AlfalfaGEDB | Msa0624200

M. sativa cultivar zhongmu-4 / Msa0624200

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0624200	KEH19503.1	96.765	711	22	1	1	710	1	711	0.0	1419

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0624200	sp\|Q56XZ1\|SHB_ARATH	48.324	716	313	12	1	711	1	664	0.0	630

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0624200	A0A072TRN9	96.765	711	22	1	1	710	1	711	0.0	1419

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TFs/TRs:

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Gene ID	Type	Classification
Msa0624200	TF	STAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0624200	MtrunA17_Chr8g0359041	96.629	712	23	1	1	711	1	712	0.0	1398

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0624200	AT1G78540.1	48.324	716	313	12	1	711	1	664	630
Msa0624200	AT1G78540.2	48.392	715	312	12	1	710	1	663	630
Msa0624200	AT1G17040.1	47.141	717	293	10	1	711	1	637	618
Msa0624200	AT1G17040.2	46.630	727	292	11	1	711	1	647	610
Msa0624200	AT1G78540.3	47.453	687	304	12	1	682	1	635	592
Msa0624200	AT1G17040.3	46.366	688	283	10	1	682	1	608	582

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Find 205 sgRNAs with CRISPR-Local

Find 970 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACCCACTGATGAAG+AGG	0.534477	4_3:+2181576	Msa0624200:CDS
AAACCTCTTCATCAGTGGGT+TGG	0.490109	4_3:-2181579	None:intergenic
AAAGGATAATCTCCTAATTT+TGG	0.151104	4_3:-2181383	None:intergenic
AAAGTTGCCTAGGTTGTATT+GGG	0.350465	4_3:+2189867	Msa0624200:CDS
AAATTCACCTTCAAATAGCA+TGG	0.570364	4_3:+2184926	Msa0624200:CDS
AACCCCACCATAAAGCAATC+TGG	0.385813	4_3:+2181641	Msa0624200:CDS
AACCTTTGTGGAGACAGTAG+TGG	0.645377	4_3:+2178637	Msa0624200:CDS
AACGAGAAAAGGAGCACTTT+CGG	0.410857	4_3:-2177668	None:intergenic
AAGAAGAAAGTGATGGTGTT+TGG	0.389600	4_3:+2178919	Msa0624200:CDS
AAGAATGGTGGTAGGGAATG+TGG	0.550704	4_3:-2176265	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGAAACCAAACCAAAAT+CGG	-	chr4_3:2176114-2176133	None:intergenic	30.0%
ATGAAATGAGAAGAAACGAA+GGG	+	chr4_3:2176154-2176173	Msa0624200:CDS	30.0%
ATGATTAACCTGATGAAGAA+TGG	-	chr4_3:2176283-2176302	None:intergenic	30.0%
TTCAAAATGTACAACTTGAG+GGG	-	chr4_3:2176427-2176446	None:intergenic	30.0%
TGAAAAATGTATTGTGCGAT+CGG	+	chr4_3:2176609-2176628	Msa0624200:intron	30.0%
ACTTGAGAACTATGTATGAA+TGG	-	chr4_3:2176641-2176660	None:intergenic	30.0%
ATACTACTCGATGTGAAAAT+CGG	-	chr4_3:2176702-2176721	None:intergenic	30.0%
ATAGAGACTTGGGTATTATA+GGG	+	chr4_3:2176912-2176931	Msa0624200:intron	30.0%
CCCTTAAAATCTAGCTATAA+TGG	-	chr4_3:2177011-2177030	None:intergenic	30.0%
AAACATGCAAACAGAAAAAG+GGG	-	chr4_3:2177251-2177270	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	2175981	2189921	2175981	ID=Msa0624200;Name=Msa0624200
chr4_3	mRNA	2175981	2189921	2175981	ID=Msa0624200-mRNA-1;Parent=Msa0624200;Name=Msa0624200-mRNA-1;_AED=0.11;_eAED=0.14;_QI=163\|0.90\|0.91\|1\|1\|1\|12\|0\|734
chr4_3	exon	2175981	2176293	2175981	ID=Msa0624200-mRNA-1:exon:558;Parent=Msa0624200-mRNA-1
chr4_3	exon	2177652	2177840	2177652	ID=Msa0624200-mRNA-1:exon:559;Parent=Msa0624200-mRNA-1
chr4_3	exon	2178520	2178729	2178520	ID=Msa0624200-mRNA-1:exon:560;Parent=Msa0624200-mRNA-1
chr4_3	exon	2178870	2178959	2178870	ID=Msa0624200-mRNA-1:exon:561;Parent=Msa0624200-mRNA-1
chr4_3	exon	2179445	2179522	2179445	ID=Msa0624200-mRNA-1:exon:562;Parent=Msa0624200-mRNA-1
chr4_3	exon	2179626	2179790	2179626	ID=Msa0624200-mRNA-1:exon:563;Parent=Msa0624200-mRNA-1
chr4_3	exon	2181335	2181703	2181335	ID=Msa0624200-mRNA-1:exon:564;Parent=Msa0624200-mRNA-1
chr4_3	exon	2184828	2185114	2184828	ID=Msa0624200-mRNA-1:exon:565;Parent=Msa0624200-mRNA-1
chr4_3	exon	2187628	2187790	2187628	ID=Msa0624200-mRNA-1:exon:566;Parent=Msa0624200-mRNA-1
chr4_3	exon	2188448	2188797	2188448	ID=Msa0624200-mRNA-1:exon:567;Parent=Msa0624200-mRNA-1
chr4_3	exon	2189632	2189709	2189632	ID=Msa0624200-mRNA-1:exon:568;Parent=Msa0624200-mRNA-1
chr4_3	exon	2189846	2189921	2189846	ID=Msa0624200-mRNA-1:exon:569;Parent=Msa0624200-mRNA-1
chr4_3	five_prime_UTR	2175981	2176143	2175981	ID=Msa0624200-mRNA-1:five_prime_utr;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2176144	2176293	2176144	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2177652	2177840	2177652	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2178520	2178729	2178520	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2178870	2178959	2178870	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2179445	2179522	2179445	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2179626	2179790	2179626	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2181335	2181703	2181335	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2184828	2185114	2184828	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2187628	2187790	2187628	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2188448	2188797	2188448	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2189632	2189709	2189632	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1
chr4_3	CDS	2189846	2189921	2189846	ID=Msa0624200-mRNA-1:cds;Parent=Msa0624200-mRNA-1

Gene Sequence

>Msa0624200

ATGGGTAATGATGAAATGAGAAGAAACGAAGGGTACTGTAAGCTGAAAGATTTATGTTTGGATTTTGTTGAATATGATGGAACTTTCTCTTTCTGCTTTTGGATTTATCTCACTAAATCAACCACATTCCCTACCACCATTCTTCATCAGATTCACTCTGACATTTCCGAAAGTGCTCCTTTTCTCGTTATCAACAATAATAAGAGAATCAATGTTTTGCCAGTTCTTTACTTACATGAAGAAGCTCCTGTTACTTGCATGGGTCCTTGGACAGAAGTTCCACATGTTACTGTTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAAATTATATTCGGCTTCACATTAATGGGGAGATTGTAGGAGAAAAGTCACTGTCTTCCTTATTACATAAGGAATCCAATTCAAGTAATTTGAAGGAAATACATTTGGCCAACCTTTGTGGAGACAGTAGTGGTGTGCAGGGTTACGTGTACAATTATGAAGGATTCGATACTGTTTCTTCTATCAAAGATCATCATTTAAAGGACCCTCCTCTGAAGTTATCAATAGATGAATCATCCATATCTGAGGTTGAAGAAGAAAGTGATGGTGTTTGGGGCATTGTTGGTGGTAAAGCATCTTGTCGCAGGAATGTCTCTTTAGACGTTGTTTTATCAGATGCATTTGGACAGCCTGTTGATATGGAGAATGAGGTTTTTGCTTCACTTGTGTATGCTGACACGGGGGCTCCAGTCGAGAATACAACTGATGACGAAGCACCCCTTTTGTCTAGCTATGATGGAATTGAATTTTCTTCTTGTGAAAGGCCTAGTAAATTTTTGTTGGGTCGTGCATCATTTAAGCTCAGGATATCTCAGCTTTCATCCAAGTGTGATAGCAGGTTGTTCCTCATCAGATTTTGTGTTCCAAAATTAGGAGATTATCCTTTCCTTCAGACAAACACCCGTCCGATTCGATGCATCTCCAGGAGCCGTAACACAAAATTATCCACGCTGGTGTGGAAAAAGTCAACTTATGCTCTTGAAAGACTCAATTTGTCGCAATCTTCAGCAATTGATGATGTGTCATTGGAAAGTATGAATTCTGGCCACGAAGAAAAAACCAACCCACTGATGAAGAGGTTTAGAGTTGGACTTGACAAGATATCTGTATCAGTTAAGGCCAACCCCACCATAAAGCAATCTGGGGTAGAATGTAATAATTCTCATGTATGGACTGCTAATCAGGTTGAGAATGGGTTTCCAAAAAGCTTGGATGGCCGATCTCTTAACTTTGAAGAAGCAGATGTCTCTCCATCTGAATCATCAGAGAGTACAGGGGAGAGAAATTCACCTTCAAATAGCATGGAAAGTAGAAGATATCAAATATCGGATATGACCATTTTCAAATACTGTCTGGCAGGCTTGGCTGAGAGATCTCAAATGCTTAAAGAAATTGCCATCTCTGCTTCAGACAAAGAAATTTCAGAGTTGGCTCATCATGTTTCACACTTTTCAGGATGTTCCCACCACAGAAACCAAATATTAATTTCCAAGAGATTGATAGAAGATGGAACTAATCTTTGGCTGGCAATGTCTCCAAACAACCACCCCATTCCTTGGAAGAGCGCAGTGTATGAGGTTGAAGAGCAATTCATGAAGATTGCTTCTTGTGGGTCAAGATCTCTCTCTCATCAGGACCTTGAGATTCTAAGAAGCATTGCGGGATGTCAAGAGTATCTATCACTAGAGAACTTTGAGAAGTTATGGTGCTGGTTGTACCCTGTAGCGTGTGTAATATCCAGGGACTGGGTAAATGCTATCTGGAATTCCATGTCACCTAAATGGATTGAAGGATTCATCACCAAGGAGGAGGCAGAAGCTTCACTTCAAGGTCCAGGAGGATTTCAAGAACGTGGTACTTTTATACTTCGGTTCCCCACCTCAAGAAGCTGGCCCCACCCAGATGCCGGTTGCCTAATTGTTACATATGTTGGGAATGACTACAAACTTCGCCACAAACTACTTTCAATGGATCATATATACGGCTCTGATAATCAAAGAATAGATGTAAAACCATTGCAAGATATGCTACTGGCAGAACCTGAGCTGTCCCGTTTGGGAAGAATGTCCCTTAATTTCCAGTCAAAGTTGCCTAGGTTGTATTGGGATTATAGATTCACAAAGGAGGATGGGTTCTAG

Protein sequence

>Msa0624200

MGNDEMRRNEGYCKLKDLCLDFVEYDGTFSFCFWIYLTKSTTFPTTILHQIHSDISESAPFLVINNNKRINVLPVLYLHEEAPVTCMGPWTEVPHVTVDFEFPLEKWVHVGCEVCPNYIRLHINGEIVGEKSLSSLLHKESNSSNLKEIHLANLCGDSSGVQGYVYNYEGFDTVSSIKDHHLKDPPLKLSIDESSISEVEEESDGVWGIVGGKASCRRNVSLDVVLSDAFGQPVDMENEVFASLVYADTGAPVENTTDDEAPLLSSYDGIEFSSCERPSKFLLGRASFKLRISQLSSKCDSRLFLIRFCVPKLGDYPFLQTNTRPIRCISRSRNTKLSTLVWKKSTYALERLNLSQSSAIDDVSLESMNSGHEEKTNPLMKRFRVGLDKISVSVKANPTIKQSGVECNNSHVWTANQVENGFPKSLDGRSLNFEEADVSPSESSESTGERNSPSNSMESRRYQISDMTIFKYCLAGLAERSQMLKEIAISASDKEISELAHHVSHFSGCSHHRNQILISKRLIEDGTNLWLAMSPNNHPIPWKSAVYEVEEQFMKIASCGSRSLSHQDLEILRSIAGCQEYLSLENFEKLWCWLYPVACVISRDWVNAIWNSMSPKWIEGFITKEEAEASLQGPGGFQERGTFILRFPTSRSWPHPDAGCLIVTYVGNDYKLRHKLLSMDHIYGSDNQRIDVKPLQDMLLAEPELSRLGRMSLNFQSKLPRLYWDYRFTKEDGF*