AlfalfaGEDB | Msa0623300

M. sativa cultivar zhongmu-4 / Msa0623300

KEGG: K04733
GO: -
PFAM: PF13947.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623300	KEH44496.1	89.466	674	51	3	1	655	1	673	0.0	1216

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623300	sp\|Q9FF31\|LRL21_ARATH	39.329	656	343	19	6	647	12	626	5.25e-142	431

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623300	A0A072VS42	89.466	674	51	3	1	655	1	673	0.0	1216

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0623300	MtrunA17_Chr7g0251071	71.108	668	162	13	6	657	18	670	943
Msa0623300	MtrunA17_Chr7g0251061	68.533	661	182	15	7	657	20	664	868
Msa0623300	MtrunA17_Chr7g0251101	66.027	677	183	14	7	657	20	675	855
Msa0623300	MtrunA17_Chr7g0251051	67.391	644	158	13	18	654	28	626	828
Msa0623300	MtrunA17_Chr1g0212821	95.855	386	16	0	273	658	14	399	762
Msa0623300	MtrunA17_Chr7g0251001	81.963	377	66	2	284	658	1	377	638
Msa0623300	MtrunA17_Chr7g0251081	75.297	421	75	7	221	633	2	401	623
Msa0623300	MtrunA17_Chr7g0250741	73.385	387	96	4	271	654	465	847	579
Msa0623300	MtrunA17_Chr7g0250931	69.307	404	119	3	256	655	460	862	578
Msa0623300	MtrunA17_Chr4g0022331	69.010	384	117	2	258	640	449	831	562

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623300	AT5G38260.1	39.329	656	343	19	6	647	12	626	5.33e-143	431
Msa0623300	AT1G66910.2	38.832	685	350	22	4	658	16	661	1.19e-142	431
Msa0623300	AT1G66920.2	41.167	634	313	20	32	656	33	615	4.34e-142	428
Msa0623300	AT1G66910.1	39.270	685	350	22	4	658	16	664	5.33e-142	429
Msa0623300	AT1G66920.1	40.284	633	312	20	32	656	33	607	1.01e-139	421
Msa0623300	AT1G67000.1	40.752	638	314	22	26	630	248	854	6.85e-137	423
Msa0623300	AT1G66930.2	40.852	634	317	21	32	638	252	854	3.37e-132	410
Msa0623300	AT1G66930.2	26.577	222	145	7	48	267	46	251	3.96e-13	73.6
Msa0623300	AT5G38240.2	40.382	629	307	22	20	633	27	602	1.93e-130	398
Msa0623300	AT5G38250.1	39.715	632	314	20	35	654	40	616	2.05e-129	395

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Find 138 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCGAGCTGCACAACT+TGG	0.468588	4_3:-485312	Msa0623300:CDS
AAACCTCAAGTATCCGTTCT+GGG	0.466254	4_3:-485748	Msa0623300:CDS
AAAGTAATAAACGAGGTAAA+GGG	0.389721	4_3:-482294	Msa0623300:CDS
AAAGTAATAGAAATGTTGGA+AGG	0.551674	4_3:-481571	Msa0623300:CDS
AAATCTGATATATATAGTTA+TGG	0.488656	4_3:-481820	Msa0623300:CDS
AAATTAGGCCAAGGAGGATA+TGG	0.353084	4_3:-482363	Msa0623300:CDS
AAATTGTTTGACAATCTCAG+AGG	0.704320	4_3:-481677	Msa0623300:CDS
AACCTCAAGTATCCGTTCTG+GGG	0.642300	4_3:-485747	Msa0623300:CDS
AACTCATTCCGAGATAAATT+AGG	0.407588	4_3:-482378	Msa0623300:CDS
AACTGATCCAACGATCCTTG+GGG	0.663564	4_3:+482150	None:intergenic

Showing 1 to 10 of 138 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAGACATGATGGTATAATAT+TGG	+	chr4_3:481487-481506	None:intergenic	30.0%
TGTGAATGATGATCCTAATA+TGG	-	chr4_3:481623-481642	Msa0623300:CDS	30.0%
ATCAGTGATGCAATAAAAGA+TGG	-	chr4_3:482050-482069	Msa0623300:CDS	30.0%
ATTATTTACATACTTGAGGC+TGG	+	chr4_3:482221-482240	None:intergenic	30.0%
GGAAATAAGAACGTCAAATT+TGG	+	chr4_3:482754-482773	None:intergenic	30.0%
TACATTGCTTAAAAAAGTGG+AGG	-	chr4_3:482892-482911	Msa0623300:intron	30.0%
ACACAAATTAAGATGAAAGC+TGG	-	chr4_3:483015-483034	Msa0623300:intron	30.0%
TTACAAATTAACCCACAAAG+AGG	+	chr4_3:483063-483082	None:intergenic	30.0%
TATTGTTCTAACATATAGGG+TGG	+	chr4_3:483256-483275	None:intergenic	30.0%
GCTTGCAAAACTATTAGTTA+AGG	-	chr4_3:483312-483331	Msa0623300:intron	30.0%

Showing 1 to 10 of 271 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	481444	485901	481444	ID=Msa0623300;Name=Msa0623300
chr4_3	mRNA	481444	485901	481444	ID=Msa0623300-mRNA-1;Parent=Msa0623300;Name=Msa0623300-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|0\|0\|1\|1\|1\|3\|0\|658
chr4_3	exon	485118	485901	485118	ID=Msa0623300-mRNA-1:exon:147;Parent=Msa0623300-mRNA-1
chr4_3	exon	482733	482765	482733	ID=Msa0623300-mRNA-1:exon:146;Parent=Msa0623300-mRNA-1
chr4_3	exon	481444	482603	481444	ID=Msa0623300-mRNA-1:exon:145;Parent=Msa0623300-mRNA-1
chr4_3	CDS	485118	485901	485118	ID=Msa0623300-mRNA-1:cds;Parent=Msa0623300-mRNA-1
chr4_3	CDS	482733	482765	482733	ID=Msa0623300-mRNA-1:cds;Parent=Msa0623300-mRNA-1
chr4_3	CDS	481444	482603	481444	ID=Msa0623300-mRNA-1:cds;Parent=Msa0623300-mRNA-1

Gene Sequence

>Msa0623300

ATGAAGTTGTTTGTTCTAGCACTTTTGATGATCTCAATCACCAATATTATACCATCATGTCTCTGTGAGAATGATGATATCCAACACACCAACTGCAACGACCCTTTTATCTGCGAAAGTAGCAACATCACAAACCTCAAGTATCCGTTCTGGGGAGGAAATAGAGGAAAGTATTGCGGTGTGAATGATGATCCTAATATGGAACTCACATGTGAGGACAGTGTCCCCAAGTTAACAATGGATAATTCTTACCTGAAATACAGTATTCTTGAATGGGACAATTCAACACAGAAGCTCAGAGTTATTAGGGAAGATAGCTCGAGAGGTGATATTTGTGTTATTATCGCCAACTTCACATTCAATAGCCCTTTGTTTAAATTTTATGACGACGTCGTTAACGTGACTTTGATTTACGGTTGCCTTTCTACAACTGAAACTCTACCGAATACGTTTCACAGTGTTGACTGTATTGATAATTCATCAGTTTTGTACACCGTTGTTGATCCTGATACAGCTACTTACCCGGACTTCTGTTATAATGTGAGTACTTTCATGATTCCGATTTCAAAAACCCGAGCTGCACAACTTGGATCTGGCAATGGGACAATCAGTGATGCAATAAAAGATGGTTTTGTTTTGAAATGGACAGGAGATTATGGAGAGTGTCAAAGGTGCGTTGTTTCTGGTGGTGCCTGTGGGAACGATGGAGGAAGTGAATTCCGATGTTTCTGTAAAGATGGACCTCATACAACATCATGCAATTCAGAAAATTCTCCAGCCTCAAGTTCAAAACGGAAGAGGAAGCTTATTGTGATAGGTGTTTCAGGATCTGGAGCAACAGTATTCTTCATTATTCTTATTATTATGATTATTTGTCACCTTAAAAGGAGTACATCTGGACAACAAAGTATTTTCAGAAAGAGAAGAAAACTTGTTGACCACAATGTCGAGGTTTTCATGCAAAGTTATGAATCATCTATGCCAAGAAGATATAGTTATAGAGAAATAAAAAGGATCACAAACTCATTCCGAGATAAATTAGGCCAAGGAGGATATGGTGTTGTATACAAAGCAAGTTTACCTGATGGTCGTCCAGTGGCTGTTAAAGTAATAAACGAGGTAAAGGGGGATGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAGAACATCACACGTGAACATTGTGTCACTTTTAGGCTATTGTTATGAGGTGAACAAAAGAGTACTAATATATGAATTCATGCCCCAAGGATCGTTGGATCAGTTCATTTATAAAAGTGGATTTTCTGAAGCTGTTTGTGATTTTAATTGGAACACTTTGTTCCAAATTGCAATTGGCATTGCTAAAGGACTAGAGTACTTGCATCAAGGATGTAGTTCAAGGATTCTGCATCTTGATATCAAACCTCAAAACATTCTTTTGGATGAAGACTTTTGCCCAAAAATATCTGATTTTGGATTAGCAAAAATATGCCAAAGGAAGGATAGTGTTGTGTCAATACTTGGCACAAGAGGAACCATAGGATATATGGCGCCAGAAGTATATAGTAGAGCATTTGGTGGTGTTTCTTACAAATCTGATATATATAGTTATGGCATGTTGATTCTTGAAATGATTGGAGGAAGAAAGAACTATGACACTGGAGGGTCATGTACTTCAGAAATGTACTTTCCAGACTGGATTTATAAGGATCTTGAGCAAGGTAATACTCTTTCAAATTGTTTGACAATCTCAGAGGAAGAAAATGATATGGTTAGAAAGATTACTTTGGTGAGTCTATGGTGCATTCAAACGAAACCATCGGATAGACCACAGATGAATAAAGTAATAGAAATGTTGGAAGGGCCGCTTTCATTGGTGCCATATCCTCCAAAGCCCGTCCTATGTTCTCCTGAAAGGCCACCACTAGAATTGTCAGATATGTCTTCGTCCAATTTGTATGAGACGAATTCAATTACAACGTCAAACTAA

Protein sequence

>Msa0623300

MKLFVLALLMISITNIIPSCLCENDDIQHTNCNDPFICESSNITNLKYPFWGGNRGKYCGVNDDPNMELTCEDSVPKLTMDNSYLKYSILEWDNSTQKLRVIREDSSRGDICVIIANFTFNSPLFKFYDDVVNVTLIYGCLSTTETLPNTFHSVDCIDNSSVLYTVVDPDTATYPDFCYNVSTFMIPISKTRAAQLGSGNGTISDAIKDGFVLKWTGDYGECQRCVVSGGACGNDGGSEFRCFCKDGPHTTSCNSENSPASSSKRKRKLIVIGVSGSGATVFFIILIIMIICHLKRSTSGQQSIFRKRRKLVDHNVEVFMQSYESSMPRRYSYREIKRITNSFRDKLGQGGYGVVYKASLPDGRPVAVKVINEVKGDGEEFINEVASISRTSHVNIVSLLGYCYEVNKRVLIYEFMPQGSLDQFIYKSGFSEAVCDFNWNTLFQIAIGIAKGLEYLHQGCSSRILHLDIKPQNILLDEDFCPKISDFGLAKICQRKDSVVSILGTRGTIGYMAPEVYSRAFGGVSYKSDIYSYGMLILEMIGGRKNYDTGGSCTSEMYFPDWIYKDLEQGNTLSNCLTISEEENDMVRKITLVSLWCIQTKPSDRPQMNKVIEMLEGPLSLVPYPPKPVLCSPERPPLELSDMSSSNLYETNSITTSN*