AlfalfaGEDB | Msa0618380

M. sativa cultivar zhongmu-4 / Msa0618380

KEGG: -
GO: -
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0618380	AET04474.1	92.308	156	12	0	1	156	1	156	1.93e-95	283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0618380	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 30 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTTGTTACGAACAG+TGG	0.644687	4_2:-69344128	Msa0618380:CDS
AAATGAAATTGGCCTTGGAG+CGG	0.608265	4_2:-69343716	Msa0618380:CDS
AGATGAGTCATCTCCAGAAG+AGG	0.604525	4_2:-69343776	Msa0618380:CDS
AGCAACTCCAGCATGGCGCC+AGG	0.436034	4_2:-69344246	Msa0618380:CDS
ATCTGAATCAGAAACATCAA+TGG	0.539843	4_2:+69344067	None:intergenic
ATTCTCAAACTACGTCTCTT+TGG	0.299791	4_2:+69343874	None:intergenic
CAATCAGAAGATGACACCGA+TGG	0.614119	4_2:-69343848	Msa0618380:CDS
CATAAAACTGGCTTGTCTTT+TGG	0.254968	4_2:+69344221	None:intergenic
CATCACCAGCAACTCCAGCA+TGG	0.651498	4_2:-69344253	Msa0618380:CDS
CCAAGGCCAATTTCATTTGA+AGG	0.421742	4_2:+69343721	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTGAATCAGAAACATCAA+TGG	+	chr4_2:69343880-69343899	None:intergenic	30.0%
TGGACTAAGATACCAAAACT+GGG	-	chr4_2:69343755-69343774	Msa0618380:CDS	35.0%
GAAAACAACGTTTGAGAGAA+TGG	+	chr4_2:69343794-69343813	None:intergenic	35.0%
ATTCTCAAACTACGTCTCTT+TGG	+	chr4_2:69344073-69344092	None:intergenic	35.0%
TCTTGTTGAAACTTCTCCAT+CGG	+	chr4_2:69344115-69344134	None:intergenic	35.0%
CCACATGCATTGCATAAAAC+TGG	+	chr4_2:69343738-69343757	None:intergenic	40.0%
GGACTAAGATACCAAAACTG+GGG	-	chr4_2:69343756-69343775	Msa0618380:CDS	40.0%
GTTTGAGAGAATGGTCTTTG+AGG	+	chr4_2:69343785-69343804	None:intergenic	40.0%
TCAAACAATAAGGCCTCTTC+TGG	+	chr4_2:69344184-69344203	None:intergenic	40.0%
CCAAGGCCAATTTCATTTGA+AGG	+	chr4_2:69344226-69344245	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	69343684	69344282	69343684	ID=Msa0618380;Name=Msa0618380
chr4_2	mRNA	69343684	69344282	69343684	ID=Msa0618380-mRNA-1;Parent=Msa0618380;Name=Msa0618380-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|0\|0\|1\|1\|1\|2\|0\|156
chr4_2	exon	69344063	69344282	69344063	ID=Msa0618380-mRNA-1:exon:20050;Parent=Msa0618380-mRNA-1
chr4_2	exon	69343684	69343934	69343684	ID=Msa0618380-mRNA-1:exon:20049;Parent=Msa0618380-mRNA-1
chr4_2	CDS	69344063	69344282	69344063	ID=Msa0618380-mRNA-1:cds;Parent=Msa0618380-mRNA-1
chr4_2	CDS	69343684	69343934	69343684	ID=Msa0618380-mRNA-1:cds;Parent=Msa0618380-mRNA-1

Gene Sequence

>Msa0618380

ATGGATTCATCACCAGCAACTCCAGCATGGCGCCAGGGACCAAAAGACAAGCCAGTTTTATGCAATGCATGTGGACTAAGATACCAAAACTGGGGAAACCTCAAAGACCATTCTCTCAAACGTTGTTTTCCAAAAGAACTTGTTACGAACAGTGGCAACAGTAGCAACAACAGTCTCAAAGAAAGTTCATCAACCATTGATGTTTCTGATTCAGATAATGATGAAAAAGATTCAGATTCATGCAAGTCTGCAGTCTCTCCAAAGAGACGTAGTTTGAGAATTATCAATCAGAAGATGACACCGATGGAGAAGTTTCAACAAGAACTTCTCGATGAGTTGAAAAATCACGAGATACCAGATGAGTCATCTCCAGAAGAGGCCTTATTGTTTGAAAATGTGAACAACTTCATACCTTCAAATGAAATTGGCCTTGGAGCGGTTCTTCTTAAACCAGACGGTTCTTCTATGTAG

Protein sequence

>Msa0618380

MDSSPATPAWRQGPKDKPVLCNACGLRYQNWGNLKDHSLKRCFPKELVTNSGNSSNNSLKESSSTIDVSDSDNDEKDSDSCKSAVSPKRRSLRIINQKMTPMEKFQQELLDELKNHEIPDESSPEEALLFENVNNFIPSNEIGLGAVLLKPDGSSM*