Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616670 | XP_039684492.1 | 95.420 | 131 | 4 | 1 | 2 | 132 | 3 | 131 | 4.82e-84 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616670 | sp|Q8LBM2|TIF5A_ARATH | 43.307 | 127 | 66 | 4 | 3 | 125 | 4 | 128 | 2.39e-20 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0616670 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616670 | MtrunA17_Chr8g0376421 | 95.420 | 131 | 4 | 1 | 2 | 132 | 3 | 131 | 4.44e-88 | 252 |
| Msa0616670 | MtrunA17_Chr2g0285821 | 51.449 | 138 | 46 | 5 | 3 | 125 | 2 | 133 | 1.30e-33 | 114 |
| Msa0616670 | MtrunA17_Chr8g0393051 | 50.781 | 128 | 47 | 4 | 1 | 124 | 1 | 116 | 5.55e-30 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616670 | AT1G30135.1 | 43.307 | 127 | 66 | 4 | 3 | 125 | 4 | 128 | 2.43e-21 | 83.2 |
Find 36 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTATGCCCATTGTTTA+AGG | 0.167289 | 4_2:+66650688 | Msa0616670:three_prime_UTR |
| GAATCCGATTCTTCCTCTTT+TGG | 0.250942 | 4_2:-66650431 | None:intergenic |
| GACTGATGCCACTGAGATTC+AGG | 0.303605 | 4_2:+66648369 | Msa0616670:CDS |
| ACAGAACCGTAGAATTTCTT+TGG | 0.322349 | 4_2:-66650723 | None:intergenic |
| TCTTTCTTCCAAGAGAGTTA+TGG | 0.395272 | 4_2:-66648050 | None:intergenic |
| TCTTCTCATTTATCTTAAGA+TGG | 0.423225 | 4_2:-66650470 | None:intergenic |
| TTCTCCAAAAGAGGAAGAAT+CGG | 0.429979 | 4_2:+66650427 | Msa0616670:CDS |
| TCATTTATCTTAAGATGGTA+AGG | 0.430837 | 4_2:-66650465 | None:intergenic |
| CGTGGGACAAATATCAGAAA+TGG | 0.434500 | 4_2:-66648118 | None:intergenic |
| AATATTAAACCTTAAACAAT+GGG | 0.440398 | 4_2:-66650697 | None:intergenic |
| GAAATGGTGAGGACACCAAC+TGG | 0.450322 | 4_2:+66650318 | Msa0616670:CDS |
| AAATATTAAACCTTAAACAA+TGG | 0.454258 | 4_2:-66650698 | None:intergenic |
| TTGTCACTCCATAACTCTCT+TGG | 0.455124 | 4_2:+66648042 | Msa0616670:five_prime_UTR |
| TGAAAGATACACTAGTATAT+AGG | 0.468122 | 4_2:-66650546 | None:intergenic |
| AAGATCATAAGCAGCAGTAC+AGG | 0.470194 | 4_2:+66648311 | Msa0616670:CDS |
| TGCAGAGGTTTCTCCAAAAG+AGG | 0.484466 | 4_2:+66650418 | Msa0616670:CDS |
| ATTTAACCAAAGAAATTCTA+CGG | 0.489632 | 4_2:+66650717 | Msa0616670:three_prime_UTR |
| CTAGTGTATCTTTCAACAAA+GGG | 0.494852 | 4_2:+66650554 | Msa0616670:three_prime_UTR |
| TGCTGCTTATGATCTTCTTG+TGG | 0.500195 | 4_2:-66648304 | None:intergenic |
| CCGTTGACCATTGTCTATGA+TGG | 0.521959 | 4_2:+66648334 | Msa0616670:CDS |
| GAAGAAGAAGAATTTGAACT+TGG | 0.522533 | 4_2:+66648074 | Msa0616670:CDS |
| CATTTATCTTAAGATGGTAA+GGG | 0.531668 | 4_2:-66650464 | None:intergenic |
| TGCATGGAAAGAGAAGTACT+AGG | 0.548727 | 4_2:-66650387 | None:intergenic |
| TGCAAGCATTAAAATGGACC+TGG | 0.550717 | 4_2:-66650289 | None:intergenic |
| AATTTCACAGCATGTCTACA+AGG | 0.551214 | 4_2:-66650633 | None:intergenic |
| ACTAGTGTATCTTTCAACAA+AGG | 0.570785 | 4_2:+66650553 | Msa0616670:three_prime_UTR |
| GCATGGAAAGAGAAGTACTA+GGG | 0.573020 | 4_2:-66650386 | None:intergenic |
| ATTTATCTTAAGATGGTAAG+GGG | 0.589050 | 4_2:-66650463 | None:intergenic |
| CAAATATCAGAAATGGAAGG+AGG | 0.629749 | 4_2:-66648111 | None:intergenic |
| AATCTTGCCATCATAGACAA+TGG | 0.643141 | 4_2:-66648341 | None:intergenic |
| CAATAAACAGTGAAGTGTTG+TGG | 0.644500 | 4_2:-66648022 | None:intergenic |
| CCATCATAGACAATGGTCAA+CGG | 0.652322 | 4_2:-66648334 | None:intergenic |
| AAACAGTGAAGTGTTGTGGA+CGG | 0.653198 | 4_2:-66648018 | None:intergenic |
| GGCTCTGATGATGATCCAGT+TGG | 0.655026 | 4_2:-66650333 | None:intergenic |
| GGACAAATATCAGAAATGGA+AGG | 0.658341 | 4_2:-66648114 | None:intergenic |
| TGAACACACCTGAATCTCAG+TGG | 0.730872 | 4_2:-66648377 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTTAAAATA+TGG | + | chr4_2:66648993-66649012 | Msa0616670:intron | 0.0% |
| !!! | ATTTTAATTTTAATATATTA+AGG | - | chr4_2:66650093-66650112 | None:intergenic | 0.0% |
| !!! | AAGTAAAAAAACAATTTTTT+AGG | - | chr4_2:66648817-66648836 | None:intergenic | 10.0% |
| !! | ATAATAGTTTGAATTAAAAT+TGG | + | chr4_2:66650221-66650240 | Msa0616670:intron | 10.0% |
| !! | AAATAAAACAAAAACCTAAT+TGG | - | chr4_2:66648224-66648243 | None:intergenic | 15.0% |
| !!! | ATTAGGTTTTTGTTTTATTT+TGG | + | chr4_2:66648224-66648243 | Msa0616670:intron | 15.0% |
| !!! | TATGCAATTTTTGTTTTTTT+AGG | - | chr4_2:66648570-66648589 | None:intergenic | 15.0% |
| !! | CATTGAATAAATAATGTATA+TGG | + | chr4_2:66648753-66648772 | Msa0616670:intron | 15.0% |
| !!! | TTTTTACTTATAAATGTGAA+CGG | + | chr4_2:66648828-66648847 | Msa0616670:intron | 15.0% |
| !!! | ATATACGTTTTTTATTTTTC+TGG | - | chr4_2:66648864-66648883 | None:intergenic | 15.0% |
| !!! | CTATTTATTAATTTTTTCTG+CGG | + | chr4_2:66649585-66649604 | Msa0616670:intron | 15.0% |
| !! | GAAAAAAAAATCAAAAAACA+TGG | - | chr4_2:66650037-66650056 | None:intergenic | 15.0% |
| !! | AATATTAAACCTTAAACAAT+GGG | - | chr4_2:66650700-66650719 | None:intergenic | 15.0% |
| !! | AAATATTAAACCTTAAACAA+TGG | - | chr4_2:66650701-66650720 | None:intergenic | 15.0% |
| !!! | ACTTTATTTCACATATAACA+AGG | - | chr4_2:66648171-66648190 | None:intergenic | 20.0% |
| !!! | AATTTGCTTATAAATGTGAA+CGG | - | chr4_2:66648507-66648526 | None:intergenic | 20.0% |
| !!! | TAAGCAAAACACAATTTTTA+AGG | + | chr4_2:66648728-66648747 | Msa0616670:intron | 20.0% |
| !! | CATAGAATAATTAATGTATC+TGG | - | chr4_2:66648792-66648811 | None:intergenic | 20.0% |
| !! | ATTAAAAGAGAGAAGATAAA+TGG | - | chr4_2:66649150-66649169 | None:intergenic | 20.0% |
| !! | CAATGATATTAGTACTTAAT+AGG | - | chr4_2:66649634-66649653 | None:intergenic | 20.0% |
| !!! | TCTTTTCATCATATAATCTT+TGG | - | chr4_2:66649769-66649788 | None:intergenic | 20.0% |
| !! | AGCTACAAATTTAGTAATAA+AGG | + | chr4_2:66649802-66649821 | Msa0616670:intron | 20.0% |
| !! | GCTACAAATTTAGTAATAAA+GGG | + | chr4_2:66649803-66649822 | Msa0616670:intron | 20.0% |
| !!! | ATTTGTAGTTTGCATTTATA+AGG | - | chr4_2:66649835-66649854 | None:intergenic | 20.0% |
| !! | TATAAATGCAAACTACAAAT+TGG | + | chr4_2:66649835-66649854 | Msa0616670:intron | 20.0% |
| !! | GATATAAATAAATCAGTAAG+CGG | + | chr4_2:66649889-66649908 | Msa0616670:intron | 20.0% |
| !!! | TCAAACTATTATTGATGATA+AGG | - | chr4_2:66650213-66650232 | None:intergenic | 20.0% |
| !! | TTAAAATTGGAATTAAGTAG+TGG | + | chr4_2:66650234-66650253 | Msa0616670:intron | 20.0% |
| !! | TAAAATTGGAATTAAGTAGT+GGG | + | chr4_2:66650235-66650254 | Msa0616670:intron | 20.0% |
| !!! | TTTTTTTGCAAGCATTAAAA+TGG | - | chr4_2:66650298-66650317 | None:intergenic | 20.0% |
| !!! | CAATTTTTTAGTTGATGTTT+TGG | + | chr4_2:66650660-66650679 | Msa0616670:three_prime_UTR | 20.0% |
| !! | ATTTAACCAAAGAAATTCTA+CGG | + | chr4_2:66650717-66650736 | Msa0616670:three_prime_UTR | 20.0% |
| ! | TAAAGTTAACATGTACTACT+TGG | + | chr4_2:66648185-66648204 | Msa0616670:intron | 25.0% |
| ! | AAAGTTAACATGTACTACTT+GGG | + | chr4_2:66648186-66648205 | Msa0616670:intron | 25.0% |
| ! | AAATTGCATATAAATGTGAC+CGG | + | chr4_2:66648580-66648599 | Msa0616670:intron | 25.0% |
| ! | ATGCATTATTGTACATGATA+TGG | - | chr4_2:66648688-66648707 | None:intergenic | 25.0% |
| !! | TTTTCAAAAAATGCATATGC+AGG | + | chr4_2:66648908-66648927 | Msa0616670:intron | 25.0% |
| !! | TATTAATTCTGGTGCTAAAT+AGG | - | chr4_2:66649406-66649425 | None:intergenic | 25.0% |
| ! | TGTGTACAATTTATTACGTA+TGG | - | chr4_2:66649516-66649535 | None:intergenic | 25.0% |
| !! | ACAACATAACACTTCATTTT+TGG | - | chr4_2:66649704-66649723 | None:intergenic | 25.0% |
| ! | TTTATATCTTTCGTTTGTCT+TGG | - | chr4_2:66649877-66649896 | None:intergenic | 25.0% |
| !! | ATTTGTTGACCTCAAAATTT+GGG | + | chr4_2:66649976-66649995 | Msa0616670:intron | 25.0% |
| ! | AAAATTGGAATTAAGTAGTG+GGG | + | chr4_2:66650236-66650255 | Msa0616670:intron | 25.0% |
| ! | ATGTGAATTGTATATATTGC+AGG | + | chr4_2:66650266-66650285 | Msa0616670:intron | 25.0% |
| ! | AATGCTTGCAAAAAAAGAAA+TGG | + | chr4_2:66650302-66650321 | Msa0616670:CDS | 25.0% |
| ! | CTATACAAGTTAAAAACTGA+TGG | - | chr4_2:66650366-66650385 | None:intergenic | 25.0% |
| ! | ATTTATCTTAAGATGGTAAG+GGG | - | chr4_2:66650466-66650485 | None:intergenic | 25.0% |
| ! | CATTTATCTTAAGATGGTAA+GGG | - | chr4_2:66650467-66650486 | None:intergenic | 25.0% |
| ! | TCATTTATCTTAAGATGGTA+AGG | - | chr4_2:66650468-66650487 | None:intergenic | 25.0% |
| ! | TCTTCTCATTTATCTTAAGA+TGG | - | chr4_2:66650473-66650492 | None:intergenic | 25.0% |
| ! | TGAAAGATACACTAGTATAT+AGG | - | chr4_2:66650549-66650568 | None:intergenic | 25.0% |
| GAAGAAGAAGAATTTGAACT+TGG | + | chr4_2:66648074-66648093 | Msa0616670:CDS | 30.0% | |
| AAAGAAGAAGAAGAAGAAGA+AGG | + | chr4_2:66648274-66648293 | Msa0616670:CDS | 30.0% | |
| ! | GTTTTGCTTATAAATGTGAC+CGG | - | chr4_2:66648718-66648737 | None:intergenic | 30.0% |
| ! | CGGATTACTCAAAAAACTTT+TGG | - | chr4_2:66649042-66649061 | None:intergenic | 30.0% |
| !!! | GTTTTTTGAGTAATCCGTTT+TGG | + | chr4_2:66649045-66649064 | Msa0616670:intron | 30.0% |
| TTGAATGAAAGTTTGGTTGA+GGG | - | chr4_2:66649113-66649132 | None:intergenic | 30.0% | |
| AGAGATTCAGAAATTACTCA+AGG | + | chr4_2:66649217-66649236 | Msa0616670:intron | 30.0% | |
| ! | AAGCATTTTCTTTCCACAAT+GGG | - | chr4_2:66649435-66649454 | None:intergenic | 30.0% |
| ACAAGAATTAAAGAGAGAGA+GGG | - | chr4_2:66649490-66649509 | None:intergenic | 30.0% | |
| TCTCTCTCTTTAATTCTTGT+GGG | + | chr4_2:66649490-66649509 | Msa0616670:intron | 30.0% | |
| !!! | TTCATTTTTGGTGCTTAAGT+GGG | - | chr4_2:66649692-66649711 | None:intergenic | 30.0% |
| ! | ATGAAGTGTTATGTTGTAGA+TGG | + | chr4_2:66649707-66649726 | Msa0616670:intron | 30.0% |
| !!! | CAAATTTTGAGGTCAACAAA+TGG | - | chr4_2:66649977-66649996 | None:intergenic | 30.0% |
| ! | CATTTGTTGACCTCAAAATT+TGG | + | chr4_2:66649975-66649994 | Msa0616670:intron | 30.0% |
| ! | TAAGGTGAGTTGAAAAAGAA+TGG | - | chr4_2:66650075-66650094 | None:intergenic | 30.0% |
| AATAGCATCATCATCTAGTT+AGG | + | chr4_2:66650113-66650132 | Msa0616670:intron | 30.0% | |
| TTGCAAAAAAAGAAATGGTG+AGG | + | chr4_2:66650307-66650326 | Msa0616670:CDS | 30.0% | |
| ! | TTAAAAACTGATGGTGAAGA+TGG | - | chr4_2:66650357-66650376 | None:intergenic | 30.0% |
| ACTAGTGTATCTTTCAACAA+AGG | + | chr4_2:66650553-66650572 | Msa0616670:three_prime_UTR | 30.0% | |
| CTAGTGTATCTTTCAACAAA+GGG | + | chr4_2:66650554-66650573 | Msa0616670:three_prime_UTR | 30.0% | |
| !! | CAATAAACAGTGAAGTGTTG+TGG | - | chr4_2:66648025-66648044 | None:intergenic | 35.0% |
| TCTTTCTTCCAAGAGAGTTA+TGG | - | chr4_2:66648053-66648072 | None:intergenic | 35.0% | |
| CAAATATCAGAAATGGAAGG+AGG | - | chr4_2:66648114-66648133 | None:intergenic | 35.0% | |
| GGACAAATATCAGAAATGGA+AGG | - | chr4_2:66648117-66648136 | None:intergenic | 35.0% | |
| AATCTTGCCATCATAGACAA+TGG | - | chr4_2:66648344-66648363 | None:intergenic | 35.0% | |
| AGTTTAAAAACTACTCCCTC+CGG | - | chr4_2:66648602-66648621 | None:intergenic | 35.0% | |
| CTCTAAATCAACTACCTACA+AGG | - | chr4_2:66649084-66649103 | None:intergenic | 35.0% | |
| ! | CTTGTAGGTAGTTGATTTAG+AGG | + | chr4_2:66649082-66649101 | Msa0616670:intron | 35.0% |
| CTTGAATGAAAGTTTGGTTG+AGG | - | chr4_2:66649114-66649133 | None:intergenic | 35.0% | |
| TGAGAGCTTGAATGAAAGTT+TGG | - | chr4_2:66649120-66649139 | None:intergenic | 35.0% | |
| ! | AATAGTTAGAGCATCCACAA+TGG | + | chr4_2:66649369-66649388 | Msa0616670:intron | 35.0% |
| ! | AGCATTTTCTTTCCACAATG+GGG | - | chr4_2:66649434-66649453 | None:intergenic | 35.0% |
| ! | CAAGCATTTTCTTTCCACAA+TGG | - | chr4_2:66649436-66649455 | None:intergenic | 35.0% |
| CATTGTGGAAAGAAAATGCT+TGG | + | chr4_2:66649434-66649453 | Msa0616670:intron | 35.0% | |
| CACAAGAATTAAAGAGAGAG+AGG | - | chr4_2:66649491-66649510 | None:intergenic | 35.0% | |
| CTCTCTCTCTTTAATTCTTG+TGG | + | chr4_2:66649489-66649508 | Msa0616670:intron | 35.0% | |
| !!! | ATTAATTTTTTCTGCGGTGC+TGG | + | chr4_2:66649591-66649610 | Msa0616670:intron | 35.0% |
| !!! | TTAATTTTTTCTGCGGTGCT+GGG | + | chr4_2:66649592-66649611 | Msa0616670:intron | 35.0% |
| !!! | CTTCATTTTTGGTGCTTAAG+TGG | - | chr4_2:66649693-66649712 | None:intergenic | 35.0% |
| ! | ATAGTTGTGCCCAAATTTTG+AGG | - | chr4_2:66649988-66650007 | None:intergenic | 35.0% |
| TCTCTTGAGTGATCACAATA+TGG | - | chr4_2:66650188-66650207 | None:intergenic | 35.0% | |
| AATTGTATATATTGCAGGCC+AGG | + | chr4_2:66650271-66650290 | Msa0616670:intron | 35.0% | |
| TTCTCCAAAAGAGGAAGAAT+CGG | + | chr4_2:66650427-66650446 | Msa0616670:CDS | 35.0% | |
| AATTTCACAGCATGTCTACA+AGG | - | chr4_2:66650636-66650655 | None:intergenic | 35.0% | |
| CAGTTTATGCCCATTGTTTA+AGG | + | chr4_2:66650688-66650707 | Msa0616670:three_prime_UTR | 35.0% | |
| ACAGAACCGTAGAATTTCTT+TGG | - | chr4_2:66650726-66650745 | None:intergenic | 35.0% | |
| !! | AAACAGTGAAGTGTTGTGGA+CGG | - | chr4_2:66648021-66648040 | None:intergenic | 40.0% |
| TTGTCACTCCATAACTCTCT+TGG | + | chr4_2:66648042-66648061 | Msa0616670:five_prime_UTR | 40.0% | |
| CGTGGGACAAATATCAGAAA+TGG | - | chr4_2:66648121-66648140 | None:intergenic | 40.0% | |
| GATGAAGAAGATGCTTACGT+GGG | - | chr4_2:66648138-66648157 | None:intergenic | 40.0% | |
| AGATGAAGAAGATGCTTACG+TGG | - | chr4_2:66648139-66648158 | None:intergenic | 40.0% | |
| TGTACTACTTGGGAAATACG+TGG | + | chr4_2:66648196-66648215 | Msa0616670:intron | 40.0% | |
| GGAAATACGTGGTTCCAATT+AGG | + | chr4_2:66648207-66648226 | Msa0616670:intron | 40.0% | |
| ! | TGCTGCTTATGATCTTCTTG+TGG | - | chr4_2:66648307-66648326 | None:intergenic | 40.0% |
| AAGATCATAAGCAGCAGTAC+AGG | + | chr4_2:66648311-66648330 | Msa0616670:CDS | 40.0% | |
| CCATCATAGACAATGGTCAA+CGG | - | chr4_2:66648337-66648356 | None:intergenic | 40.0% | |
| TTGCATATAAATGTGACCGG+AGG | + | chr4_2:66648583-66648602 | Msa0616670:intron | 40.0% | |
| TGCATATAAATGTGACCGGA+GGG | + | chr4_2:66648584-66648603 | Msa0616670:intron | 40.0% | |
| ACAATAATGCATACTCCCTC+CGG | + | chr4_2:66648696-66648715 | Msa0616670:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | - | chr4_2:66648714-66648733 | None:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | - | chr4_2:66648715-66648734 | None:intergenic | 40.0% | |
| !!! | AACTTTTGGTGACGTTCAAG+AGG | - | chr4_2:66649028-66649047 | None:intergenic | 40.0% |
| GAGAACAGATCTCTCCAAAA+CGG | - | chr4_2:66649062-66649081 | None:intergenic | 40.0% | |
| TCAAGGAGAGTTTGATCAAG+AGG | + | chr4_2:66649234-66649253 | Msa0616670:intron | 40.0% | |
| !! | ATGGGGGTGCTTATTAATTC+TGG | - | chr4_2:66649417-66649436 | None:intergenic | 40.0% |
| ATTAATAAGCACCCCCATTG+TGG | + | chr4_2:66649419-66649438 | Msa0616670:intron | 40.0% | |
| ! | GCATTTTCTTTCCACAATGG+GGG | - | chr4_2:66649433-66649452 | None:intergenic | 40.0% |
| ! | TTGGTGCTTACAGAGAAATG+TGG | + | chr4_2:66649453-66649472 | Msa0616670:intron | 40.0% |
| CCAACTTCACTTCATTCACA+AGG | - | chr4_2:66649931-66649950 | None:intergenic | 40.0% | |
| CCTTGTGAATGAAGTGAAGT+TGG | + | chr4_2:66649928-66649947 | Msa0616670:intron | 40.0% | |
| ACAAATGGATGCAGTGCATT+TGG | - | chr4_2:66649962-66649981 | None:intergenic | 40.0% | |
| AGCATCATCATCTAGTTAGG+AGG | + | chr4_2:66650116-66650135 | Msa0616670:intron | 40.0% | |
| TGCAAGCATTAAAATGGACC+TGG | - | chr4_2:66650292-66650311 | None:intergenic | 40.0% | |
| !! | GCATGGAAAGAGAAGTACTA+GGG | - | chr4_2:66650389-66650408 | None:intergenic | 40.0% |
| !! | TGCATGGAAAGAGAAGTACT+AGG | - | chr4_2:66650390-66650409 | None:intergenic | 40.0% |
| ! | GAATCCGATTCTTCCTCTTT+TGG | - | chr4_2:66650434-66650453 | None:intergenic | 40.0% |
| CCGTTGACCATTGTCTATGA+TGG | + | chr4_2:66648334-66648353 | Msa0616670:CDS | 45.0% | |
| TGAACACACCTGAATCTCAG+TGG | - | chr4_2:66648380-66648399 | None:intergenic | 45.0% | |
| TGCAGGTCTTACTACACATG+TGG | + | chr4_2:66648925-66648944 | Msa0616670:intron | 45.0% | |
| GAGAGATCTGTTCTCCTTGT+AGG | + | chr4_2:66649067-66649086 | Msa0616670:intron | 45.0% | |
| ! | AGTTAGAGCATCCACAATGG+TGG | + | chr4_2:66649372-66649391 | Msa0616670:intron | 45.0% |
| ! | GTTAGAGCATCCACAATGGT+GGG | + | chr4_2:66649373-66649392 | Msa0616670:intron | 45.0% |
| ! | CCTCTGCAACGATTTTTGCA+TGG | - | chr4_2:66650406-66650425 | None:intergenic | 45.0% |
| CCATGCAAAAATCGTTGCAG+AGG | + | chr4_2:66650403-66650422 | Msa0616670:CDS | 45.0% | |
| TGCAGAGGTTTCTCCAAAAG+AGG | + | chr4_2:66650418-66650437 | Msa0616670:CDS | 45.0% | |
| GACTGATGCCACTGAGATTC+AGG | + | chr4_2:66648369-66648388 | Msa0616670:CDS | 50.0% | |
| AGGTGAAGAACCCACCATTG+TGG | - | chr4_2:66649386-66649405 | None:intergenic | 50.0% | |
| !!! | TTTTTTCTGCGGTGCTGGGT+TGG | + | chr4_2:66649596-66649615 | Msa0616670:intron | 50.0% |
| GAAATGGTGAGGACACCAAC+TGG | + | chr4_2:66650318-66650337 | Msa0616670:CDS | 50.0% | |
| ! | GGCTCTGATGATGATCCAGT+TGG | - | chr4_2:66650336-66650355 | None:intergenic | 50.0% |
| ! | CGGTGCTGGGTTGGAGAAAT+TGG | + | chr4_2:66649605-66649624 | Msa0616670:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 66647985 | 66650754 | 66647985 | ID=Msa0616670;Name=Msa0616670 |
| chr4_2 | mRNA | 66647985 | 66650754 | 66647985 | ID=Msa0616670-mRNA-1;Parent=Msa0616670;Name=Msa0616670-mRNA-1;_AED=0.12;_eAED=0.12;_QI=87|1|1|1|1|1|3|257|132 |
| chr4_2 | exon | 66647985 | 66648139 | 66647985 | ID=Msa0616670-mRNA-1:exon:18965;Parent=Msa0616670-mRNA-1 |
| chr4_2 | exon | 66648270 | 66648390 | 66648270 | ID=Msa0616670-mRNA-1:exon:18966;Parent=Msa0616670-mRNA-1 |
| chr4_2 | exon | 66650288 | 66650754 | 66650288 | ID=Msa0616670-mRNA-1:exon:18967;Parent=Msa0616670-mRNA-1 |
| chr4_2 | five_prime_UTR | 66647985 | 66648071 | 66647985 | ID=Msa0616670-mRNA-1:five_prime_utr;Parent=Msa0616670-mRNA-1 |
| chr4_2 | CDS | 66648072 | 66648139 | 66648072 | ID=Msa0616670-mRNA-1:cds;Parent=Msa0616670-mRNA-1 |
| chr4_2 | CDS | 66648270 | 66648390 | 66648270 | ID=Msa0616670-mRNA-1:cds;Parent=Msa0616670-mRNA-1 |
| chr4_2 | CDS | 66650288 | 66650497 | 66650288 | ID=Msa0616670-mRNA-1:cds;Parent=Msa0616670-mRNA-1 |
| chr4_2 | three_prime_UTR | 66650498 | 66650754 | 66650498 | ID=Msa0616670-mRNA-1:three_prime_utr;Parent=Msa0616670-mRNA-1 |
| Gene Sequence |
| Protein sequence |