AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0613770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613770 MtrunA17_Chr4g0049541 96.703 91 3 0 1 91 1 91 1.26e-60 184
Msa0613770 MtrunA17_Chr2g0279821 75.281 89 22 0 1 89 1 89 1.99e-44 143
Msa0613770 MtrunA17_Chr5g0411691 72.527 91 24 1 1 91 1 90 9.17e-42 136
Msa0613770 MtrunA17_Chr5g0427921 78.333 60 13 0 1 60 1 60 2.88e-30 102
Msa0613770 MtrunA17_Chr3g0077501 63.158 76 28 0 1 76 1 76 3.92e-30 106
Msa0613770 MtrunA17_Chr4g0020221 60.759 79 31 0 1 79 1 79 5.03e-30 107
Msa0613770 MtrunA17_Chr5g0427401 62.338 77 27 1 1 77 1 75 8.11e-30 105
Msa0613770 MtrunA17_Chr4g0049901 57.778 90 38 0 1 90 27 116 1.41e-29 105
Msa0613770 MtrunA17_Chr8g0380021 60.759 79 31 0 1 79 17 95 1.04e-28 103
Msa0613770 MtrunA17_Chr3g0097101 64.789 71 25 0 1 71 16 86 1.34e-28 102
Msa0613770 MtrunA17_Chr5g0412461 55.682 88 39 0 1 88 1 88 1.39e-28 102
Msa0613770 MtrunA17_Chr5g0412271 55.682 88 39 0 1 88 1 88 1.81e-28 102
Msa0613770 MtrunA17_Chr2g0284911 62.667 75 28 0 1 75 16 90 6.05e-28 101
Msa0613770 MtrunA17_Chr7g0246431 66.197 71 24 0 1 71 1 71 9.95e-28 99.8
Msa0613770 MtrunA17_Chr8g0351041 66.667 69 23 0 1 69 1 69 6.46e-27 96.7
Msa0613770 MtrunA17_Chr1g0164791 64.384 73 24 1 1 71 1 73 1.53e-26 97.4
Msa0613770 MtrunA17_Chr1g0173161 66.129 62 21 0 1 62 1 62 1.68e-26 93.2
Msa0613770 MtrunA17_Chr4g0057151 60.000 75 30 0 1 75 1 75 2.00e-26 96.3
Msa0613770 MtrunA17_Chr7g0220121 59.722 72 28 1 1 71 1 72 3.16e-26 97.1
Msa0613770 MtrunA17_Chr8g0351031 65.217 69 24 0 1 69 1 69 7.32e-26 95.5
Msa0613770 MtrunA17_Chr4g0018421 60.274 73 28 1 1 72 1 73 8.07e-26 94.7
Msa0613770 MtrunA17_Chr8g0351051 56.098 82 32 1 1 78 1 82 8.42e-26 95.9
Msa0613770 MtrunA17_Chr5g0420091 54.444 90 33 3 1 85 1 87 1.44e-25 94.4
Msa0613770 MtrunA17_Chr4g0061691 56.944 72 30 1 1 71 1 72 2.32e-25 94.4
Msa0613770 MtrunA17_Chr1g0204111 59.420 69 28 0 1 69 17 85 4.49e-25 94.0
Msa0613770 MtrunA17_Chr4g0061671 48.421 95 45 2 1 91 1 95 4.88e-25 92.4
Msa0613770 MtrunA17_Chr8g0366231 58.333 72 29 1 1 71 1 72 8.18e-25 93.2
Msa0613770 MtrunA17_Chr6g0474371 61.429 70 26 1 1 69 1 70 1.11e-24 91.7
Msa0613770 MtrunA17_Chr6g0455511 52.273 88 41 1 1 87 1 88 1.15e-24 92.8
Msa0613770 MtrunA17_Chr3g0122251 61.111 72 27 1 1 71 1 72 1.72e-24 92.4
Msa0613770 MtrunA17_Chr5g0420081 56.944 72 30 1 1 71 1 72 2.51e-24 91.7
Msa0613770 MtrunA17_Chr7g0220111 51.136 88 42 1 1 87 1 88 3.07e-24 91.7
Msa0613770 MtrunA17_Chr3g0125241 54.795 73 31 1 1 71 26 98 4.99e-24 90.1
Msa0613770 MtrunA17_Chr2g0308251 56.522 69 30 0 1 69 1 69 7.03e-24 86.7
Msa0613770 MtrunA17_Chr3g0142191 50.549 91 38 2 1 84 1 91 9.62e-24 90.1
Msa0613770 MtrunA17_Chr7g0246381 63.934 61 22 0 1 61 1 61 1.05e-23 85.5
Msa0613770 MtrunA17_Chr5g0404951 54.545 77 33 1 1 75 1 77 5.88e-23 88.2
Msa0613770 MtrunA17_Chr1g0159661 52.055 73 33 1 1 71 1 73 3.61e-22 84.7
Msa0613770 MtrunA17_Chr8g0377561 62.069 58 22 0 1 58 1 58 3.85e-22 82.4
Msa0613770 MtrunA17_Chr3g0134451 50.617 81 39 1 1 80 1 81 1.81e-19 80.1
Msa0613770 MtrunA17_Chr5g0425191 62.069 58 22 0 1 58 1 58 2.38e-19 75.5
Msa0613770 MtrunA17_Chr4g0044071 58.621 58 24 0 1 58 1 58 9.99e-19 74.3
Msa0613770 MtrunA17_Chr4g0052081 47.826 69 36 0 1 69 1 69 2.03e-18 75.1
Msa0613770 MtrunA17_Chr1g0166611 66.667 48 16 0 13 60 17 64 2.45e-18 73.9
Msa0613770 MtrunA17_Chr3g0099421 51.471 68 33 0 2 69 34 101 3.36e-18 76.3
Msa0613770 MtrunA17_Chr5g0419601 47.945 73 38 0 1 73 8 80 4.30e-18 75.5
Msa0613770 MtrunA17_Chr8g0357771 47.826 69 36 0 1 69 1 69 5.14e-18 73.9
Msa0613770 MtrunA17_Chr1g0175611 48.611 72 37 0 1 72 1 72 8.00e-18 73.2
Msa0613770 MtrunA17_Chr4g0052061 47.826 69 36 0 1 69 1 69 9.22e-18 72.8
Msa0613770 MtrunA17_Chr2g0317481 41.772 79 46 0 2 80 9 87 1.26e-17 74.3
Msa0613770 MtrunA17_Chr2g0317451 41.772 79 46 0 2 80 9 87 1.27e-17 74.3
Msa0613770 MtrunA17_Chr1g0208561 42.308 78 45 0 2 79 9 86 1.69e-17 73.6
Msa0613770 MtrunA17_Chr2g0292791 48.529 68 35 0 2 69 9 76 2.28e-17 73.6
Msa0613770 MtrunA17_Chr3g0089141 42.308 78 45 0 2 79 9 86 2.32e-17 73.2
Msa0613770 MtrunA17_Chr1g0180591 46.377 69 37 0 1 69 1 69 2.60e-17 72.4
Msa0613770 MtrunA17_Chr2g0325971 45.833 72 39 0 2 73 9 80 3.28e-17 72.8
Msa0613770 MtrunA17_Chr1g0206701 47.059 68 36 0 2 69 9 76 3.66e-17 73.2
Msa0613770 MtrunA17_Chr8g0355091 47.059 68 36 0 2 69 9 76 3.74e-17 72.8
Msa0613770 MtrunA17_Chr8g0376821 47.826 69 36 0 1 69 1 69 3.84e-17 72.0
Msa0613770 MtrunA17_Chr3g0099411 47.059 68 36 0 2 69 9 76 3.98e-17 72.4
Msa0613770 MtrunA17_Chr5g0422421 48.529 68 35 0 2 69 9 76 5.18e-17 72.4
Msa0613770 MtrunA17_Chr1g0206721 47.059 68 36 0 2 69 9 76 5.46e-17 72.4
Msa0613770 MtrunA17_Chr1g0169761 47.826 69 36 0 1 69 1 69 8.07e-17 70.9
Msa0613770 MtrunA17_Chr1g0188671 45.588 68 37 0 2 69 47 114 1.33e-16 72.0
Msa0613770 MtrunA17_Chr1g0206991 47.059 68 36 0 2 69 9 76 1.35e-16 70.5
Msa0613770 MtrunA17_Chr1g0149391 47.059 68 36 0 2 69 9 76 1.57e-16 71.2
Msa0613770 MtrunA17_Chr3g0119901 38.889 90 44 1 1 79 8 97 1.61e-16 70.9
Msa0613770 MtrunA17_Chr1g0187361 47.059 68 36 0 2 69 9 76 1.78e-16 71.2
Msa0613770 MtrunA17_Chr5g0422941 45.588 68 37 0 2 69 9 76 2.02e-16 70.9
Msa0613770 MtrunA17_Chr1g0175601 47.826 69 36 0 1 69 1 69 2.81e-16 69.7
Msa0613770 MtrunA17_Chr4g0074101 44.928 69 38 0 1 69 1 69 3.40e-16 69.7
Msa0613770 MtrunA17_Chr1g0208581 43.056 72 41 0 2 73 9 80 3.76e-16 70.1
Msa0613770 MtrunA17_Chr2g0333981 44.928 69 38 0 1 69 11 79 4.08e-16 68.9
Msa0613770 MtrunA17_Chr3g0085241 36.364 99 52 1 1 88 40 138 9.23e-16 69.3
Msa0613770 MtrunA17_Chr8g0379021 44.118 68 38 0 2 69 12 79 1.11e-15 68.2
Msa0613770 MtrunA17_Chr8g0356071 43.478 69 39 0 1 69 1 69 1.63e-15 67.4
Msa0613770 MtrunA17_Chr4g0060841 45.946 74 38 1 1 72 1 74 2.76e-15 68.9
Msa0613770 MtrunA17_Chr4g0018951 47.273 55 29 0 15 69 25 79 5.38e-15 65.9
Msa0613770 MtrunA17_Chr2g0300441 37.363 91 44 2 2 79 7 97 5.46e-15 67.4
Msa0613770 MtrunA17_Chr5g0417661 54.717 53 24 0 1 53 56 108 1.58e-14 63.9
Msa0613770 MtrunA17_Chr3g0089151 39.706 68 41 0 2 69 9 76 3.09e-14 63.2
Msa0613770 MtrunA17_Chr3g0111841 45.000 60 33 0 7 66 1 60 4.62e-14 61.2
Msa0613770 MtrunA17_Chr2g0300421 38.462 78 48 0 2 79 9 86 1.12e-13 62.8
Msa0613770 MtrunA17_Chr1g0187351 44.068 59 33 0 11 69 1 59 2.48e-13 59.3
Msa0613770 MtrunA17_Chr1g0206691 44.068 59 33 0 11 69 1 59 2.95e-13 62.4
Msa0613770 MtrunA17_Chr4g0071601 46.377 69 37 0 1 69 11 79 9.26e-13 60.5
Msa0613770 MtrunA17_Chr6g0449851 52.941 51 24 0 1 51 1 51 6.11e-12 59.7
Msa0613770 MtrunA17_Chr6g0457851 50.980 51 25 0 1 51 11 61 1.38e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613770 AT4G37940.3 70.330 91 27 0 1 91 1 91 9.21e-42 135
Msa0613770 AT2G14210.1 70.652 92 26 1 1 91 1 92 2.13e-41 135
Msa0613770 AT2G14210.2 70.652 92 26 1 1 91 1 92 2.83e-41 135
Msa0613770 AT4G37940.4 70.330 91 27 0 1 91 1 91 4.99e-41 134
Msa0613770 AT4G37940.1 70.330 91 27 0 1 91 1 91 5.09e-41 134
Msa0613770 AT3G57230.2 64.045 89 32 0 1 89 1 89 1.05e-37 123
Msa0613770 AT2G22630.1 63.736 91 33 0 1 91 1 91 8.15e-37 124
Msa0613770 AT2G22630.2 63.736 91 33 0 1 91 1 91 8.15e-37 124
Msa0613770 AT3G57230.1 64.045 89 32 0 1 89 1 89 3.52e-36 122
Msa0613770 AT3G57230.4 64.045 89 32 0 1 89 1 89 3.52e-36 122
Msa0613770 AT5G62165.14 64.474 76 27 0 1 76 1 76 1.37e-30 104
Msa0613770 AT2G22540.3 59.091 88 36 0 1 88 1 88 1.50e-30 108
Msa0613770 AT2G22540.1 59.091 88 36 0 1 88 1 88 1.50e-30 108
Msa0613770 AT5G62165.17 64.474 76 27 0 1 76 1 76 3.09e-30 105
Msa0613770 AT5G62165.12 64.474 76 27 0 1 76 1 76 3.09e-30 105
Msa0613770 AT5G62165.11 64.474 76 27 0 1 76 1 76 3.09e-30 105
Msa0613770 AT5G62165.6 64.474 76 27 0 1 76 1 76 5.81e-30 104
Msa0613770 AT5G62165.9 64.474 76 27 0 1 76 1 76 5.81e-30 104
Msa0613770 AT5G62165.7 64.474 76 27 0 1 76 1 76 5.81e-30 104
Msa0613770 AT5G62165.8 64.474 76 27 0 1 76 1 76 5.81e-30 104
Msa0613770 AT5G62165.13 64.474 76 27 0 1 76 1 76 5.81e-30 104
Msa0613770 AT3G57390.3 68.116 69 22 0 1 69 1 69 1.11e-29 105
Msa0613770 AT5G62165.10 64.474 76 27 0 1 76 1 76 1.13e-29 104
Msa0613770 AT5G62165.4 64.474 76 27 0 1 76 1 76 1.13e-29 104
Msa0613770 AT5G62165.3 64.474 76 27 0 1 76 1 76 1.22e-29 105
Msa0613770 AT5G62165.1 64.474 76 27 0 1 76 1 76 1.22e-29 105
Msa0613770 AT5G62165.2 64.474 76 27 0 1 76 1 76 1.22e-29 105
Msa0613770 AT4G09960.2 64.000 75 27 0 1 75 1 75 1.70e-29 104
Msa0613770 AT3G57390.1 68.116 69 22 0 1 69 1 69 2.12e-29 105
Msa0613770 AT4G09960.1 64.000 75 27 0 1 75 1 75 2.37e-29 104
Msa0613770 AT4G09960.6 64.000 75 27 0 1 75 2 76 2.40e-29 104
Msa0613770 AT4G09960.5 64.000 75 27 0 1 75 11 85 3.36e-29 104
Msa0613770 AT5G51870.2 57.647 85 36 0 1 85 1 85 3.92e-29 102
Msa0613770 AT4G09960.3 64.000 75 27 0 1 75 27 101 4.93e-29 104
Msa0613770 AT4G18960.1 62.667 75 28 0 2 76 18 92 5.93e-29 104
Msa0613770 AT2G42830.2 58.537 82 31 1 1 82 16 94 7.05e-29 103
Msa0613770 AT2G42830.1 58.537 82 31 1 1 82 16 94 7.45e-29 103
Msa0613770 AT3G58780.1 58.537 82 31 1 1 82 16 94 7.69e-29 103
Msa0613770 AT5G51870.5 57.647 85 36 0 1 85 24 108 8.16e-29 102
Msa0613770 AT5G51870.1 57.647 85 36 0 1 85 1 85 8.98e-29 102
Msa0613770 AT3G58780.5 58.537 82 31 1 1 82 22 100 9.19e-29 103
Msa0613770 AT5G51870.4 57.647 85 36 0 1 85 1 85 1.25e-28 102
Msa0613770 AT4G09960.4 64.000 75 27 0 1 75 96 170 1.59e-28 104
Msa0613770 AT5G51870.3 57.647 85 36 0 1 85 11 95 1.64e-28 102
Msa0613770 AT3G58780.4 58.537 82 31 1 1 82 16 94 1.76e-28 103
Msa0613770 AT2G45660.2 64.000 75 27 0 1 75 1 75 2.72e-28 100
Msa0613770 AT4G22950.2 52.688 93 34 1 1 83 1 93 8.47e-28 99.4
Msa0613770 AT2G45660.1 64.000 75 27 0 1 75 1 75 1.03e-27 100
Msa0613770 AT2G45650.1 63.380 71 26 0 1 71 1 71 1.64e-27 100
Msa0613770 AT5G13790.2 63.768 69 25 0 1 69 1 69 1.88e-27 100
Msa0613770 AT5G13790.1 63.768 69 25 0 1 69 1 69 1.97e-27 100
Msa0613770 AT4G22950.3 52.688 93 34 1 1 83 1 93 3.85e-27 99.0
Msa0613770 AT4G22950.1 52.688 93 34 1 1 83 1 93 3.85e-27 99.0
Msa0613770 AT4G24540.1 53.659 82 38 0 1 82 1 82 4.25e-27 99.0
Msa0613770 AT2G22540.2 56.818 88 33 1 1 88 1 83 1.40e-26 97.8
Msa0613770 AT4G11880.2 61.842 76 28 1 1 75 1 76 2.50e-26 95.9
Msa0613770 AT4G11880.3 61.842 76 28 1 1 75 1 76 2.50e-26 95.9
Msa0613770 AT4G11880.4 61.842 76 28 1 1 75 1 76 3.73e-26 96.3
Msa0613770 AT4G11880.1 61.842 76 28 1 1 75 1 76 3.73e-26 96.3
Msa0613770 AT5G51860.2 63.768 69 25 0 1 69 1 69 7.98e-26 95.1
Msa0613770 AT5G23260.3 60.241 83 27 3 1 77 1 83 8.00e-26 95.9
Msa0613770 AT5G23260.2 60.241 83 27 3 1 77 1 83 9.17e-26 96.3
Msa0613770 AT5G51860.1 63.768 69 25 0 1 69 1 69 1.05e-25 95.1
Msa0613770 AT5G23260.4 60.241 83 27 3 1 77 17 99 1.25e-25 96.3
Msa0613770 AT5G23260.1 60.241 83 27 3 1 77 17 99 1.27e-25 95.9
Msa0613770 AT1G26310.1 54.217 83 37 1 1 82 1 83 2.51e-25 95.1
Msa0613770 AT3G30260.1 52.326 86 40 1 1 85 1 86 3.25e-25 94.7
Msa0613770 AT5G60910.1 58.333 72 29 1 1 71 1 72 4.49e-25 94.0
Msa0613770 AT1G24260.3 54.118 85 35 2 1 84 1 82 5.85e-25 93.6
Msa0613770 AT1G24260.1 54.118 85 35 2 1 84 1 82 7.52e-25 93.6
Msa0613770 AT1G24260.2 54.118 85 35 2 1 84 1 82 7.67e-25 93.6
Msa0613770 AT5G20240.2 58.108 74 29 1 1 72 1 74 9.05e-25 90.9
Msa0613770 AT1G69120.2 50.602 83 40 1 1 82 1 83 1.90e-24 92.4
Msa0613770 AT5G20240.1 58.108 74 29 1 1 72 1 74 2.46e-24 91.3
Msa0613770 AT1G69120.1 50.602 83 40 1 1 82 1 83 3.61e-24 92.0
Msa0613770 AT3G61120.1 59.420 69 28 0 1 69 1 69 3.94e-24 91.7
Msa0613770 AT3G02310.2 59.722 72 28 1 1 71 1 72 4.42e-24 90.5
Msa0613770 AT3G58780.2 54.878 82 27 2 1 82 16 87 5.07e-24 91.3
Msa0613770 AT2G03710.3 50.588 85 37 2 1 83 1 82 5.30e-24 90.1
Msa0613770 AT5G15800.1 59.722 72 28 1 1 71 1 72 7.63e-24 91.3
Msa0613770 AT3G58780.3 64.516 62 22 0 1 62 16 77 9.52e-24 91.3
Msa0613770 AT5G15800.2 59.722 72 28 1 1 71 1 72 1.03e-23 90.9
Msa0613770 AT3G02310.1 59.722 72 28 1 1 71 1 72 1.43e-23 90.5
Msa0613770 AT2G03710.2 49.438 89 40 2 1 87 1 86 1.92e-23 90.1
Msa0613770 AT2G03710.1 49.438 89 40 2 1 87 1 86 2.18e-23 90.1
Msa0613770 AT5G10140.2 51.220 82 39 1 1 81 1 82 3.31e-23 87.4
Msa0613770 AT1G71692.1 55.556 72 31 1 1 71 1 72 4.00e-23 88.6
Msa0613770 AT5G10140.4 51.220 82 39 1 1 81 1 82 4.41e-23 87.4
Msa0613770 AT5G10140.3 51.220 82 39 1 1 81 1 82 5.32e-23 87.4
Msa0613770 AT5G65060.2 48.352 91 46 1 1 90 1 91 5.74e-23 87.4
Msa0613770 AT5G10140.1 51.220 82 39 1 1 81 1 82 5.78e-23 87.8
Msa0613770 AT5G65060.3 48.352 91 46 1 1 90 1 91 7.31e-23 87.4
Msa0613770 AT5G65060.1 48.352 91 46 1 1 90 1 91 7.73e-23 87.4
Msa0613770 AT5G65070.4 51.220 82 39 1 1 81 1 82 1.28e-22 85.5
Msa0613770 AT3G54340.1 63.934 61 22 0 1 61 1 61 1.69e-22 87.4
Msa0613770 AT5G65070.1 51.220 82 39 1 1 81 1 82 3.06e-22 85.9
Msa0613770 AT5G65070.5 57.143 70 29 1 1 69 1 70 1.23e-21 84.3
Msa0613770 AT5G65070.2 57.143 70 29 1 1 69 1 70 1.25e-21 85.1
Msa0613770 AT5G65080.3 52.809 89 35 3 1 87 8 91 1.33e-21 84.0
Msa0613770 AT5G65050.2 50.000 82 40 1 1 81 1 82 1.43e-21 83.6
Msa0613770 AT5G65050.5 50.000 82 40 1 1 81 1 82 2.14e-21 83.2
Msa0613770 AT5G65050.1 50.000 82 40 1 1 81 1 82 2.35e-21 83.2
Msa0613770 AT5G65050.3 50.000 82 40 1 1 81 1 82 2.56e-21 83.2
Msa0613770 AT1G31140.2 53.947 76 33 1 1 74 1 76 1.07e-20 82.0
Msa0613770 AT1G31140.1 53.947 76 33 1 1 74 1 76 1.13e-20 82.0
Msa0613770 AT5G65070.3 61.017 59 23 0 1 59 1 59 5.59e-20 80.5
Msa0613770 AT2G34440.1 45.333 75 41 0 1 75 1 75 2.09e-19 77.8
Msa0613770 AT1G77980.1 54.286 70 31 1 1 69 1 70 7.62e-19 79.0
Msa0613770 AT5G65080.2 61.017 59 23 0 1 59 8 66 9.98e-19 77.0
Msa0613770 AT3G66656.1 44.928 69 38 0 1 69 1 69 5.45e-18 74.3
Msa0613770 AT2G24840.1 49.275 69 35 0 1 69 62 130 6.62e-18 75.9
Msa0613770 AT1G77080.11 51.220 82 39 1 1 81 1 82 1.63e-17 73.2
Msa0613770 AT1G77080.5 47.253 91 47 1 1 90 1 91 2.05e-17 72.8
Msa0613770 AT1G22130.1 48.750 80 40 1 1 79 1 80 2.25e-17 75.1
Msa0613770 AT1G77080.4 51.220 82 39 1 1 81 1 82 2.47e-17 73.2
Msa0613770 AT1G77080.8 51.220 82 39 1 1 81 1 82 4.38e-17 72.8
Msa0613770 AT1G72350.1 52.941 68 30 1 2 69 43 108 6.36e-17 72.4
Msa0613770 AT1G77950.3 48.571 70 35 1 1 69 1 70 1.49e-16 72.0
Msa0613770 AT1G77950.2 48.571 70 35 1 1 69 1 70 1.49e-16 72.0
Msa0613770 AT1G77950.1 48.571 70 35 1 1 69 1 70 1.49e-16 72.0
Msa0613770 AT1G77950.4 48.571 70 35 1 1 69 1 70 1.49e-16 72.0
Msa0613770 AT2G26320.1 45.070 71 37 1 1 69 17 87 5.79e-16 67.4
Msa0613770 AT1G77080.12 61.017 59 23 0 1 59 1 59 8.47e-16 68.2
Msa0613770 AT1G77080.2 61.017 59 23 0 1 59 1 59 1.60e-15 68.2
Msa0613770 AT5G60440.1 42.683 82 44 1 2 80 7 88 2.84e-15 68.9
Msa0613770 AT1G18750.1 44.595 74 39 1 1 72 1 74 5.70e-15 68.6
Msa0613770 AT1G18750.3 44.595 74 39 1 1 72 1 74 6.09e-15 68.6
Msa0613770 AT1G18750.4 44.595 74 39 1 1 72 1 74 6.42e-15 68.6
Msa0613770 AT4G36590.1 43.210 81 42 1 2 78 7 87 6.83e-15 67.4
Msa0613770 AT1G69540.1 56.604 53 23 0 1 53 1 53 1.78e-14 67.0
Msa0613770 AT3G04100.1 41.791 67 39 0 2 68 14 80 1.87e-14 65.9
Msa0613770 AT2G03060.3 45.946 74 38 1 1 72 1 74 1.98e-14 67.0
Msa0613770 AT2G03060.7 45.946 74 38 1 1 72 1 74 1.98e-14 67.0
Msa0613770 AT2G03060.1 45.946 74 38 1 1 72 1 74 1.98e-14 67.0
Msa0613770 AT1G69540.2 56.604 53 23 0 1 53 1 53 2.08e-14 67.0
Msa0613770 AT1G28460.1 47.059 68 36 0 2 69 8 75 2.44e-14 65.1
Msa0613770 AT2G03060.2 45.946 74 38 1 1 72 1 74 2.77e-14 66.6
Msa0613770 AT4G37435.1 45.714 70 37 1 1 69 1 70 3.83e-14 64.7
Msa0613770 AT1G29962.1 45.588 68 37 0 2 69 8 75 5.52e-14 63.9
Msa0613770 AT1G01530.1 41.791 67 39 0 1 67 6 72 7.22e-14 64.7
Msa0613770 AT1G47760.1 42.647 68 39 0 1 68 1 68 1.16e-13 63.2
Msa0613770 AT1G65360.1 34.177 79 52 0 1 79 6 84 2.86e-13 62.8
Msa0613770 AT1G28450.1 42.647 68 39 0 2 69 8 75 2.86e-11 57.0

Find 15 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATGACTATGCAAGTTCC+AGG 0.390086 4_2:-62649325 Msa0613770:intron
ACTTTCTCAAAGAGAAGAAA+AGG 0.421236 4_2:-62649428 Msa0613770:CDS
TCTTTGAGAAAGTCACTTGA+CGG 0.458185 4_2:+62649438 None:intergenic
TCAAGCAATGGATCCTACTT+TGG 0.468684 4_2:-62645160 Msa0613770:CDS
AACTTGTGCATCACAAAGAA+TGG 0.480043 4_2:+62649379 None:intergenic
ATTCTTTGTGATGCACAAGT+TGG 0.486752 4_2:-62649377 Msa0613770:CDS
GAGGAAAGATTGTGATTCGA+AGG 0.502771 4_2:-62649478 Msa0613770:CDS
ATTACCTTGAGTTCCAAAGT+AGG 0.526581 4_2:+62645147 None:intergenic
GGATCCTACTTTGGAACTCA+AGG 0.536262 4_2:-62645151 Msa0613770:intron
TAGGATCCATTGCTTGATGA+TGG 0.549650 4_2:+62645166 None:intergenic
GTCATAAAGCTTGTGAGTAG+AGG 0.558703 4_2:+62649340 None:intergenic
CTTTCTCAAAGAGAAGAAAA+GGG 0.568730 4_2:-62649427 Msa0613770:CDS
TAGTTAATTAAGATGGGGAG+AGG 0.586556 4_2:-62649497 None:intergenic
AGAGGACCATCATCAAGCAA+TGG 0.621274 4_2:-62645172 Msa0613770:CDS
GCGTTATAACAAGTTAGTAG+AGG 0.643614 4_2:-62645190 Msa0613770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATATTTATAAAAAAAAA+AGG + chr4_2:62648362-62648381 None:intergenic 0.0%
!!! AAAAAACTATTTATTTTTTG+AGG - chr4_2:62645375-62645394 Msa0613770:intron 10.0%
!!! AAAAACTATTTATTTTTTGA+GGG - chr4_2:62645376-62645395 Msa0613770:intron 10.0%
!! TGAACAAAAAATAAAAATAA+AGG - chr4_2:62647266-62647285 Msa0613770:intron 10.0%
!! CCTAAAAATAATTATTATAT+AGG + chr4_2:62647804-62647823 None:intergenic 10.0%
!!! CCTATATAATAATTATTTTT+AGG - chr4_2:62647801-62647820 Msa0613770:intron 10.0%
!!! TAATTATTTTACTAGTTTTT+TGG - chr4_2:62648147-62648166 Msa0613770:intron 10.0%
!! AAAAAAAAAAAATTGTGAGA+TGG - chr4_2:62645489-62645508 Msa0613770:intron 15.0%
!!! TGTAAAAATCATTTTTGTAA+GGG + chr4_2:62645581-62645600 None:intergenic 15.0%
!!! ATGTAAAAATCATTTTTGTA+AGG + chr4_2:62645582-62645601 None:intergenic 15.0%
!! ATATGTATTTCAAAACTTAT+CGG - chr4_2:62646154-62646173 Msa0613770:intron 15.0%
!! TATTAAAAAAAAAATCAGCT+TGG - chr4_2:62646630-62646649 Msa0613770:intron 15.0%
!!! TTTTACATTGTTTTATTCTT+TGG + chr4_2:62646838-62646857 None:intergenic 15.0%
!! ATTATTATATAGGCAAAAAT+CGG + chr4_2:62647794-62647813 None:intergenic 15.0%
!! CTTATTTATGAGAATATTTA+AGG + chr4_2:62647837-62647856 None:intergenic 15.0%
!!! TCTTTAAAAAAACAAAGTTA+TGG + chr4_2:62648212-62648231 None:intergenic 15.0%
!! AAAAGTTACATAATAAGTTA+TGG + chr4_2:62648287-62648306 None:intergenic 15.0%
!!! ATATTATGTAACTTTTTAAG+AGG - chr4_2:62648319-62648338 Msa0613770:intron 15.0%
!! AAAAAAAAAGGAAAAGAAAA+AGG + chr4_2:62648350-62648369 None:intergenic 15.0%
!! ATTCATGATGATATATATAA+GGG + chr4_2:62648893-62648912 None:intergenic 15.0%
!!! TAACCTTTTACAATTTTTTT+TGG + chr4_2:62648920-62648939 None:intergenic 15.0%
!!! AAAATTAGTTCTTATTGATC+AGG - chr4_2:62645145-62645164 Msa0613770:intron 20.0%
!!! AAATTAGTTCTTATTGATCA+GGG - chr4_2:62645146-62645165 Msa0613770:intron 20.0%
!! AAAAAAATCGCAAAACAAAT+GGG - chr4_2:62645699-62645718 Msa0613770:intron 20.0%
!! TGTGATTGTATAACTTAAAT+AGG + chr4_2:62645918-62645937 None:intergenic 20.0%
!! TTTAATACATAGATATTCCA+TGG + chr4_2:62645947-62645966 None:intergenic 20.0%
!!! ACAGTTATTAGAGTAAATTT+TGG - chr4_2:62646297-62646316 Msa0613770:intron 20.0%
!!! CAGTTATTAGAGTAAATTTT+GGG - chr4_2:62646298-62646317 Msa0613770:intron 20.0%
!!! AAGTTTAAAGTATTTCTAAC+TGG - chr4_2:62646949-62646968 Msa0613770:intron 20.0%
!! TTTACAATACTAGGTTATAT+GGG - chr4_2:62647016-62647035 Msa0613770:intron 20.0%
!! TCAAATGTGTATGTATTATA+TGG - chr4_2:62647999-62648018 Msa0613770:intron 20.0%
!!! CAAAGTTATGGAATTTTTTT+AGG + chr4_2:62648200-62648219 None:intergenic 20.0%
!!! AAATTCCGTAACTTTTTTTT+TGG - chr4_2:62648232-62648251 Msa0613770:intron 20.0%
!!! AATAAGTTATGGAATTTTCT+GGG + chr4_2:62648276-62648295 None:intergenic 20.0%
!!! TAATAAGTTATGGAATTTTC+TGG + chr4_2:62648277-62648296 None:intergenic 20.0%
!!! TTATGTAACTTTTTGTTTTG+AGG - chr4_2:62648294-62648313 Msa0613770:intron 20.0%
!! AAAGAAGTTACATTAAAAGA+TGG - chr4_2:62648419-62648438 Msa0613770:intron 20.0%
!! ATTTGTCTTACTATTTAGTT+GGG + chr4_2:62648556-62648575 None:intergenic 20.0%
!! TATTTGTCTTACTATTTAGT+TGG + chr4_2:62648557-62648576 None:intergenic 20.0%
!!! AAGACAAATAATGAAGTATT+TGG - chr4_2:62648567-62648586 Msa0613770:intron 20.0%
!! AATGTAATGTAATGTTATGA+GGG - chr4_2:62648719-62648738 Msa0613770:intron 20.0%
!! CATTCATGATGATATATATA+AGG + chr4_2:62648894-62648913 None:intergenic 20.0%
!! ATGCCAAAAAAAATTGTAAA+AGG - chr4_2:62648914-62648933 Msa0613770:intron 20.0%
!!! TGTATATATCCATAGATTTT+AGG - chr4_2:62649283-62649302 Msa0613770:intron 20.0%
!!! TTAATTTGTACAACTTGTAA+TGG - chr4_2:62649338-62649357 Msa0613770:CDS 20.0%
! ACAAATCGCAGTAAAATAAA+GGG + chr4_2:62645078-62645097 None:intergenic 25.0%
! ATTGTACACAATATATATGC+AGG + chr4_2:62645178-62645197 None:intergenic 25.0%
! TCTAGTGTTTACTATACTTA+CGG - chr4_2:62645297-62645316 Msa0613770:intron 25.0%
!!! ACTATTTATTTTTTGACTCC+CGG - chr4_2:62645407-62645426 Msa0613770:intron 25.0%
! AAAATCATTGAAAATTGTCC+CGG + chr4_2:62645429-62645448 None:intergenic 25.0%
! AATAAAGTGAACAATTGTGA+TGG - chr4_2:62645454-62645473 Msa0613770:intron 25.0%
! ATGGAGAGAAAATAAAATGT+TGG - chr4_2:62645508-62645527 Msa0613770:intron 25.0%
! GAAAAAAATCGCAAAACAAA+TGG - chr4_2:62645698-62645717 Msa0613770:intron 25.0%
! AAAAAATCGCAAAACAAATG+GGG - chr4_2:62645700-62645719 Msa0613770:intron 25.0%
! CATACACAATTACAAATTCT+CGG - chr4_2:62645763-62645782 Msa0613770:intron 25.0%
! CCTAACAATATTGATATTGT+CGG - chr4_2:62645812-62645831 Msa0613770:intron 25.0%
!!! GGTTTTTTGAGTATTTGAAT+GGG + chr4_2:62645993-62646012 None:intergenic 25.0%
!!! AGGTTTTTTGAGTATTTGAA+TGG + chr4_2:62645994-62646013 None:intergenic 25.0%
! AATTTGACTATTATTTGCTC+AGG - chr4_2:62646119-62646138 Msa0613770:intron 25.0%
! AAATAATTAAATACCGAGCA+TGG - chr4_2:62646234-62646253 Msa0613770:intron 25.0%
! AATAATTAAATACCGAGCAT+GGG - chr4_2:62646235-62646254 Msa0613770:intron 25.0%
!!! AGAAATGTGTTTGTTGTTAT+GGG + chr4_2:62646391-62646410 None:intergenic 25.0%
! AAAAAAAAATCAGCTTGGTT+TGG - chr4_2:62646635-62646654 Msa0613770:intron 25.0%
!!! CAATATTTTTTTCTCTTCGT+TGG + chr4_2:62646738-62646757 None:intergenic 25.0%
! GAATACTGTAGAATATAACA+TGG - chr4_2:62646769-62646788 Msa0613770:intron 25.0%
! TTAAACTTTATCAGTTGTGT+GGG + chr4_2:62646937-62646956 None:intergenic 25.0%
! TTTAAACTTTATCAGTTGTG+TGG + chr4_2:62646938-62646957 None:intergenic 25.0%
!! TTTAAAGTATTTCTAACTGG+AGG - chr4_2:62646952-62646971 Msa0613770:intron 25.0%
! CATATAACCTAGTATTGTAA+AGG + chr4_2:62647017-62647036 None:intergenic 25.0%
! CTTTACAATACTAGGTTATA+TGG - chr4_2:62647015-62647034 Msa0613770:intron 25.0%
! TTGAACGAGATATTTATCTT+AGG - chr4_2:62647097-62647116 Msa0613770:intron 25.0%
! GAGATATTTATCTTAGGTAT+CGG - chr4_2:62647103-62647122 Msa0613770:intron 25.0%
! ACTTATGAACTAATAGCTAA+GGG + chr4_2:62647190-62647209 None:intergenic 25.0%
! TACTTATGAACTAATAGCTA+AGG + chr4_2:62647191-62647210 None:intergenic 25.0%
! TGCACAAGATAAGTATTTAT+AGG - chr4_2:62647355-62647374 Msa0613770:intron 25.0%
! AACTGTTCTTATGTATCAAA+TGG - chr4_2:62647381-62647400 Msa0613770:intron 25.0%
! ATTCTTTCTATAGTATACTG+AGG + chr4_2:62647686-62647705 None:intergenic 25.0%
! AGAGCGAAGAAAAAATTATT+GGG + chr4_2:62647937-62647956 None:intergenic 25.0%
! TTGCACCAAAAAAAAAGTTA+CGG + chr4_2:62648240-62648259 None:intergenic 25.0%
!!! TTTTTTTTTGGTGCAAAAGA+GGG - chr4_2:62648244-62648263 Msa0613770:intron 25.0%
!! TGTACTTCATCACATTTTAT+GGG + chr4_2:62648468-62648487 None:intergenic 25.0%
!! TTGTACTTCATCACATTTTA+TGG + chr4_2:62648469-62648488 None:intergenic 25.0%
! TTTGTCTTACTATTTAGTTG+GGG + chr4_2:62648555-62648574 None:intergenic 25.0%
! AGTAATCACTGAAATAATTC+AGG + chr4_2:62648597-62648616 None:intergenic 25.0%
! GAATGTAATGTAATGTTATG+AGG - chr4_2:62648718-62648737 Msa0613770:intron 25.0%
! TGAAACAAATAGATGAGATT+TGG - chr4_2:62648831-62648850 Msa0613770:intron 25.0%
! ATCTAAATTAACACTAGTAG+TGG + chr4_2:62649061-62649080 None:intergenic 25.0%
! AATGGTTATATTTGTATCAG+TGG + chr4_2:62649106-62649125 None:intergenic 25.0%
! ACATTATAGCCTAAAATCTA+TGG + chr4_2:62649295-62649314 None:intergenic 25.0%
!! TAGATTTTAGGCTATAATGT+TGG - chr4_2:62649295-62649314 Msa0613770:intron 25.0%
!! AGATTTTAGGCTATAATGTT+GGG - chr4_2:62649296-62649315 Msa0613770:intron 25.0%
! ATTTGAATAATAACGTATGC+AGG + chr4_2:62649464-62649483 None:intergenic 25.0%
ACTTTCTCAAAGAGAAGAAA+AGG - chr4_2:62644914-62644933 Msa0613770:intron 30.0%
CTTTCTCAAAGAGAAGAAAA+GGG - chr4_2:62644915-62644934 Msa0613770:intron 30.0%
AAATGATTTGATCCTATACC+TGG + chr4_2:62645038-62645057 None:intergenic 30.0%
CACAAATCGCAGTAAAATAA+AGG + chr4_2:62645079-62645098 None:intergenic 30.0%
CAGTCTAGTAAAACTTTGAA+GGG + chr4_2:62645230-62645249 None:intergenic 30.0%
AGTATAGTAAACACTAGAGT+CGG + chr4_2:62645295-62645314 None:intergenic 30.0%
!!! CTATTTATTTTTTGACTCCC+GGG - chr4_2:62645408-62645427 Msa0613770:intron 30.0%
AAATCATTGAAAATTGTCCC+GGG + chr4_2:62645428-62645447 None:intergenic 30.0%
CCGACAATATCAATATTGTT+AGG + chr4_2:62645815-62645834 None:intergenic 30.0%
! TTGATATTGTCGGTTGAATT+AGG - chr4_2:62645822-62645841 Msa0613770:intron 30.0%
ATACAATCACAATTTCTCCA+TGG - chr4_2:62645927-62645946 Msa0613770:intron 30.0%
TGAATGGGAGAGTTATAAAT+AGG + chr4_2:62645978-62645997 None:intergenic 30.0%
!! CAGAAATGTGTTTGTTGTTA+TGG + chr4_2:62646392-62646411 None:intergenic 30.0%
GAAGATGGAGATCAATATAT+AGG + chr4_2:62646995-62647014 None:intergenic 30.0%
GATAAATATCTCGTTCAACA+AGG + chr4_2:62647095-62647114 None:intergenic 30.0%
ATCGTAATCGTTTGAAGAAA+GGG + chr4_2:62647151-62647170 None:intergenic 30.0%
TAGTTCATAAGTACTTAGCA+TGG - chr4_2:62647198-62647217 Msa0613770:intron 30.0%
!! GGTGTTAAGTATTGTGTTTT+TGG - chr4_2:62647219-62647238 Msa0613770:intron 30.0%
TATCTTGTGCAATTTCAGAA+AGG + chr4_2:62647346-62647365 None:intergenic 30.0%
! ATAAATTTTCCCTCGTTGAA+GGG - chr4_2:62647454-62647473 Msa0613770:intron 30.0%
AGCGAAGAAAAAATTATTGG+GGG + chr4_2:62647935-62647954 None:intergenic 30.0%
GAGCGAAGAAAAAATTATTG+GGG + chr4_2:62647936-62647955 None:intergenic 30.0%
CAGAGCGAAGAAAAAATTAT+TGG + chr4_2:62647938-62647957 None:intergenic 30.0%
! ACATACACATTTGAGATCTA+TGG + chr4_2:62647993-62648012 None:intergenic 30.0%
!!! CTTTTTTTTTGGTGCAAAAG+AGG - chr4_2:62648243-62648262 Msa0613770:intron 30.0%
AAAACAATTAACACATAGCG+AGG + chr4_2:62648390-62648409 None:intergenic 30.0%
!! TTTTTGAGCATCTTTTGAGA+GGG + chr4_2:62648506-62648525 None:intergenic 30.0%
!!! TTTTTTGAGCATCTTTTGAG+AGG + chr4_2:62648507-62648526 None:intergenic 30.0%
GAGTGAATTCAAATACTTTG+AGG - chr4_2:62648672-62648691 Msa0613770:intron 30.0%
TTGAGGTGAATTTCATTGTT+TGG - chr4_2:62648689-62648708 Msa0613770:intron 30.0%
GAATTTCATTGTTTGGATGA+AGG - chr4_2:62648696-62648715 Msa0613770:intron 30.0%
TGTGTTTGAATGAGGTAATT+TGG + chr4_2:62648797-62648816 None:intergenic 30.0%
TGTACAACTTGTAATGGTTT+AGG - chr4_2:62649344-62649363 Msa0613770:CDS 30.0%
! TCTTTGAGAAAGTCACTTGA+CGG + chr4_2:62644907-62644926 None:intergenic 35.0%
AACTTGTGCATCACAAAGAA+TGG + chr4_2:62644966-62644985 None:intergenic 35.0%
ATTCTTTGTGATGCACAAGT+TGG - chr4_2:62644965-62644984 Msa0613770:intron 35.0%
TTTATGACTATGCAAGTTCC+AGG - chr4_2:62645017-62645036 Msa0613770:intron 35.0%
CGCAGTAAAATAAAGGGAAA+AGG + chr4_2:62645072-62645091 None:intergenic 35.0%
GCAGTCTAGTAAAACTTTGA+AGG + chr4_2:62645231-62645250 None:intergenic 35.0%
AGGTCTTAGAGTCAAATTGA+TGG - chr4_2:62645842-62645861 Msa0613770:intron 35.0%
GGTCTTAGAGTCAAATTGAT+GGG - chr4_2:62645843-62645862 Msa0613770:intron 35.0%
TGACTATTATTTGCTCAGGT+TGG - chr4_2:62646123-62646142 Msa0613770:intron 35.0%
GTATTTCAAAACTTATCGGC+TGG - chr4_2:62646158-62646177 Msa0613770:intron 35.0%
AGTTGTGTCTCACCAATATT+GGG + chr4_2:62646207-62646226 None:intergenic 35.0%
AAGTTGTGTCTCACCAATAT+TGG + chr4_2:62646208-62646227 None:intergenic 35.0%
CCTTCAAGTAAGAAAGGAAA+AGG + chr4_2:62646507-62646526 None:intergenic 35.0%
! CCTTTTCCTTTCTTACTTGA+AGG - chr4_2:62646504-62646523 Msa0613770:intron 35.0%
ATGGAACCTTCAAGTAAGAA+AGG + chr4_2:62646513-62646532 None:intergenic 35.0%
TTTCTTACTTGAAGGTTCCA+TGG - chr4_2:62646512-62646531 Msa0613770:intron 35.0%
! AATCACAAGCAAAGTACTAG+TGG + chr4_2:62646565-62646584 None:intergenic 35.0%
TAGTACTTTGCTTGTGATTG+AGG - chr4_2:62646566-62646585 Msa0613770:intron 35.0%
AGTACTTTGCTTGTGATTGA+GGG - chr4_2:62646567-62646586 Msa0613770:intron 35.0%
!! ATGCTTGCTATTAGGATTGT+TGG - chr4_2:62646706-62646725 Msa0613770:intron 35.0%
!! TGCTTGCTATTAGGATTGTT+GGG - chr4_2:62646707-62646726 Msa0613770:intron 35.0%
! TTTGAAGAGTATACATCCGA+TGG + chr4_2:62646896-62646915 None:intergenic 35.0%
CCTAGTATTGTAAAGGAAGA+TGG + chr4_2:62647010-62647029 None:intergenic 35.0%
CCATCTTCCTTTACAATACT+AGG - chr4_2:62647007-62647026 Msa0613770:intron 35.0%
! TTGGCTGAAATTGAAGCATT+TGG + chr4_2:62647049-62647068 None:intergenic 35.0%
! ATTGATATTCGTGTTGGTGT+TGG + chr4_2:62647068-62647087 None:intergenic 35.0%
AATATCTCGTTCAACAAGGT+CGG + chr4_2:62647091-62647110 None:intergenic 35.0%
TCGTAATCGTTTGAAGAAAG+GGG + chr4_2:62647150-62647169 None:intergenic 35.0%
CATCGTAATCGTTTGAAGAA+AGG + chr4_2:62647152-62647171 None:intergenic 35.0%
CCTTGATTGACTATTTGCAT+GGG - chr4_2:62647425-62647444 Msa0613770:intron 35.0%
! CATAAATTTTCCCTCGTTGA+AGG - chr4_2:62647453-62647472 Msa0613770:intron 35.0%
! TAAATTTTCCCTCGTTGAAG+GGG - chr4_2:62647455-62647474 Msa0613770:intron 35.0%
TACATATGTGGAGTACAAGT+TGG - chr4_2:62647603-62647622 Msa0613770:intron 35.0%
GAAGACATCAAACTTAGTCA+AGG + chr4_2:62647655-62647674 None:intergenic 35.0%
!! TTTTGAGCATCTTTTGAGAG+GGG + chr4_2:62648505-62648524 None:intergenic 35.0%
TTTAACCCTTAGAGTGTGTT+TGG - chr4_2:62648616-62648635 Msa0613770:intron 35.0%
GAGGGAATTCAAATACTTTG+AGG - chr4_2:62648737-62648756 Msa0613770:intron 35.0%
! CTTAAGAGTGTGTTTGAATG+AGG + chr4_2:62648805-62648824 None:intergenic 35.0%
CTCATTCAAACACACTCTTA+AGG - chr4_2:62648803-62648822 Msa0613770:intron 35.0%
GCGTTATAACAAGTTAGTAG+AGG - chr4_2:62649152-62649171 Msa0613770:intron 35.0%
ATTACCTTGAGTTCCAAAGT+AGG + chr4_2:62649198-62649217 None:intergenic 35.0%
TCAAGGTAATACAACCATGA+GGG - chr4_2:62649208-62649227 Msa0613770:intron 35.0%
ATAAATTTCACTTCCCCTCA+TGG + chr4_2:62649225-62649244 None:intergenic 35.0%
TGAATAATAACGTATGCAGG+TGG + chr4_2:62649461-62649480 None:intergenic 35.0%
GAGGAAAGATTGTGATTCGA+AGG - chr4_2:62644864-62644883 Msa0613770:intron 40.0%
GTCATAAAGCTTGTGAGTAG+AGG + chr4_2:62645005-62645024 None:intergenic 40.0%
ACTATGCAAGTTCCAGGTAT+AGG - chr4_2:62645023-62645042 Msa0613770:intron 40.0%
GTTAATACTTCGTCTAGCTG+AGG + chr4_2:62645734-62645753 None:intergenic 40.0%
!! GTGTTTGTTGTTATGGGCTT+GGG + chr4_2:62646385-62646404 None:intergenic 40.0%
!! TGTGTTTGTTGTTATGGGCT+TGG + chr4_2:62646386-62646405 None:intergenic 40.0%
TCTGCTTTCTTCAAACAGAG+TGG - chr4_2:62646441-62646460 Msa0613770:intron 40.0%
GAAATCACTTGCAGAAACCA+TGG + chr4_2:62646532-62646551 None:intergenic 40.0%
!! AAAATCAGCTTGGTTTGGTG+TGG - chr4_2:62646640-62646659 Msa0613770:intron 40.0%
!! GCTTGCTATTAGGATTGTTG+GGG - chr4_2:62646708-62646727 Msa0613770:intron 40.0%
GCCTTGATTGACTATTTGCA+TGG - chr4_2:62647424-62647443 Msa0613770:intron 40.0%
CCCATGCAAATAGTCAATCA+AGG + chr4_2:62647428-62647447 None:intergenic 40.0%
TCCCTTGAAACGTAAGTATG+TGG - chr4_2:62647554-62647573 Msa0613770:intron 40.0%
GCCACATACTTACGTTTCAA+GGG + chr4_2:62647558-62647577 None:intergenic 40.0%
TATGTGGCCATCATTCCTTT+CGG - chr4_2:62647570-62647589 Msa0613770:intron 40.0%
ATGTAATGCCACTAACCGAA+AGG + chr4_2:62647588-62647607 None:intergenic 40.0%
GGTTAGTGGCATTACATATG+TGG - chr4_2:62647591-62647610 Msa0613770:intron 40.0%
AGAATCGTTTGACCCTTGTT+TGG - chr4_2:62647701-62647720 Msa0613770:intron 40.0%
! GAATCGTTTGACCCTTGTTT+GGG - chr4_2:62647702-62647721 Msa0613770:intron 40.0%
CGAATTCGCAAAGAGAATCA+AGG + chr4_2:62648033-62648052 None:intergenic 40.0%
ACCACTTAACTTACACGCAT+TGG - chr4_2:62648063-62648082 Msa0613770:intron 40.0%
TCCAATGCGTGTAAGTTAAG+TGG + chr4_2:62648067-62648086 None:intergenic 40.0%
TGACTGCATGCTGCAAAAAA+TGG + chr4_2:62649124-62649143 None:intergenic 40.0%
TAGGATCCATTGCTTGATGA+TGG + chr4_2:62649179-62649198 None:intergenic 40.0%
TCAAGCAATGGATCCTACTT+TGG - chr4_2:62649182-62649201 Msa0613770:intron 40.0%
CTCAAGGTAATACAACCATG+AGG - chr4_2:62649207-62649226 Msa0613770:intron 40.0%
CAAGGTAATACAACCATGAG+GGG - chr4_2:62649209-62649228 Msa0613770:intron 40.0%
TCGGATTCGAACTCTGATGA+AGG - chr4_2:62645782-62645801 Msa0613770:intron 45.0%
AACGGTAGTTAACCCATGCT+CGG + chr4_2:62646250-62646269 None:intergenic 45.0%
TATCTGCTGCTCGTTGCAAA+CGG + chr4_2:62646268-62646287 None:intergenic 45.0%
AATAGCAAGCATGAGCCACA+GGG + chr4_2:62646698-62646717 None:intergenic 45.0%
TAATAGCAAGCATGAGCCAC+AGG + chr4_2:62646699-62646718 None:intergenic 45.0%
!! TGTGGCTCATGCTTGCTATT+AGG - chr4_2:62646698-62646717 Msa0613770:intron 45.0%
CTTGAGTACTCCACAACCAT+CGG - chr4_2:62646877-62646896 Msa0613770:intron 45.0%
GAGTATACATCCGATGGTTG+TGG + chr4_2:62646890-62646909 None:intergenic 45.0%
GGTCGGATTGATATTCGTGT+TGG + chr4_2:62647074-62647093 None:intergenic 45.0%
GGCCACATACTTACGTTTCA+AGG + chr4_2:62647559-62647578 None:intergenic 45.0%
CCACTAACCGAAAGGAATGA+TGG + chr4_2:62647580-62647599 None:intergenic 45.0%
CCATCATTCCTTTCGGTTAG+TGG - chr4_2:62647577-62647596 Msa0613770:intron 45.0%
! TGTAGAGCGCTCATCTAACT+TGG - chr4_2:62647725-62647744 Msa0613770:intron 45.0%
GCGCTCATCTAACTTGGTAT+CGG - chr4_2:62647731-62647750 Msa0613770:intron 45.0%
TGCAAGAGAGGAGTAGAATG+TGG + chr4_2:62647907-62647926 None:intergenic 45.0%
TTGGGGGAAATTTGCAAGAG+AGG + chr4_2:62647919-62647938 None:intergenic 45.0%
ACCCTTAGAGTGTGTTTGGA+TGG - chr4_2:62648620-62648639 Msa0613770:intron 45.0%
CCCATCCAAACACACTCTAA+GGG + chr4_2:62648624-62648643 None:intergenic 45.0%
CCCTTAGAGTGTGTTTGGAT+GGG - chr4_2:62648621-62648640 Msa0613770:intron 45.0%
CCTTAGAGTGTGTTTGGATG+GGG - chr4_2:62648622-62648641 Msa0613770:intron 45.0%
CTTAGAGTGTGTTTGGATGG+GGG - chr4_2:62648623-62648642 Msa0613770:intron 45.0%
! TTGGATGGGGGAATGTTTTG+AGG - chr4_2:62648635-62648654 Msa0613770:intron 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG - chr4_2:62648636-62648655 Msa0613770:intron 45.0%
AGAGGACCATCATCAAGCAA+TGG - chr4_2:62649170-62649189 Msa0613770:intron 45.0%
!! GGATCCTACTTTGGAACTCA+AGG - chr4_2:62649191-62649210 Msa0613770:intron 45.0%
TGTTGGGTGTATGTTGTGCT+AGG - chr4_2:62649312-62649331 Msa0613770:intron 45.0%
!!! TTTTTTTATTTTATATTTTG+AGG + chr4_2:62646014-62646033 None:intergenic 5.0%
!! CAAAATATAAAATAAAAAAA+AGG - chr4_2:62646014-62646033 Msa0613770:intron 5.0%
! AACTTATCGGCTGGCTCATC+AGG - chr4_2:62646167-62646186 Msa0613770:intron 50.0%
! ACTTATCGGCTGGCTCATCA+GGG - chr4_2:62646168-62646187 Msa0613770:intron 50.0%
CGAACCTGGACTCCCAATAT+TGG - chr4_2:62646192-62646211 Msa0613770:intron 50.0%
CTCACCAATATTGGGAGTCC+AGG + chr4_2:62646199-62646218 None:intergenic 50.0%
ATAGCAAGCATGAGCCACAG+GGG + chr4_2:62646697-62646716 None:intergenic 50.0%
GAAGCTACTAGCCAAACGTG+GGG + chr4_2:62647490-62647509 None:intergenic 50.0%
GGAAGCTACTAGCCAAACGT+GGG + chr4_2:62647491-62647510 None:intergenic 50.0%
TGGAAGCTACTAGCCAAACG+TGG + chr4_2:62647492-62647511 None:intergenic 50.0%
CAATGGATCACGCGGCAAAA+TGG + chr4_2:62647512-62647531 None:intergenic 50.0%
! CATTTTGCCGCGTGATCCAT+TGG - chr4_2:62647510-62647529 Msa0613770:intron 50.0%
TCAAGGGAAGTTGCGCACTT+TGG + chr4_2:62647542-62647561 None:intergenic 50.0%
AGCGCTCTACACCCAAACAA+GGG + chr4_2:62647716-62647735 None:intergenic 50.0%
CCCCATCCAAACACACTCTA+AGG + chr4_2:62648625-62648644 None:intergenic 50.0%
TAACGTATGCAGGTGGCTGT+AGG + chr4_2:62649454-62649473 None:intergenic 50.0%
! CTTATCGGCTGGCTCATCAG+GGG - chr4_2:62646169-62646188 Msa0613770:intron 55.0%
GACTCTGCCAATGGATCACG+CGG + chr4_2:62647520-62647539 None:intergenic 55.0%
CGCACTTTGGACTCTGCCAA+TGG + chr4_2:62647529-62647548 None:intergenic 55.0%
GAGCGCTCTACACCCAAACA+AGG + chr4_2:62647717-62647736 None:intergenic 55.0%
GTATGCAGGTGGCTGTAGGA+AGG + chr4_2:62649450-62649469 None:intergenic 55.0%
TGCCACACCAGGACCTGTTC+AGG - chr4_2:62646667-62646686 Msa0613770:intron 60.0%
GACCTGAACAGGTCCTGGTG+TGG + chr4_2:62646672-62646691 None:intergenic 60.0%
TCCACGCACCCCTTCAACGA+GGG + chr4_2:62647466-62647485 None:intergenic 60.0%
TTCCACGCACCCCTTCAACG+AGG + chr4_2:62647467-62647486 None:intergenic 60.0%
TGGCTCATCAGGGGCGAACC+TGG - chr4_2:62646178-62646197 Msa0613770:intron 65.0%
GGTGTGGCACTTGCCACACC+AGG - chr4_2:62646656-62646675 Msa0613770:intron 65.0%
GCAAGCATGAGCCACAGGGG+CGG + chr4_2:62646694-62646713 None:intergenic 65.0%
! TCCCTCGTTGAAGGGGTGCG+TGG - chr4_2:62647462-62647481 Msa0613770:intron 65.0%
GGTGCGTGGAACCCCACGTT+TGG - chr4_2:62647476-62647495 Msa0613770:intron 65.0%
GGGCGGACCTGAACAGGTCC+TGG + chr4_2:62646677-62646696 None:intergenic 70.0%
CCACAGGGGCGGACCTGAAC+AGG + chr4_2:62646683-62646702 None:intergenic 70.0%
CCTGTTCAGGTCCGCCCCTG+TGG - chr4_2:62646680-62646699 Msa0613770:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 62644857 62649507 62644857 ID=Msa0613770;Name=Msa0613770
chr4_2 mRNA 62644857 62649507 62644857 ID=Msa0613770-mRNA-1;Parent=Msa0613770;Name=Msa0613770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.66|0|0.33|3|0|91
chr4_2 exon 62649326 62649507 62649326 ID=Msa0613770-mRNA-1:exon:17290;Parent=Msa0613770-mRNA-1
chr4_2 exon 62645152 62645230 62645152 ID=Msa0613770-mRNA-1:exon:17289;Parent=Msa0613770-mRNA-1
chr4_2 exon 62644857 62644871 62644857 ID=Msa0613770-mRNA-1:exon:17288;Parent=Msa0613770-mRNA-1
chr4_2 CDS 62649326 62649507 62649326 ID=Msa0613770-mRNA-1:cds;Parent=Msa0613770-mRNA-1
chr4_2 CDS 62645152 62645230 62645152 ID=Msa0613770-mRNA-1:cds;Parent=Msa0613770-mRNA-1
chr4_2 CDS 62644857 62644871 62644857 ID=Msa0613770-mRNA-1:cds;Parent=Msa0613770-mRNA-1
Gene Sequence

>Msa0613770

ATGGGGAGAGGAAAGATTGTGATTCGAAGGATTGAGAATTTGACAAGCCGTCAAGTGACTTTCTCAAAGAGAAGAAAAGGGTTGATGAAAAAAGCTAAAGAACTATCCATTCTTTGTGATGCACAAGTTGGATTGATTTTATTCTCCTCTACTCACAAGCTTTATGACTATGCAAGTTCCAGCATGCAGTCAGTGATCGAGCGTTATAACAAGTTAGTAGAGGACCATCATCAAGCAATGGATCCTACTTTGGAACTCAAGCTTTACGTACGTTGA
Protein sequence

>Msa0613770

MGRGKIVIRRIENLTSRQVTFSKRRKGLMKKAKELSILCDAQVGLILFSSTHKLYDYASSSMQSVIERYNKLVEDHHQAMDPTLELKLYVR*