AlfalfaGEDB | Msa0628510

M. sativa cultivar zhongmu-4 / Msa0628510

KEGG: -
GO: GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF04844.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628510	XP_013454752.1	96.575	292	8	2	1	291	1	291	0.0	565

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628510	sp\|Q9S7T5\|OFP14_ARATH	36.538	312	144	11	1	280	1	290	3.47e-40	144

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628510	A0A072UI43	96.575	292	8	2	1	291	1	291	0.0	565

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TFs/TRs:

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Gene ID	Type	Classification
Msa0628510	TF	OFP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628510	MtrunA17_Chr4g0004341	96.575	292	8	2	1	291	1	291	0.0	565
Msa0628510	MtrunA17_Chr2g0331871	48.742	318	128	9	1	290	1	311	5.87e-84	254
Msa0628510	MtrunA17_Chr1g0185481	56.061	66	26	2	186	249	199	263	2.27e-15	74.3
Msa0628510	MtrunA17_Chr7g0259991	47.826	69	34	1	183	249	129	197	2.43e-13	67.8
Msa0628510	MtrunA17_Chr1g0205341	30.370	135	74	4	119	249	58	176	6.94e-12	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628510	AT1G79960.1	36.538	312	144	11	1	280	1	290	3.52e-41	144
Msa0628510	AT4G14860.1	52.542	59	27	1	192	249	109	167	2.51e-13	67.4
Msa0628510	AT1G05420.2	34.343	99	63	1	153	249	133	231	7.44e-12	64.3
Msa0628510	AT1G05420.1	34.343	99	63	1	153	249	117	215	7.54e-12	64.3

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Find 54 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGTGGAAGCGAGGTTG+AGG	0.524180	4_3:-9207922	Msa0628510:CDS
AAAGAGAAAGAAGGAGTTCT+AGG	0.365664	4_3:+9208418	None:intergenic
AAATGTGTTTGTTGTTGTTG+TGG	0.483665	4_3:+9208099	None:intergenic
AACACAACAACACAATTATC+AGG	0.354650	4_3:+9207992	None:intergenic
AAGAAATGGATTGGTCTCAA+AGG	0.580257	4_3:-9208451	Msa0628510:CDS
AAGAGTTCGGAGACTAAACC+GGG	0.547011	4_3:-9207776	Msa0628510:CDS
AAGATCCAATGGTGTCTCGT+TGG	0.579089	4_3:+9208168	None:intergenic
AAGATCCATGCAAGAAACGG+TGG	0.645271	4_3:-9207936	Msa0628510:CDS
AAGTGTTGATTGGGATTTCA+TGG	0.402630	4_3:-9207891	Msa0628510:CDS
ACAAACACATTTGAAGAAAC+AGG	0.393177	4_3:-9208088	Msa0628510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTTGTCAAAAGAGAAAGA+AGG	+	chr4_3:9207811-9207830	None:intergenic	30.0%
ACAAACACATTTGAAGAAAC+AGG	-	chr4_3:9208129-9208148	Msa0628510:CDS	30.0%
AACACAACAACACAATTATC+AGG	+	chr4_3:9208228-9208247	None:intergenic	30.0%
GATCTTCGAAAATCATCATA+AGG	+	chr4_3:9208267-9208286	None:intergenic	30.0%
TTGTTGTCAAAAGAGAAAGA+AGG	+	chr4_3:9207811-9207830	None:intergenic	30.0%
ACAAACACATTTGAAGAAAC+AGG	-	chr4_3:9208129-9208148	Msa0628510:CDS	30.0%
AACACAACAACACAATTATC+AGG	+	chr4_3:9208228-9208247	None:intergenic	30.0%
GATCTTCGAAAATCATCATA+AGG	+	chr4_3:9208267-9208286	None:intergenic	30.0%
AGGATAAACGAAGTTGTGTT+GGG	+	chr4_3:9207744-9207763	None:intergenic	35.0%
AAAGAGAAAGAAGGAGTTCT+AGG	+	chr4_3:9207802-9207821	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	9207682	9208557	9207682	ID=Msa0628510;Name=Msa0628510
chr4_3	mRNA	9207682	9208557	9207682	ID=Msa0628510-mRNA-1;Parent=Msa0628510;Name=Msa0628510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|291
chr4_3	exon	9207682	9208557	9207682	ID=Msa0628510-mRNA-1:exon:2776;Parent=Msa0628510-mRNA-1
chr4_3	CDS	9207682	9208557	9207682	ID=Msa0628510-mRNA-1:cds;Parent=Msa0628510-mRNA-1

Gene Sequence

>Msa0628510

ATGCCAAAGAACTTTCAAAAATCCCTTCAAAATTACCTCTCCAAAATCAAAACCAATCGCCCAACACAACTTCGTTTATCCTCTAAGAAATGGATTGGTCTCAAAGGTTGCAAACATCCTAGAACTCCTTCTTTCTCTTTTGACAACAAGAAAAACAACGACAACAAGGACGATGAAGCCACACTCGAAGATGTTGACCGTTTTCTCTTTGAGAATTTCAAGTCTTTATACCTCGAAGATGACAAAGAAACCGATTGTAACAACAACACTAAAAGTGTTGTCTCATCAGACGAAGAAGATGATGATGAAGAAGAGGAAACTCGTGAAGAAAAATATTCAAAACAAGGTCCCACCTTGTTTGATTCATCCAACGAGACACCATTGGATCTTTGTGGATCTAATAGATTCTTTTTGACACGTGGCTTCTCGGGCTCCACCACAACAACAACAAACACATTTGAAGAAACAGGATCATGCTCAAACTCGTCAACACCAAAAACCTTCAATGTTAACTCATTTTCAAAGGAGGATCAAATGAATATTCCTGATAATTGTGTTGTTGTGTTGGCAAGTTCGCCAAGTCCTTATGATGATTTTCGAAGATCCATGCAAGAAACGGTGGAAGCGAGGTTGAGGAACAATGAAAGTGTTGATTGGGATTTCATGGAAGAGCTTTTGTTTTGTTATATGAACTTAAATGAGAAGAAATCTTATAAGTTTATACTAAGTGCTTTTTGTGACTTGATCTCTATCATGAGGAAGAGTTCGGAGACTAAACCGGGGAAGCCGCGGAGCGTTCGGACGGTTAGGATTGGGACTGAGGTAAGGCGGAAGAAGATTAAAGAATTAACTTTAGAGTTTGAAGGTTCAAGATAA

Protein sequence

>Msa0628510

MPKNFQKSLQNYLSKIKTNRPTQLRLSSKKWIGLKGCKHPRTPSFSFDNKKNNDNKDDEATLEDVDRFLFENFKSLYLEDDKETDCNNNTKSVVSSDEEDDDEEEETREEKYSKQGPTLFDSSNETPLDLCGSNRFFLTRGFSGSTTTTTNTFEETGSCSNSSTPKTFNVNSFSKEDQMNIPDNCVVVLASSPSPYDDFRRSMQETVEARLRNNESVDWDFMEELLFCYMNLNEKKSYKFILSAFCDLISIMRKSSETKPGKPRSVRTVRIGTEVRRKKIKELTLEFEGSR*