364791 50.000 132 62 2 13 142 4 133 1.34e-39 145
Msa0613020 MtrunA17_Chr3g0128111 41.243 177 77 4 18 192 45 196 9.76e-39 138
Msa0613020 MtrunA17_Chr4g0050701 39.655 174 80 2 15 188 11 159 1.18e-38 136
Msa0613020 MtrunA17_Chr8g0384201 48.485 132 64 2 13 142 4 133 2.12e-37 140
Msa0613020 MtrunA17_Chr4g0026141 40.201 199 87 7 15 204 5 180 5.26e-35 128
Msa0613020 MtrunA17_Chr8g0345691 43.662 142 76 3 14 152 11 151 2.25e-34 130
Msa0613020 MtrunA17_Chr2g0321631 36.957 230 106 9 16 229 5 211 6.76e-34 125
Msa0613020 MtrunA17_Chr3g0113001 46.617 133 49 4 60 192 10 120 5.71e-32 121
Msa0613020 MtrunA17_Chr8g0345711 44.186 129 68 3 15 140 12 139 2.21e-31 116
Msa0613020 MtrunA17_Chr8g0345731 45.865 133 63 4 15 140 24 154 2.51e-31 116
Msa0613020 MtrunA17_Chr7g0266701 35.912 181 91 5 15 189 4 165 4.82e-31 118
Msa0613020 MtrunA17_Chr2g0321741 50.000 98 46 2 44 140 21 116 1.84e-30 119
Msa0613020 MtrunA17_Chr8g0345721 39.053 169 65 5 13 144 28 195 6.04e-30 114
Msa0613020 MtrunA17_Chr8g0384351 39.080 174 61 6 15 188 10 138 5.76e-27 105
Msa0613020 MtrunA17_Chr7g0243371 56.790 81 35 0 68 148 17 97 2.19e-26 101
Msa0613020 MtrunA17_Chr8g0345701 41.259 143 64 5 15 140 7 146 7.49e-26 102
Msa0613020 MtrunA17_Chr8g0345741 40.476 126 69 4 26 146 2 126 3.14e-25 99.8
Msa0613020 MtrunA17_Chr3g0130321 35.227 176 89 7 15 187 7 160 4.63e-23 95.5
Msa0613020 MtrunA17_Chr3g0113031 42.735 117 38 4 78 190 3 94 6.75e-23 96.3
Msa0613020 MtrunA17_Chr7g0251651 34.965 143 87 4 15 155 18 156 4.59e-20 86.7
Msa0613020 MtrunA17_Chr7g0251661 34.615 130 79 4 15 142 10 135 1.26e-19 84.7
Msa0613020 MtrunA17_Chr7g0251671 34.043 141 85 5 7 144 2 137 1.03e-18 82.4
Msa0613020 MtrunA17_Chr4g0040541 31.443 194 106 9 13 187 46 231 1.29e-12 67.4
Msa0613020 MtrunA17_Chr8g0389661 34.437 151 73 8 15 142 47 194 1.43e-11 65.5
Msa0613020 MtrunA17_Chr1g0194791 61.702 47 15 2 17 61 48 93 1.95e-11 60.1
Msa0613020 MtrunA17_Chr8g0367761 27.746 173 106 6 1 157 54 223 3.36e-11 62.8
Msa0613020 MtrunA17_Chr4g0046431 27.586 174 107 6 1 158 54 224 4.35e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613020 AT1G61110.1 54.167 360 110 13 1 345 1 320 1.07e-109 323
Msa0613020 AT3G15510.1 50.258 388 122 14 1 345 1 360 1.89e-101 303
Msa0613020 AT3G04070.1 63.298 188 66 1 8 192 3 190 6.42e-84 258
Msa0613020 AT3G04070.2 62.766 188 51 3 8 192 3 174 1.62e-80 249
Msa0613020 AT1G69490.1 60.963 187 52 3 8 194 2 167 1.47e-79 244
Msa0613020 AT1G52880.1 50.804 311 111 8 1 292 1 288 7.42e-78 241
Msa0613020 AT4G27410.2 62.983 181 42 3 12 192 11 166 1.12e-75 235
Msa0613020 AT1G01720.1 64.246 179 42 2 14 192 6 162 4.83e-75 233
Msa0613020 AT1G52890.1 64.088 181 40 4 12 192 11 166 1.06e-74 233
Msa0613020 AT1G77450.1 64.205 176 38 3 14 188 9 160 3.33e-74 230
Msa0613020 AT5G08790.1 56.621 219 69 5 15 231 7 201 4.38e-74 231
Msa0613020 AT3G15500.1 64.088 181 40 3 12 192 11 166 6.85e-74 231
Msa0613020 AT5G63790.1 55.000 220 73 4 14 232 49 243 2.76e-73 229
Msa0613020 AT5G63790.2 55.000 220 73 4 14 232 59 253 4.20e-73 229
Msa0613020 AT4G27410.3 57.576 198 42 4 12 192 11 183 2.59e-71 224
Msa0613020 AT5G39820.1 52.432 185 80 4 17 198 22 201 9.26e-63 203
Msa0613020 AT1G26870.1 50.556 180 75 1 15 194 16 181 7.03e-62 203
Msa0613020 AT5G13180.1 53.933 178 55 3 14 191 13 163 5.17e-58 188
Msa0613020 AT5G39610.1 50.538 186 68 5 15 199 20 182 3.43e-57 187
Msa0613020 AT1G76420.1 50.286 175 63 2 15 189 22 172 4.39e-57 189
Msa0613020 AT5G18270.2 49.741 193 75 4 15 207 21 191 1.21e-56 187
Msa0613020 AT3G18400.1 49.171 181 66 3 12 192 2 156 2.77e-56 186
Msa0613020 AT5G61430.1 52.247 178 62 4 12 189 13 167 2.91e-56 186
Msa0613020 AT5G07680.1 52.247 178 62 4 12 189 14 168 6.95e-56 185
Msa0613020 AT5G53950.1 49.718 177 68 2 14 190 16 171 7.48e-56 187
Msa0613020 AT5G07680.2 52.571 175 60 4 15 189 3 154 9.64e-56 184
Msa0613020 AT5G18270.1 48.705 193 77 4 15 207 21 191 1.17e-55 185
Msa0613020 AT2G24430.2 48.876 178 67 2 15 192 16 169 2.56e-55 183
Msa0613020 AT2G24430.1 48.876 178 67 2 15 192 16 169 2.56e-55 183
Msa0613020 AT3G29035.1 61.654 133 49 1 10 142 19 149 4.47e-55 183
Msa0613020 AT3G04060.1 50.838 179 66 3 15 193 20 176 2.86e-54 181
Msa0613020 AT3G03200.1 45.411 207 83 5 15 219 6 184 6.79e-54 184
Msa0613020 AT3G15170.1 48.295 176 70 2 15 190 20 174 1.21e-53 179
Msa0613020 AT2G33480.2 50.000 184 56 5 14 193 14 165 6.12e-53 176
Msa0613020 AT2G02450.1 60.317 126 49 1 17 142 53 177 8.23e-53 179
Msa0613020 AT2G02450.2 60.317 126 49 1 17 142 53 177 1.15e-52 179
Msa0613020 AT2G33480.1 50.543 184 57 6 14 193 14 167 3.67e-52 174
Msa0613020 AT1G12260.2 46.629 178 65 4 14 188 6 156 1.62e-51 174
Msa0613020 AT5G17260.1 44.845 194 77 4 15 206 6 171 1.71e-51 178
Msa0613020 AT1G12260.1 46.629 178 65 4 14 188 6 156 2.61e-51 175
Msa0613020 AT4G36160.2 45.550 191 69 6 1 188 5 163 2.88e-51 175
Msa0613020 AT1G71930.2 40.758 211 93 4 12 219 6 187 2.99e-51 173
Msa0613020 AT1G71930.1 40.758 211 93 4 12 219 6 187 2.99e-51 173
Msa0613020 AT4G36160.1 45.550 191 69 6 1 188 1 159 3.20e-51 174
Msa0613020 AT4G36160.3 45.550 191 69 6 1 188 1 159 3.20e-51 174
Msa0613020 AT1G79580.3 43.005 193 80 3 1 190 3 168 3.73e-51 174
Msa0613020 AT1G79580.5 43.005 193 80 3 1 190 3 168 3.73e-51 174
Msa0613020 AT1G79580.4 43.005 193 80 3 1 190 3 168 3.73e-51 174
Msa0613020 AT1G79580.2 43.005 193 80 3 1 190 3 168 3.73e-51 174
Msa0613020 AT1G79580.1 43.005 193 80 3 1 190 3 168 3.73e-51 174
Msa0613020 AT5G62380.2 46.114 193 69 6 14 199 6 170 3.81e-51 174
Msa0613020 AT5G62380.1 46.114 193 69 6 14 199 6 170 3.81e-51 174
Msa0613020 AT5G46590.2 55.034 149 59 3 7 153 3 145 3.86e-51 172
Msa0613020 AT5G46590.1 55.034 149 59 3 7 153 3 145 4.69e-51 172
Msa0613020 AT5G66300.1 43.478 207 80 6 8 207 9 185 1.98e-50 170
Msa0613020 AT2G18060.3 45.109 184 67 5 8 188 6 158 2.80e-50 172
Msa0613020 AT2G18060.1 45.109 184 67 5 8 188 6 158 2.80e-50 172
Msa0613020 AT2G43000.1 42.453 212 92 5 17 222 20 207 3.46e-50 169
Msa0613020 AT1G65910.1 40.889 225 97 6 15 236 6 197 4.08e-50 177
Msa0613020 AT4G17980.1 54.795 146 57 3 7 148 3 143 8.76e-50 167
Msa0613020 AT4G17980.2 55.172 145 56 3 7 147 3 142 1.14e-49 168
Msa0613020 AT3G17730.1 47.727 176 65 6 15 188 6 156 2.01e-49 166
Msa0613020 AT1G56010.2 41.089 202 96 4 5 205 9 188 2.55e-49 168
Msa0613020 AT1G62700.1 43.784 185 74 4 15 196 7 164 5.92e-49 169
Msa0613020 AT1G62700.2 43.784 185 74 4 15 196 7 164 5.92e-49 169
Msa0613020 AT3G10480.1 45.789 190 77 3 3 190 15 180 1.37e-48 169
Msa0613020 AT4G10350.1 45.810 179 69 4 15 190 9 162 2.11e-48 166
Msa0613020 AT3G10480.2 45.789 190 76 4 3 190 15 179 2.76e-48 169
Msa0613020 AT1G33280.1 45.810 179 66 4 15 190 8 158 3.59e-48 164
Msa0613020 AT1G54330.1 47.159 176 63 4 15 188 6 153 2.51e-47 162
Msa0613020 AT2G46770.1 42.487 193 96 5 1 190 2 182 2.70e-47 164
Msa0613020 AT3G12977.1 43.503 177 76 3 12 188 15 167 2.75e-47 161
Msa0613020 AT3G61910.1 42.246 187 91 4 8 190 4 177 3.23e-47 163
Msa0613020 AT3G10490.1 43.684 190 81 3 3 190 15 180 4.00e-47 160
Msa0613020 AT1G32770.1 41.935 186 90 4 8 190 9 179 6.45e-47 163
Msa0613020 AT4G28530.1 42.347 196 70 3 15 194 10 178 1.14e-46 162
Msa0613020 AT1G32510.1 40.500 200 90 3 15 207 6 183 1.99e-46 159
Msa0613020 AT3G10500.1 45.251 179 71 3 15 191 9 162 3.52e-46 165
Msa0613020 AT3G10490.2 43.684 190 81 3 3 190 15 180 1.43e-45 161
Msa0613020 AT3G12910.1 47.778 180 77 6 17 192 23 189 1.94e-44 155
Msa0613020 AT5G04410.1 45.251 179 71 4 15 191 9 162 3.06e-44 160
Msa0613020 AT2G17040.1 39.151 212 92 5 17 224 8 186 3.20e-44 153
Msa0613020 AT1G34180.3 43.617 188 97 4 1 181 2 187 3.78e-44 157
Msa0613020 AT1G33060.2 46.995 183 70 5 15 195 24 181 6.21e-44 160
Msa0613020 AT1G33060.1 46.995 183 70 5 15 195 24 181 7.24e-44 160
Msa0613020 AT1G34180.1 43.617 188 97 4 1 181 2 187 1.66e-43 158
Msa0613020 AT1G34190.1 45.349 172 85 4 17 181 18 187 2.14e-43 157
Msa0613020 AT3G10480.3 39.013 223 77 3 3 190 15 213 2.46e-43 157
Msa0613020 AT1G34180.4 41.000 200 97 4 1 181 2 199 1.90e-42 153
Msa0613020 AT4G35580.3 56.589 129 52 2 15 141 9 135 2.44e-42 154
Msa0613020 AT4G35580.2 56.589 129 52 2 15 141 9 135 2.50e-42 154
Msa0613020 AT4G35580.1 56.589 129 52 2 15 141 9 135 2.88e-42 154
Msa0613020 AT1G34180.2 41.000 200 97 4 1 181 2 199 7.72e-42 154
Msa0613020 AT5G24590.2 55.039 129 55 2 15 141 13 140 1.20e-41 151
Msa0613020 AT2G27300.1 51.181 127 59 2 15 140 14 138 1.21e-41 148
Msa0613020 AT3G49530.2 51.128 133 62 2 15 145 13 144 8.00e-41 148
Msa0613020 AT3G49530.1 51.128 133 62 2 15 145 13 144 1.26e-40 149
Msa0613020 AT5G09330.5 51.908 131 59 2 14 142 5 133 1.65e-40 149
Msa0613020 AT5G09330.2 51.908 131 59 2 14 142 5 133 1.65e-40 149
Msa0613020 AT5G09330.4 51.908 131 59 2 14 142 5 133 1.65e-40 149
Msa0613020 AT5G09330.3 51.908 131 59 2 14 142 5 133 1.65e-40 149
Msa0613020 AT5G09330.1 51.908 131 59 2 14 142 5 133 1.65e-40 149
Msa0613020 AT5G64060.1 49.231 130 62 2 15 142 6 133 1.38e-39 143
Msa0613020 AT5G64530.1 42.135 178 82 4 15 192 3 159 1.20e-38 136
Msa0613020 AT3G44290.2 46.875 128 65 2 17 143 16 141 1.33e-37 135
Msa0613020 AT5G22290.1 43.165 139 76 2 3 140 9 145 2.00e-37 137
Msa0613020 AT3G44290.1 46.875 128 65 2 17 143 16 141 5.59e-37 136
Msa0613020 AT1G32870.2 56.923 130 50 3 15 142 10 135 1.06e-36 139
Msa0613020 AT1G32870.1 56.923 130 50 3 15 142 10 135 1.25e-36 139
Msa0613020 AT1G32870.3 56.923 130 50 3 15 142 46 171 2.41e-36 138
Msa0613020 AT5G64530.2 49.219 128 53 2 15 142 3 118 1.09e-35 127
Msa0613020 AT5G04395.1 39.610 154 79 2 3 142 16 169 2.02e-34 125
Msa0613020 AT5G61430.2 50.794 126 39 4 64 189 2 104 3.29e-33 124
Msa0613020 AT3G44350.2 34.091 220 104 8 14 222 4 193 4.24e-32 120
Msa0613020 AT1G56010.1 40.845 142 62 3 64 205 2 121 2.69e-31 119
Msa0613020 AT3G04420.2 44.186 129 66 3 16 140 4 130 1.50e-29 115
Msa0613020 AT3G04420.1 44.186 129 66 3 16 140 4 130 3.60e-29 115
Msa0613020 AT3G44350.1 40.876 137 71 4 14 143 4 137 4.14e-29 110
Msa0613020 AT5G22380.1 37.017 181 86 6 18 192 8 166 8.14e-29 112
Msa0613020 AT4G01550.1 41.727 139 77 3 18 152 7 145 1.06e-28 115
Msa0613020 AT4G28530.2 38.298 188 91 5 15 180 10 194 1.21e-28 113
Msa0613020 AT3G12977.2 43.200 125 47 3 64 188 14 114 4.80e-28 109
Msa0613020 AT2G33480.3 46.923 130 38 5 68 193 8 110 1.19e-27 108
Msa0613020 AT1G02230.1 42.308 130 67 4 16 140 4 130 1.59e-27 111
Msa0613020 AT4G10350.2 45.528 123 42 3 68 190 18 115 2.01e-27 109
Msa0613020 AT4G01520.1 43.182 132 70 4 16 142 5 136 5.81e-25 103
Msa0613020 AT4G01540.3 43.846 130 68 4 18 142 7 136 1.92e-24 103
Msa0613020 AT1G02250.1 41.538 130 68 4 16 140 4 130 2.95e-24 102
Msa0613020 AT4G01540.4 43.846 130 68 4 18 142 7 136 3.07e-24 102
Msa0613020 AT4G01540.1 43.846 130 68 4 18 142 7 136 3.44e-24 103
Msa0613020 AT4G01540.2 43.846 130 68 4 18 142 7 136 4.36e-24 102
Msa0613020 AT1G02220.1 40.310 129 68 4 16 140 4 127 1.10e-22 98.2
Msa0613020 AT5G14000.2 35.664 143 84 4 15 153 15 153 6.28e-21 88.6
Msa0613020 AT5G14000.1 36.923 130 76 3 15 142 15 140 4.59e-20 87.4
Msa0613020 AT1G01010.1 38.028 142 72 7 18 146 6 144 8.77e-20 90.1
Msa0613020 AT2G43000.2 36.842 152 66 5 77 222 2 129 8.99e-20 86.3
Msa0613020 AT3G56530.1 34.286 140 87 3 15 151 52 189 3.57e-17 81.6
Msa0613020 AT3G55210.1 32.474 194 88 9 15 194 11 175 6.41e-17 80.1
Msa0613020 AT5G50820.1 32.450 151 86 5 14 162 16 152 1.54e-16 77.4
Msa0613020 AT3G10490.4 37.864 103 40 2 88 190 2 80 4.19e-15 75.9
Msa0613020 AT3G10490.3 37.864 103 40 2 88 190 2 80 4.19e-15 75.9
Msa0613020 AT2G18060.2 38.542 96 32 3 93 188 2 70 1.13e-14 73.9
Msa0613020 AT3G04430.1 35.714 140 76 5 21 148 6 143 1.19e-13 69.3
Msa0613020 AT1G28470.1 32.653 147 78 8 13 142 75 217 8.15e-13 68.9
Msa0613020 AT1G25580.1 32.075 159 89 7 13 158 56 208 1.59e-12 68.6
Msa0613020 AT5G56620.3 31.613 155 76 6 15 142 43 194 2.25e-12 68.2
Msa0613020 AT5G56620.2 31.613 155 76 6 15 142 43 194 2.88e-12 67.8
Msa0613020 AT4G29230.1 34.416 154 74 8 15 144 48 198 4.09e-12 67.4
Msa0613020 AT4G29230.2 34.416 154 74 8 15 144 47 197 4.67e-12 67.4
Msa0613020 AT5G56620.1 31.613 155 76 6 15 142 43 194 4.80e-12 67.0
Msa0613020 AT4G29230.3 32.934 167 85 8 15 157 48 211 8.62e-12 66.2
Msa0613020 AT4G28500.1 31.902 163 91 6 13 158 57 216 6.52e-11 63.2

Find 81 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCCAAGGCCACTCTTAA+TGG 0.200176 4_2:+61568891 Msa0613020:CDS
CAAAAGGAGTTAAAACTAAT+TGG 0.207995 4_2:+61568329 Msa0613020:CDS
CCTAATAGGGCTGCTACTTC+TGG 0.215436 4_2:+61568205 Msa0613020:CDS
TTTCATCAAAATTCAATTCT+TGG 0.231872 4_2:+61569273 Msa0613020:CDS
CAAATGGAGCAAGGCCTAAT+AGG 0.244485 4_2:+61568191 Msa0613020:CDS
AATGATGACAATTTCTTTGA+TGG 0.253304 4_2:+61568994 Msa0613020:CDS
AAGTTGCATTATAAGAATTA+TGG 0.255796 4_2:-61568390 None:intergenic
GTTATAGGTAAAGCAAGTTT+TGG 0.260496 4_2:+61568124 Msa0613020:intron
CTATTAGGCCTTGCTCCATT+TGG 0.269221 4_2:-61568190 None:intergenic
GAATTCTTCTTGTTATTGTT+TGG 0.278889 4_2:-61568445 None:intergenic
TAAATGCATCATCACAGTTT+TGG 0.311946 4_2:+61569115 Msa0613020:CDS
TTCATCAAAATTCAATTCTT+GGG 0.336065 4_2:+61569274 Msa0613020:CDS
GCATTTAGTGCACGTTTCAT+AGG 0.337891 4_2:-61569099 None:intergenic
TATTAGGCCTTGCTCCATTT+GGG 0.342599 4_2:-61568189 None:intergenic
AGCTGCTTCTGCACCTCTTC+CGG 0.346733 4_2:+61567894 Msa0613020:CDS
TCTTCAAGCAAACGGTTTCA+TGG 0.349803 4_2:+61569165 Msa0613020:CDS
CCAGAAGTAGCAGCCCTATT+AGG 0.356475 4_2:-61568205 None:intergenic
CTTCAAGAAGCACAAGTTAT+GGG 0.361420 4_2:+61568965 Msa0613020:CDS
CCTGGTGGTAGGTGGGGCTG+TGG 0.362539 4_2:-61567817 None:intergenic
AATGATCACGGAATGCAAAA+TGG 0.381179 4_2:+61569027 Msa0613020:CDS
AATTCAATTCTTGGGTCTGT+TGG 0.387343 4_2:+61569282 Msa0613020:CDS
TCTTCAAGAAGCACAAGTTA+TGG 0.395686 4_2:+61568964 Msa0613020:CDS
TTCTTCTTGTTATTGTTTGG+AGG 0.403734 4_2:-61568442 None:intergenic
CTTCATCTGTTGGGTGGAAT+CGG 0.411927 4_2:-61567843 None:intergenic
TGATCCATTAAGAGTGGCCT+TGG 0.412912 4_2:-61568895 None:intergenic
TTCCCATCAGATGTTAATAT+AGG 0.417975 4_2:-61568256 None:intergenic
GGGCTGCTACTTCTGGGTAT+TGG 0.442139 4_2:+61568212 Msa0613020:CDS
ATCGGAACCCTGGTGGTAGG+TGG 0.443872 4_2:-61567825 None:intergenic
AAATGGAGCAAGGCCTAATA+GGG 0.447510 4_2:+61568192 Msa0613020:CDS
GCTTCTTGAAGATGAATGTT+TGG 0.449692 4_2:-61568953 None:intergenic
TCGGAACCCTGGTGGTAGGT+GGG 0.455346 4_2:-61567824 None:intergenic
AAGCCTATATTAACATCTGA+TGG 0.457224 4_2:+61568253 Msa0613020:CDS
GAGATCAATTTCTGCTATGA+TGG 0.458317 4_2:-61567920 None:intergenic
CTAATAGGGCTGCTACTTCT+GGG 0.460184 4_2:+61568206 Msa0613020:CDS
TTCATACTTGGGAGTTCCCA+TGG 0.461026 4_2:-61567955 None:intergenic
GAGGCAACAATTTCAACTTC+CGG 0.462175 4_2:+61569317 Msa0613020:CDS
TGGAATGAAACAGGGTCACC+AGG 0.466947 4_2:+61569135 Msa0613020:CDS
CAACGAGTTCTTCATCTGTT+GGG 0.474906 4_2:-61567852 None:intergenic
CCACAGCCCCACCTACCACC+AGG 0.477173 4_2:+61567817 Msa0613020:CDS
AACTAGTTCGAATTTATGTC+CGG 0.478860 4_2:-61569336 None:intergenic
TCTGGGTATTGGAAAGCTAC+TGG 0.487868 4_2:+61568223 Msa0613020:CDS
ATTGGATTATGCATGAGTAT+AGG 0.493789 4_2:+61568347 Msa0613020:CDS
CATTTAGTGCACGTTTCATA+GGG 0.495376 4_2:-61569098 None:intergenic
GGTCATCTTCTTCAAGCAAA+CGG 0.495966 4_2:+61569157 Msa0613020:CDS
GCTATGATGGCTACCGGAAG+AGG 0.498698 4_2:-61567907 None:intergenic
TCTGATGGGAATCAGAAAGT+TGG 0.499516 4_2:+61568268 Msa0613020:CDS
ATTCTTGGGTCTGTTGGAGA+TGG 0.501582 4_2:+61569288 Msa0613020:CDS
CGGAACCCTGGTGGTAGGTG+GGG 0.523284 4_2:-61567823 None:intergenic
ACAACGAGTTCTTCATCTGT+TGG 0.524281 4_2:-61567853 None:intergenic
ATCTCTACAAATTCGACCCA+TGG 0.531070 4_2:+61567938 Msa0613020:CDS
AGGGATAGAAAATACCCAAA+TGG 0.534980 4_2:+61568175 Msa0613020:CDS
TATGGAGGGAAGCCACCAAA+AGG 0.535327 4_2:+61568313 Msa0613020:CDS
TGATGAAAAGTTGTGTTTGG+TGG 0.540337 4_2:-61569258 None:intergenic
AAGTTGTGTTTGGTGGAAGC+TGG 0.544443 4_2:-61569251 None:intergenic
TGTGCATATACATACCCTTA+GGG 0.545490 4_2:-61568467 None:intergenic
GGTTGTGACACAAACTCAAA+GGG 0.556107 4_2:+61569048 Msa0613020:CDS
TTGTTTGGAGGATGATCAGA+AGG 0.562065 4_2:-61568430 None:intergenic
GGAATCGGAACCCTGGTGGT+AGG 0.568875 4_2:-61567828 None:intergenic
GGATGATCAGAAGGCAGAGG+AGG 0.572911 4_2:-61568421 None:intergenic
GGAGGATGATCAGAAGGCAG+AGG 0.572927 4_2:-61568424 None:intergenic
ATAACAAGAAGAATTCCCTA+AGG 0.573041 4_2:+61568452 Msa0613020:CDS
TGGTTGTGACACAAACTCAA+AGG 0.577669 4_2:+61569047 Msa0613020:CDS
ATTTCTGCTATGATGGCTAC+CGG 0.585689 4_2:-61567913 None:intergenic
TCATACTTGGGAGTTCCCAT+GGG 0.586431 4_2:-61567954 None:intergenic
CATTAAGAGTGGCCTTGGCA+TGG 0.590428 4_2:-61568890 None:intergenic
AGCCTATATTAACATCTGAT+GGG 0.592875 4_2:+61568254 Msa0613020:CDS
CGAGTTCTTCATCTGTTGGG+TGG 0.593385 4_2:-61567849 None:intergenic
GTTGGGTGGAATCGGAACCC+TGG 0.600934 4_2:-61567835 None:intergenic
TAGAATAAGTAGCAATGCTG+AGG 0.611678 4_2:+61569200 Msa0613020:CDS
GCAACAGTAGCACCATGCCA+AGG 0.616723 4_2:+61568878 Msa0613020:CDS
GGAATCTTAGCAAATGATCA+CGG 0.627184 4_2:+61569015 Msa0613020:CDS
GAAAATACCCAAATGGAGCA+AGG 0.627854 4_2:+61568182 Msa0613020:CDS
CACAGCCCCACCTACCACCA+GGG 0.637122 4_2:+61567818 Msa0613020:CDS
TAACAAGAAGAATTCCCTAA+GGG 0.639219 4_2:+61568453 Msa0613020:CDS
TCTCTACAAATTCGACCCAT+GGG 0.642051 4_2:+61567939 Msa0613020:CDS
CTGTTGGAGATGGTGTAATG+AGG 0.645707 4_2:+61569298 Msa0613020:CDS
TCATATTGATCCATTAAGAG+TGG 0.647276 4_2:-61568901 None:intergenic
GGAATGAAACAGGGTCACCA+GGG 0.654300 4_2:+61569136 Msa0613020:CDS
GGGTGGAATCGGAACCCTGG+TGG 0.662428 4_2:-61567832 None:intergenic
TTGCTTGAAGAAGATGACCC+TGG 0.699438 4_2:-61569153 None:intergenic
TGTGACACAAACTCAAAGGG+TGG 0.701015 4_2:+61569051 Msa0613020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATGAATTAATAAATAAT+TGG + chr4_2:61568518-61568537 Msa0613020:intron 10.0%
!!! TTTTCTTTAATATAAAAACA+TGG - chr4_2:61568789-61568808 None:intergenic 10.0%
!!! TTAACATTTTTTTATTGTAT+TGG + chr4_2:61568810-61568829 Msa0613020:intron 10.0%
!! TTCATGAATTAATAAATAAT+TGG + chr4_2:61568518-61568537 Msa0613020:intron 10.0%
!!! TTTTCTTTAATATAAAAACA+TGG - chr4_2:61568789-61568808 None:intergenic 10.0%
!!! TTAACATTTTTTTATTGTAT+TGG + chr4_2:61568810-61568829 Msa0613020:intron 10.0%
!! AAAAAAAAAACAGAAAAAAC+AGG - chr4_2:61568095-61568114 None:intergenic 15.0%
!! AATTAATAAATAATTGGACA+TGG + chr4_2:61568524-61568543 Msa0613020:intron 15.0%
!!! TTTTTTTATTGTATTGGTTT+TGG + chr4_2:61568816-61568835 Msa0613020:intron 15.0%
!! AAAAAAAAAACAGAAAAAAC+AGG - chr4_2:61568095-61568114 None:intergenic 15.0%
!! AATTAATAAATAATTGGACA+TGG + chr4_2:61568524-61568543 Msa0613020:intron 15.0%
!!! TTTTTTTATTGTATTGGTTT+TGG + chr4_2:61568816-61568835 Msa0613020:intron 15.0%
!! AAAATTTCTTATGCAAAACA+AGG - chr4_2:61568046-61568065 None:intergenic 20.0%
!! AAGTTGCATTATAAGAATTA+TGG - chr4_2:61568393-61568412 None:intergenic 20.0%
!! TTTCATCAAAATTCAATTCT+TGG + chr4_2:61569273-61569292 Msa0613020:CDS 20.0%
!! TTCATCAAAATTCAATTCTT+GGG + chr4_2:61569274-61569293 Msa0613020:CDS 20.0%
!! AAAATTTCTTATGCAAAACA+AGG - chr4_2:61568046-61568065 None:intergenic 20.0%
!! AAGTTGCATTATAAGAATTA+TGG - chr4_2:61568393-61568412 None:intergenic 20.0%
!! TTTCATCAAAATTCAATTCT+TGG + chr4_2:61569273-61569292 Msa0613020:CDS 20.0%
!! TTCATCAAAATTCAATTCTT+GGG + chr4_2:61569274-61569293 Msa0613020:CDS 20.0%
! TGTGAAAAAGTTTCATACTT+GGG - chr4_2:61567969-61567988 None:intergenic 25.0%
! AATGGATGAAAAGATGAAAT+GGG - chr4_2:61567993-61568012 None:intergenic 25.0%
! AAATGGATGAAAAGATGAAA+TGG - chr4_2:61567994-61568013 None:intergenic 25.0%
! AAACAAGGAACATAAAATCT+AGG - chr4_2:61568031-61568050 None:intergenic 25.0%
! GAAAAAACAGGACAATATTT+CGG - chr4_2:61568083-61568102 None:intergenic 25.0%
!! TTATAGGTAAAGCAAGTTTT+GGG + chr4_2:61568125-61568144 Msa0613020:intron 25.0%
!!! AAGAAAGCACTTGTTTTTTA+TGG + chr4_2:61568295-61568314 Msa0613020:CDS 25.0%
!!! CAATTAGTTTTAACTCCTTT+TGG - chr4_2:61568331-61568350 None:intergenic 25.0%
! CAAAAGGAGTTAAAACTAAT+TGG + chr4_2:61568329-61568348 Msa0613020:CDS 25.0%
!!! GAATTCTTCTTGTTATTGTT+TGG - chr4_2:61568448-61568467 None:intergenic 25.0%
!!! TGTTGCTTTTCTTGTATATT+CGG - chr4_2:61568864-61568883 None:intergenic 25.0%
! AATGATGACAATTTCTTTGA+TGG + chr4_2:61568994-61569013 Msa0613020:CDS 25.0%
!! TTTTGATGAAAAGTTGTGTT+TGG - chr4_2:61569264-61569283 None:intergenic 25.0%
! TGTGAAAAAGTTTCATACTT+GGG - chr4_2:61567969-61567988 None:intergenic 25.0%
! AATGGATGAAAAGATGAAAT+GGG - chr4_2:61567993-61568012 None:intergenic 25.0%
! AAATGGATGAAAAGATGAAA+TGG - chr4_2:61567994-61568013 None:intergenic 25.0%
! AAACAAGGAACATAAAATCT+AGG - chr4_2:61568031-61568050 None:intergenic 25.0%
! GAAAAAACAGGACAATATTT+CGG - chr4_2:61568083-61568102 None:intergenic 25.0%
!! TTATAGGTAAAGCAAGTTTT+GGG + chr4_2:61568125-61568144 Msa0613020:intron 25.0%
!!! AAGAAAGCACTTGTTTTTTA+TGG + chr4_2:61568295-61568314 Msa0613020:CDS 25.0%
!!! CAATTAGTTTTAACTCCTTT+TGG - chr4_2:61568331-61568350 None:intergenic 25.0%
! CAAAAGGAGTTAAAACTAAT+TGG + chr4_2:61568329-61568348 Msa0613020:CDS 25.0%
!!! GAATTCTTCTTGTTATTGTT+TGG - chr4_2:61568448-61568467 None:intergenic 25.0%
!!! TGTTGCTTTTCTTGTATATT+CGG - chr4_2:61568864-61568883 None:intergenic 25.0%
! AATGATGACAATTTCTTTGA+TGG + chr4_2:61568994-61569013 Msa0613020:CDS 25.0%
!! TTTTGATGAAAAGTTGTGTT+TGG - chr4_2:61569264-61569283 None:intergenic 25.0%
GTGTGAAAAAGTTTCATACT+TGG - chr4_2:61567970-61567989 None:intergenic 30.0%
ATGGATGAAAAGATGAAATG+GGG - chr4_2:61567992-61568011 None:intergenic 30.0%
! GAACATAAAATCTAGGATGT+GGG - chr4_2:61568024-61568043 None:intergenic 30.0%
! GTTATAGGTAAAGCAAGTTT+TGG + chr4_2:61568124-61568143 Msa0613020:intron 30.0%
! TATAGGTAAAGCAAGTTTTG+GGG + chr4_2:61568126-61568145 Msa0613020:intron 30.0%
AAGCCTATATTAACATCTGA+TGG + chr4_2:61568253-61568272 Msa0613020:CDS 30.0%
AGCCTATATTAACATCTGAT+GGG + chr4_2:61568254-61568273 Msa0613020:CDS 30.0%
TTCCCATCAGATGTTAATAT+AGG - chr4_2:61568259-61568278 None:intergenic 30.0%
!!! AAAGCACTTGTTTTTTATGG+AGG + chr4_2:61568298-61568317 Msa0613020:CDS 30.0%
!!! AAGCACTTGTTTTTTATGGA+GGG + chr4_2:61568299-61568318 Msa0613020:CDS 30.0%
!!! TTAGTTTTAACTCCTTTTGG+TGG - chr4_2:61568328-61568347 None:intergenic 30.0%
ATTGGATTATGCATGAGTAT+AGG + chr4_2:61568347-61568366 Msa0613020:CDS 30.0%
!! TTCTTCTTGTTATTGTTTGG+AGG - chr4_2:61568445-61568464 None:intergenic 30.0%
ATAACAAGAAGAATTCCCTA+AGG + chr4_2:61568452-61568471 Msa0613020:CDS 30.0%
TAACAAGAAGAATTCCCTAA+GGG + chr4_2:61568453-61568472 Msa0613020:CDS 30.0%
ATTCATGAAACAAATGCACA+TGG - chr4_2:61568507-61568526 None:intergenic 30.0%
AAGATCAGACCATTCAAAAA+AGG - chr4_2:61568578-61568597 None:intergenic 30.0%
ATATTCACAGCTATGAAACA+CGG + chr4_2:61568619-61568638 Msa0613020:intron 30.0%
ACCAGTGTAATTAAATGTGT+TGG + chr4_2:61568695-61568714 Msa0613020:intron 30.0%
CCAGTGTAATTAAATGTGTT+GGG + chr4_2:61568696-61568715 Msa0613020:intron 30.0%
CAGTGTAATTAAATGTGTTG+GGG + chr4_2:61568697-61568716 Msa0613020:intron 30.0%
AATGACTATGCAATGAAACA+CGG - chr4_2:61568763-61568782 None:intergenic 30.0%
TCATATTGATCCATTAAGAG+TGG - chr4_2:61568904-61568923 None:intergenic 30.0%
!!! GGAGTTTTGTTGCATATTAT+AGG - chr4_2:61568935-61568954 None:intergenic 30.0%
! TAAATGCATCATCACAGTTT+TGG + chr4_2:61569115-61569134 Msa0613020:CDS 30.0%
GTGTGAAAAAGTTTCATACT+TGG - chr4_2:61567970-61567989 None:intergenic 30.0%
ATGGATGAAAAGATGAAATG+GGG - chr4_2:61567992-61568011 None:intergenic 30.0%
! GAACATAAAATCTAGGATGT+GGG - chr4_2:61568024-61568043 None:intergenic 30.0%
! GTTATAGGTAAAGCAAGTTT+TGG + chr4_2:61568124-61568143 Msa0613020:intron 30.0%
! TATAGGTAAAGCAAGTTTTG+GGG + chr4_2:61568126-61568145 Msa0613020:intron 30.0%
AAGCCTATATTAACATCTGA+TGG + chr4_2:61568253-61568272 Msa0613020:CDS 30.0%
AGCCTATATTAACATCTGAT+GGG + chr4_2:61568254-61568273 Msa0613020:CDS 30.0%
TTCCCATCAGATGTTAATAT+AGG - chr4_2:61568259-61568278 None:intergenic 30.0%
!!! AAAGCACTTGTTTTTTATGG+AGG + chr4_2:61568298-61568317 Msa0613020:CDS 30.0%
!!! AAGCACTTGTTTTTTATGGA+GGG + chr4_2:61568299-61568318 Msa0613020:CDS 30.0%
!!! TTAGTTTTAACTCCTTTTGG+TGG - chr4_2:61568328-61568347 None:intergenic 30.0%
ATTGGATTATGCATGAGTAT+AGG + chr4_2:61568347-61568366 Msa0613020:CDS 30.0%
!! TTCTTCTTGTTATTGTTTGG+AGG - chr4_2:61568445-61568464 None:intergenic 30.0%
ATAACAAGAAGAATTCCCTA+AGG + chr4_2:61568452-61568471 Msa0613020:CDS 30.0%
TAACAAGAAGAATTCCCTAA+GGG + chr4_2:61568453-61568472 Msa0613020:CDS 30.0%
ATTCATGAAACAAATGCACA+TGG - chr4_2:61568507-61568526 None:intergenic 30.0%
AAGATCAGACCATTCAAAAA+AGG - chr4_2:61568578-61568597 None:intergenic 30.0%
ATATTCACAGCTATGAAACA+CGG + chr4_2:61568619-61568638 Msa0613020:intron 30.0%
ACCAGTGTAATTAAATGTGT+TGG + chr4_2:61568695-61568714 Msa0613020:intron 30.0%
CCAGTGTAATTAAATGTGTT+GGG + chr4_2:61568696-61568715 Msa0613020:intron 30.0%
CAGTGTAATTAAATGTGTTG+GGG + chr4_2:61568697-61568716 Msa0613020:intron 30.0%
AATGACTATGCAATGAAACA+CGG - chr4_2:61568763-61568782 None:intergenic 30.0%
TCATATTGATCCATTAAGAG+TGG - chr4_2:61568904-61568923 None:intergenic 30.0%
!!! GGAGTTTTGTTGCATATTAT+AGG - chr4_2:61568935-61568954 None:intergenic 30.0%
! TAAATGCATCATCACAGTTT+TGG + chr4_2:61569115-61569134 Msa0613020:CDS 30.0%
GAGATCAATTTCTGCTATGA+TGG - chr4_2:61567923-61567942 None:intergenic 35.0%
! GGAACATAAAATCTAGGATG+TGG - chr4_2:61568025-61568044 None:intergenic 35.0%
! TTGGGTATTTTCTATCCCTT+GGG - chr4_2:61568174-61568193 None:intergenic 35.0%
! TTTGGGTATTTTCTATCCCT+TGG - chr4_2:61568175-61568194 None:intergenic 35.0%
AGGGATAGAAAATACCCAAA+TGG + chr4_2:61568175-61568194 Msa0613020:CDS 35.0%
TGTGCATATACATACCCTTA+GGG - chr4_2:61568470-61568489 None:intergenic 35.0%
!!! CTCTCTGTTCCTTTTTTGAA+TGG + chr4_2:61568566-61568585 Msa0613020:intron 35.0%
CCCAACACATTTAATTACAC+TGG - chr4_2:61568699-61568718 None:intergenic 35.0%
GCTTCTTGAAGATGAATGTT+TGG - chr4_2:61568956-61568975 None:intergenic 35.0%
! TCTTCAAGAAGCACAAGTTA+TGG + chr4_2:61568964-61568983 Msa0613020:CDS 35.0%
! CTTCAAGAAGCACAAGTTAT+GGG + chr4_2:61568965-61568984 Msa0613020:CDS 35.0%
GGAATCTTAGCAAATGATCA+CGG + chr4_2:61569015-61569034 Msa0613020:CDS 35.0%
AATGATCACGGAATGCAAAA+TGG + chr4_2:61569027-61569046 Msa0613020:CDS 35.0%
CATTTAGTGCACGTTTCATA+GGG - chr4_2:61569101-61569120 None:intergenic 35.0%
!!! TCACAGTTTTGGAATGAAAC+AGG + chr4_2:61569126-61569145 Msa0613020:CDS 35.0%
!!! CACAGTTTTGGAATGAAACA+GGG + chr4_2:61569127-61569146 Msa0613020:CDS 35.0%
TAGAATAAGTAGCAATGCTG+AGG + chr4_2:61569200-61569219 Msa0613020:CDS 35.0%
TGATGAAAAGTTGTGTTTGG+TGG - chr4_2:61569261-61569280 None:intergenic 35.0%
AATTCAATTCTTGGGTCTGT+TGG + chr4_2:61569282-61569301 Msa0613020:CDS 35.0%
GAGATCAATTTCTGCTATGA+TGG - chr4_2:61567923-61567942 None:intergenic 35.0%
! GGAACATAAAATCTAGGATG+TGG - chr4_2:61568025-61568044 None:intergenic 35.0%
! TTGGGTATTTTCTATCCCTT+GGG - chr4_2:61568174-61568193 None:intergenic 35.0%
! TTTGGGTATTTTCTATCCCT+TGG - chr4_2:61568175-61568194 None:intergenic 35.0%
AGGGATAGAAAATACCCAAA+TGG + chr4_2:61568175-61568194 Msa0613020:CDS 35.0%
TGTGCATATACATACCCTTA+GGG - chr4_2:61568470-61568489 None:intergenic 35.0%
!!! CTCTCTGTTCCTTTTTTGAA+TGG + chr4_2:61568566-61568585 Msa0613020:intron 35.0%
CCCAACACATTTAATTACAC+TGG - chr4_2:61568699-61568718 None:intergenic 35.0%
GCTTCTTGAAGATGAATGTT+TGG - chr4_2:61568956-61568975 None:intergenic 35.0%
! TCTTCAAGAAGCACAAGTTA+TGG + chr4_2:61568964-61568983 Msa0613020:CDS 35.0%
! CTTCAAGAAGCACAAGTTAT+GGG + chr4_2:61568965-61568984 Msa0613020:CDS 35.0%
GGAATCTTAGCAAATGATCA+CGG + chr4_2:61569015-61569034 Msa0613020:CDS 35.0%
AATGATCACGGAATGCAAAA+TGG + chr4_2:61569027-61569046 Msa0613020:CDS 35.0%
CATTTAGTGCACGTTTCATA+GGG - chr4_2:61569101-61569120 None:intergenic 35.0%
!!! TCACAGTTTTGGAATGAAAC+AGG + chr4_2:61569126-61569145 Msa0613020:CDS 35.0%
!!! CACAGTTTTGGAATGAAACA+GGG + chr4_2:61569127-61569146 Msa0613020:CDS 35.0%
TAGAATAAGTAGCAATGCTG+AGG + chr4_2:61569200-61569219 Msa0613020:CDS 35.0%
TGATGAAAAGTTGTGTTTGG+TGG - chr4_2:61569261-61569280 None:intergenic 35.0%
AATTCAATTCTTGGGTCTGT+TGG + chr4_2:61569282-61569301 Msa0613020:CDS 35.0%
CAACGAGTTCTTCATCTGTT+GGG - chr4_2:61567855-61567874 None:intergenic 40.0%
ACAACGAGTTCTTCATCTGT+TGG - chr4_2:61567856-61567875 None:intergenic 40.0%
! CAGAAGCAGCTTTTCTTTTG+AGG - chr4_2:61567885-61567904 None:intergenic 40.0%
ATTTCTGCTATGATGGCTAC+CGG - chr4_2:61567916-61567935 None:intergenic 40.0%
ATCTCTACAAATTCGACCCA+TGG + chr4_2:61567938-61567957 Msa0613020:CDS 40.0%
TCTCTACAAATTCGACCCAT+GGG + chr4_2:61567939-61567958 Msa0613020:CDS 40.0%
AGGATGTGGGTTTGAGTAAA+TGG - chr4_2:61568011-61568030 None:intergenic 40.0%
GAAAATACCCAAATGGAGCA+AGG + chr4_2:61568182-61568201 Msa0613020:CDS 40.0%
TATTAGGCCTTGCTCCATTT+GGG - chr4_2:61568192-61568211 None:intergenic 40.0%
AAATGGAGCAAGGCCTAATA+GGG + chr4_2:61568192-61568211 Msa0613020:CDS 40.0%
TCTGATGGGAATCAGAAAGT+TGG + chr4_2:61568268-61568287 Msa0613020:CDS 40.0%
TTGTTTGGAGGATGATCAGA+AGG - chr4_2:61568433-61568452 None:intergenic 40.0%
GTGTGCATATACATACCCTT+AGG - chr4_2:61568471-61568490 None:intergenic 40.0%
!!! TGGTTTTGGAGCTTGATGAT+TGG + chr4_2:61568830-61568849 Msa0613020:intron 40.0%
!!! GGTTTTGGAGCTTGATGATT+GGG + chr4_2:61568831-61568850 Msa0613020:intron 40.0%
TGGTTGTGACACAAACTCAA+AGG + chr4_2:61569047-61569066 Msa0613020:CDS 40.0%
GGTTGTGACACAAACTCAAA+GGG + chr4_2:61569048-61569067 Msa0613020:CDS 40.0%
GCATTTAGTGCACGTTTCAT+AGG - chr4_2:61569102-61569121 None:intergenic 40.0%
GGTCATCTTCTTCAAGCAAA+CGG + chr4_2:61569157-61569176 Msa0613020:CDS 40.0%
TCTTCAAGCAAACGGTTTCA+TGG + chr4_2:61569165-61569184 Msa0613020:CDS 40.0%
GAGGCAACAATTTCAACTTC+CGG + chr4_2:61569317-61569336 Msa0613020:CDS 40.0%
CAACGAGTTCTTCATCTGTT+GGG - chr4_2:61567855-61567874 None:intergenic 40.0%
ACAACGAGTTCTTCATCTGT+TGG - chr4_2:61567856-61567875 None:intergenic 40.0%
! CAGAAGCAGCTTTTCTTTTG+AGG - chr4_2:61567885-61567904 None:intergenic 40.0%
ATTTCTGCTATGATGGCTAC+CGG - chr4_2:61567916-61567935 None:intergenic 40.0%
ATCTCTACAAATTCGACCCA+TGG + chr4_2:61567938-61567957 Msa0613020:CDS 40.0%
TCTCTACAAATTCGACCCAT+GGG + chr4_2:61567939-61567958 Msa0613020:CDS 40.0%
AGGATGTGGGTTTGAGTAAA+TGG - chr4_2:61568011-61568030 None:intergenic 40.0%
GAAAATACCCAAATGGAGCA+AGG + chr4_2:61568182-61568201 Msa0613020:CDS 40.0%
TATTAGGCCTTGCTCCATTT+GGG - chr4_2:61568192-61568211 None:intergenic 40.0%
AAATGGAGCAAGGCCTAATA+GGG + chr4_2:61568192-61568211 Msa0613020:CDS 40.0%
TCTGATGGGAATCAGAAAGT+TGG + chr4_2:61568268-61568287 Msa0613020:CDS 40.0%
TTGTTTGGAGGATGATCAGA+AGG - chr4_2:61568433-61568452 None:intergenic 40.0%
GTGTGCATATACATACCCTT+AGG - chr4_2:61568471-61568490 None:intergenic 40.0%
!!! TGGTTTTGGAGCTTGATGAT+TGG + chr4_2:61568830-61568849 Msa0613020:intron 40.0%
!!! GGTTTTGGAGCTTGATGATT+GGG + chr4_2:61568831-61568850 Msa0613020:intron 40.0%
TGGTTGTGACACAAACTCAA+AGG + chr4_2:61569047-61569066 Msa0613020:CDS 40.0%
GGTTGTGACACAAACTCAAA+GGG + chr4_2:61569048-61569067 Msa0613020:CDS 40.0%
GCATTTAGTGCACGTTTCAT+AGG - chr4_2:61569102-61569121 None:intergenic 40.0%
GGTCATCTTCTTCAAGCAAA+CGG + chr4_2:61569157-61569176 Msa0613020:CDS 40.0%
TCTTCAAGCAAACGGTTTCA+TGG + chr4_2:61569165-61569184 Msa0613020:CDS 40.0%
GAGGCAACAATTTCAACTTC+CGG + chr4_2:61569317-61569336 Msa0613020:CDS 40.0%
CTTCATCTGTTGGGTGGAAT+CGG - chr4_2:61567846-61567865 None:intergenic 45.0%
TCATACTTGGGAGTTCCCAT+GGG - chr4_2:61567957-61567976 None:intergenic 45.0%
TTCATACTTGGGAGTTCCCA+TGG - chr4_2:61567958-61567977 None:intergenic 45.0%
!!! CAAGTTTTGGGGAACAAGAG+TGG + chr4_2:61568137-61568156 Msa0613020:CDS 45.0%
!!! AGTGGTACTTTTTCAGCCCA+AGG + chr4_2:61568155-61568174 Msa0613020:CDS 45.0%
!!! GTGGTACTTTTTCAGCCCAA+GGG + chr4_2:61568156-61568175 Msa0613020:CDS 45.0%
CTATTAGGCCTTGCTCCATT+TGG - chr4_2:61568193-61568212 None:intergenic 45.0%
CAAATGGAGCAAGGCCTAAT+AGG + chr4_2:61568191-61568210 Msa0613020:CDS 45.0%
! CTAATAGGGCTGCTACTTCT+GGG + chr4_2:61568206-61568225 Msa0613020:CDS 45.0%
!! TCTGGGTATTGGAAAGCTAC+TGG + chr4_2:61568223-61568242 Msa0613020:CDS 45.0%
TAAATGTGTTGGGGTCGTGT+CGG + chr4_2:61568706-61568725 Msa0613020:intron 45.0%
GGACACCTCTAATATGAGGA+GGG + chr4_2:61568736-61568755 Msa0613020:intron 45.0%
TGATCCATTAAGAGTGGCCT+TGG - chr4_2:61568898-61568917 None:intergenic 45.0%
TGTGACACAAACTCAAAGGG+TGG + chr4_2:61569051-61569070 Msa0613020:CDS 45.0%
TTGCTTGAAGAAGATGACCC+TGG - chr4_2:61569156-61569175 None:intergenic 45.0%
! AAGTTGTGTTTGGTGGAAGC+TGG - chr4_2:61569254-61569273 None:intergenic 45.0%
ATTCTTGGGTCTGTTGGAGA+TGG + chr4_2:61569288-61569307 Msa0613020:CDS 45.0%
CTGTTGGAGATGGTGTAATG+AGG + chr4_2:61569298-61569317 Msa0613020:CDS 45.0%
CTTCATCTGTTGGGTGGAAT+CGG - chr4_2:61567846-61567865 None:intergenic 45.0%
TCATACTTGGGAGTTCCCAT+GGG - chr4_2:61567957-61567976 None:intergenic 45.0%
TTCATACTTGGGAGTTCCCA+TGG - chr4_2:61567958-61567977 None:intergenic 45.0%
!!! CAAGTTTTGGGGAACAAGAG+TGG + chr4_2:61568137-61568156 Msa0613020:CDS 45.0%
!!! AGTGGTACTTTTTCAGCCCA+AGG + chr4_2:61568155-61568174 Msa0613020:CDS 45.0%
!!! GTGGTACTTTTTCAGCCCAA+GGG + chr4_2:61568156-61568175 Msa0613020:CDS 45.0%
CTATTAGGCCTTGCTCCATT+TGG - chr4_2:61568193-61568212 None:intergenic 45.0%
CAAATGGAGCAAGGCCTAAT+AGG + chr4_2:61568191-61568210 Msa0613020:CDS 45.0%
! CTAATAGGGCTGCTACTTCT+GGG + chr4_2:61568206-61568225 Msa0613020:CDS 45.0%
!! TCTGGGTATTGGAAAGCTAC+TGG + chr4_2:61568223-61568242 Msa0613020:CDS 45.0%
TAAATGTGTTGGGGTCGTGT+CGG + chr4_2:61568706-61568725 Msa0613020:intron 45.0%
GGACACCTCTAATATGAGGA+GGG + chr4_2:61568736-61568755 Msa0613020:intron 45.0%
TGATCCATTAAGAGTGGCCT+TGG - chr4_2:61568898-61568917 None:intergenic 45.0%
TGTGACACAAACTCAAAGGG+TGG + chr4_2:61569051-61569070 Msa0613020:CDS 45.0%
TTGCTTGAAGAAGATGACCC+TGG - chr4_2:61569156-61569175 None:intergenic 45.0%
! AAGTTGTGTTTGGTGGAAGC+TGG - chr4_2:61569254-61569273 None:intergenic 45.0%
ATTCTTGGGTCTGTTGGAGA+TGG + chr4_2:61569288-61569307 Msa0613020:CDS 45.0%
CTGTTGGAGATGGTGTAATG+AGG + chr4_2:61569298-61569317 Msa0613020:CDS 45.0%
!!! TTTTTTTTTTTTTTTGTTAT+AGG + chr4_2:61568109-61568128 Msa0613020:intron 5.0%
!!! TTTTTTTTTTTTTTTGTTAT+AGG + chr4_2:61568109-61568128 Msa0613020:intron 5.0%
CGAGTTCTTCATCTGTTGGG+TGG - chr4_2:61567852-61567871 None:intergenic 50.0%
CCAGAAGTAGCAGCCCTATT+AGG - chr4_2:61568208-61568227 None:intergenic 50.0%
! CCTAATAGGGCTGCTACTTC+TGG + chr4_2:61568205-61568224 Msa0613020:CDS 50.0%
TATGGAGGGAAGCCACCAAA+AGG + chr4_2:61568313-61568332 Msa0613020:CDS 50.0%
CACGGGACACCTCTAATATG+AGG + chr4_2:61568732-61568751 Msa0613020:intron 50.0%
GGGACACCTCTAATATGAGG+AGG + chr4_2:61568735-61568754 Msa0613020:intron 50.0%
ACGGACCCTCCTCATATTAG+AGG - chr4_2:61568744-61568763 None:intergenic 50.0%
! CATTAAGAGTGGCCTTGGCA+TGG - chr4_2:61568893-61568912 None:intergenic 50.0%
CATGCCAAGGCCACTCTTAA+TGG + chr4_2:61568891-61568910 Msa0613020:CDS 50.0%
TGGAATGAAACAGGGTCACC+AGG + chr4_2:61569135-61569154 Msa0613020:CDS 50.0%
GGAATGAAACAGGGTCACCA+GGG + chr4_2:61569136-61569155 Msa0613020:CDS 50.0%
CGAGTTCTTCATCTGTTGGG+TGG - chr4_2:61567852-61567871 None:intergenic 50.0%
CCAGAAGTAGCAGCCCTATT+AGG - chr4_2:61568208-61568227 None:intergenic 50.0%
! CCTAATAGGGCTGCTACTTC+TGG + chr4_2:61568205-61568224 Msa0613020:CDS 50.0%
TATGGAGGGAAGCCACCAAA+AGG + chr4_2:61568313-61568332 Msa0613020:CDS 50.0%
CACGGGACACCTCTAATATG+AGG + chr4_2:61568732-61568751 Msa0613020:intron 50.0%
GGGACACCTCTAATATGAGG+AGG + chr4_2:61568735-61568754 Msa0613020:intron 50.0%
ACGGACCCTCCTCATATTAG+AGG - chr4_2:61568744-61568763 None:intergenic 50.0%
! CATTAAGAGTGGCCTTGGCA+TGG - chr4_2:61568893-61568912 None:intergenic 50.0%
CATGCCAAGGCCACTCTTAA+TGG + chr4_2:61568891-61568910 Msa0613020:CDS 50.0%
TGGAATGAAACAGGGTCACC+AGG + chr4_2:61569135-61569154 Msa0613020:CDS 50.0%
GGAATGAAACAGGGTCACCA+GGG + chr4_2:61569136-61569155 Msa0613020:CDS 50.0%
AGCTGCTTCTGCACCTCTTC+CGG + chr4_2:61567894-61567913 Msa0613020:CDS 55.0%
GCTATGATGGCTACCGGAAG+AGG - chr4_2:61567910-61567929 None:intergenic 55.0%
! GGGCTGCTACTTCTGGGTAT+TGG + chr4_2:61568212-61568231 Msa0613020:CDS 55.0%
GGATGATCAGAAGGCAGAGG+AGG - chr4_2:61568424-61568443 None:intergenic 55.0%
GGAGGATGATCAGAAGGCAG+AGG - chr4_2:61568427-61568446 None:intergenic 55.0%
GCAACAGTAGCACCATGCCA+AGG + chr4_2:61568878-61568897 Msa0613020:CDS 55.0%
AGCTGCTTCTGCACCTCTTC+CGG + chr4_2:61567894-61567913 Msa0613020:CDS 55.0%
GCTATGATGGCTACCGGAAG+AGG - chr4_2:61567910-61567929 None:intergenic 55.0%
! GGGCTGCTACTTCTGGGTAT+TGG + chr4_2:61568212-61568231 Msa0613020:CDS 55.0%
GGATGATCAGAAGGCAGAGG+AGG - chr4_2:61568424-61568443 None:intergenic 55.0%
GGAGGATGATCAGAAGGCAG+AGG - chr4_2:61568427-61568446 None:intergenic 55.0%
GCAACAGTAGCACCATGCCA+AGG + chr4_2:61568878-61568897 Msa0613020:CDS 55.0%
TCGGAACCCTGGTGGTAGGT+GGG - chr4_2:61567827-61567846 None:intergenic 60.0%
ATCGGAACCCTGGTGGTAGG+TGG - chr4_2:61567828-61567847 None:intergenic 60.0%
GGAATCGGAACCCTGGTGGT+AGG - chr4_2:61567831-61567850 None:intergenic 60.0%
GTTGGGTGGAATCGGAACCC+TGG - chr4_2:61567838-61567857 None:intergenic 60.0%
TCGGAACCCTGGTGGTAGGT+GGG - chr4_2:61567827-61567846 None:intergenic 60.0%
ATCGGAACCCTGGTGGTAGG+TGG - chr4_2:61567828-61567847 None:intergenic 60.0%
GGAATCGGAACCCTGGTGGT+AGG - chr4_2:61567831-61567850 None:intergenic 60.0%
GTTGGGTGGAATCGGAACCC+TGG - chr4_2:61567838-61567857 None:intergenic 60.0%
CACAGCCCCACCTACCACCA+GGG + chr4_2:61567818-61567837 Msa0613020:CDS 65.0%
CGGAACCCTGGTGGTAGGTG+GGG - chr4_2:61567826-61567845 None:intergenic 65.0%
GGGTGGAATCGGAACCCTGG+TGG - chr4_2:61567835-61567854 None:intergenic 65.0%
! TTGGGGTCGTGTCGGCGACA+CGG + chr4_2:61568714-61568733 Msa0613020:intron 65.0%
CACAGCCCCACCTACCACCA+GGG + chr4_2:61567818-61567837 Msa0613020:CDS 65.0%
CGGAACCCTGGTGGTAGGTG+GGG - chr4_2:61567826-61567845 None:intergenic 65.0%
GGGTGGAATCGGAACCCTGG+TGG - chr4_2:61567835-61567854 None:intergenic 65.0%
! TTGGGGTCGTGTCGGCGACA+CGG + chr4_2:61568714-61568733 Msa0613020:intron 65.0%
CCTGGTGGTAGGTGGGGCTG+TGG - chr4_2:61567820-61567839 None:intergenic 70.0%
CCACAGCCCCACCTACCACC+AGG + chr4_2:61567817-61567836 Msa0613020:CDS 70.0%
! TGGGGTCGTGTCGGCGACAC+GGG + chr4_2:61568715-61568734 Msa0613020:intron 70.0%
CCTGGTGGTAGGTGGGGCTG+TGG - chr4_2:61567820-61567839 None:intergenic 70.0%
CCACAGCCCCACCTACCACC+AGG + chr4_2:61567817-61567836 Msa0613020:CDS 70.0%
! TGGGGTCGTGTCGGCGACAC+GGG + chr4_2:61568715-61568734 Msa0613020:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 61567787 61569356 61567787 ID=Msa0613020;Name=Msa0613020
chr4_2 mRNA 61567787 61569356 61567787 ID=Msa0613020-mRNA-1;Parent=Msa0613020;Name=Msa0613020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.5|0|1|1|1|3|0|347
chr4_2 exon 61567787 61567970 61567787 ID=Msa0613020-mRNA-1:exon:16768;Parent=Msa0613020-mRNA-1
chr4_2 exon 61568131 61568474 61568131 ID=Msa0613020-mRNA-1:exon:16769;Parent=Msa0613020-mRNA-1
chr4_2 exon 61568841 61569356 61568841 ID=Msa0613020-mRNA-1:exon:16770;Parent=Msa0613020-mRNA-1
chr4_2 CDS 61567787 61567970 61567787 ID=Msa0613020-mRNA-1:cds;Parent=Msa0613020-mRNA-1
chr4_2 CDS 61568131 61568474 61568131 ID=Msa0613020-mRNA-1:cds;Parent=Msa0613020-mRNA-1
chr4_2 CDS 61568841 61569356 61568841 ID=Msa0613020-mRNA-1:cds;Parent=Msa0613020-mRNA-1
Gene Sequence

>Msa0613020

ATGGACAGCACAGATTCATCATCTTGCTCTCCACAGCCCCACCTACCACCAGGGTTCCGATTCCACCCAACAGATGAAGAACTCGTTGTTCACTACCTCAAAAGAAAAGCTGCTTCTGCACCTCTTCCGGTAGCCATCATAGCAGAAATTGATCTCTACAAATTCGACCCATGGGAACTCCCAAGTAAAGCAAGTTTTGGGGAACAAGAGTGGTACTTTTTCAGCCCAAGGGATAGAAAATACCCAAATGGAGCAAGGCCTAATAGGGCTGCTACTTCTGGGTATTGGAAAGCTACTGGAACTGATAAGCCTATATTAACATCTGATGGGAATCAGAAAGTTGGAGTTAAGAAAGCACTTGTTTTTTATGGAGGGAAGCCACCAAAAGGAGTTAAAACTAATTGGATTATGCATGAGTATAGGCTCATCACTGATCATAATAACCATAATTCTTATAATGCAACTTCAAAAACTCCTCCTCTGCCTTCTGATCATCCTCCAAACAATAACAAGAAGAATTCCCTAAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTAGCACCATGCCAAGGCCACTCTTAATGGATCAATATGATGATCAAACCTATAATATGCAACAAAACTCCAAACATTCATCTTCAAGAAGCACAAGTTATGGGCTTGAAAATGATGACAATTTCTTTGATGGAATCTTAGCAAATGATCACGGAATGCAAAATGGTTGTGACACAAACTCAAAGGGTGGTAACAATAATAATGAATCATTATTCCCTATGAAACGTGCACTAAATGCATCATCACAGTTTTGGAATGAAACAGGGTCACCAGGGTCATCTTCTTCAAGCAAACGGTTTCATGGAGATCTTAATAGTAGAATAAGTAGCAATGCTGAGGAAAATAATTCATTTGTTTCACTGCTTAGCCAGCTTCCACCAAACACAACTTTTCATCAAAATTCAATTCTTGGGTCTGTTGGAGATGGTGTAATGAGGCAACAATTTCAACTTCCGGACATAAATTCGAACTAG
Protein sequence

>Msa0613020

MDSTDSSSCSPQPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDHNNHNSYNATSKTPPLPSDHPPNNNKKNSLRLDDWVLCRIYKKSNSSTMPRPLLMDQYDDQTYNMQQNSKHSSSRSTSYGLENDDNFFDGILANDHGMQNGCDTNSKGGNNNNESLFPMKRALNASSQFWNETGSPGSSSSSKRFHGDLNSRISSNAEENNSFVSLLSQLPPNTTFHQNSILGSVGDGVMRQQFQLPDINSN*