Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0616670 | XP_039684492.1 | 95.420 | 131 | 4 | 1 | 2 | 132 | 3 | 131 | 4.82e-84 | 252 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0616670 | sp|Q8LBM2|TIF5A_ARATH | 43.307 | 127 | 66 | 4 | 3 | 125 | 4 | 128 | 2.39e-20 | 83.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0616670 | TF | Tify |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0616670 | MtrunA17_Chr8g0376421 | 95.420 | 131 | 4 | 1 | 2 | 132 | 3 | 131 | 4.44e-88 | 252 |
Msa0616670 | MtrunA17_Chr2g0285821 | 51.449 | 138 | 46 | 5 | 3 | 125 | 2 | 133 | 1.30e-33 | 114 |
Msa0616670 | MtrunA17_Chr8g0393051 | 50.781 | 128 | 47 | 4 | 1 | 124 | 1 | 116 | 5.55e-30 | 104 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0616670 | AT1G30135.1 | 43.307 | 127 | 66 | 4 | 3 | 125 | 4 | 128 | 2.43e-21 | 83.2 |
Find 36 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGTTTATGCCCATTGTTTA+AGG | 0.167289 | 4_2:+66650688 | Msa0616670:three_prime_UTR |
GAATCCGATTCTTCCTCTTT+TGG | 0.250942 | 4_2:-66650431 | None:intergenic |
GACTGATGCCACTGAGATTC+AGG | 0.303605 | 4_2:+66648369 | Msa0616670:CDS |
ACAGAACCGTAGAATTTCTT+TGG | 0.322349 | 4_2:-66650723 | None:intergenic |
TCTTTCTTCCAAGAGAGTTA+TGG | 0.395272 | 4_2:-66648050 | None:intergenic |
TCTTCTCATTTATCTTAAGA+TGG | 0.423225 | 4_2:-66650470 | None:intergenic |
TTCTCCAAAAGAGGAAGAAT+CGG | 0.429979 | 4_2:+66650427 | Msa0616670:CDS |
TCATTTATCTTAAGATGGTA+AGG | 0.430837 | 4_2:-66650465 | None:intergenic |
CGTGGGACAAATATCAGAAA+TGG | 0.434500 | 4_2:-66648118 | None:intergenic |
AATATTAAACCTTAAACAAT+GGG | 0.440398 | 4_2:-66650697 | None:intergenic |
GAAATGGTGAGGACACCAAC+TGG | 0.450322 | 4_2:+66650318 | Msa0616670:CDS |
AAATATTAAACCTTAAACAA+TGG | 0.454258 | 4_2:-66650698 | None:intergenic |
TTGTCACTCCATAACTCTCT+TGG | 0.455124 | 4_2:+66648042 | Msa0616670:five_prime_UTR |
TGAAAGATACACTAGTATAT+AGG | 0.468122 | 4_2:-66650546 | None:intergenic |
AAGATCATAAGCAGCAGTAC+AGG | 0.470194 | 4_2:+66648311 | Msa0616670:CDS |
TGCAGAGGTTTCTCCAAAAG+AGG | 0.484466 | 4_2:+66650418 | Msa0616670:CDS |
ATTTAACCAAAGAAATTCTA+CGG | 0.489632 | 4_2:+66650717 | Msa0616670:three_prime_UTR |
CTAGTGTATCTTTCAACAAA+GGG | 0.494852 | 4_2:+66650554 | Msa0616670:three_prime_UTR |
TGCTGCTTATGATCTTCTTG+TGG | 0.500195 | 4_2:-66648304 | None:intergenic |
CCGTTGACCATTGTCTATGA+TGG | 0.521959 | 4_2:+66648334 | Msa0616670:CDS |
GAAGAAGAAGAATTTGAACT+TGG | 0.522533 | 4_2:+66648074 | Msa0616670:CDS |
CATTTATCTTAAGATGGTAA+GGG | 0.531668 | 4_2:-66650464 | None:intergenic |
TGCATGGAAAGAGAAGTACT+AGG | 0.548727 | 4_2:-66650387 | None:intergenic |
TGCAAGCATTAAAATGGACC+TGG | 0.550717 | 4_2:-66650289 | None:intergenic |
AATTTCACAGCATGTCTACA+AGG | 0.551214 | 4_2:-66650633 | None:intergenic |
ACTAGTGTATCTTTCAACAA+AGG | 0.570785 | 4_2:+66650553 | Msa0616670:three_prime_UTR |
GCATGGAAAGAGAAGTACTA+GGG | 0.573020 | 4_2:-66650386 | None:intergenic |
ATTTATCTTAAGATGGTAAG+GGG | 0.589050 | 4_2:-66650463 | None:intergenic |
CAAATATCAGAAATGGAAGG+AGG | 0.629749 | 4_2:-66648111 | None:intergenic |
AATCTTGCCATCATAGACAA+TGG | 0.643141 | 4_2:-66648341 | None:intergenic |
CAATAAACAGTGAAGTGTTG+TGG | 0.644500 | 4_2:-66648022 | None:intergenic |
CCATCATAGACAATGGTCAA+CGG | 0.652322 | 4_2:-66648334 | None:intergenic |
AAACAGTGAAGTGTTGTGGA+CGG | 0.653198 | 4_2:-66648018 | None:intergenic |
GGCTCTGATGATGATCCAGT+TGG | 0.655026 | 4_2:-66650333 | None:intergenic |
GGACAAATATCAGAAATGGA+AGG | 0.658341 | 4_2:-66648114 | None:intergenic |
TGAACACACCTGAATCTCAG+TGG | 0.730872 | 4_2:-66648377 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTATTTTTTAAAATA+TGG | + | chr4_2:66648993-66649012 | Msa0616670:intron | 0.0% |
!!! | ATTTTAATTTTAATATATTA+AGG | - | chr4_2:66650093-66650112 | None:intergenic | 0.0% |
!!! | AAGTAAAAAAACAATTTTTT+AGG | - | chr4_2:66648817-66648836 | None:intergenic | 10.0% |
!! | ATAATAGTTTGAATTAAAAT+TGG | + | chr4_2:66650221-66650240 | Msa0616670:intron | 10.0% |
!! | AAATAAAACAAAAACCTAAT+TGG | - | chr4_2:66648224-66648243 | None:intergenic | 15.0% |
!!! | ATTAGGTTTTTGTTTTATTT+TGG | + | chr4_2:66648224-66648243 | Msa0616670:intron | 15.0% |
!!! | TATGCAATTTTTGTTTTTTT+AGG | - | chr4_2:66648570-66648589 | None:intergenic | 15.0% |
!! | CATTGAATAAATAATGTATA+TGG | + | chr4_2:66648753-66648772 | Msa0616670:intron | 15.0% |
!!! | TTTTTACTTATAAATGTGAA+CGG | + | chr4_2:66648828-66648847 | Msa0616670:intron | 15.0% |
!!! | ATATACGTTTTTTATTTTTC+TGG | - | chr4_2:66648864-66648883 | None:intergenic | 15.0% |
!!! | CTATTTATTAATTTTTTCTG+CGG | + | chr4_2:66649585-66649604 | Msa0616670:intron | 15.0% |
!! | GAAAAAAAAATCAAAAAACA+TGG | - | chr4_2:66650037-66650056 | None:intergenic | 15.0% |
!! | AATATTAAACCTTAAACAAT+GGG | - | chr4_2:66650700-66650719 | None:intergenic | 15.0% |
!! | AAATATTAAACCTTAAACAA+TGG | - | chr4_2:66650701-66650720 | None:intergenic | 15.0% |
!!! | ACTTTATTTCACATATAACA+AGG | - | chr4_2:66648171-66648190 | None:intergenic | 20.0% |
!!! | AATTTGCTTATAAATGTGAA+CGG | - | chr4_2:66648507-66648526 | None:intergenic | 20.0% |
!!! | TAAGCAAAACACAATTTTTA+AGG | + | chr4_2:66648728-66648747 | Msa0616670:intron | 20.0% |
!! | CATAGAATAATTAATGTATC+TGG | - | chr4_2:66648792-66648811 | None:intergenic | 20.0% |
!! | ATTAAAAGAGAGAAGATAAA+TGG | - | chr4_2:66649150-66649169 | None:intergenic | 20.0% |
!! | CAATGATATTAGTACTTAAT+AGG | - | chr4_2:66649634-66649653 | None:intergenic | 20.0% |
!!! | TCTTTTCATCATATAATCTT+TGG | - | chr4_2:66649769-66649788 | None:intergenic | 20.0% |
!! | AGCTACAAATTTAGTAATAA+AGG | + | chr4_2:66649802-66649821 | Msa0616670:intron | 20.0% |
!! | GCTACAAATTTAGTAATAAA+GGG | + | chr4_2:66649803-66649822 | Msa0616670:intron | 20.0% |
!!! | ATTTGTAGTTTGCATTTATA+AGG | - | chr4_2:66649835-66649854 | None:intergenic | 20.0% |
!! | TATAAATGCAAACTACAAAT+TGG | + | chr4_2:66649835-66649854 | Msa0616670:intron | 20.0% |
!! | GATATAAATAAATCAGTAAG+CGG | + | chr4_2:66649889-66649908 | Msa0616670:intron | 20.0% |
!!! | TCAAACTATTATTGATGATA+AGG | - | chr4_2:66650213-66650232 | None:intergenic | 20.0% |
!! | TTAAAATTGGAATTAAGTAG+TGG | + | chr4_2:66650234-66650253 | Msa0616670:intron | 20.0% |
!! | TAAAATTGGAATTAAGTAGT+GGG | + | chr4_2:66650235-66650254 | Msa0616670:intron | 20.0% |
!!! | TTTTTTTGCAAGCATTAAAA+TGG | - | chr4_2:66650298-66650317 | None:intergenic | 20.0% |
!!! | CAATTTTTTAGTTGATGTTT+TGG | + | chr4_2:66650660-66650679 | Msa0616670:three_prime_UTR | 20.0% |
!! | ATTTAACCAAAGAAATTCTA+CGG | + | chr4_2:66650717-66650736 | Msa0616670:three_prime_UTR | 20.0% |
! | TAAAGTTAACATGTACTACT+TGG | + | chr4_2:66648185-66648204 | Msa0616670:intron | 25.0% |
! | AAAGTTAACATGTACTACTT+GGG | + | chr4_2:66648186-66648205 | Msa0616670:intron | 25.0% |
! | AAATTGCATATAAATGTGAC+CGG | + | chr4_2:66648580-66648599 | Msa0616670:intron | 25.0% |
! | ATGCATTATTGTACATGATA+TGG | - | chr4_2:66648688-66648707 | None:intergenic | 25.0% |
!! | TTTTCAAAAAATGCATATGC+AGG | + | chr4_2:66648908-66648927 | Msa0616670:intron | 25.0% |
!! | TATTAATTCTGGTGCTAAAT+AGG | - | chr4_2:66649406-66649425 | None:intergenic | 25.0% |
! | TGTGTACAATTTATTACGTA+TGG | - | chr4_2:66649516-66649535 | None:intergenic | 25.0% |
!! | ACAACATAACACTTCATTTT+TGG | - | chr4_2:66649704-66649723 | None:intergenic | 25.0% |
! | TTTATATCTTTCGTTTGTCT+TGG | - | chr4_2:66649877-66649896 | None:intergenic | 25.0% |
!! | ATTTGTTGACCTCAAAATTT+GGG | + | chr4_2:66649976-66649995 | Msa0616670:intron | 25.0% |
! | AAAATTGGAATTAAGTAGTG+GGG | + | chr4_2:66650236-66650255 | Msa0616670:intron | 25.0% |
! | ATGTGAATTGTATATATTGC+AGG | + | chr4_2:66650266-66650285 | Msa0616670:intron | 25.0% |
! | AATGCTTGCAAAAAAAGAAA+TGG | + | chr4_2:66650302-66650321 | Msa0616670:CDS | 25.0% |
! | CTATACAAGTTAAAAACTGA+TGG | - | chr4_2:66650366-66650385 | None:intergenic | 25.0% |
! | ATTTATCTTAAGATGGTAAG+GGG | - | chr4_2:66650466-66650485 | None:intergenic | 25.0% |
! | CATTTATCTTAAGATGGTAA+GGG | - | chr4_2:66650467-66650486 | None:intergenic | 25.0% |
! | TCATTTATCTTAAGATGGTA+AGG | - | chr4_2:66650468-66650487 | None:intergenic | 25.0% |
! | TCTTCTCATTTATCTTAAGA+TGG | - | chr4_2:66650473-66650492 | None:intergenic | 25.0% |
! | TGAAAGATACACTAGTATAT+AGG | - | chr4_2:66650549-66650568 | None:intergenic | 25.0% |
GAAGAAGAAGAATTTGAACT+TGG | + | chr4_2:66648074-66648093 | Msa0616670:CDS | 30.0% | |
AAAGAAGAAGAAGAAGAAGA+AGG | + | chr4_2:66648274-66648293 | Msa0616670:CDS | 30.0% | |
! | GTTTTGCTTATAAATGTGAC+CGG | - | chr4_2:66648718-66648737 | None:intergenic | 30.0% |
! | CGGATTACTCAAAAAACTTT+TGG | - | chr4_2:66649042-66649061 | None:intergenic | 30.0% |
!!! | GTTTTTTGAGTAATCCGTTT+TGG | + | chr4_2:66649045-66649064 | Msa0616670:intron | 30.0% |
TTGAATGAAAGTTTGGTTGA+GGG | - | chr4_2:66649113-66649132 | None:intergenic | 30.0% | |
AGAGATTCAGAAATTACTCA+AGG | + | chr4_2:66649217-66649236 | Msa0616670:intron | 30.0% | |
! | AAGCATTTTCTTTCCACAAT+GGG | - | chr4_2:66649435-66649454 | None:intergenic | 30.0% |
ACAAGAATTAAAGAGAGAGA+GGG | - | chr4_2:66649490-66649509 | None:intergenic | 30.0% | |
TCTCTCTCTTTAATTCTTGT+GGG | + | chr4_2:66649490-66649509 | Msa0616670:intron | 30.0% | |
!!! | TTCATTTTTGGTGCTTAAGT+GGG | - | chr4_2:66649692-66649711 | None:intergenic | 30.0% |
! | ATGAAGTGTTATGTTGTAGA+TGG | + | chr4_2:66649707-66649726 | Msa0616670:intron | 30.0% |
!!! | CAAATTTTGAGGTCAACAAA+TGG | - | chr4_2:66649977-66649996 | None:intergenic | 30.0% |
! | CATTTGTTGACCTCAAAATT+TGG | + | chr4_2:66649975-66649994 | Msa0616670:intron | 30.0% |
! | TAAGGTGAGTTGAAAAAGAA+TGG | - | chr4_2:66650075-66650094 | None:intergenic | 30.0% |
AATAGCATCATCATCTAGTT+AGG | + | chr4_2:66650113-66650132 | Msa0616670:intron | 30.0% | |
TTGCAAAAAAAGAAATGGTG+AGG | + | chr4_2:66650307-66650326 | Msa0616670:CDS | 30.0% | |
! | TTAAAAACTGATGGTGAAGA+TGG | - | chr4_2:66650357-66650376 | None:intergenic | 30.0% |
ACTAGTGTATCTTTCAACAA+AGG | + | chr4_2:66650553-66650572 | Msa0616670:three_prime_UTR | 30.0% | |
CTAGTGTATCTTTCAACAAA+GGG | + | chr4_2:66650554-66650573 | Msa0616670:three_prime_UTR | 30.0% | |
!! | CAATAAACAGTGAAGTGTTG+TGG | - | chr4_2:66648025-66648044 | None:intergenic | 35.0% |
TCTTTCTTCCAAGAGAGTTA+TGG | - | chr4_2:66648053-66648072 | None:intergenic | 35.0% | |
CAAATATCAGAAATGGAAGG+AGG | - | chr4_2:66648114-66648133 | None:intergenic | 35.0% | |
GGACAAATATCAGAAATGGA+AGG | - | chr4_2:66648117-66648136 | None:intergenic | 35.0% | |
AATCTTGCCATCATAGACAA+TGG | - | chr4_2:66648344-66648363 | None:intergenic | 35.0% | |
AGTTTAAAAACTACTCCCTC+CGG | - | chr4_2:66648602-66648621 | None:intergenic | 35.0% | |
CTCTAAATCAACTACCTACA+AGG | - | chr4_2:66649084-66649103 | None:intergenic | 35.0% | |
! | CTTGTAGGTAGTTGATTTAG+AGG | + | chr4_2:66649082-66649101 | Msa0616670:intron | 35.0% |
CTTGAATGAAAGTTTGGTTG+AGG | - | chr4_2:66649114-66649133 | None:intergenic | 35.0% | |
TGAGAGCTTGAATGAAAGTT+TGG | - | chr4_2:66649120-66649139 | None:intergenic | 35.0% | |
! | AATAGTTAGAGCATCCACAA+TGG | + | chr4_2:66649369-66649388 | Msa0616670:intron | 35.0% |
! | AGCATTTTCTTTCCACAATG+GGG | - | chr4_2:66649434-66649453 | None:intergenic | 35.0% |
! | CAAGCATTTTCTTTCCACAA+TGG | - | chr4_2:66649436-66649455 | None:intergenic | 35.0% |
CATTGTGGAAAGAAAATGCT+TGG | + | chr4_2:66649434-66649453 | Msa0616670:intron | 35.0% | |
CACAAGAATTAAAGAGAGAG+AGG | - | chr4_2:66649491-66649510 | None:intergenic | 35.0% | |
CTCTCTCTCTTTAATTCTTG+TGG | + | chr4_2:66649489-66649508 | Msa0616670:intron | 35.0% | |
!!! | ATTAATTTTTTCTGCGGTGC+TGG | + | chr4_2:66649591-66649610 | Msa0616670:intron | 35.0% |
!!! | TTAATTTTTTCTGCGGTGCT+GGG | + | chr4_2:66649592-66649611 | Msa0616670:intron | 35.0% |
!!! | CTTCATTTTTGGTGCTTAAG+TGG | - | chr4_2:66649693-66649712 | None:intergenic | 35.0% |
! | ATAGTTGTGCCCAAATTTTG+AGG | - | chr4_2:66649988-66650007 | None:intergenic | 35.0% |
TCTCTTGAGTGATCACAATA+TGG | - | chr4_2:66650188-66650207 | None:intergenic | 35.0% | |
AATTGTATATATTGCAGGCC+AGG | + | chr4_2:66650271-66650290 | Msa0616670:intron | 35.0% | |
TTCTCCAAAAGAGGAAGAAT+CGG | + | chr4_2:66650427-66650446 | Msa0616670:CDS | 35.0% | |
AATTTCACAGCATGTCTACA+AGG | - | chr4_2:66650636-66650655 | None:intergenic | 35.0% | |
CAGTTTATGCCCATTGTTTA+AGG | + | chr4_2:66650688-66650707 | Msa0616670:three_prime_UTR | 35.0% | |
ACAGAACCGTAGAATTTCTT+TGG | - | chr4_2:66650726-66650745 | None:intergenic | 35.0% | |
!! | AAACAGTGAAGTGTTGTGGA+CGG | - | chr4_2:66648021-66648040 | None:intergenic | 40.0% |
TTGTCACTCCATAACTCTCT+TGG | + | chr4_2:66648042-66648061 | Msa0616670:five_prime_UTR | 40.0% | |
CGTGGGACAAATATCAGAAA+TGG | - | chr4_2:66648121-66648140 | None:intergenic | 40.0% | |
GATGAAGAAGATGCTTACGT+GGG | - | chr4_2:66648138-66648157 | None:intergenic | 40.0% | |
AGATGAAGAAGATGCTTACG+TGG | - | chr4_2:66648139-66648158 | None:intergenic | 40.0% | |
TGTACTACTTGGGAAATACG+TGG | + | chr4_2:66648196-66648215 | Msa0616670:intron | 40.0% | |
GGAAATACGTGGTTCCAATT+AGG | + | chr4_2:66648207-66648226 | Msa0616670:intron | 40.0% | |
! | TGCTGCTTATGATCTTCTTG+TGG | - | chr4_2:66648307-66648326 | None:intergenic | 40.0% |
AAGATCATAAGCAGCAGTAC+AGG | + | chr4_2:66648311-66648330 | Msa0616670:CDS | 40.0% | |
CCATCATAGACAATGGTCAA+CGG | - | chr4_2:66648337-66648356 | None:intergenic | 40.0% | |
TTGCATATAAATGTGACCGG+AGG | + | chr4_2:66648583-66648602 | Msa0616670:intron | 40.0% | |
TGCATATAAATGTGACCGGA+GGG | + | chr4_2:66648584-66648603 | Msa0616670:intron | 40.0% | |
ACAATAATGCATACTCCCTC+CGG | + | chr4_2:66648696-66648715 | Msa0616670:intron | 40.0% | |
TGCTTATAAATGTGACCGGA+GGG | - | chr4_2:66648714-66648733 | None:intergenic | 40.0% | |
TTGCTTATAAATGTGACCGG+AGG | - | chr4_2:66648715-66648734 | None:intergenic | 40.0% | |
!!! | AACTTTTGGTGACGTTCAAG+AGG | - | chr4_2:66649028-66649047 | None:intergenic | 40.0% |
GAGAACAGATCTCTCCAAAA+CGG | - | chr4_2:66649062-66649081 | None:intergenic | 40.0% | |
TCAAGGAGAGTTTGATCAAG+AGG | + | chr4_2:66649234-66649253 | Msa0616670:intron | 40.0% | |
!! | ATGGGGGTGCTTATTAATTC+TGG | - | chr4_2:66649417-66649436 | None:intergenic | 40.0% |
ATTAATAAGCACCCCCATTG+TGG | + | chr4_2:66649419-66649438 | Msa0616670:intron | 40.0% | |
! | GCATTTTCTTTCCACAATGG+GGG | - | chr4_2:66649433-66649452 | None:intergenic | 40.0% |
! | TTGGTGCTTACAGAGAAATG+TGG | + | chr4_2:66649453-66649472 | Msa0616670:intron | 40.0% |
CCAACTTCACTTCATTCACA+AGG | - | chr4_2:66649931-66649950 | None:intergenic | 40.0% | |
CCTTGTGAATGAAGTGAAGT+TGG | + | chr4_2:66649928-66649947 | Msa0616670:intron | 40.0% | |
ACAAATGGATGCAGTGCATT+TGG | - | chr4_2:66649962-66649981 | None:intergenic | 40.0% | |
AGCATCATCATCTAGTTAGG+AGG | + | chr4_2:66650116-66650135 | Msa0616670:intron | 40.0% | |
TGCAAGCATTAAAATGGACC+TGG | - | chr4_2:66650292-66650311 | None:intergenic | 40.0% | |
!! | GCATGGAAAGAGAAGTACTA+GGG | - | chr4_2:66650389-66650408 | None:intergenic | 40.0% |
!! | TGCATGGAAAGAGAAGTACT+AGG | - | chr4_2:66650390-66650409 | None:intergenic | 40.0% |
! | GAATCCGATTCTTCCTCTTT+TGG | - | chr4_2:66650434-66650453 | None:intergenic | 40.0% |
CCGTTGACCATTGTCTATGA+TGG | + | chr4_2:66648334-66648353 | Msa0616670:CDS | 45.0% | |
TGAACACACCTGAATCTCAG+TGG | - | chr4_2:66648380-66648399 | None:intergenic | 45.0% | |
TGCAGGTCTTACTACACATG+TGG | + | chr4_2:66648925-66648944 | Msa0616670:intron | 45.0% | |
GAGAGATCTGTTCTCCTTGT+AGG | + | chr4_2:66649067-66649086 | Msa0616670:intron | 45.0% | |
! | AGTTAGAGCATCCACAATGG+TGG | + | chr4_2:66649372-66649391 | Msa0616670:intron | 45.0% |
! | GTTAGAGCATCCACAATGGT+GGG | + | chr4_2:66649373-66649392 | Msa0616670:intron | 45.0% |
! | CCTCTGCAACGATTTTTGCA+TGG | - | chr4_2:66650406-66650425 | None:intergenic | 45.0% |
CCATGCAAAAATCGTTGCAG+AGG | + | chr4_2:66650403-66650422 | Msa0616670:CDS | 45.0% | |
TGCAGAGGTTTCTCCAAAAG+AGG | + | chr4_2:66650418-66650437 | Msa0616670:CDS | 45.0% | |
GACTGATGCCACTGAGATTC+AGG | + | chr4_2:66648369-66648388 | Msa0616670:CDS | 50.0% | |
AGGTGAAGAACCCACCATTG+TGG | - | chr4_2:66649386-66649405 | None:intergenic | 50.0% | |
!!! | TTTTTTCTGCGGTGCTGGGT+TGG | + | chr4_2:66649596-66649615 | Msa0616670:intron | 50.0% |
GAAATGGTGAGGACACCAAC+TGG | + | chr4_2:66650318-66650337 | Msa0616670:CDS | 50.0% | |
! | GGCTCTGATGATGATCCAGT+TGG | - | chr4_2:66650336-66650355 | None:intergenic | 50.0% |
! | CGGTGCTGGGTTGGAGAAAT+TGG | + | chr4_2:66649605-66649624 | Msa0616670:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 66647985 | 66650754 | 66647985 | ID=Msa0616670;Name=Msa0616670 |
chr4_2 | mRNA | 66647985 | 66650754 | 66647985 | ID=Msa0616670-mRNA-1;Parent=Msa0616670;Name=Msa0616670-mRNA-1;_AED=0.12;_eAED=0.12;_QI=87|1|1|1|1|1|3|257|132 |
chr4_2 | exon | 66647985 | 66648139 | 66647985 | ID=Msa0616670-mRNA-1:exon:18965;Parent=Msa0616670-mRNA-1 |
chr4_2 | exon | 66648270 | 66648390 | 66648270 | ID=Msa0616670-mRNA-1:exon:18966;Parent=Msa0616670-mRNA-1 |
chr4_2 | exon | 66650288 | 66650754 | 66650288 | ID=Msa0616670-mRNA-1:exon:18967;Parent=Msa0616670-mRNA-1 |
chr4_2 | five_prime_UTR | 66647985 | 66648071 | 66647985 | ID=Msa0616670-mRNA-1:five_prime_utr;Parent=Msa0616670-mRNA-1 |
chr4_2 | CDS | 66648072 | 66648139 | 66648072 | ID=Msa0616670-mRNA-1:cds;Parent=Msa0616670-mRNA-1 |
chr4_2 | CDS | 66648270 | 66648390 | 66648270 | ID=Msa0616670-mRNA-1:cds;Parent=Msa0616670-mRNA-1 |
chr4_2 | CDS | 66650288 | 66650497 | 66650288 | ID=Msa0616670-mRNA-1:cds;Parent=Msa0616670-mRNA-1 |
chr4_2 | three_prime_UTR | 66650498 | 66650754 | 66650498 | ID=Msa0616670-mRNA-1:three_prime_utr;Parent=Msa0616670-mRNA-1 |
Gene Sequence |
Protein sequence |