Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628510 | XP_013454752.1 | 96.575 | 292 | 8 | 2 | 1 | 291 | 1 | 291 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628510 | sp|Q9S7T5|OFP14_ARATH | 36.538 | 312 | 144 | 11 | 1 | 280 | 1 | 290 | 3.47e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628510 | A0A072UI43 | 96.575 | 292 | 8 | 2 | 1 | 291 | 1 | 291 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0628510 | TF | OFP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628510 | MtrunA17_Chr4g0004341 | 96.575 | 292 | 8 | 2 | 1 | 291 | 1 | 291 | 0.0 | 565 |
| Msa0628510 | MtrunA17_Chr2g0331871 | 48.742 | 318 | 128 | 9 | 1 | 290 | 1 | 311 | 5.87e-84 | 254 |
| Msa0628510 | MtrunA17_Chr1g0185481 | 56.061 | 66 | 26 | 2 | 186 | 249 | 199 | 263 | 2.27e-15 | 74.3 |
| Msa0628510 | MtrunA17_Chr7g0259991 | 47.826 | 69 | 34 | 1 | 183 | 249 | 129 | 197 | 2.43e-13 | 67.8 |
| Msa0628510 | MtrunA17_Chr1g0205341 | 30.370 | 135 | 74 | 4 | 119 | 249 | 58 | 176 | 6.94e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628510 | AT1G79960.1 | 36.538 | 312 | 144 | 11 | 1 | 280 | 1 | 290 | 3.52e-41 | 144 |
| Msa0628510 | AT4G14860.1 | 52.542 | 59 | 27 | 1 | 192 | 249 | 109 | 167 | 2.51e-13 | 67.4 |
| Msa0628510 | AT1G05420.2 | 34.343 | 99 | 63 | 1 | 153 | 249 | 133 | 231 | 7.44e-12 | 64.3 |
| Msa0628510 | AT1G05420.1 | 34.343 | 99 | 63 | 1 | 153 | 249 | 117 | 215 | 7.54e-12 | 64.3 |
Find 54 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGACCAATCCATTTCTTAG+AGG | 0.317572 | 4_3:+9208456 | None:intergenic |
| TTCGTTTATCCTCTAAGAAA+TGG | 0.318720 | 4_3:-9208465 | Msa0628510:CDS |
| CGCTTCCACCGTTTCTTGCA+TGG | 0.350979 | 4_3:+9207931 | None:intergenic |
| AACACAACAACACAATTATC+AGG | 0.354650 | 4_3:+9207992 | None:intergenic |
| AAAGAGAAAGAAGGAGTTCT+AGG | 0.365664 | 4_3:+9208418 | None:intergenic |
| CGGGGAAGCCGCGGAGCGTT+CGG | 0.387389 | 4_3:-9207757 | Msa0628510:CDS |
| ACAAACACATTTGAAGAAAC+AGG | 0.393177 | 4_3:-9208088 | Msa0628510:CDS |
| TGAAAATGAGTTAACATTGA+AGG | 0.394547 | 4_3:+9208036 | None:intergenic |
| AAGTGTTGATTGGGATTTCA+TGG | 0.402630 | 4_3:-9207891 | Msa0628510:CDS |
| GCGTTCGGACGGTTAGGATT+GGG | 0.405374 | 4_3:-9207742 | Msa0628510:CDS |
| CGAACGCTCCGCGGCTTCCC+CGG | 0.413484 | 4_3:+9207758 | None:intergenic |
| TTTAGTGTTGTTGTTACAAT+CGG | 0.422967 | 4_3:+9208285 | None:intergenic |
| CGGTTTCTTTGTCATCTTCG+AGG | 0.434566 | 4_3:+9208305 | None:intergenic |
| GAAGAGTTCGGAGACTAAAC+CGG | 0.441402 | 4_3:-9207777 | Msa0628510:CDS |
| GGAACAATGAAAGTGTTGAT+TGG | 0.441448 | 4_3:-9207901 | Msa0628510:CDS |
| AGCGTTCGGACGGTTAGGAT+TGG | 0.441450 | 4_3:-9207743 | Msa0628510:CDS |
| GAATTAACTTTAGAGTTTGA+AGG | 0.445602 | 4_3:-9207692 | Msa0628510:CDS |
| CGCGGAGCGTTCGGACGGTT+AGG | 0.454970 | 4_3:-9207748 | Msa0628510:CDS |
| TGATAATTGTGTTGTTGTGT+TGG | 0.457949 | 4_3:-9207990 | Msa0628510:CDS |
| AGGATAAACGAAGTTGTGTT+GGG | 0.458162 | 4_3:+9208476 | None:intergenic |
| ACGAAGTTGTGTTGGGCGAT+TGG | 0.459516 | 4_3:+9208483 | None:intergenic |
| CGAAAATCATCATAAGGACT+TGG | 0.467264 | 4_3:+9207959 | None:intergenic |
| GAGACACCATTGGATCTTTG+TGG | 0.467751 | 4_3:-9208163 | Msa0628510:CDS |
| GAACAATGAAAGTGTTGATT+GGG | 0.470006 | 4_3:-9207900 | Msa0628510:CDS |
| CTCTATCATGAGGAAGAGTT+CGG | 0.473366 | 4_3:-9207789 | Msa0628510:CDS |
| GATCTTCGAAAATCATCATA+AGG | 0.481189 | 4_3:+9207953 | None:intergenic |
| AAATGTGTTTGTTGTTGTTG+TGG | 0.483665 | 4_3:+9208099 | None:intergenic |
| TGAAATTCTCAAAGAGAAAA+CGG | 0.493044 | 4_3:+9208338 | None:intergenic |
| GAGGATAAACGAAGTTGTGT+TGG | 0.494329 | 4_3:+9208475 | None:intergenic |
| AGAAGATGATGATGAAGAAG+AGG | 0.508127 | 4_3:-9208242 | Msa0628510:CDS |
| TTATCCTCTAAGAAATGGAT+TGG | 0.514704 | 4_3:-9208460 | Msa0628510:CDS |
| TCGAAGATCCATGCAAGAAA+CGG | 0.523834 | 4_3:-9207939 | Msa0628510:CDS |
| AAACGGTGGAAGCGAGGTTG+AGG | 0.524180 | 4_3:-9207922 | Msa0628510:CDS |
| TGTGTTTGTTGTTGTTGTGG+TGG | 0.541664 | 4_3:+9208102 | None:intergenic |
| AAGAGTTCGGAGACTAAACC+GGG | 0.547011 | 4_3:-9207776 | Msa0628510:CDS |
| TTCATCCAACGAGACACCAT+TGG | 0.547786 | 4_3:-9208173 | Msa0628510:CDS |
| TTAGGATTGGGACTGAGGTA+AGG | 0.548983 | 4_3:-9207730 | Msa0628510:CDS |
| TTGTTGTCAAAAGAGAAAGA+AGG | 0.565659 | 4_3:+9208409 | None:intergenic |
| GACGGTTAGGATTGGGACTG+AGG | 0.576913 | 4_3:-9207735 | Msa0628510:CDS |
| AGACTAAACCGGGGAAGCCG+CGG | 0.578732 | 4_3:-9207766 | Msa0628510:CDS |
| AAGATCCAATGGTGTCTCGT+TGG | 0.579089 | 4_3:+9208168 | None:intergenic |
| AAGAAATGGATTGGTCTCAA+AGG | 0.580257 | 4_3:-9208451 | Msa0628510:CDS |
| GAAGCCGCGGAGCGTTCGGA+CGG | 0.591522 | 4_3:-9207753 | Msa0628510:CDS |
| CTCGTTGGATGAATCAAACA+AGG | 0.592816 | 4_3:+9208183 | None:intergenic |
| TGCAAGAAACGGTGGAAGCG+AGG | 0.598163 | 4_3:-9207928 | Msa0628510:CDS |
| GTGACTTGATCTCTATCATG+AGG | 0.602549 | 4_3:-9207799 | Msa0628510:CDS |
| TTAGATCCACAAAGATCCAA+TGG | 0.615900 | 4_3:+9208157 | None:intergenic |
| ACGGTCAACATCTTCGAGTG+TGG | 0.632740 | 4_3:+9208357 | None:intergenic |
| TTGGATGAATCAAACAAGGT+GGG | 0.642701 | 4_3:+9208187 | None:intergenic |
| AAGATCCATGCAAGAAACGG+TGG | 0.645271 | 4_3:-9207936 | Msa0628510:CDS |
| GGATTGGGACTGAGGTAAGG+CGG | 0.658738 | 4_3:-9207727 | Msa0628510:CDS |
| GTTGGATGAATCAAACAAGG+TGG | 0.690695 | 4_3:+9208186 | None:intergenic |
| CTAACCGTCCGAACGCTCCG+CGG | 0.714481 | 4_3:+9207749 | None:intergenic |
| AGAGTTCGGAGACTAAACCG+GGG | 0.806429 | 4_3:-9207775 | Msa0628510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGAAAAATATTCAAAACA+AGG | - | chr4_3:9208006-9208025 | Msa0628510:CDS | 20.0% |
| !! | GAAGAAAAATATTCAAAACA+AGG | - | chr4_3:9208006-9208025 | Msa0628510:CDS | 20.0% |
| ! | TGAAATTCTCAAAGAGAAAA+CGG | + | chr4_3:9207882-9207901 | None:intergenic | 25.0% |
| !! | TTTAGTGTTGTTGTTACAAT+CGG | + | chr4_3:9207935-9207954 | None:intergenic | 25.0% |
| ! | TGAAAATGAGTTAACATTGA+AGG | + | chr4_3:9208184-9208203 | None:intergenic | 25.0% |
| !! | CAATGTTAACTCATTTTCAA+AGG | - | chr4_3:9208185-9208204 | Msa0628510:CDS | 25.0% |
| !!! | GAATTAACTTTAGAGTTTGA+AGG | - | chr4_3:9208525-9208544 | Msa0628510:CDS | 25.0% |
| ! | TGAAATTCTCAAAGAGAAAA+CGG | + | chr4_3:9207882-9207901 | None:intergenic | 25.0% |
| !! | TTTAGTGTTGTTGTTACAAT+CGG | + | chr4_3:9207935-9207954 | None:intergenic | 25.0% |
| ! | TGAAAATGAGTTAACATTGA+AGG | + | chr4_3:9208184-9208203 | None:intergenic | 25.0% |
| !! | CAATGTTAACTCATTTTCAA+AGG | - | chr4_3:9208185-9208204 | Msa0628510:CDS | 25.0% |
| !!! | GAATTAACTTTAGAGTTTGA+AGG | - | chr4_3:9208525-9208544 | Msa0628510:CDS | 25.0% |
| !! | AGGGATTTTTGAAAGTTCTT+TGG | + | chr4_3:9207688-9207707 | None:intergenic | 30.0% |
| ! | TTTGGAGAGGTAATTTTGAA+GGG | + | chr4_3:9207707-9207726 | None:intergenic | 30.0% |
| !! | TTTTGGAGAGGTAATTTTGA+AGG | + | chr4_3:9207708-9207727 | None:intergenic | 30.0% |
| ! | TTCGTTTATCCTCTAAGAAA+TGG | - | chr4_3:9207752-9207771 | Msa0628510:CDS | 30.0% |
| ! | TTATCCTCTAAGAAATGGAT+TGG | - | chr4_3:9207757-9207776 | Msa0628510:CDS | 30.0% |
| TTGTTGTCAAAAGAGAAAGA+AGG | + | chr4_3:9207811-9207830 | None:intergenic | 30.0% | |
| ! | AATAGATTCTTTTTGACACG+TGG | - | chr4_3:9208081-9208100 | Msa0628510:CDS | 30.0% |
| !! | AAATGTGTTTGTTGTTGTTG+TGG | + | chr4_3:9208121-9208140 | None:intergenic | 30.0% |
| ACAAACACATTTGAAGAAAC+AGG | - | chr4_3:9208129-9208148 | Msa0628510:CDS | 30.0% | |
| ! | GAGTTAACATTGAAGGTTTT+TGG | + | chr4_3:9208177-9208196 | None:intergenic | 30.0% |
| ! | TGTTAACTCATTTTCAAAGG+AGG | - | chr4_3:9208188-9208207 | Msa0628510:CDS | 30.0% |
| AACACAACAACACAATTATC+AGG | + | chr4_3:9208228-9208247 | None:intergenic | 30.0% | |
| ! | TGATAATTGTGTTGTTGTGT+TGG | - | chr4_3:9208227-9208246 | Msa0628510:CDS | 30.0% |
| GATCTTCGAAAATCATCATA+AGG | + | chr4_3:9208267-9208286 | None:intergenic | 30.0% | |
| !! | GAACAATGAAAGTGTTGATT+GGG | - | chr4_3:9208317-9208336 | Msa0628510:CDS | 30.0% |
| !! | AGGGATTTTTGAAAGTTCTT+TGG | + | chr4_3:9207688-9207707 | None:intergenic | 30.0% |
| ! | TTTGGAGAGGTAATTTTGAA+GGG | + | chr4_3:9207707-9207726 | None:intergenic | 30.0% |
| !! | TTTTGGAGAGGTAATTTTGA+AGG | + | chr4_3:9207708-9207727 | None:intergenic | 30.0% |
| ! | TTCGTTTATCCTCTAAGAAA+TGG | - | chr4_3:9207752-9207771 | Msa0628510:CDS | 30.0% |
| ! | TTATCCTCTAAGAAATGGAT+TGG | - | chr4_3:9207757-9207776 | Msa0628510:CDS | 30.0% |
| TTGTTGTCAAAAGAGAAAGA+AGG | + | chr4_3:9207811-9207830 | None:intergenic | 30.0% | |
| ! | AATAGATTCTTTTTGACACG+TGG | - | chr4_3:9208081-9208100 | Msa0628510:CDS | 30.0% |
| !! | AAATGTGTTTGTTGTTGTTG+TGG | + | chr4_3:9208121-9208140 | None:intergenic | 30.0% |
| ACAAACACATTTGAAGAAAC+AGG | - | chr4_3:9208129-9208148 | Msa0628510:CDS | 30.0% | |
| ! | GAGTTAACATTGAAGGTTTT+TGG | + | chr4_3:9208177-9208196 | None:intergenic | 30.0% |
| ! | TGTTAACTCATTTTCAAAGG+AGG | - | chr4_3:9208188-9208207 | Msa0628510:CDS | 30.0% |
| AACACAACAACACAATTATC+AGG | + | chr4_3:9208228-9208247 | None:intergenic | 30.0% | |
| ! | TGATAATTGTGTTGTTGTGT+TGG | - | chr4_3:9208227-9208246 | Msa0628510:CDS | 30.0% |
| GATCTTCGAAAATCATCATA+AGG | + | chr4_3:9208267-9208286 | None:intergenic | 30.0% | |
| !! | GAACAATGAAAGTGTTGATT+GGG | - | chr4_3:9208317-9208336 | Msa0628510:CDS | 30.0% |
| !!! | GATTGGTTTTGATTTTGGAG+AGG | + | chr4_3:9207720-9207739 | None:intergenic | 35.0% |
| AGGATAAACGAAGTTGTGTT+GGG | + | chr4_3:9207744-9207763 | None:intergenic | 35.0% | |
| !! | AAGAAATGGATTGGTCTCAA+AGG | - | chr4_3:9207766-9207785 | Msa0628510:CDS | 35.0% |
| AAAGAGAAAGAAGGAGTTCT+AGG | + | chr4_3:9207802-9207821 | None:intergenic | 35.0% | |
| CAAGAAAAACAACGACAACA+AGG | - | chr4_3:9207828-9207847 | Msa0628510:CDS | 35.0% | |
| ! | AGAAGATGATGATGAAGAAG+AGG | - | chr4_3:9207975-9207994 | Msa0628510:CDS | 35.0% |
| TTGGATGAATCAAACAAGGT+GGG | + | chr4_3:9208033-9208052 | None:intergenic | 35.0% | |
| TTAGATCCACAAAGATCCAA+TGG | + | chr4_3:9208063-9208082 | None:intergenic | 35.0% | |
| CGAAAATCATCATAAGGACT+TGG | + | chr4_3:9208261-9208280 | None:intergenic | 35.0% | |
| !! | GGAACAATGAAAGTGTTGAT+TGG | - | chr4_3:9208316-9208335 | Msa0628510:CDS | 35.0% |
| !! | AAGTGTTGATTGGGATTTCA+TGG | - | chr4_3:9208326-9208345 | Msa0628510:CDS | 35.0% |
| !!! | GATTGGTTTTGATTTTGGAG+AGG | + | chr4_3:9207720-9207739 | None:intergenic | 35.0% |
| AGGATAAACGAAGTTGTGTT+GGG | + | chr4_3:9207744-9207763 | None:intergenic | 35.0% | |
| !! | AAGAAATGGATTGGTCTCAA+AGG | - | chr4_3:9207766-9207785 | Msa0628510:CDS | 35.0% |
| AAAGAGAAAGAAGGAGTTCT+AGG | + | chr4_3:9207802-9207821 | None:intergenic | 35.0% | |
| CAAGAAAAACAACGACAACA+AGG | - | chr4_3:9207828-9207847 | Msa0628510:CDS | 35.0% | |
| ! | AGAAGATGATGATGAAGAAG+AGG | - | chr4_3:9207975-9207994 | Msa0628510:CDS | 35.0% |
| TTGGATGAATCAAACAAGGT+GGG | + | chr4_3:9208033-9208052 | None:intergenic | 35.0% | |
| TTAGATCCACAAAGATCCAA+TGG | + | chr4_3:9208063-9208082 | None:intergenic | 35.0% | |
| CGAAAATCATCATAAGGACT+TGG | + | chr4_3:9208261-9208280 | None:intergenic | 35.0% | |
| !! | GGAACAATGAAAGTGTTGAT+TGG | - | chr4_3:9208316-9208335 | Msa0628510:CDS | 35.0% |
| !! | AAGTGTTGATTGGGATTTCA+TGG | - | chr4_3:9208326-9208345 | Msa0628510:CDS | 35.0% |
| !!! | TGGGCGATTGGTTTTGATTT+TGG | + | chr4_3:9207725-9207744 | None:intergenic | 40.0% |
| GAGGATAAACGAAGTTGTGT+TGG | + | chr4_3:9207745-9207764 | None:intergenic | 40.0% | |
| GAGACCAATCCATTTCTTAG+AGG | + | chr4_3:9207764-9207783 | None:intergenic | 40.0% | |
| GTTGGATGAATCAAACAAGG+TGG | + | chr4_3:9208034-9208053 | None:intergenic | 40.0% | |
| CTCGTTGGATGAATCAAACA+AGG | + | chr4_3:9208037-9208056 | None:intergenic | 40.0% | |
| !! | TGTGTTTGTTGTTGTTGTGG+TGG | + | chr4_3:9208118-9208137 | None:intergenic | 40.0% |
| TCGAAGATCCATGCAAGAAA+CGG | - | chr4_3:9208278-9208297 | Msa0628510:CDS | 40.0% | |
| GTGACTTGATCTCTATCATG+AGG | - | chr4_3:9208418-9208437 | Msa0628510:CDS | 40.0% | |
| CTCTATCATGAGGAAGAGTT+CGG | - | chr4_3:9208428-9208447 | Msa0628510:CDS | 40.0% | |
| !!! | TGGGCGATTGGTTTTGATTT+TGG | + | chr4_3:9207725-9207744 | None:intergenic | 40.0% |
| GAGGATAAACGAAGTTGTGT+TGG | + | chr4_3:9207745-9207764 | None:intergenic | 40.0% | |
| GAGACCAATCCATTTCTTAG+AGG | + | chr4_3:9207764-9207783 | None:intergenic | 40.0% | |
| GTTGGATGAATCAAACAAGG+TGG | + | chr4_3:9208034-9208053 | None:intergenic | 40.0% | |
| CTCGTTGGATGAATCAAACA+AGG | + | chr4_3:9208037-9208056 | None:intergenic | 40.0% | |
| !! | TGTGTTTGTTGTTGTTGTGG+TGG | + | chr4_3:9208118-9208137 | None:intergenic | 40.0% |
| TCGAAGATCCATGCAAGAAA+CGG | - | chr4_3:9208278-9208297 | Msa0628510:CDS | 40.0% | |
| GTGACTTGATCTCTATCATG+AGG | - | chr4_3:9208418-9208437 | Msa0628510:CDS | 40.0% | |
| CTCTATCATGAGGAAGAGTT+CGG | - | chr4_3:9208428-9208447 | Msa0628510:CDS | 40.0% | |
| CGGTTTCTTTGTCATCTTCG+AGG | + | chr4_3:9207915-9207934 | None:intergenic | 45.0% | |
| TTCATCCAACGAGACACCAT+TGG | - | chr4_3:9208044-9208063 | Msa0628510:CDS | 45.0% | |
| AAGATCCAATGGTGTCTCGT+TGG | + | chr4_3:9208052-9208071 | None:intergenic | 45.0% | |
| GAGACACCATTGGATCTTTG+TGG | - | chr4_3:9208054-9208073 | Msa0628510:CDS | 45.0% | |
| ! | CTTTTTGACACGTGGCTTCT+CGG | - | chr4_3:9208089-9208108 | Msa0628510:CDS | 45.0% |
| ! | TTTTTGACACGTGGCTTCTC+GGG | - | chr4_3:9208090-9208109 | Msa0628510:CDS | 45.0% |
| AAGATCCATGCAAGAAACGG+TGG | - | chr4_3:9208281-9208300 | Msa0628510:CDS | 45.0% | |
| GAAGAGTTCGGAGACTAAAC+CGG | - | chr4_3:9208440-9208459 | Msa0628510:CDS | 45.0% | |
| AAGAGTTCGGAGACTAAACC+GGG | - | chr4_3:9208441-9208460 | Msa0628510:CDS | 45.0% | |
| TTAGGATTGGGACTGAGGTA+AGG | - | chr4_3:9208487-9208506 | Msa0628510:CDS | 45.0% | |
| CGGTTTCTTTGTCATCTTCG+AGG | + | chr4_3:9207915-9207934 | None:intergenic | 45.0% | |
| TTCATCCAACGAGACACCAT+TGG | - | chr4_3:9208044-9208063 | Msa0628510:CDS | 45.0% | |
| AAGATCCAATGGTGTCTCGT+TGG | + | chr4_3:9208052-9208071 | None:intergenic | 45.0% | |
| GAGACACCATTGGATCTTTG+TGG | - | chr4_3:9208054-9208073 | Msa0628510:CDS | 45.0% | |
| ! | CTTTTTGACACGTGGCTTCT+CGG | - | chr4_3:9208089-9208108 | Msa0628510:CDS | 45.0% |
| ! | TTTTTGACACGTGGCTTCTC+GGG | - | chr4_3:9208090-9208109 | Msa0628510:CDS | 45.0% |
| AAGATCCATGCAAGAAACGG+TGG | - | chr4_3:9208281-9208300 | Msa0628510:CDS | 45.0% | |
| GAAGAGTTCGGAGACTAAAC+CGG | - | chr4_3:9208440-9208459 | Msa0628510:CDS | 45.0% | |
| AAGAGTTCGGAGACTAAACC+GGG | - | chr4_3:9208441-9208460 | Msa0628510:CDS | 45.0% | |
| TTAGGATTGGGACTGAGGTA+AGG | - | chr4_3:9208487-9208506 | Msa0628510:CDS | 45.0% | |
| ACGAAGTTGTGTTGGGCGAT+TGG | + | chr4_3:9207737-9207756 | None:intergenic | 50.0% | |
| ACGGTCAACATCTTCGAGTG+TGG | + | chr4_3:9207863-9207882 | None:intergenic | 50.0% | |
| AGAGTTCGGAGACTAAACCG+GGG | - | chr4_3:9208442-9208461 | Msa0628510:CDS | 50.0% | |
| ACGAAGTTGTGTTGGGCGAT+TGG | + | chr4_3:9207737-9207756 | None:intergenic | 50.0% | |
| ACGGTCAACATCTTCGAGTG+TGG | + | chr4_3:9207863-9207882 | None:intergenic | 50.0% | |
| AGAGTTCGGAGACTAAACCG+GGG | - | chr4_3:9208442-9208461 | Msa0628510:CDS | 50.0% | |
| CGCTTCCACCGTTTCTTGCA+TGG | + | chr4_3:9208289-9208308 | None:intergenic | 55.0% | |
| TGCAAGAAACGGTGGAAGCG+AGG | - | chr4_3:9208289-9208308 | Msa0628510:CDS | 55.0% | |
| AAACGGTGGAAGCGAGGTTG+AGG | - | chr4_3:9208295-9208314 | Msa0628510:CDS | 55.0% | |
| AGCGTTCGGACGGTTAGGAT+TGG | - | chr4_3:9208474-9208493 | Msa0628510:CDS | 55.0% | |
| GCGTTCGGACGGTTAGGATT+GGG | - | chr4_3:9208475-9208494 | Msa0628510:CDS | 55.0% | |
| GACGGTTAGGATTGGGACTG+AGG | - | chr4_3:9208482-9208501 | Msa0628510:CDS | 55.0% | |
| GGATTGGGACTGAGGTAAGG+CGG | - | chr4_3:9208490-9208509 | Msa0628510:CDS | 55.0% | |
| CGCTTCCACCGTTTCTTGCA+TGG | + | chr4_3:9208289-9208308 | None:intergenic | 55.0% | |
| TGCAAGAAACGGTGGAAGCG+AGG | - | chr4_3:9208289-9208308 | Msa0628510:CDS | 55.0% | |
| AAACGGTGGAAGCGAGGTTG+AGG | - | chr4_3:9208295-9208314 | Msa0628510:CDS | 55.0% | |
| AGCGTTCGGACGGTTAGGAT+TGG | - | chr4_3:9208474-9208493 | Msa0628510:CDS | 55.0% | |
| GCGTTCGGACGGTTAGGATT+GGG | - | chr4_3:9208475-9208494 | Msa0628510:CDS | 55.0% | |
| GACGGTTAGGATTGGGACTG+AGG | - | chr4_3:9208482-9208501 | Msa0628510:CDS | 55.0% | |
| GGATTGGGACTGAGGTAAGG+CGG | - | chr4_3:9208490-9208509 | Msa0628510:CDS | 55.0% | |
| AGACTAAACCGGGGAAGCCG+CGG | - | chr4_3:9208451-9208470 | Msa0628510:CDS | 60.0% | |
| AGACTAAACCGGGGAAGCCG+CGG | - | chr4_3:9208451-9208470 | Msa0628510:CDS | 60.0% | |
| CTAACCGTCCGAACGCTCCG+CGG | + | chr4_3:9208471-9208490 | None:intergenic | 65.0% | |
| CTAACCGTCCGAACGCTCCG+CGG | + | chr4_3:9208471-9208490 | None:intergenic | 65.0% | |
| ! | GAAGCCGCGGAGCGTTCGGA+CGG | - | chr4_3:9208464-9208483 | Msa0628510:CDS | 70.0% |
| ! | CGCGGAGCGTTCGGACGGTT+AGG | - | chr4_3:9208469-9208488 | Msa0628510:CDS | 70.0% |
| ! | GAAGCCGCGGAGCGTTCGGA+CGG | - | chr4_3:9208464-9208483 | Msa0628510:CDS | 70.0% |
| ! | CGCGGAGCGTTCGGACGGTT+AGG | - | chr4_3:9208469-9208488 | Msa0628510:CDS | 70.0% |
| CGAACGCTCCGCGGCTTCCC+CGG | + | chr4_3:9208462-9208481 | None:intergenic | 75.0% | |
| ! | CGGGGAAGCCGCGGAGCGTT+CGG | - | chr4_3:9208460-9208479 | Msa0628510:CDS | 75.0% |
| CGAACGCTCCGCGGCTTCCC+CGG | + | chr4_3:9208462-9208481 | None:intergenic | 75.0% | |
| ! | CGGGGAAGCCGCGGAGCGTT+CGG | - | chr4_3:9208460-9208479 | Msa0628510:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 9207682 | 9208557 | 9207682 | ID=Msa0628510;Name=Msa0628510 |
| chr4_3 | mRNA | 9207682 | 9208557 | 9207682 | ID=Msa0628510-mRNA-1;Parent=Msa0628510;Name=Msa0628510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|291 |
| chr4_3 | exon | 9207682 | 9208557 | 9207682 | ID=Msa0628510-mRNA-1:exon:2776;Parent=Msa0628510-mRNA-1 |
| chr4_3 | CDS | 9207682 | 9208557 | 9207682 | ID=Msa0628510-mRNA-1:cds;Parent=Msa0628510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
