Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629610 | XP_004506787.1 | 61.084 | 203 | 37 | 4 | 11 | 171 | 14 | 216 | 3.28e-73 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629610 | sp|Q8S9H7|DIV_ANTMA | 46.907 | 194 | 62 | 2 | 19 | 171 | 15 | 208 | 1.62e-54 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0629610 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629610 | MtrunA17_Chr7g0241761 | 54.902 | 204 | 49 | 6 | 8 | 171 | 16 | 216 | 8.87e-66 | 203 |
| Msa0629610 | MtrunA17_Chr5g0429521 | 48.768 | 203 | 63 | 5 | 2 | 166 | 4 | 203 | 7.57e-57 | 180 |
| Msa0629610 | MtrunA17_Chr3g0104071 | 45.909 | 220 | 69 | 5 | 2 | 171 | 4 | 223 | 3.42e-55 | 176 |
| Msa0629610 | MtrunA17_Chr5g0436501 | 51.309 | 191 | 57 | 6 | 16 | 171 | 14 | 203 | 2.46e-53 | 170 |
| Msa0629610 | MtrunA17_Chr1g0210471 | 40.936 | 171 | 66 | 3 | 28 | 163 | 22 | 192 | 2.55e-33 | 118 |
| Msa0629610 | MtrunA17_Chr1g0162081 | 75.806 | 62 | 15 | 0 | 102 | 163 | 129 | 190 | 5.19e-25 | 97.8 |
| Msa0629610 | MtrunA17_Chr8g0365011 | 36.686 | 169 | 72 | 5 | 28 | 162 | 6 | 173 | 5.33e-24 | 95.1 |
| Msa0629610 | MtrunA17_Chr4g0062741 | 70.968 | 62 | 18 | 0 | 102 | 163 | 145 | 206 | 2.62e-23 | 93.6 |
| Msa0629610 | MtrunA17_Chr6g0488471 | 67.241 | 58 | 19 | 0 | 102 | 159 | 104 | 161 | 1.21e-19 | 83.6 |
| Msa0629610 | MtrunA17_Chr2g0331031 | 62.712 | 59 | 22 | 0 | 102 | 160 | 116 | 174 | 1.70e-19 | 84.0 |
| Msa0629610 | MtrunA17_Chr4g0055931 | 57.576 | 66 | 28 | 0 | 102 | 167 | 102 | 167 | 4.60e-19 | 82.4 |
| Msa0629610 | MtrunA17_Chr8g0389241 | 65.517 | 58 | 19 | 1 | 102 | 159 | 112 | 168 | 7.13e-18 | 78.6 |
| Msa0629610 | MtrunA17_Chr5g0440741 | 57.143 | 63 | 24 | 1 | 102 | 161 | 107 | 169 | 1.35e-16 | 75.1 |
| Msa0629610 | MtrunA17_Chr3g0092621 | 59.322 | 59 | 24 | 0 | 102 | 160 | 91 | 149 | 1.46e-16 | 73.2 |
| Msa0629610 | MtrunA17_Chr5g0440731 | 57.143 | 63 | 24 | 1 | 102 | 161 | 112 | 174 | 1.67e-16 | 75.1 |
| Msa0629610 | MtrunA17_Chr5g0415191 | 60.000 | 65 | 26 | 0 | 102 | 166 | 109 | 173 | 8.48e-16 | 73.2 |
| Msa0629610 | MtrunA17_Chr8g0364731 | 63.333 | 60 | 20 | 1 | 105 | 162 | 11 | 70 | 1.03e-15 | 70.9 |
| Msa0629610 | MtrunA17_Chr5g0409841 | 54.839 | 62 | 26 | 1 | 102 | 161 | 99 | 160 | 2.23e-15 | 71.2 |
| Msa0629610 | MtrunA17_Chr3g0135671 | 72.093 | 43 | 12 | 0 | 102 | 144 | 98 | 140 | 5.49e-15 | 70.1 |
| Msa0629610 | MtrunA17_Chr4g0059701 | 72.500 | 40 | 11 | 0 | 102 | 141 | 91 | 130 | 3.51e-14 | 68.6 |
| Msa0629610 | MtrunA17_Chr5g0409831 | 52.308 | 65 | 28 | 1 | 102 | 163 | 84 | 148 | 4.11e-14 | 67.4 |
| Msa0629610 | MtrunA17_Chr6g0452791 | 52.632 | 57 | 27 | 0 | 86 | 142 | 71 | 127 | 4.44e-14 | 66.6 |
| Msa0629610 | MtrunA17_Chr1g0155181 | 55.556 | 45 | 20 | 0 | 28 | 72 | 5 | 49 | 1.17e-13 | 63.2 |
| Msa0629610 | MtrunA17_Chr3g0141601 | 51.923 | 52 | 25 | 0 | 28 | 79 | 5 | 56 | 5.26e-13 | 61.6 |
| Msa0629610 | MtrunA17_Chr8g0373131 | 45.455 | 66 | 31 | 2 | 28 | 89 | 3 | 67 | 2.67e-12 | 59.3 |
| Msa0629610 | MtrunA17_Chr8g0373111 | 45.455 | 66 | 31 | 2 | 28 | 89 | 3 | 67 | 2.87e-12 | 59.3 |
| Msa0629610 | MtrunA17_Chr8g0373121 | 45.455 | 66 | 31 | 2 | 28 | 89 | 3 | 67 | 2.87e-12 | 59.3 |
| Msa0629610 | MtrunA17_Chr6g0449111 | 42.029 | 69 | 36 | 1 | 24 | 88 | 4 | 72 | 3.67e-12 | 58.9 |
| Msa0629610 | MtrunA17_Chr3g0144631 | 54.545 | 44 | 20 | 0 | 30 | 73 | 16 | 59 | 5.03e-12 | 58.9 |
| Msa0629610 | MtrunA17_Chr3g0113121 | 48.571 | 70 | 29 | 1 | 102 | 164 | 102 | 171 | 5.15e-12 | 61.6 |
| Msa0629610 | MtrunA17_Chr3g0081631 | 47.692 | 65 | 29 | 2 | 30 | 89 | 10 | 74 | 5.25e-12 | 58.9 |
| Msa0629610 | MtrunA17_Chr5g0404101 | 37.333 | 75 | 43 | 1 | 29 | 99 | 18 | 92 | 5.57e-12 | 58.9 |
| Msa0629610 | MtrunA17_Chr5g0404301 | 47.170 | 53 | 27 | 1 | 27 | 79 | 1 | 52 | 9.49e-12 | 57.4 |
| Msa0629610 | MtrunA17_Chr7g0255841 | 50.000 | 62 | 27 | 1 | 32 | 89 | 14 | 75 | 9.62e-12 | 58.2 |
| Msa0629610 | MtrunA17_Chr8g0373101 | 43.548 | 62 | 30 | 2 | 28 | 85 | 3 | 63 | 3.40e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629610 | AT2G38090.1 | 48.792 | 207 | 56 | 4 | 8 | 167 | 10 | 213 | 3.69e-59 | 186 |
| Msa0629610 | AT5G58900.1 | 46.411 | 209 | 63 | 4 | 10 | 169 | 7 | 215 | 1.05e-55 | 177 |
| Msa0629610 | AT3G11280.2 | 50.000 | 164 | 53 | 3 | 30 | 164 | 33 | 196 | 1.78e-46 | 153 |
| Msa0629610 | AT3G11280.1 | 50.000 | 164 | 53 | 3 | 30 | 164 | 33 | 196 | 1.78e-46 | 153 |
| Msa0629610 | AT5G05790.2 | 47.674 | 172 | 55 | 3 | 28 | 164 | 29 | 200 | 6.60e-46 | 152 |
| Msa0629610 | AT5G05790.1 | 47.674 | 172 | 55 | 3 | 28 | 164 | 29 | 200 | 6.60e-46 | 152 |
| Msa0629610 | AT5G01200.1 | 42.500 | 200 | 63 | 5 | 16 | 164 | 17 | 215 | 4.94e-44 | 147 |
| Msa0629610 | AT5G04760.1 | 39.394 | 165 | 70 | 3 | 28 | 163 | 4 | 167 | 3.02e-29 | 107 |
| Msa0629610 | AT5G08520.1 | 36.667 | 180 | 63 | 3 | 30 | 163 | 12 | 186 | 2.46e-27 | 104 |
| Msa0629610 | AT1G49010.1 | 70.968 | 62 | 18 | 0 | 102 | 163 | 141 | 202 | 1.29e-23 | 94.7 |
| Msa0629610 | AT5G47390.1 | 67.241 | 58 | 19 | 0 | 102 | 159 | 103 | 160 | 5.54e-20 | 85.5 |
| Msa0629610 | AT5G61620.1 | 55.714 | 70 | 31 | 0 | 102 | 171 | 115 | 184 | 2.58e-18 | 80.5 |
| Msa0629610 | AT5G23650.1 | 65.574 | 61 | 21 | 0 | 102 | 162 | 127 | 187 | 1.05e-17 | 79.0 |
| Msa0629610 | AT3G10580.2 | 63.333 | 60 | 20 | 1 | 102 | 161 | 102 | 159 | 1.39e-17 | 77.8 |
| Msa0629610 | AT3G10580.1 | 63.333 | 60 | 20 | 1 | 102 | 161 | 102 | 159 | 2.19e-17 | 77.8 |
| Msa0629610 | AT5G56840.1 | 72.093 | 43 | 12 | 0 | 102 | 144 | 98 | 140 | 3.74e-16 | 73.6 |
| Msa0629610 | AT4G09450.1 | 58.333 | 60 | 25 | 0 | 102 | 161 | 98 | 157 | 6.43e-16 | 72.4 |
| Msa0629610 | AT1G70000.1 | 67.797 | 59 | 19 | 0 | 102 | 160 | 105 | 163 | 1.18e-15 | 72.8 |
| Msa0629610 | AT1G70000.2 | 67.797 | 59 | 19 | 0 | 102 | 160 | 105 | 163 | 1.18e-15 | 72.8 |
| Msa0629610 | AT3G16350.1 | 75.610 | 41 | 10 | 0 | 102 | 142 | 144 | 184 | 2.27e-15 | 72.8 |
| Msa0629610 | AT1G19000.2 | 70.000 | 40 | 12 | 0 | 102 | 141 | 109 | 148 | 1.95e-14 | 69.7 |
| Msa0629610 | AT1G19000.1 | 70.000 | 40 | 12 | 0 | 102 | 141 | 109 | 148 | 1.95e-14 | 69.7 |
| Msa0629610 | AT1G75250.2 | 56.522 | 46 | 20 | 0 | 27 | 72 | 9 | 54 | 1.47e-13 | 63.5 |
| Msa0629610 | AT1G75250.1 | 56.522 | 46 | 20 | 0 | 27 | 72 | 9 | 54 | 3.12e-13 | 63.5 |
| Msa0629610 | AT1G74840.2 | 67.500 | 40 | 13 | 0 | 102 | 141 | 103 | 142 | 1.30e-12 | 63.9 |
| Msa0629610 | AT1G74840.1 | 67.500 | 40 | 13 | 0 | 102 | 141 | 103 | 142 | 1.55e-12 | 64.3 |
| Msa0629610 | AT4G36570.1 | 58.140 | 43 | 18 | 0 | 30 | 72 | 12 | 54 | 3.35e-12 | 58.9 |
| Msa0629610 | AT4G39250.1 | 53.488 | 43 | 20 | 0 | 30 | 72 | 14 | 56 | 1.82e-11 | 58.2 |
| Msa0629610 | AT2G21650.1 | 45.312 | 64 | 31 | 1 | 30 | 89 | 14 | 77 | 2.35e-11 | 57.8 |
| Msa0629610 | AT3G10590.1 | 28.324 | 173 | 82 | 6 | 29 | 161 | 6 | 176 | 3.26e-11 | 59.7 |
Find 27 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCATTAGGCAACTTAA+TGG | 0.276277 | 4_3:+10494265 | Msa0629610:CDS |
| CGCTTTGGCTTTATATGATA+AGG | 0.327997 | 4_3:+10493000 | Msa0629610:CDS |
| AATTGATCCATCACATTCAT+AGG | 0.354115 | 4_3:+10494134 | Msa0629610:CDS |
| ATGCTCAAAAGTATTTCATT+AGG | 0.378742 | 4_3:+10494254 | Msa0629610:CDS |
| AGAAGTATAGTAAAGGAGAT+TGG | 0.394305 | 4_3:+10494176 | Msa0629610:CDS |
| CAAGTTGTTTGAGAACGCTT+TGG | 0.423370 | 4_3:+10492985 | Msa0629610:CDS |
| TTAGTGTCTTTAAATTTCAA+TGG | 0.434527 | 4_3:+10494101 | Msa0629610:CDS |
| ACTCTCTTGGAGCCACCAAT+TGG | 0.444829 | 4_3:-10492930 | None:intergenic |
| GCTACCATCATCCAACGGTC+GGG | 0.445026 | 4_3:-10493028 | None:intergenic |
| ACATCACTAATAGTCTTACT+TGG | 0.467585 | 4_3:-10493061 | None:intergenic |
| CTACCATCATCCAACGGTCG+GGG | 0.477795 | 4_3:-10493027 | None:intergenic |
| TGCTACCATCATCCAACGGT+CGG | 0.501556 | 4_3:-10493029 | None:intergenic |
| CATTCATAGGAAATTTCTGA+TGG | 0.510294 | 4_3:+10494147 | Msa0629610:CDS |
| CTTAATGGAGGGAAAGATAG+AGG | 0.518361 | 4_3:+10494280 | Msa0629610:CDS |
| GGTCTTAAGAAGTATAGTAA+AGG | 0.521901 | 4_3:+10494169 | Msa0629610:CDS |
| AGAGTAAAAGAATTACCAAA+TGG | 0.523493 | 4_3:+10492948 | Msa0629610:CDS |
| TCATTAGGCAACTTAATGGA+GGG | 0.542113 | 4_3:+10494269 | Msa0629610:CDS |
| GAAATTTCCTATGAATGTGA+TGG | 0.554971 | 4_3:-10494141 | None:intergenic |
| TTCATTAGGCAACTTAATGG+AGG | 0.557447 | 4_3:+10494268 | Msa0629610:CDS |
| GATTCACCATTGTGATGTCA+TGG | 0.574290 | 4_3:-10494315 | None:intergenic |
| GCATGACTTGCAACTTGTGT+AGG | 0.611090 | 4_3:-10494235 | None:intergenic |
| ATTCATAGGAAATTTCTGAT+GGG | 0.614650 | 4_3:+10494148 | Msa0629610:CDS |
| CCAAAGACCAAAGGGAACTG+TGG | 0.629759 | 4_3:+10494075 | Msa0629610:intron |
| TTAACATGATGATAAGAACA+TGG | 0.648076 | 4_3:-10492902 | None:intergenic |
| TACCATCATCCAACGGTCGG+GGG | 0.662362 | 4_3:-10493026 | None:intergenic |
| TAGTATCCATGACATCACAA+TGG | 0.712288 | 4_3:+10494309 | Msa0629610:CDS |
| TTTCTGCTACCATCATCCAA+CGG | 0.713612 | 4_3:-10493033 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTATATGTGTTAAT+CGG | + | chr4_3:10493663-10493682 | Msa0629610:intron | 10.0% |
| !! | AATTATTAATTACATTACAA+AGG | + | chr4_3:10493952-10493971 | Msa0629610:intron | 10.0% |
| !!! | TTAATTTTATATGTGTTAAT+CGG | + | chr4_3:10493663-10493682 | Msa0629610:intron | 10.0% |
| !! | AATTATTAATTACATTACAA+AGG | + | chr4_3:10493952-10493971 | Msa0629610:intron | 10.0% |
| !! | AATAATAGGAGTAAATTAAA+GGG | - | chr4_3:10493308-10493327 | None:intergenic | 15.0% |
| !! | AAATAATAGGAGTAAATTAA+AGG | - | chr4_3:10493309-10493328 | None:intergenic | 15.0% |
| !!! | TTAATTTACTCCTATTATTT+TGG | + | chr4_3:10493309-10493328 | Msa0629610:intron | 15.0% |
| !!! | TAATTTACTCCTATTATTTT+GGG | + | chr4_3:10493310-10493329 | Msa0629610:intron | 15.0% |
| !! | ATGATTTATGTAATTTATGA+TGG | - | chr4_3:10493612-10493631 | None:intergenic | 15.0% |
| !! | ATTCATAATATAAAATTGCT+TGG | + | chr4_3:10493833-10493852 | Msa0629610:intron | 15.0% |
| !! | TTGAAAAATTACATTGTAAT+AGG | - | chr4_3:10493905-10493924 | None:intergenic | 15.0% |
| !! | AATAATAGGAGTAAATTAAA+GGG | - | chr4_3:10493308-10493327 | None:intergenic | 15.0% |
| !! | AAATAATAGGAGTAAATTAA+AGG | - | chr4_3:10493309-10493328 | None:intergenic | 15.0% |
| !!! | TTAATTTACTCCTATTATTT+TGG | + | chr4_3:10493309-10493328 | Msa0629610:intron | 15.0% |
| !!! | TAATTTACTCCTATTATTTT+GGG | + | chr4_3:10493310-10493329 | Msa0629610:intron | 15.0% |
| !! | ATGATTTATGTAATTTATGA+TGG | - | chr4_3:10493612-10493631 | None:intergenic | 15.0% |
| !! | ATTCATAATATAAAATTGCT+TGG | + | chr4_3:10493833-10493852 | Msa0629610:intron | 15.0% |
| !! | TTGAAAAATTACATTGTAAT+AGG | - | chr4_3:10493905-10493924 | None:intergenic | 15.0% |
| !! | ATCATGTTAAAAATTCCAAT+TGG | + | chr4_3:10492915-10492934 | Msa0629610:CDS | 20.0% |
| !! | TGACTCAATCAATTTATTTA+AGG | + | chr4_3:10493467-10493486 | Msa0629610:intron | 20.0% |
| !! | TTATATTCATAGTCAAATTG+AGG | + | chr4_3:10493726-10493745 | Msa0629610:intron | 20.0% |
| !! | TATGCAATTGGTATAAAATA+AGG | + | chr4_3:10494013-10494032 | Msa0629610:intron | 20.0% |
| !! | TTAGTGTCTTTAAATTTCAA+TGG | + | chr4_3:10494101-10494120 | Msa0629610:CDS | 20.0% |
| !! | ATCATGTTAAAAATTCCAAT+TGG | + | chr4_3:10492915-10492934 | Msa0629610:CDS | 20.0% |
| !! | TGACTCAATCAATTTATTTA+AGG | + | chr4_3:10493467-10493486 | Msa0629610:intron | 20.0% |
| !! | TTATATTCATAGTCAAATTG+AGG | + | chr4_3:10493726-10493745 | Msa0629610:intron | 20.0% |
| !! | TATGCAATTGGTATAAAATA+AGG | + | chr4_3:10494013-10494032 | Msa0629610:intron | 20.0% |
| !! | TTAGTGTCTTTAAATTTCAA+TGG | + | chr4_3:10494101-10494120 | Msa0629610:CDS | 20.0% |
| ! | TTAACATGATGATAAGAACA+TGG | - | chr4_3:10492905-10492924 | None:intergenic | 25.0% |
| ! | ATGTTAAAAATTCCAATTGG+TGG | + | chr4_3:10492918-10492937 | Msa0629610:CDS | 25.0% |
| ! | AGAGTAAAAGAATTACCAAA+TGG | + | chr4_3:10492948-10492967 | Msa0629610:CDS | 25.0% |
| !! | AAGTTAGTGTTATTGAATCA+GGG | + | chr4_3:10493113-10493132 | Msa0629610:intron | 25.0% |
| !!! | TACTACTAGTTCTATTACTT+TGG | + | chr4_3:10493159-10493178 | Msa0629610:intron | 25.0% |
| !! | TAGTTCTATTACTTTGGAAA+TGG | + | chr4_3:10493165-10493184 | Msa0629610:intron | 25.0% |
| !! | AGTTCTATTACTTTGGAAAT+GGG | + | chr4_3:10493166-10493185 | Msa0629610:intron | 25.0% |
| !! | AACCAATTTTATAGTGTCAA+TGG | + | chr4_3:10493216-10493235 | Msa0629610:intron | 25.0% |
| ! | TTCCATTGACACTATAAAAT+TGG | - | chr4_3:10493221-10493240 | None:intergenic | 25.0% |
| !! | TCAATCAATTTATTTAAGGC+TGG | + | chr4_3:10493471-10493490 | Msa0629610:intron | 25.0% |
| !!! | TGTAATTTATGATGGATGTA+GGG | - | chr4_3:10493604-10493623 | None:intergenic | 25.0% |
| !!! | ATGTAATTTATGATGGATGT+AGG | - | chr4_3:10493605-10493624 | None:intergenic | 25.0% |
| ! | ATTCATAGGAAATTTCTGAT+GGG | + | chr4_3:10494148-10494167 | Msa0629610:CDS | 25.0% |
| !!! | ATGCTCAAAAGTATTTCATT+AGG | + | chr4_3:10494254-10494273 | Msa0629610:CDS | 25.0% |
| ! | TATTTCATTAGGCAACTTAA+TGG | + | chr4_3:10494265-10494284 | Msa0629610:CDS | 25.0% |
| ! | TTAACATGATGATAAGAACA+TGG | - | chr4_3:10492905-10492924 | None:intergenic | 25.0% |
| ! | ATGTTAAAAATTCCAATTGG+TGG | + | chr4_3:10492918-10492937 | Msa0629610:CDS | 25.0% |
| ! | AGAGTAAAAGAATTACCAAA+TGG | + | chr4_3:10492948-10492967 | Msa0629610:CDS | 25.0% |
| !! | AAGTTAGTGTTATTGAATCA+GGG | + | chr4_3:10493113-10493132 | Msa0629610:intron | 25.0% |
| !!! | TACTACTAGTTCTATTACTT+TGG | + | chr4_3:10493159-10493178 | Msa0629610:intron | 25.0% |
| !! | TAGTTCTATTACTTTGGAAA+TGG | + | chr4_3:10493165-10493184 | Msa0629610:intron | 25.0% |
| !! | AGTTCTATTACTTTGGAAAT+GGG | + | chr4_3:10493166-10493185 | Msa0629610:intron | 25.0% |
| !! | AACCAATTTTATAGTGTCAA+TGG | + | chr4_3:10493216-10493235 | Msa0629610:intron | 25.0% |
| ! | TTCCATTGACACTATAAAAT+TGG | - | chr4_3:10493221-10493240 | None:intergenic | 25.0% |
| !! | TCAATCAATTTATTTAAGGC+TGG | + | chr4_3:10493471-10493490 | Msa0629610:intron | 25.0% |
| !!! | TGTAATTTATGATGGATGTA+GGG | - | chr4_3:10493604-10493623 | None:intergenic | 25.0% |
| !!! | ATGTAATTTATGATGGATGT+AGG | - | chr4_3:10493605-10493624 | None:intergenic | 25.0% |
| ! | ATTCATAGGAAATTTCTGAT+GGG | + | chr4_3:10494148-10494167 | Msa0629610:CDS | 25.0% |
| !!! | ATGCTCAAAAGTATTTCATT+AGG | + | chr4_3:10494254-10494273 | Msa0629610:CDS | 25.0% |
| ! | TATTTCATTAGGCAACTTAA+TGG | + | chr4_3:10494265-10494284 | Msa0629610:CDS | 25.0% |
| ! | TGGTAATTCTTTTACTCTCT+TGG | - | chr4_3:10492946-10492965 | None:intergenic | 30.0% |
| !!! | GTTTTCTTCTAAAGTCCATT+TGG | - | chr4_3:10492966-10492985 | None:intergenic | 30.0% |
| ! | ACATCACTAATAGTCTTACT+TGG | - | chr4_3:10493064-10493083 | None:intergenic | 30.0% |
| ! | GAAGTTAGTGTTATTGAATC+AGG | + | chr4_3:10493112-10493131 | Msa0629610:intron | 30.0% |
| TAGTAGTGTACATAGGAAAA+GGG | - | chr4_3:10493144-10493163 | None:intergenic | 30.0% | |
| ATTTGATTACCATATGCAAG+CGG | + | chr4_3:10493242-10493261 | Msa0629610:intron | 30.0% | |
| TGGAAGAAACCCAAAATAAT+AGG | - | chr4_3:10493322-10493341 | None:intergenic | 30.0% | |
| ACGTTAATTAAGCAAGCAAA+AGG | - | chr4_3:10493546-10493565 | None:intergenic | 30.0% | |
| TTTATACCAATTGCATACAG+TGG | - | chr4_3:10494010-10494029 | None:intergenic | 30.0% | |
| !! | GAGTTGCTAGTATGTTATTT+TGG | + | chr4_3:10494039-10494058 | Msa0629610:intron | 30.0% |
| AATTGATCCATCACATTCAT+AGG | + | chr4_3:10494134-10494153 | Msa0629610:CDS | 30.0% | |
| GAAATTTCCTATGAATGTGA+TGG | - | chr4_3:10494144-10494163 | None:intergenic | 30.0% | |
| CATTCATAGGAAATTTCTGA+TGG | + | chr4_3:10494147-10494166 | Msa0629610:CDS | 30.0% | |
| ! | GGTCTTAAGAAGTATAGTAA+AGG | + | chr4_3:10494169-10494188 | Msa0629610:CDS | 30.0% |
| ! | AGAAGTATAGTAAAGGAGAT+TGG | + | chr4_3:10494176-10494195 | Msa0629610:CDS | 30.0% |
| ! | TGGTAATTCTTTTACTCTCT+TGG | - | chr4_3:10492946-10492965 | None:intergenic | 30.0% |
| !!! | GTTTTCTTCTAAAGTCCATT+TGG | - | chr4_3:10492966-10492985 | None:intergenic | 30.0% |
| ! | ACATCACTAATAGTCTTACT+TGG | - | chr4_3:10493064-10493083 | None:intergenic | 30.0% |
| ! | GAAGTTAGTGTTATTGAATC+AGG | + | chr4_3:10493112-10493131 | Msa0629610:intron | 30.0% |
| TAGTAGTGTACATAGGAAAA+GGG | - | chr4_3:10493144-10493163 | None:intergenic | 30.0% | |
| ATTTGATTACCATATGCAAG+CGG | + | chr4_3:10493242-10493261 | Msa0629610:intron | 30.0% | |
| TGGAAGAAACCCAAAATAAT+AGG | - | chr4_3:10493322-10493341 | None:intergenic | 30.0% | |
| ACGTTAATTAAGCAAGCAAA+AGG | - | chr4_3:10493546-10493565 | None:intergenic | 30.0% | |
| TTTATACCAATTGCATACAG+TGG | - | chr4_3:10494010-10494029 | None:intergenic | 30.0% | |
| !! | GAGTTGCTAGTATGTTATTT+TGG | + | chr4_3:10494039-10494058 | Msa0629610:intron | 30.0% |
| AATTGATCCATCACATTCAT+AGG | + | chr4_3:10494134-10494153 | Msa0629610:CDS | 30.0% | |
| GAAATTTCCTATGAATGTGA+TGG | - | chr4_3:10494144-10494163 | None:intergenic | 30.0% | |
| CATTCATAGGAAATTTCTGA+TGG | + | chr4_3:10494147-10494166 | Msa0629610:CDS | 30.0% | |
| ! | GGTCTTAAGAAGTATAGTAA+AGG | + | chr4_3:10494169-10494188 | Msa0629610:CDS | 30.0% |
| ! | AGAAGTATAGTAAAGGAGAT+TGG | + | chr4_3:10494176-10494195 | Msa0629610:CDS | 30.0% |
| !! | CGCTTTGGCTTTATATGATA+AGG | + | chr4_3:10493000-10493019 | Msa0629610:CDS | 35.0% |
| GTAGTAGTGTACATAGGAAA+AGG | - | chr4_3:10493145-10493164 | None:intergenic | 35.0% | |
| GAACTAGTAGTAGTGTACAT+AGG | - | chr4_3:10493151-10493170 | None:intergenic | 35.0% | |
| AGTAAATTAAAGGGTTGAGG+GGG | - | chr4_3:10493299-10493318 | None:intergenic | 35.0% | |
| GAGTAAATTAAAGGGTTGAG+GGG | - | chr4_3:10493300-10493319 | None:intergenic | 35.0% | |
| GGAGTAAATTAAAGGGTTGA+GGG | - | chr4_3:10493301-10493320 | None:intergenic | 35.0% | |
| AGGAGTAAATTAAAGGGTTG+AGG | - | chr4_3:10493302-10493321 | None:intergenic | 35.0% | |
| ATATTTAAGGGGGTTCAAGA+TGG | - | chr4_3:10493342-10493361 | None:intergenic | 35.0% | |
| CTTGAACCCCCTTAAATATA+AGG | + | chr4_3:10493343-10493362 | Msa0629610:intron | 35.0% | |
| ! | TGCAAGCCTTATATTTAAGG+GGG | - | chr4_3:10493352-10493371 | None:intergenic | 35.0% |
| ! | GTGCAAGCCTTATATTTAAG+GGG | - | chr4_3:10493353-10493372 | None:intergenic | 35.0% |
| ! | GGTGCAAGCCTTATATTTAA+GGG | - | chr4_3:10493354-10493373 | None:intergenic | 35.0% |
| ! | TGGTGCAAGCCTTATATTTA+AGG | - | chr4_3:10493355-10493374 | None:intergenic | 35.0% |
| GTTTACAAATGAGAGAGAGT+TGG | - | chr4_3:10493375-10493394 | None:intergenic | 35.0% | |
| AAACGTAAAGTTGCACTCAT+TGG | + | chr4_3:10493391-10493410 | Msa0629610:intron | 35.0% | |
| GAGCATATTGTCTAATAACG+TGG | + | chr4_3:10493413-10493432 | Msa0629610:intron | 35.0% | |
| AATTAAGCAAGCAAAAGGCT+AGG | - | chr4_3:10493541-10493560 | None:intergenic | 35.0% | |
| ! | TGGATGTAGGGCTAAATTTT+AGG | - | chr4_3:10493592-10493611 | None:intergenic | 35.0% |
| AATTGCTTGGATGACAATTG+TGG | + | chr4_3:10493846-10493865 | Msa0629610:intron | 35.0% | |
| ! | CTCATGATTTTGTGACAACA+AGG | + | chr4_3:10494209-10494228 | Msa0629610:CDS | 35.0% |
| TTCATTAGGCAACTTAATGG+AGG | + | chr4_3:10494268-10494287 | Msa0629610:CDS | 35.0% | |
| TCATTAGGCAACTTAATGGA+GGG | + | chr4_3:10494269-10494288 | Msa0629610:CDS | 35.0% | |
| TAGTATCCATGACATCACAA+TGG | + | chr4_3:10494309-10494328 | Msa0629610:CDS | 35.0% | |
| !! | CGCTTTGGCTTTATATGATA+AGG | + | chr4_3:10493000-10493019 | Msa0629610:CDS | 35.0% |
| GTAGTAGTGTACATAGGAAA+AGG | - | chr4_3:10493145-10493164 | None:intergenic | 35.0% | |
| GAACTAGTAGTAGTGTACAT+AGG | - | chr4_3:10493151-10493170 | None:intergenic | 35.0% | |
| AGTAAATTAAAGGGTTGAGG+GGG | - | chr4_3:10493299-10493318 | None:intergenic | 35.0% | |
| GAGTAAATTAAAGGGTTGAG+GGG | - | chr4_3:10493300-10493319 | None:intergenic | 35.0% | |
| GGAGTAAATTAAAGGGTTGA+GGG | - | chr4_3:10493301-10493320 | None:intergenic | 35.0% | |
| AGGAGTAAATTAAAGGGTTG+AGG | - | chr4_3:10493302-10493321 | None:intergenic | 35.0% | |
| ATATTTAAGGGGGTTCAAGA+TGG | - | chr4_3:10493342-10493361 | None:intergenic | 35.0% | |
| CTTGAACCCCCTTAAATATA+AGG | + | chr4_3:10493343-10493362 | Msa0629610:intron | 35.0% | |
| ! | TGCAAGCCTTATATTTAAGG+GGG | - | chr4_3:10493352-10493371 | None:intergenic | 35.0% |
| ! | GTGCAAGCCTTATATTTAAG+GGG | - | chr4_3:10493353-10493372 | None:intergenic | 35.0% |
| ! | GGTGCAAGCCTTATATTTAA+GGG | - | chr4_3:10493354-10493373 | None:intergenic | 35.0% |
| ! | TGGTGCAAGCCTTATATTTA+AGG | - | chr4_3:10493355-10493374 | None:intergenic | 35.0% |
| GTTTACAAATGAGAGAGAGT+TGG | - | chr4_3:10493375-10493394 | None:intergenic | 35.0% | |
| AAACGTAAAGTTGCACTCAT+TGG | + | chr4_3:10493391-10493410 | Msa0629610:intron | 35.0% | |
| GAGCATATTGTCTAATAACG+TGG | + | chr4_3:10493413-10493432 | Msa0629610:intron | 35.0% | |
| AATTAAGCAAGCAAAAGGCT+AGG | - | chr4_3:10493541-10493560 | None:intergenic | 35.0% | |
| ! | TGGATGTAGGGCTAAATTTT+AGG | - | chr4_3:10493592-10493611 | None:intergenic | 35.0% |
| AATTGCTTGGATGACAATTG+TGG | + | chr4_3:10493846-10493865 | Msa0629610:intron | 35.0% | |
| ! | CTCATGATTTTGTGACAACA+AGG | + | chr4_3:10494209-10494228 | Msa0629610:CDS | 35.0% |
| TTCATTAGGCAACTTAATGG+AGG | + | chr4_3:10494268-10494287 | Msa0629610:CDS | 35.0% | |
| TCATTAGGCAACTTAATGGA+GGG | + | chr4_3:10494269-10494288 | Msa0629610:CDS | 35.0% | |
| TAGTATCCATGACATCACAA+TGG | + | chr4_3:10494309-10494328 | Msa0629610:CDS | 35.0% | |
| CAAGTTGTTTGAGAACGCTT+TGG | + | chr4_3:10492985-10493004 | Msa0629610:CDS | 40.0% | |
| TTTCTGCTACCATCATCCAA+CGG | - | chr4_3:10493036-10493055 | None:intergenic | 40.0% | |
| TATGTTTGCCCAAAGACCAA+AGG | + | chr4_3:10494066-10494085 | Msa0629610:intron | 40.0% | |
| ATGTTTGCCCAAAGACCAAA+GGG | + | chr4_3:10494067-10494086 | Msa0629610:intron | 40.0% | |
| CTAAAAACCACAGTTCCCTT+TGG | - | chr4_3:10494085-10494104 | None:intergenic | 40.0% | |
| CTTAATGGAGGGAAAGATAG+AGG | + | chr4_3:10494280-10494299 | Msa0629610:CDS | 40.0% | |
| GATTCACCATTGTGATGTCA+TGG | - | chr4_3:10494318-10494337 | None:intergenic | 40.0% | |
| CAAGTTGTTTGAGAACGCTT+TGG | + | chr4_3:10492985-10493004 | Msa0629610:CDS | 40.0% | |
| TTTCTGCTACCATCATCCAA+CGG | - | chr4_3:10493036-10493055 | None:intergenic | 40.0% | |
| TATGTTTGCCCAAAGACCAA+AGG | + | chr4_3:10494066-10494085 | Msa0629610:intron | 40.0% | |
| ATGTTTGCCCAAAGACCAAA+GGG | + | chr4_3:10494067-10494086 | Msa0629610:intron | 40.0% | |
| CTAAAAACCACAGTTCCCTT+TGG | - | chr4_3:10494085-10494104 | None:intergenic | 40.0% | |
| CTTAATGGAGGGAAAGATAG+AGG | + | chr4_3:10494280-10494299 | Msa0629610:CDS | 40.0% | |
| GATTCACCATTGTGATGTCA+TGG | - | chr4_3:10494318-10494337 | None:intergenic | 40.0% | |
| AAGCAAGCAAAAGGCTAGGT+AGG | - | chr4_3:10493537-10493556 | None:intergenic | 45.0% | |
| ! | CACAGTTCCCTTTGGTCTTT+GGG | - | chr4_3:10494077-10494096 | None:intergenic | 45.0% |
| ! | GCATGACTTGCAACTTGTGT+AGG | - | chr4_3:10494238-10494257 | None:intergenic | 45.0% |
| AAGCAAGCAAAAGGCTAGGT+AGG | - | chr4_3:10493537-10493556 | None:intergenic | 45.0% | |
| ! | CACAGTTCCCTTTGGTCTTT+GGG | - | chr4_3:10494077-10494096 | None:intergenic | 45.0% |
| ! | GCATGACTTGCAACTTGTGT+AGG | - | chr4_3:10494238-10494257 | None:intergenic | 45.0% |
| !!! | ATTTTTCAAATATATTATTT+TGG | + | chr4_3:10493916-10493935 | Msa0629610:intron | 5.0% |
| !!! | ATTTTTCAAATATATTATTT+TGG | + | chr4_3:10493916-10493935 | Msa0629610:intron | 5.0% |
| ACTCTCTTGGAGCCACCAAT+TGG | - | chr4_3:10492933-10492952 | None:intergenic | 50.0% | |
| TGCTACCATCATCCAACGGT+CGG | - | chr4_3:10493032-10493051 | None:intergenic | 50.0% | |
| GCAACGCCACTGTATGCAAT+TGG | + | chr4_3:10494001-10494020 | Msa0629610:intron | 50.0% | |
| ! | CCACAGTTCCCTTTGGTCTT+TGG | - | chr4_3:10494078-10494097 | None:intergenic | 50.0% |
| CCAAAGACCAAAGGGAACTG+TGG | + | chr4_3:10494075-10494094 | Msa0629610:intron | 50.0% | |
| ACTCTCTTGGAGCCACCAAT+TGG | - | chr4_3:10492933-10492952 | None:intergenic | 50.0% | |
| TGCTACCATCATCCAACGGT+CGG | - | chr4_3:10493032-10493051 | None:intergenic | 50.0% | |
| GCAACGCCACTGTATGCAAT+TGG | + | chr4_3:10494001-10494020 | Msa0629610:intron | 50.0% | |
| ! | CCACAGTTCCCTTTGGTCTT+TGG | - | chr4_3:10494078-10494097 | None:intergenic | 50.0% |
| CCAAAGACCAAAGGGAACTG+TGG | + | chr4_3:10494075-10494094 | Msa0629610:intron | 50.0% | |
| TACCATCATCCAACGGTCGG+GGG | - | chr4_3:10493029-10493048 | None:intergenic | 55.0% | |
| CTACCATCATCCAACGGTCG+GGG | - | chr4_3:10493030-10493049 | None:intergenic | 55.0% | |
| GCTACCATCATCCAACGGTC+GGG | - | chr4_3:10493031-10493050 | None:intergenic | 55.0% | |
| ! | AAGCTGGCTCCGCTTGCATA+TGG | - | chr4_3:10493254-10493273 | None:intergenic | 55.0% |
| TGCATCCCCTGGATACAAGC+TGG | - | chr4_3:10493270-10493289 | None:intergenic | 55.0% | |
| TTGCATACAGTGGCGTTGCC+AGG | - | chr4_3:10494000-10494019 | None:intergenic | 55.0% | |
| TACCATCATCCAACGGTCGG+GGG | - | chr4_3:10493029-10493048 | None:intergenic | 55.0% | |
| CTACCATCATCCAACGGTCG+GGG | - | chr4_3:10493030-10493049 | None:intergenic | 55.0% | |
| GCTACCATCATCCAACGGTC+GGG | - | chr4_3:10493031-10493050 | None:intergenic | 55.0% | |
| ! | AAGCTGGCTCCGCTTGCATA+TGG | - | chr4_3:10493254-10493273 | None:intergenic | 55.0% |
| TGCATCCCCTGGATACAAGC+TGG | - | chr4_3:10493270-10493289 | None:intergenic | 55.0% | |
| TTGCATACAGTGGCGTTGCC+AGG | - | chr4_3:10494000-10494019 | None:intergenic | 55.0% | |
| ATAAGGACACCCCCGACCGT+TGG | + | chr4_3:10493017-10493036 | Msa0629610:CDS | 60.0% | |
| AGCGGAGCCAGCTTGTATCC+AGG | + | chr4_3:10493260-10493279 | Msa0629610:intron | 60.0% | |
| GCGGAGCCAGCTTGTATCCA+GGG | + | chr4_3:10493261-10493280 | Msa0629610:intron | 60.0% | |
| CGGAGCCAGCTTGTATCCAG+GGG | + | chr4_3:10493262-10493281 | Msa0629610:intron | 60.0% | |
| AGGTTTGAACCCCCTGACCC+AGG | + | chr4_3:10493972-10493991 | Msa0629610:intron | 60.0% | |
| GGTTTGAACCCCCTGACCCA+GGG | + | chr4_3:10493973-10493992 | Msa0629610:intron | 60.0% | |
| ATAAGGACACCCCCGACCGT+TGG | + | chr4_3:10493017-10493036 | Msa0629610:CDS | 60.0% | |
| AGCGGAGCCAGCTTGTATCC+AGG | + | chr4_3:10493260-10493279 | Msa0629610:intron | 60.0% | |
| GCGGAGCCAGCTTGTATCCA+GGG | + | chr4_3:10493261-10493280 | Msa0629610:intron | 60.0% | |
| CGGAGCCAGCTTGTATCCAG+GGG | + | chr4_3:10493262-10493281 | Msa0629610:intron | 60.0% | |
| AGGTTTGAACCCCCTGACCC+AGG | + | chr4_3:10493972-10493991 | Msa0629610:intron | 60.0% | |
| GGTTTGAACCCCCTGACCCA+GGG | + | chr4_3:10493973-10493992 | Msa0629610:intron | 60.0% | |
| CACCCCCGACCGTTGGATGA+TGG | + | chr4_3:10493024-10493043 | Msa0629610:CDS | 65.0% | |
| TTGCCAGGACCCTGGGTCAG+GGG | - | chr4_3:10493985-10494004 | None:intergenic | 65.0% | |
| GTTGCCAGGACCCTGGGTCA+GGG | - | chr4_3:10493986-10494005 | None:intergenic | 65.0% | |
| AGTGGCGTTGCCAGGACCCT+GGG | - | chr4_3:10493992-10494011 | None:intergenic | 65.0% | |
| CACCCCCGACCGTTGGATGA+TGG | + | chr4_3:10493024-10493043 | Msa0629610:CDS | 65.0% | |
| TTGCCAGGACCCTGGGTCAG+GGG | - | chr4_3:10493985-10494004 | None:intergenic | 65.0% | |
| GTTGCCAGGACCCTGGGTCA+GGG | - | chr4_3:10493986-10494005 | None:intergenic | 65.0% | |
| AGTGGCGTTGCCAGGACCCT+GGG | - | chr4_3:10493992-10494011 | None:intergenic | 65.0% | |
| GGGGGTTCAGCTGCATCCCC+TGG | - | chr4_3:10493281-10493300 | None:intergenic | 70.0% | |
| AACCCCCTGACCCAGGGTCC+TGG | + | chr4_3:10493979-10493998 | Msa0629610:intron | 70.0% | |
| TGCCAGGACCCTGGGTCAGG+GGG | - | chr4_3:10493984-10494003 | None:intergenic | 70.0% | |
| CGTTGCCAGGACCCTGGGTC+AGG | - | chr4_3:10493987-10494006 | None:intergenic | 70.0% | |
| CAGTGGCGTTGCCAGGACCC+TGG | - | chr4_3:10493993-10494012 | None:intergenic | 70.0% | |
| GGGGGTTCAGCTGCATCCCC+TGG | - | chr4_3:10493281-10493300 | None:intergenic | 70.0% | |
| AACCCCCTGACCCAGGGTCC+TGG | + | chr4_3:10493979-10493998 | Msa0629610:intron | 70.0% | |
| TGCCAGGACCCTGGGTCAGG+GGG | - | chr4_3:10493984-10494003 | None:intergenic | 70.0% | |
| CGTTGCCAGGACCCTGGGTC+AGG | - | chr4_3:10493987-10494006 | None:intergenic | 70.0% | |
| CAGTGGCGTTGCCAGGACCC+TGG | - | chr4_3:10493993-10494012 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 10492881 | 10494360 | 10492881 | ID=Msa0629610;Name=Msa0629610 |
| chr4_3 | mRNA | 10492881 | 10494360 | 10492881 | ID=Msa0629610-mRNA-1;Parent=Msa0629610;Name=Msa0629610-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0|0|2|0|171 |
| chr4_3 | exon | 10492881 | 10493120 | 10492881 | ID=Msa0629610-mRNA-1:exon:3276;Parent=Msa0629610-mRNA-1 |
| chr4_3 | exon | 10494088 | 10494360 | 10494088 | ID=Msa0629610-mRNA-1:exon:3277;Parent=Msa0629610-mRNA-1 |
| chr4_3 | CDS | 10492881 | 10493120 | 10492881 | ID=Msa0629610-mRNA-1:cds;Parent=Msa0629610-mRNA-1 |
| chr4_3 | CDS | 10494088 | 10494360 | 10494088 | ID=Msa0629610-mRNA-1:cds;Parent=Msa0629610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
