Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628680 | XP_039683260.1 | 77.340 | 203 | 10 | 3 | 1 | 167 | 1 | 203 | 1.65e-101 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628680 | A0A072TPN7 | 80.625 | 160 | 10 | 2 | 1 | 139 | 1 | 160 | 2.33e-83 | 254 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0628680 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628680 | MtrunA17_Chr6g0451441 | 53.158 | 190 | 53 | 4 | 15 | 170 | 70 | 257 | 2.12e-56 | 185 |
| Msa0628680 | MtrunA17_Chr5g0441581 | 50.739 | 203 | 54 | 5 | 1 | 167 | 1 | 193 | 2.37e-55 | 187 |
| Msa0628680 | MtrunA17_Chr5g0441581 | 93.878 | 49 | 3 | 0 | 167 | 215 | 410 | 458 | 3.12e-23 | 97.1 |
| Msa0628680 | MtrunA17_Chr2g0296781 | 33.333 | 198 | 101 | 6 | 37 | 213 | 16 | 203 | 5.05e-21 | 90.9 |
| Msa0628680 | MtrunA17_Chr2g0296781 | 66.667 | 48 | 16 | 0 | 167 | 214 | 382 | 429 | 6.67e-14 | 70.1 |
| Msa0628680 | MtrunA17_Chr6g0477261 | 66.667 | 48 | 16 | 0 | 167 | 214 | 271 | 318 | 7.50e-14 | 69.7 |
| Msa0628680 | MtrunA17_Chr1g0196541 | 61.224 | 49 | 19 | 0 | 167 | 215 | 382 | 430 | 1.47e-12 | 66.2 |
| Msa0628680 | MtrunA17_Chr1g0196541 | 28.409 | 176 | 98 | 5 | 27 | 181 | 6 | 174 | 1.37e-11 | 63.2 |
| Msa0628680 | MtrunA17_Chr5g0448761 | 58.333 | 48 | 20 | 0 | 168 | 215 | 458 | 505 | 1.69e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628680 | AT4G38180.1 | 45.946 | 74 | 40 | 0 | 142 | 215 | 441 | 514 | 1.26e-11 | 63.9 |
Find 34 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACATCTCTTTCATTAAA+TGG | 0.147918 | 4_3:-9319436 | None:intergenic |
| TTGAACAACCTTGCCTTTGT+AGG | 0.343323 | 4_3:-9319292 | None:intergenic |
| GTTCAAGGCTAACAAGAATA+TGG | 0.357986 | 4_3:+9319309 | Msa0628680:CDS |
| CCACAATCCACAAAATCATT+TGG | 0.386069 | 4_3:-9318933 | None:intergenic |
| AACAAGGAACGGCGTGCAAT+TGG | 0.405287 | 4_3:+9319469 | Msa0628680:CDS |
| TAGAGAATATGCTTTGAGAA+AGG | 0.418901 | 4_3:+9319042 | Msa0628680:intron |
| AGAGAATATGCTTTGAGAAA+GGG | 0.433857 | 4_3:+9319043 | Msa0628680:intron |
| TGAACAACCTTGCCTTTGTA+GGG | 0.436560 | 4_3:-9319291 | None:intergenic |
| CAACCTTGCCTTTGTAGGGC+TGG | 0.439468 | 4_3:-9319287 | None:intergenic |
| ACATCGAGAAAAGGAAATGA+TGG | 0.450797 | 4_3:+9319085 | Msa0628680:CDS |
| TTTCGTAAATTGATTTAGAC+TGG | 0.452736 | 4_3:-9320217 | None:intergenic |
| CTGGTATGATGAGAATGATT+AGG | 0.463235 | 4_3:-9319268 | None:intergenic |
| TACAAAGGCAAGGTTGTTCA+AGG | 0.468300 | 4_3:+9319294 | Msa0628680:CDS |
| TTGAAGACACGTCCGACAAT+GGG | 0.482433 | 4_3:+9319175 | Msa0628680:intron |
| AACTTGATACAAATCTTAGC+AGG | 0.490559 | 4_3:-9319208 | None:intergenic |
| TCTTGCATGCACAAGAGATC+GGG | 0.494449 | 4_3:+9319126 | Msa0628680:CDS |
| TTCTTGCATGCACAAGAGAT+CGG | 0.495746 | 4_3:+9319125 | Msa0628680:CDS |
| AAGATTAGAACATCGAGAAA+AGG | 0.501177 | 4_3:+9319076 | Msa0628680:CDS |
| TGTATCAAGTTGAAAGCAGA+TGG | 0.504773 | 4_3:+9319220 | Msa0628680:CDS |
| ATTCAAATCAATGATGATGC+AGG | 0.511726 | 4_3:+9319352 | Msa0628680:CDS |
| CGGCGTGCAATTGGAAAAGA+AGG | 0.518535 | 4_3:+9319478 | Msa0628680:CDS |
| TGTGGTAGTATTCGTGATGA+AGG | 0.543788 | 4_3:+9318951 | Msa0628680:CDS |
| CATCGAGAAAAGGAAATGAT+GGG | 0.554779 | 4_3:+9319086 | Msa0628680:CDS |
| TGAAGATGAAGATGCATTGT+GGG | 0.555905 | 4_3:+9318998 | Msa0628680:CDS |
| ATTGAAGACACGTCCGACAA+TGG | 0.579883 | 4_3:+9319174 | Msa0628680:intron |
| ATATGGACTTGCATGTAAAG+AGG | 0.580323 | 4_3:+9319326 | Msa0628680:CDS |
| GGAATTATGTTAACAAGGAA+CGG | 0.587619 | 4_3:+9319458 | Msa0628680:CDS |
| TTGAAGATGAAGATGCATTG+TGG | 0.610005 | 4_3:+9318997 | Msa0628680:CDS |
| TCATCATACCAGCCCTACAA+AGG | 0.614008 | 4_3:+9319279 | Msa0628680:CDS |
| TGTGAGGAATTATGTTAACA+AGG | 0.648059 | 4_3:+9319453 | Msa0628680:CDS |
| ATCGAGAAAAGGAAATGATG+GGG | 0.649742 | 4_3:+9319087 | Msa0628680:CDS |
| ATACCAGCCCTACAAAGGCA+AGG | 0.665308 | 4_3:+9319284 | Msa0628680:CDS |
| GAGAAAAGGAAATGATGGGG+AGG | 0.686066 | 4_3:+9319090 | Msa0628680:CDS |
| CATTTAATGAAAGAGATGTG+AGG | 0.724148 | 4_3:+9319437 | Msa0628680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTATAAAATGATTTAACAT+AGG | - | chr4_3:9319026-9319045 | None:intergenic | 15.0% |
| !! | TTGAAAAAAATAGTTTATCA+AGG | - | chr4_3:9319515-9319534 | None:intergenic | 15.0% |
| !!! | TAAACTATTTTTTTCAAATG+AGG | + | chr4_3:9319518-9319537 | Msa0628680:intron | 15.0% |
| !!! | AAACTATTTTTTTCAAATGA+GGG | + | chr4_3:9319519-9319538 | Msa0628680:intron | 15.0% |
| !! | TCTATTTCATAAAAGAAATT+TGG | - | chr4_3:9319553-9319572 | None:intergenic | 15.0% |
| !!! | TTTCTTTTATGAAATAGATT+TGG | + | chr4_3:9319555-9319574 | Msa0628680:intron | 15.0% |
| !!! | CTTGTTAAGAAATTATTTTT+GGG | + | chr4_3:9320125-9320144 | Msa0628680:intron | 15.0% |
| !! | TCTATAAAATGATTTAACAT+AGG | - | chr4_3:9319026-9319045 | None:intergenic | 15.0% |
| !! | TTGAAAAAAATAGTTTATCA+AGG | - | chr4_3:9319515-9319534 | None:intergenic | 15.0% |
| !!! | TAAACTATTTTTTTCAAATG+AGG | + | chr4_3:9319518-9319537 | Msa0628680:intron | 15.0% |
| !!! | AAACTATTTTTTTCAAATGA+GGG | + | chr4_3:9319519-9319538 | Msa0628680:intron | 15.0% |
| !! | TCTATTTCATAAAAGAAATT+TGG | - | chr4_3:9319553-9319572 | None:intergenic | 15.0% |
| !!! | TTTCTTTTATGAAATAGATT+TGG | + | chr4_3:9319555-9319574 | Msa0628680:intron | 15.0% |
| !!! | CTTGTTAAGAAATTATTTTT+GGG | + | chr4_3:9320125-9320144 | Msa0628680:intron | 15.0% |
| !! | AAATAATTTCTTAACAAGGT+TGG | - | chr4_3:9320123-9320142 | None:intergenic | 20.0% |
| !! | CCAAAAATAATTTCTTAACA+AGG | - | chr4_3:9320127-9320146 | None:intergenic | 20.0% |
| !!! | CCTTGTTAAGAAATTATTTT+TGG | + | chr4_3:9320124-9320143 | Msa0628680:intron | 20.0% |
| !! | AAATAATTTCTTAACAAGGT+TGG | - | chr4_3:9320123-9320142 | None:intergenic | 20.0% |
| !! | CCAAAAATAATTTCTTAACA+AGG | - | chr4_3:9320127-9320146 | None:intergenic | 20.0% |
| !!! | CCTTGTTAAGAAATTATTTT+TGG | + | chr4_3:9320124-9320143 | Msa0628680:intron | 20.0% |
| !! | AAAAGGCATATCATATTTGT+TGG | - | chr4_3:9319683-9319702 | None:intergenic | 25.0% |
| !!! | TTGTATGGCTTTTTAATTCA+TGG | + | chr4_3:9319785-9319804 | Msa0628680:intron | 25.0% |
| !!! | TAGATGATTTTGAAGAGAAA+TGG | + | chr4_3:9320019-9320038 | Msa0628680:intron | 25.0% |
| !!! | TTAAGAAATTATTTTTGGGC+AGG | + | chr4_3:9320129-9320148 | Msa0628680:intron | 25.0% |
| !! | TTTCGTAAATTGATTTAGAC+TGG | - | chr4_3:9320220-9320239 | None:intergenic | 25.0% |
| !! | AAAAGGCATATCATATTTGT+TGG | - | chr4_3:9319683-9319702 | None:intergenic | 25.0% |
| !!! | TTGTATGGCTTTTTAATTCA+TGG | + | chr4_3:9319785-9319804 | Msa0628680:intron | 25.0% |
| !!! | TAGATGATTTTGAAGAGAAA+TGG | + | chr4_3:9320019-9320038 | Msa0628680:intron | 25.0% |
| !!! | TTAAGAAATTATTTTTGGGC+AGG | + | chr4_3:9320129-9320148 | Msa0628680:intron | 25.0% |
| !! | TTTCGTAAATTGATTTAGAC+TGG | - | chr4_3:9320220-9320239 | None:intergenic | 25.0% |
| !! | TAGAGAATATGCTTTGAGAA+AGG | + | chr4_3:9319042-9319061 | Msa0628680:intron | 30.0% |
| !! | AGAGAATATGCTTTGAGAAA+GGG | + | chr4_3:9319043-9319062 | Msa0628680:intron | 30.0% |
| AAGATTAGAACATCGAGAAA+AGG | + | chr4_3:9319076-9319095 | Msa0628680:CDS | 30.0% | |
| AACTTGATACAAATCTTAGC+AGG | - | chr4_3:9319211-9319230 | None:intergenic | 30.0% | |
| ! | ATTCAAATCAATGATGATGC+AGG | + | chr4_3:9319352-9319371 | Msa0628680:CDS | 30.0% |
| CTCACATCTCTTTCATTAAA+TGG | - | chr4_3:9319439-9319458 | None:intergenic | 30.0% | |
| CATTTAATGAAAGAGATGTG+AGG | + | chr4_3:9319437-9319456 | Msa0628680:CDS | 30.0% | |
| TGTGAGGAATTATGTTAACA+AGG | + | chr4_3:9319453-9319472 | Msa0628680:CDS | 30.0% | |
| GGAATTATGTTAACAAGGAA+CGG | + | chr4_3:9319458-9319477 | Msa0628680:CDS | 30.0% | |
| ! | TTCATGTAAGGAATGTCTTT+TGG | + | chr4_3:9319587-9319606 | Msa0628680:intron | 30.0% |
| ! | TCATGTAAGGAATGTCTTTT+GGG | + | chr4_3:9319588-9319607 | Msa0628680:intron | 30.0% |
| AATCAACATTACTTGGATGT+GGG | + | chr4_3:9319734-9319753 | Msa0628680:intron | 30.0% | |
| ! | CATTTTGCATTGCTTTACAT+TGG | - | chr4_3:9319855-9319874 | None:intergenic | 30.0% |
| AAAATTGTCGAAAAACTCAG+CGG | + | chr4_3:9319934-9319953 | Msa0628680:intron | 30.0% | |
| TTGAGCTTCAACAAAATCAT+TGG | + | chr4_3:9320061-9320080 | Msa0628680:intron | 30.0% | |
| ! | AACAAAATCATTGGTTGACT+GGG | + | chr4_3:9320070-9320089 | Msa0628680:intron | 30.0% |
| TGTATAATGAACGTCATAGA+TGG | + | chr4_3:9320094-9320113 | Msa0628680:intron | 30.0% | |
| GTATAATGAACGTCATAGAT+GGG | + | chr4_3:9320095-9320114 | Msa0628680:intron | 30.0% | |
| !!! | AGTATACACGCTTTTTTTGA+TGG | + | chr4_3:9320177-9320196 | Msa0628680:CDS | 30.0% |
| !! | TAGAGAATATGCTTTGAGAA+AGG | + | chr4_3:9319042-9319061 | Msa0628680:intron | 30.0% |
| !! | AGAGAATATGCTTTGAGAAA+GGG | + | chr4_3:9319043-9319062 | Msa0628680:intron | 30.0% |
| AAGATTAGAACATCGAGAAA+AGG | + | chr4_3:9319076-9319095 | Msa0628680:CDS | 30.0% | |
| AACTTGATACAAATCTTAGC+AGG | - | chr4_3:9319211-9319230 | None:intergenic | 30.0% | |
| ! | ATTCAAATCAATGATGATGC+AGG | + | chr4_3:9319352-9319371 | Msa0628680:CDS | 30.0% |
| CTCACATCTCTTTCATTAAA+TGG | - | chr4_3:9319439-9319458 | None:intergenic | 30.0% | |
| CATTTAATGAAAGAGATGTG+AGG | + | chr4_3:9319437-9319456 | Msa0628680:CDS | 30.0% | |
| TGTGAGGAATTATGTTAACA+AGG | + | chr4_3:9319453-9319472 | Msa0628680:CDS | 30.0% | |
| GGAATTATGTTAACAAGGAA+CGG | + | chr4_3:9319458-9319477 | Msa0628680:CDS | 30.0% | |
| ! | TTCATGTAAGGAATGTCTTT+TGG | + | chr4_3:9319587-9319606 | Msa0628680:intron | 30.0% |
| ! | TCATGTAAGGAATGTCTTTT+GGG | + | chr4_3:9319588-9319607 | Msa0628680:intron | 30.0% |
| AATCAACATTACTTGGATGT+GGG | + | chr4_3:9319734-9319753 | Msa0628680:intron | 30.0% | |
| ! | CATTTTGCATTGCTTTACAT+TGG | - | chr4_3:9319855-9319874 | None:intergenic | 30.0% |
| AAAATTGTCGAAAAACTCAG+CGG | + | chr4_3:9319934-9319953 | Msa0628680:intron | 30.0% | |
| TTGAGCTTCAACAAAATCAT+TGG | + | chr4_3:9320061-9320080 | Msa0628680:intron | 30.0% | |
| ! | AACAAAATCATTGGTTGACT+GGG | + | chr4_3:9320070-9320089 | Msa0628680:intron | 30.0% |
| TGTATAATGAACGTCATAGA+TGG | + | chr4_3:9320094-9320113 | Msa0628680:intron | 30.0% | |
| GTATAATGAACGTCATAGAT+GGG | + | chr4_3:9320095-9320114 | Msa0628680:intron | 30.0% | |
| !!! | AGTATACACGCTTTTTTTGA+TGG | + | chr4_3:9320177-9320196 | Msa0628680:CDS | 30.0% |
| ! | GGATGATCCAAATGATTTTG+TGG | + | chr4_3:9318926-9318945 | Msa0628680:CDS | 35.0% |
| CCACAATCCACAAAATCATT+TGG | - | chr4_3:9318936-9318955 | None:intergenic | 35.0% | |
| !! | CCAAATGATTTTGTGGATTG+TGG | + | chr4_3:9318933-9318952 | Msa0628680:CDS | 35.0% |
| TTGAAGATGAAGATGCATTG+TGG | + | chr4_3:9318997-9319016 | Msa0628680:CDS | 35.0% | |
| TGAAGATGAAGATGCATTGT+GGG | + | chr4_3:9318998-9319017 | Msa0628680:CDS | 35.0% | |
| !! | CTTTGAGAAAGGGTTTTGAT+TGG | + | chr4_3:9319053-9319072 | Msa0628680:CDS | 35.0% |
| ACATCGAGAAAAGGAAATGA+TGG | + | chr4_3:9319085-9319104 | Msa0628680:CDS | 35.0% | |
| CATCGAGAAAAGGAAATGAT+GGG | + | chr4_3:9319086-9319105 | Msa0628680:CDS | 35.0% | |
| ATCGAGAAAAGGAAATGATG+GGG | + | chr4_3:9319087-9319106 | Msa0628680:CDS | 35.0% | |
| !! | TGTATCAAGTTGAAAGCAGA+TGG | + | chr4_3:9319220-9319239 | Msa0628680:CDS | 35.0% |
| CTGGTATGATGAGAATGATT+AGG | - | chr4_3:9319271-9319290 | None:intergenic | 35.0% | |
| GTTCAAGGCTAACAAGAATA+TGG | + | chr4_3:9319309-9319328 | Msa0628680:CDS | 35.0% | |
| ATATGGACTTGCATGTAAAG+AGG | + | chr4_3:9319326-9319345 | Msa0628680:CDS | 35.0% | |
| ! | TGGATGACGATTTTCATGTA+AGG | + | chr4_3:9319575-9319594 | Msa0628680:intron | 35.0% |
| !!! | ATGCCTTTTGCTGTTTTTGT+TGG | + | chr4_3:9319694-9319713 | Msa0628680:intron | 35.0% |
| ACACCAACAAAAACAGCAAA+AGG | - | chr4_3:9319700-9319719 | None:intergenic | 35.0% | |
| ! | CAAGTAATGTTGATTGACCA+TGG | - | chr4_3:9319729-9319748 | None:intergenic | 35.0% |
| CATGGTCAATCAACATTACT+TGG | + | chr4_3:9319727-9319746 | Msa0628680:intron | 35.0% | |
| CAATCAACATTACTTGGATG+TGG | + | chr4_3:9319733-9319752 | Msa0628680:intron | 35.0% | |
| GCGGATATGGTGATTATAAA+AGG | + | chr4_3:9319953-9319972 | Msa0628680:intron | 35.0% | |
| ! | CAACAAAATCATTGGTTGAC+TGG | + | chr4_3:9320069-9320088 | Msa0628680:intron | 35.0% |
| ! | ATTCTTTTTCTGCTCGACTA+CGG | - | chr4_3:9320260-9320279 | None:intergenic | 35.0% |
| ! | GGATGATCCAAATGATTTTG+TGG | + | chr4_3:9318926-9318945 | Msa0628680:CDS | 35.0% |
| CCACAATCCACAAAATCATT+TGG | - | chr4_3:9318936-9318955 | None:intergenic | 35.0% | |
| !! | CCAAATGATTTTGTGGATTG+TGG | + | chr4_3:9318933-9318952 | Msa0628680:CDS | 35.0% |
| TTGAAGATGAAGATGCATTG+TGG | + | chr4_3:9318997-9319016 | Msa0628680:CDS | 35.0% | |
| TGAAGATGAAGATGCATTGT+GGG | + | chr4_3:9318998-9319017 | Msa0628680:CDS | 35.0% | |
| !! | CTTTGAGAAAGGGTTTTGAT+TGG | + | chr4_3:9319053-9319072 | Msa0628680:CDS | 35.0% |
| ACATCGAGAAAAGGAAATGA+TGG | + | chr4_3:9319085-9319104 | Msa0628680:CDS | 35.0% | |
| CATCGAGAAAAGGAAATGAT+GGG | + | chr4_3:9319086-9319105 | Msa0628680:CDS | 35.0% | |
| ATCGAGAAAAGGAAATGATG+GGG | + | chr4_3:9319087-9319106 | Msa0628680:CDS | 35.0% | |
| !! | TGTATCAAGTTGAAAGCAGA+TGG | + | chr4_3:9319220-9319239 | Msa0628680:CDS | 35.0% |
| CTGGTATGATGAGAATGATT+AGG | - | chr4_3:9319271-9319290 | None:intergenic | 35.0% | |
| GTTCAAGGCTAACAAGAATA+TGG | + | chr4_3:9319309-9319328 | Msa0628680:CDS | 35.0% | |
| ATATGGACTTGCATGTAAAG+AGG | + | chr4_3:9319326-9319345 | Msa0628680:CDS | 35.0% | |
| ! | TGGATGACGATTTTCATGTA+AGG | + | chr4_3:9319575-9319594 | Msa0628680:intron | 35.0% |
| !!! | ATGCCTTTTGCTGTTTTTGT+TGG | + | chr4_3:9319694-9319713 | Msa0628680:intron | 35.0% |
| ACACCAACAAAAACAGCAAA+AGG | - | chr4_3:9319700-9319719 | None:intergenic | 35.0% | |
| ! | CAAGTAATGTTGATTGACCA+TGG | - | chr4_3:9319729-9319748 | None:intergenic | 35.0% |
| CATGGTCAATCAACATTACT+TGG | + | chr4_3:9319727-9319746 | Msa0628680:intron | 35.0% | |
| CAATCAACATTACTTGGATG+TGG | + | chr4_3:9319733-9319752 | Msa0628680:intron | 35.0% | |
| GCGGATATGGTGATTATAAA+AGG | + | chr4_3:9319953-9319972 | Msa0628680:intron | 35.0% | |
| ! | CAACAAAATCATTGGTTGAC+TGG | + | chr4_3:9320069-9320088 | Msa0628680:intron | 35.0% |
| ! | ATTCTTTTTCTGCTCGACTA+CGG | - | chr4_3:9320260-9320279 | None:intergenic | 35.0% |
| TGTGGTAGTATTCGTGATGA+AGG | + | chr4_3:9318951-9318970 | Msa0628680:CDS | 40.0% | |
| TTCTTGCATGCACAAGAGAT+CGG | + | chr4_3:9319125-9319144 | Msa0628680:CDS | 40.0% | |
| !! | GGACAACTTTTTCCCATTGT+CGG | - | chr4_3:9319190-9319209 | None:intergenic | 40.0% |
| TGAACAACCTTGCCTTTGTA+GGG | - | chr4_3:9319294-9319313 | None:intergenic | 40.0% | |
| TTGAACAACCTTGCCTTTGT+AGG | - | chr4_3:9319295-9319314 | None:intergenic | 40.0% | |
| TACAAAGGCAAGGTTGTTCA+AGG | + | chr4_3:9319294-9319313 | Msa0628680:CDS | 40.0% | |
| CAATCTCTTGTTAGAGATGC+AGG | + | chr4_3:9319397-9319416 | Msa0628680:intron | 40.0% | |
| GCAATTGGAAAAGAAGGTGA+TGG | + | chr4_3:9319484-9319503 | Msa0628680:intron | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | + | chr4_3:9319625-9319644 | Msa0628680:intron | 40.0% |
| TTTGTTGGTGTGAATCACCA+TGG | + | chr4_3:9319709-9319728 | Msa0628680:intron | 40.0% | |
| AAGACACAGAGTCGTTTGTA+TGG | + | chr4_3:9319770-9319789 | Msa0628680:intron | 40.0% | |
| AGCAATGCAAAATGCAATCG+AGG | + | chr4_3:9319861-9319880 | Msa0628680:intron | 40.0% | |
| TGTGGTAGTATTCGTGATGA+AGG | + | chr4_3:9318951-9318970 | Msa0628680:CDS | 40.0% | |
| TTCTTGCATGCACAAGAGAT+CGG | + | chr4_3:9319125-9319144 | Msa0628680:CDS | 40.0% | |
| !! | GGACAACTTTTTCCCATTGT+CGG | - | chr4_3:9319190-9319209 | None:intergenic | 40.0% |
| TGAACAACCTTGCCTTTGTA+GGG | - | chr4_3:9319294-9319313 | None:intergenic | 40.0% | |
| TTGAACAACCTTGCCTTTGT+AGG | - | chr4_3:9319295-9319314 | None:intergenic | 40.0% | |
| TACAAAGGCAAGGTTGTTCA+AGG | + | chr4_3:9319294-9319313 | Msa0628680:CDS | 40.0% | |
| CAATCTCTTGTTAGAGATGC+AGG | + | chr4_3:9319397-9319416 | Msa0628680:intron | 40.0% | |
| GCAATTGGAAAAGAAGGTGA+TGG | + | chr4_3:9319484-9319503 | Msa0628680:intron | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | + | chr4_3:9319625-9319644 | Msa0628680:intron | 40.0% |
| TTTGTTGGTGTGAATCACCA+TGG | + | chr4_3:9319709-9319728 | Msa0628680:intron | 40.0% | |
| AAGACACAGAGTCGTTTGTA+TGG | + | chr4_3:9319770-9319789 | Msa0628680:intron | 40.0% | |
| AGCAATGCAAAATGCAATCG+AGG | + | chr4_3:9319861-9319880 | Msa0628680:intron | 40.0% | |
| ! | GAGAAAAGGAAATGATGGGG+AGG | + | chr4_3:9319090-9319109 | Msa0628680:CDS | 45.0% |
| TCTTGCATGCACAAGAGATC+GGG | + | chr4_3:9319126-9319145 | Msa0628680:CDS | 45.0% | |
| ATTGAAGACACGTCCGACAA+TGG | + | chr4_3:9319174-9319193 | Msa0628680:intron | 45.0% | |
| TTGAAGACACGTCCGACAAT+GGG | + | chr4_3:9319175-9319194 | Msa0628680:intron | 45.0% | |
| TCATCATACCAGCCCTACAA+AGG | + | chr4_3:9319279-9319298 | Msa0628680:CDS | 45.0% | |
| ! | TCAATGATGATGCAGGTGTG+AGG | + | chr4_3:9319359-9319378 | Msa0628680:intron | 45.0% |
| TCTCTTGTTAGAGATGCAGG+TGG | + | chr4_3:9319400-9319419 | Msa0628680:intron | 45.0% | |
| CTCTTGTTAGAGATGCAGGT+GGG | + | chr4_3:9319401-9319420 | Msa0628680:intron | 45.0% | |
| ! | TGGAAAAGAAGGTGATGGCA+AGG | + | chr4_3:9319489-9319508 | Msa0628680:intron | 45.0% |
| TTTGGGCTGATGCAAGAAGT+AGG | + | chr4_3:9319605-9319624 | Msa0628680:intron | 45.0% | |
| TTGGGCTGATGCAAGAAGTA+GGG | + | chr4_3:9319606-9319625 | Msa0628680:intron | 45.0% | |
| TTCATGGCTTCGTTGTATGC+TGG | + | chr4_3:9319801-9319820 | Msa0628680:intron | 45.0% | |
| TCATGGCTTCGTTGTATGCT+GGG | + | chr4_3:9319802-9319821 | Msa0628680:intron | 45.0% | |
| TCAGTCACAATACCAACAGG+GGG | - | chr4_3:9319832-9319851 | None:intergenic | 45.0% | |
| GTCAGTCACAATACCAACAG+GGG | - | chr4_3:9319833-9319852 | None:intergenic | 45.0% | |
| GGTCAGTCACAATACCAACA+GGG | - | chr4_3:9319834-9319853 | None:intergenic | 45.0% | |
| TGGTCAGTCACAATACCAAC+AGG | - | chr4_3:9319835-9319854 | None:intergenic | 45.0% | |
| ! | TTTTCCCTAAAACTCGCCAC+AGG | + | chr4_3:9319887-9319906 | Msa0628680:intron | 45.0% |
| TATGCCATAAACACCACCTG+TGG | - | chr4_3:9319906-9319925 | None:intergenic | 45.0% | |
| GTCGAAAAACTCAGCGGATA+TGG | + | chr4_3:9319940-9319959 | Msa0628680:intron | 45.0% | |
| ! | GAGAAAAGGAAATGATGGGG+AGG | + | chr4_3:9319090-9319109 | Msa0628680:CDS | 45.0% |
| TCTTGCATGCACAAGAGATC+GGG | + | chr4_3:9319126-9319145 | Msa0628680:CDS | 45.0% | |
| ATTGAAGACACGTCCGACAA+TGG | + | chr4_3:9319174-9319193 | Msa0628680:intron | 45.0% | |
| TTGAAGACACGTCCGACAAT+GGG | + | chr4_3:9319175-9319194 | Msa0628680:intron | 45.0% | |
| TCATCATACCAGCCCTACAA+AGG | + | chr4_3:9319279-9319298 | Msa0628680:CDS | 45.0% | |
| ! | TCAATGATGATGCAGGTGTG+AGG | + | chr4_3:9319359-9319378 | Msa0628680:intron | 45.0% |
| TCTCTTGTTAGAGATGCAGG+TGG | + | chr4_3:9319400-9319419 | Msa0628680:intron | 45.0% | |
| CTCTTGTTAGAGATGCAGGT+GGG | + | chr4_3:9319401-9319420 | Msa0628680:intron | 45.0% | |
| ! | TGGAAAAGAAGGTGATGGCA+AGG | + | chr4_3:9319489-9319508 | Msa0628680:intron | 45.0% |
| TTTGGGCTGATGCAAGAAGT+AGG | + | chr4_3:9319605-9319624 | Msa0628680:intron | 45.0% | |
| TTGGGCTGATGCAAGAAGTA+GGG | + | chr4_3:9319606-9319625 | Msa0628680:intron | 45.0% | |
| TTCATGGCTTCGTTGTATGC+TGG | + | chr4_3:9319801-9319820 | Msa0628680:intron | 45.0% | |
| TCATGGCTTCGTTGTATGCT+GGG | + | chr4_3:9319802-9319821 | Msa0628680:intron | 45.0% | |
| TCAGTCACAATACCAACAGG+GGG | - | chr4_3:9319832-9319851 | None:intergenic | 45.0% | |
| GTCAGTCACAATACCAACAG+GGG | - | chr4_3:9319833-9319852 | None:intergenic | 45.0% | |
| GGTCAGTCACAATACCAACA+GGG | - | chr4_3:9319834-9319853 | None:intergenic | 45.0% | |
| TGGTCAGTCACAATACCAAC+AGG | - | chr4_3:9319835-9319854 | None:intergenic | 45.0% | |
| ! | TTTTCCCTAAAACTCGCCAC+AGG | + | chr4_3:9319887-9319906 | Msa0628680:intron | 45.0% |
| TATGCCATAAACACCACCTG+TGG | - | chr4_3:9319906-9319925 | None:intergenic | 45.0% | |
| GTCGAAAAACTCAGCGGATA+TGG | + | chr4_3:9319940-9319959 | Msa0628680:intron | 45.0% | |
| ATACCAGCCCTACAAAGGCA+AGG | + | chr4_3:9319284-9319303 | Msa0628680:CDS | 50.0% | |
| AACAAGGAACGGCGTGCAAT+TGG | + | chr4_3:9319469-9319488 | Msa0628680:CDS | 50.0% | |
| CGGCGTGCAATTGGAAAAGA+AGG | + | chr4_3:9319478-9319497 | Msa0628680:CDS | 50.0% | |
| ! | CTTGGATGTGGGTTGCTATC+AGG | + | chr4_3:9319745-9319764 | Msa0628680:intron | 50.0% |
| ! | ACCACCTGTGGCGAGTTTTA+GGG | - | chr4_3:9319894-9319913 | None:intergenic | 50.0% |
| ATACCAGCCCTACAAAGGCA+AGG | + | chr4_3:9319284-9319303 | Msa0628680:CDS | 50.0% | |
| AACAAGGAACGGCGTGCAAT+TGG | + | chr4_3:9319469-9319488 | Msa0628680:CDS | 50.0% | |
| CGGCGTGCAATTGGAAAAGA+AGG | + | chr4_3:9319478-9319497 | Msa0628680:CDS | 50.0% | |
| ! | CTTGGATGTGGGTTGCTATC+AGG | + | chr4_3:9319745-9319764 | Msa0628680:intron | 50.0% |
| ! | ACCACCTGTGGCGAGTTTTA+GGG | - | chr4_3:9319894-9319913 | None:intergenic | 50.0% |
| CAACCTTGCCTTTGTAGGGC+TGG | - | chr4_3:9319290-9319309 | None:intergenic | 55.0% | |
| TCCCTAAAACTCGCCACAGG+TGG | + | chr4_3:9319890-9319909 | Msa0628680:intron | 55.0% | |
| ! | CACCACCTGTGGCGAGTTTT+AGG | - | chr4_3:9319895-9319914 | None:intergenic | 55.0% |
| CTCGCCACAGGTGGTGTTTA+TGG | + | chr4_3:9319899-9319918 | Msa0628680:intron | 55.0% | |
| CAACCTTGCCTTTGTAGGGC+TGG | - | chr4_3:9319290-9319309 | None:intergenic | 55.0% | |
| TCCCTAAAACTCGCCACAGG+TGG | + | chr4_3:9319890-9319909 | Msa0628680:intron | 55.0% | |
| ! | CACCACCTGTGGCGAGTTTT+AGG | - | chr4_3:9319895-9319914 | None:intergenic | 55.0% |
| CTCGCCACAGGTGGTGTTTA+TGG | + | chr4_3:9319899-9319918 | Msa0628680:intron | 55.0% | |
| ATGCTGGGAAAGCCCCCTGT+TGG | + | chr4_3:9319817-9319836 | Msa0628680:intron | 60.0% | |
| ATGCTGGGAAAGCCCCCTGT+TGG | + | chr4_3:9319817-9319836 | Msa0628680:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 9318924 | 9320299 | 9318924 | ID=Msa0628680;Name=Msa0628680 |
| chr4_3 | mRNA | 9318924 | 9320299 | 9318924 | ID=Msa0628680-mRNA-1;Parent=Msa0628680;Name=Msa0628680-mRNA-1;_AED=0.34;_eAED=0.36;_QI=0|0|0|0.8|0|0|5|0|215 |
| chr4_3 | exon | 9318924 | 9319027 | 9318924 | ID=Msa0628680-mRNA-1:exon:2828;Parent=Msa0628680-mRNA-1 |
| chr4_3 | exon | 9319045 | 9319165 | 9319045 | ID=Msa0628680-mRNA-1:exon:2829;Parent=Msa0628680-mRNA-1 |
| chr4_3 | exon | 9319181 | 9319373 | 9319181 | ID=Msa0628680-mRNA-1:exon:2830;Parent=Msa0628680-mRNA-1 |
| chr4_3 | exon | 9319419 | 9319499 | 9319419 | ID=Msa0628680-mRNA-1:exon:2831;Parent=Msa0628680-mRNA-1 |
| chr4_3 | exon | 9320151 | 9320299 | 9320151 | ID=Msa0628680-mRNA-1:exon:2832;Parent=Msa0628680-mRNA-1 |
| chr4_3 | CDS | 9318924 | 9319027 | 9318924 | ID=Msa0628680-mRNA-1:cds;Parent=Msa0628680-mRNA-1 |
| chr4_3 | CDS | 9319045 | 9319165 | 9319045 | ID=Msa0628680-mRNA-1:cds;Parent=Msa0628680-mRNA-1 |
| chr4_3 | CDS | 9319181 | 9319373 | 9319181 | ID=Msa0628680-mRNA-1:cds;Parent=Msa0628680-mRNA-1 |
| chr4_3 | CDS | 9319419 | 9319499 | 9319419 | ID=Msa0628680-mRNA-1:cds;Parent=Msa0628680-mRNA-1 |
| chr4_3 | CDS | 9320151 | 9320299 | 9320151 | ID=Msa0628680-mRNA-1:cds;Parent=Msa0628680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
