Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629830 | MCI05308.1 | 91.304 | 46 | 4 | 0 | 16 | 61 | 21 | 66 | 5.19e-19 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629830 | sp|P51139|MSK3_MEDSA | 91.304 | 46 | 4 | 0 | 16 | 61 | 246 | 291 | 2.61e-21 | 90.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629830 | MtrunA17_Chr7g0270371 | 91.304 | 46 | 4 | 0 | 16 | 61 | 247 | 292 | 1.93e-22 | 90.9 |
| Msa0629830 | MtrunA17_Chr7g0246591 | 86.957 | 46 | 6 | 0 | 16 | 61 | 313 | 358 | 2.10e-21 | 88.6 |
| Msa0629830 | MtrunA17_Chr1g0193081 | 84.783 | 46 | 7 | 0 | 16 | 61 | 247 | 292 | 8.92e-21 | 86.3 |
| Msa0629830 | MtrunA17_Chr2g0277011 | 84.783 | 46 | 7 | 0 | 16 | 61 | 262 | 307 | 1.04e-20 | 86.3 |
| Msa0629830 | MtrunA17_Chr1g0194201 | 86.957 | 46 | 6 | 0 | 16 | 61 | 247 | 292 | 2.82e-20 | 85.1 |
| Msa0629830 | MtrunA17_Chr2g0320011 | 84.783 | 46 | 7 | 0 | 16 | 61 | 260 | 305 | 9.01e-20 | 83.6 |
| Msa0629830 | MtrunA17_Chr8g0350311 | 80.435 | 46 | 9 | 0 | 16 | 61 | 311 | 356 | 5.52e-19 | 81.6 |
| Msa0629830 | MtrunA17_Chr2g0284091 | 82.609 | 46 | 8 | 0 | 16 | 61 | 212 | 257 | 1.09e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629830 | AT5G14640.1 | 89.130 | 46 | 5 | 0 | 16 | 61 | 246 | 291 | 1.65e-21 | 88.6 |
| Msa0629830 | AT5G14640.2 | 89.130 | 46 | 5 | 0 | 16 | 61 | 246 | 291 | 1.65e-21 | 88.6 |
| Msa0629830 | AT5G26751.1 | 86.957 | 46 | 6 | 0 | 16 | 61 | 241 | 286 | 2.82e-21 | 88.2 |
| Msa0629830 | AT3G05840.2 | 86.957 | 46 | 6 | 0 | 16 | 61 | 245 | 290 | 2.88e-21 | 88.2 |
| Msa0629830 | AT3G05840.1 | 86.957 | 46 | 6 | 0 | 16 | 61 | 245 | 290 | 2.88e-21 | 88.2 |
| Msa0629830 | AT1G57870.1 | 84.783 | 46 | 7 | 0 | 16 | 61 | 254 | 299 | 1.39e-20 | 86.3 |
| Msa0629830 | AT1G57870.4 | 84.783 | 46 | 7 | 0 | 16 | 61 | 254 | 299 | 1.39e-20 | 86.3 |
| Msa0629830 | AT1G57870.2 | 84.783 | 46 | 7 | 0 | 16 | 61 | 254 | 299 | 1.39e-20 | 86.3 |
| Msa0629830 | AT1G57870.3 | 84.783 | 46 | 7 | 0 | 16 | 61 | 254 | 299 | 1.53e-20 | 86.3 |
| Msa0629830 | AT1G09840.3 | 82.609 | 46 | 8 | 0 | 16 | 61 | 255 | 300 | 4.22e-20 | 85.1 |
| Msa0629830 | AT1G09840.7 | 82.609 | 46 | 8 | 0 | 16 | 61 | 255 | 300 | 4.22e-20 | 85.1 |
| Msa0629830 | AT1G09840.10 | 82.609 | 46 | 8 | 0 | 16 | 61 | 255 | 300 | 4.22e-20 | 85.1 |
| Msa0629830 | AT1G09840.6 | 82.609 | 46 | 8 | 0 | 16 | 61 | 255 | 300 | 4.22e-20 | 85.1 |
| Msa0629830 | AT1G09840.4 | 82.609 | 46 | 8 | 0 | 16 | 61 | 255 | 300 | 4.22e-20 | 85.1 |
| Msa0629830 | AT1G09840.1 | 82.609 | 46 | 8 | 0 | 16 | 61 | 255 | 300 | 4.22e-20 | 85.1 |
| Msa0629830 | AT1G09840.9 | 82.609 | 46 | 8 | 0 | 16 | 61 | 255 | 300 | 4.22e-20 | 85.1 |
| Msa0629830 | AT1G09840.5 | 82.609 | 46 | 8 | 0 | 16 | 61 | 255 | 300 | 4.22e-20 | 85.1 |
| Msa0629830 | AT1G09840.8 | 82.609 | 46 | 8 | 0 | 16 | 61 | 255 | 300 | 4.22e-20 | 85.1 |
| Msa0629830 | AT1G09840.2 | 82.609 | 46 | 8 | 0 | 16 | 61 | 255 | 300 | 4.22e-20 | 85.1 |
| Msa0629830 | AT1G09840.11 | 82.609 | 46 | 8 | 0 | 16 | 61 | 128 | 173 | 5.43e-20 | 83.6 |
| Msa0629830 | AT4G18710.2 | 84.783 | 46 | 7 | 0 | 16 | 61 | 206 | 251 | 1.32e-19 | 82.0 |
| Msa0629830 | AT2G30980.1 | 82.609 | 46 | 8 | 0 | 16 | 61 | 244 | 289 | 2.11e-19 | 82.8 |
| Msa0629830 | AT4G00720.1 | 78.261 | 46 | 10 | 0 | 16 | 61 | 310 | 355 | 2.39e-19 | 82.8 |
| Msa0629830 | AT4G18710.1 | 84.783 | 46 | 7 | 0 | 16 | 61 | 212 | 257 | 2.83e-19 | 82.4 |
| Msa0629830 | AT1G06390.2 | 82.609 | 46 | 8 | 0 | 16 | 61 | 242 | 287 | 3.40e-19 | 82.4 |
| Msa0629830 | AT1G06390.1 | 82.609 | 46 | 8 | 0 | 16 | 61 | 242 | 287 | 3.40e-19 | 82.4 |
| Msa0629830 | AT3G61160.4 | 71.739 | 46 | 13 | 0 | 16 | 61 | 274 | 319 | 2.92e-17 | 77.0 |
| Msa0629830 | AT3G61160.1 | 71.739 | 46 | 13 | 0 | 16 | 61 | 274 | 319 | 2.99e-17 | 77.0 |
| Msa0629830 | AT3G61160.2 | 71.739 | 46 | 13 | 0 | 16 | 61 | 281 | 326 | 3.04e-17 | 77.0 |
| Msa0629830 | AT3G61160.5 | 71.739 | 46 | 13 | 0 | 16 | 61 | 274 | 319 | 7.64e-17 | 75.5 |
| Msa0629830 | AT3G61160.3 | 71.739 | 46 | 13 | 0 | 16 | 61 | 274 | 319 | 8.87e-17 | 75.1 |
| Msa0629830 | AT3G61160.6 | 71.739 | 46 | 13 | 0 | 16 | 61 | 281 | 326 | 1.04e-16 | 75.1 |
Find 24 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCGTTGGTTCTGTTGC+TGG | 0.315147 | 4_3:+11206056 | Msa0629830:CDS |
| TTTATTTCACATGATATATT+CGG | 0.351809 | 4_3:+11204812 | Msa0629830:CDS |
| TGGTCAGCTGGTTGCGTACT+TGG | 0.374738 | 4_3:+11204866 | Msa0629830:CDS |
| GAGAAACAACGCGGAATCTT+CGG | 0.378093 | 4_3:-11206039 | None:intergenic |
| TTCTACATAACCCAATTAAG+TGG | 0.394472 | 4_3:-11206203 | None:intergenic |
| ATATATCTCTGCTTGCAGTT+TGG | 0.430226 | 4_3:-11206146 | None:intergenic |
| GAAGGGGCTGTAAATTACTT+TGG | 0.434526 | 4_3:+11206173 | Msa0629830:CDS |
| TCGGAAACAAGTGTGACAAC+GGG | 0.454661 | 4_3:-11206020 | None:intergenic |
| GTCATTGACATCTGGTCAGC+TGG | 0.482850 | 4_3:+11204854 | Msa0629830:CDS |
| GGTTCTGTTGCTGGAGCAGC+CGG | 0.483184 | 4_3:+11206065 | Msa0629830:CDS |
| CCTTGATAATTTCCACATGT+TGG | 0.488985 | 4_3:-11205024 | None:intergenic |
| CAAGTGTGACAACGGGGAGC+AGG | 0.509456 | 4_3:-11206013 | None:intergenic |
| CCAACATGTGGAAATTATCA+AGG | 0.511188 | 4_3:+11205024 | Msa0629830:CDS |
| ACACCACAGTCATTGACATC+TGG | 0.524089 | 4_3:+11204846 | Msa0629830:CDS |
| GATTCCGCGTTGTTTCTCGT+TGG | 0.561139 | 4_3:+11206044 | Msa0629830:CDS |
| AAGCAGAGATATATCTCAGA+AGG | 0.575380 | 4_3:+11206155 | Msa0629830:CDS |
| TTCGGAAACAAGTGTGACAA+CGG | 0.588379 | 4_3:-11206021 | None:intergenic |
| AGCAGAGATATATCTCAGAA+GGG | 0.598380 | 4_3:+11206156 | Msa0629830:CDS |
| GCAGAGATATATCTCAGAAG+GGG | 0.666089 | 4_3:+11206157 | Msa0629830:CDS |
| CGGAAACAAGTGTGACAACG+GGG | 0.701541 | 4_3:-11206019 | None:intergenic |
| GAGTGGAGTAGACCAACATG+TGG | 0.706323 | 4_3:+11205012 | Msa0629830:CDS |
| CCACTCTCACCAGAAAACAG+TGG | 0.732571 | 4_3:-11204995 | None:intergenic |
| TGACCAGATGTCAATGACTG+TGG | 0.757242 | 4_3:-11204849 | None:intergenic |
| AGAACCAACGAGAAACAACG+CGG | 0.763020 | 4_3:-11206048 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATAAATTATAATT+AGG | - | chr4_3:11205244-11205263 | None:intergenic | 0.0% |
| !! | TATATATATAAATTATAATT+AGG | - | chr4_3:11205244-11205263 | None:intergenic | 0.0% |
| !!! | TATTTTTAGTTTAGTTAATT+CGG | + | chr4_3:11205153-11205172 | Msa0629830:intron | 10.0% |
| !!! | ATTTTTTTTTATATAGCTTT+TGG | - | chr4_3:11205840-11205859 | None:intergenic | 10.0% |
| !! | AAAAGCTATATAAAAAAAAA+TGG | + | chr4_3:11205839-11205858 | Msa0629830:intron | 10.0% |
| !!! | TATTTTTAGTTTAGTTAATT+CGG | + | chr4_3:11205153-11205172 | Msa0629830:intron | 10.0% |
| !!! | ATTTTTTTTTATATAGCTTT+TGG | - | chr4_3:11205840-11205859 | None:intergenic | 10.0% |
| !! | AAAAGCTATATAAAAAAAAA+TGG | + | chr4_3:11205839-11205858 | Msa0629830:intron | 10.0% |
| !! | TTTATTTCACATGATATATT+CGG | + | chr4_3:11204812-11204831 | Msa0629830:CDS | 15.0% |
| !! | AACTATACAAATTAGAATTA+TGG | - | chr4_3:11205604-11205623 | None:intergenic | 15.0% |
| !! | TTTATTTCACATGATATATT+CGG | + | chr4_3:11204812-11204831 | Msa0629830:CDS | 15.0% |
| !! | AACTATACAAATTAGAATTA+TGG | - | chr4_3:11205604-11205623 | None:intergenic | 15.0% |
| !!! | ATAAATGATGATGATTTTTC+CGG | - | chr4_3:11206087-11206106 | None:intergenic | 20.0% |
| !!! | ATAAATGATGATGATTTTTC+CGG | - | chr4_3:11206087-11206106 | None:intergenic | 20.0% |
| ! | CTACTTCAAAAAATTACTTC+TGG | + | chr4_3:11204785-11204804 | Msa0629830:CDS | 25.0% |
| ! | ATTTAATCATAGCTCAGTTA+TGG | - | chr4_3:11205424-11205443 | None:intergenic | 25.0% |
| ! | AGAATTATGGATCAAAAGAT+TGG | - | chr4_3:11205591-11205610 | None:intergenic | 25.0% |
| ! | GAAGTGAATGTAAATGAAAA+TGG | + | chr4_3:11205723-11205742 | Msa0629830:intron | 25.0% |
| !!! | ATACTAACATGTTGCTTTAA+CGG | + | chr4_3:11205948-11205967 | Msa0629830:intron | 25.0% |
| ! | CTACTTCAAAAAATTACTTC+TGG | + | chr4_3:11204785-11204804 | Msa0629830:CDS | 25.0% |
| ! | ATTTAATCATAGCTCAGTTA+TGG | - | chr4_3:11205424-11205443 | None:intergenic | 25.0% |
| ! | AGAATTATGGATCAAAAGAT+TGG | - | chr4_3:11205591-11205610 | None:intergenic | 25.0% |
| ! | GAAGTGAATGTAAATGAAAA+TGG | + | chr4_3:11205723-11205742 | Msa0629830:intron | 25.0% |
| !!! | ATACTAACATGTTGCTTTAA+CGG | + | chr4_3:11205948-11205967 | Msa0629830:intron | 25.0% |
| TAAACTTGGGAAATCTTTGT+AGG | + | chr4_3:11205266-11205285 | Msa0629830:intron | 30.0% | |
| AAGTCGTATCGAAGAATATA+TGG | + | chr4_3:11205365-11205384 | Msa0629830:intron | 30.0% | |
| AAATATTAACCGTGTTAGAG+TGG | + | chr4_3:11205465-11205484 | Msa0629830:intron | 30.0% | |
| TTGTTGTATTCCTAACGAAT+AGG | + | chr4_3:11205493-11205512 | Msa0629830:intron | 30.0% | |
| TCATGCTATAGTTCATACTT+TGG | + | chr4_3:11205562-11205581 | Msa0629830:intron | 30.0% | |
| TCATTTACATTCACTTCACA+TGG | - | chr4_3:11205720-11205739 | None:intergenic | 30.0% | |
| TCATTCTTTCACGTGAATAA+AGG | + | chr4_3:11205771-11205790 | Msa0629830:intron | 30.0% | |
| !!! | CTTTTGGAGTTGTAAATTAG+CGG | - | chr4_3:11205824-11205843 | None:intergenic | 30.0% |
| ! | GAAAATGTTAAGAAGTACGT+TGG | + | chr4_3:11205861-11205880 | Msa0629830:intron | 30.0% |
| !!! | TTGGTTTTGTTCCACTTAAT+TGG | + | chr4_3:11206192-11206211 | Msa0629830:CDS | 30.0% |
| !!! | TGGTTTTGTTCCACTTAATT+GGG | + | chr4_3:11206193-11206212 | Msa0629830:CDS | 30.0% |
| TAAACTTGGGAAATCTTTGT+AGG | + | chr4_3:11205266-11205285 | Msa0629830:intron | 30.0% | |
| AAGTCGTATCGAAGAATATA+TGG | + | chr4_3:11205365-11205384 | Msa0629830:intron | 30.0% | |
| AAATATTAACCGTGTTAGAG+TGG | + | chr4_3:11205465-11205484 | Msa0629830:intron | 30.0% | |
| TTGTTGTATTCCTAACGAAT+AGG | + | chr4_3:11205493-11205512 | Msa0629830:intron | 30.0% | |
| TCATGCTATAGTTCATACTT+TGG | + | chr4_3:11205562-11205581 | Msa0629830:intron | 30.0% | |
| TCATTTACATTCACTTCACA+TGG | - | chr4_3:11205720-11205739 | None:intergenic | 30.0% | |
| TCATTCTTTCACGTGAATAA+AGG | + | chr4_3:11205771-11205790 | Msa0629830:intron | 30.0% | |
| !!! | CTTTTGGAGTTGTAAATTAG+CGG | - | chr4_3:11205824-11205843 | None:intergenic | 30.0% |
| ! | GAAAATGTTAAGAAGTACGT+TGG | + | chr4_3:11205861-11205880 | Msa0629830:intron | 30.0% |
| !!! | TTGGTTTTGTTCCACTTAAT+TGG | + | chr4_3:11206192-11206211 | Msa0629830:CDS | 30.0% |
| !!! | TGGTTTTGTTCCACTTAATT+GGG | + | chr4_3:11206193-11206212 | Msa0629830:CDS | 30.0% |
| ! | CCTTGATAATTTCCACATGT+TGG | - | chr4_3:11205027-11205046 | None:intergenic | 35.0% |
| CCAACATGTGGAAATTATCA+AGG | + | chr4_3:11205024-11205043 | Msa0629830:CDS | 35.0% | |
| ATATGTTCAAGCTAGTAGCA+AGG | - | chr4_3:11205092-11205111 | None:intergenic | 35.0% | |
| GTTAATTCGGAAGTTTCATG+TGG | + | chr4_3:11205166-11205185 | Msa0629830:intron | 35.0% | |
| ACTTGATTTCTTCCCTTGTT+GGG | - | chr4_3:11205214-11205233 | None:intergenic | 35.0% | |
| ACAAAAATGCCACTCTAACA+CGG | - | chr4_3:11205477-11205496 | None:intergenic | 35.0% | |
| !! | AATGAGTGGAAAGCATTTCA+AGG | - | chr4_3:11205756-11205775 | None:intergenic | 35.0% |
| TATTCACGTGAAAGAATGAG+TGG | - | chr4_3:11205770-11205789 | None:intergenic | 35.0% | |
| TTGTAAATTAGCGGCATTCA+TGG | - | chr4_3:11205815-11205834 | None:intergenic | 35.0% | |
| !! | ATCGCGCTTTTGTTTATTTG+TGG | + | chr4_3:11206111-11206130 | Msa0629830:CDS | 35.0% |
| !! | TCGCGCTTTTGTTTATTTGT+GGG | + | chr4_3:11206112-11206131 | Msa0629830:CDS | 35.0% |
| ATATATCTCTGCTTGCAGTT+TGG | - | chr4_3:11206149-11206168 | None:intergenic | 35.0% | |
| AAGCAGAGATATATCTCAGA+AGG | + | chr4_3:11206155-11206174 | Msa0629830:CDS | 35.0% | |
| AGCAGAGATATATCTCAGAA+GGG | + | chr4_3:11206156-11206175 | Msa0629830:CDS | 35.0% | |
| ! | CCTTGATAATTTCCACATGT+TGG | - | chr4_3:11205027-11205046 | None:intergenic | 35.0% |
| CCAACATGTGGAAATTATCA+AGG | + | chr4_3:11205024-11205043 | Msa0629830:CDS | 35.0% | |
| ATATGTTCAAGCTAGTAGCA+AGG | - | chr4_3:11205092-11205111 | None:intergenic | 35.0% | |
| GTTAATTCGGAAGTTTCATG+TGG | + | chr4_3:11205166-11205185 | Msa0629830:intron | 35.0% | |
| ACTTGATTTCTTCCCTTGTT+GGG | - | chr4_3:11205214-11205233 | None:intergenic | 35.0% | |
| ACAAAAATGCCACTCTAACA+CGG | - | chr4_3:11205477-11205496 | None:intergenic | 35.0% | |
| !! | AATGAGTGGAAAGCATTTCA+AGG | - | chr4_3:11205756-11205775 | None:intergenic | 35.0% |
| TATTCACGTGAAAGAATGAG+TGG | - | chr4_3:11205770-11205789 | None:intergenic | 35.0% | |
| TTGTAAATTAGCGGCATTCA+TGG | - | chr4_3:11205815-11205834 | None:intergenic | 35.0% | |
| !! | ATCGCGCTTTTGTTTATTTG+TGG | + | chr4_3:11206111-11206130 | Msa0629830:CDS | 35.0% |
| !! | TCGCGCTTTTGTTTATTTGT+GGG | + | chr4_3:11206112-11206131 | Msa0629830:CDS | 35.0% |
| ATATATCTCTGCTTGCAGTT+TGG | - | chr4_3:11206149-11206168 | None:intergenic | 35.0% | |
| AAGCAGAGATATATCTCAGA+AGG | + | chr4_3:11206155-11206174 | Msa0629830:CDS | 35.0% | |
| AGCAGAGATATATCTCAGAA+GGG | + | chr4_3:11206156-11206175 | Msa0629830:CDS | 35.0% | |
| !! | GTACTTGGTGAACTTTTGCT+TGG | + | chr4_3:11204881-11204900 | Msa0629830:CDS | 40.0% |
| ! | TCTTATCAGCCACTGTTTTC+TGG | + | chr4_3:11204986-11205005 | Msa0629830:intron | 40.0% |
| CTTGATTTCTTCCCTTGTTG+GGG | - | chr4_3:11205213-11205232 | None:intergenic | 40.0% | |
| CACTTGATTTCTTCCCTTGT+TGG | - | chr4_3:11205215-11205234 | None:intergenic | 40.0% | |
| TGACTACACTCCTATTCGTT+AGG | - | chr4_3:11205506-11205525 | None:intergenic | 40.0% | |
| !!! | CATGGAAGAAGCATCAGTTT+TGG | - | chr4_3:11205797-11205816 | None:intergenic | 40.0% |
| AGGTGATTTAGAAGCTGAAC+CGG | - | chr4_3:11205996-11206015 | None:intergenic | 40.0% | |
| TTCGGAAACAAGTGTGACAA+CGG | - | chr4_3:11206024-11206043 | None:intergenic | 40.0% | |
| GCAGAGATATATCTCAGAAG+GGG | + | chr4_3:11206157-11206176 | Msa0629830:CDS | 40.0% | |
| GAAGGGGCTGTAAATTACTT+TGG | + | chr4_3:11206173-11206192 | Msa0629830:CDS | 40.0% | |
| !! | GTACTTGGTGAACTTTTGCT+TGG | + | chr4_3:11204881-11204900 | Msa0629830:CDS | 40.0% |
| ! | TCTTATCAGCCACTGTTTTC+TGG | + | chr4_3:11204986-11205005 | Msa0629830:intron | 40.0% |
| CTTGATTTCTTCCCTTGTTG+GGG | - | chr4_3:11205213-11205232 | None:intergenic | 40.0% | |
| CACTTGATTTCTTCCCTTGT+TGG | - | chr4_3:11205215-11205234 | None:intergenic | 40.0% | |
| TGACTACACTCCTATTCGTT+AGG | - | chr4_3:11205506-11205525 | None:intergenic | 40.0% | |
| !!! | CATGGAAGAAGCATCAGTTT+TGG | - | chr4_3:11205797-11205816 | None:intergenic | 40.0% |
| AGGTGATTTAGAAGCTGAAC+CGG | - | chr4_3:11205996-11206015 | None:intergenic | 40.0% | |
| TTCGGAAACAAGTGTGACAA+CGG | - | chr4_3:11206024-11206043 | None:intergenic | 40.0% | |
| GCAGAGATATATCTCAGAAG+GGG | + | chr4_3:11206157-11206176 | Msa0629830:CDS | 40.0% | |
| GAAGGGGCTGTAAATTACTT+TGG | + | chr4_3:11206173-11206192 | Msa0629830:CDS | 40.0% | |
| ACACCACAGTCATTGACATC+TGG | + | chr4_3:11204846-11204865 | Msa0629830:CDS | 45.0% | |
| TGACCAGATGTCAATGACTG+TGG | - | chr4_3:11204852-11204871 | None:intergenic | 45.0% | |
| ACGCAAAGAAGCTAGTTACC+TGG | - | chr4_3:11204907-11204926 | None:intergenic | 45.0% | |
| CTAGCTTCTTTGCGTATGCT+TGG | + | chr4_3:11204912-11204931 | Msa0629830:intron | 45.0% | |
| GTTTCATGTGGTTCACTTGC+AGG | + | chr4_3:11205178-11205197 | Msa0629830:intron | 45.0% | |
| ! | GTGGTTCACTTGCAGGTTTT+AGG | + | chr4_3:11205185-11205204 | Msa0629830:intron | 45.0% |
| !!! | AGGTTTTAGGTACCCCAACA+AGG | + | chr4_3:11205198-11205217 | Msa0629830:intron | 45.0% |
| !!! | GGTTTTAGGTACCCCAACAA+GGG | + | chr4_3:11205199-11205218 | Msa0629830:intron | 45.0% |
| AACAAAACCACCCTCAATGC+CGG | + | chr4_3:11205974-11205993 | Msa0629830:intron | 45.0% | |
| TCGGAAACAAGTGTGACAAC+GGG | - | chr4_3:11206023-11206042 | None:intergenic | 45.0% | |
| GAGAAACAACGCGGAATCTT+CGG | - | chr4_3:11206042-11206061 | None:intergenic | 45.0% | |
| AGAACCAACGAGAAACAACG+CGG | - | chr4_3:11206051-11206070 | None:intergenic | 45.0% | |
| !! | TTTCTCGTTGGTTCTGTTGC+TGG | + | chr4_3:11206056-11206075 | Msa0629830:CDS | 45.0% |
| ACACCACAGTCATTGACATC+TGG | + | chr4_3:11204846-11204865 | Msa0629830:CDS | 45.0% | |
| TGACCAGATGTCAATGACTG+TGG | - | chr4_3:11204852-11204871 | None:intergenic | 45.0% | |
| ACGCAAAGAAGCTAGTTACC+TGG | - | chr4_3:11204907-11204926 | None:intergenic | 45.0% | |
| CTAGCTTCTTTGCGTATGCT+TGG | + | chr4_3:11204912-11204931 | Msa0629830:intron | 45.0% | |
| GTTTCATGTGGTTCACTTGC+AGG | + | chr4_3:11205178-11205197 | Msa0629830:intron | 45.0% | |
| ! | GTGGTTCACTTGCAGGTTTT+AGG | + | chr4_3:11205185-11205204 | Msa0629830:intron | 45.0% |
| !!! | AGGTTTTAGGTACCCCAACA+AGG | + | chr4_3:11205198-11205217 | Msa0629830:intron | 45.0% |
| !!! | GGTTTTAGGTACCCCAACAA+GGG | + | chr4_3:11205199-11205218 | Msa0629830:intron | 45.0% |
| AACAAAACCACCCTCAATGC+CGG | + | chr4_3:11205974-11205993 | Msa0629830:intron | 45.0% | |
| TCGGAAACAAGTGTGACAAC+GGG | - | chr4_3:11206023-11206042 | None:intergenic | 45.0% | |
| GAGAAACAACGCGGAATCTT+CGG | - | chr4_3:11206042-11206061 | None:intergenic | 45.0% | |
| AGAACCAACGAGAAACAACG+CGG | - | chr4_3:11206051-11206070 | None:intergenic | 45.0% | |
| !! | TTTCTCGTTGGTTCTGTTGC+TGG | + | chr4_3:11206056-11206075 | Msa0629830:CDS | 45.0% |
| !! | TTTATATATATATATAAACT+TGG | + | chr4_3:11205252-11205271 | Msa0629830:intron | 5.0% |
| !! | TTATATATATATATAAACTT+GGG | + | chr4_3:11205253-11205272 | Msa0629830:intron | 5.0% |
| !! | TTTATATATATATATAAACT+TGG | + | chr4_3:11205252-11205271 | Msa0629830:intron | 5.0% |
| !! | TTATATATATATATAAACTT+GGG | + | chr4_3:11205253-11205272 | Msa0629830:intron | 5.0% |
| GTCATTGACATCTGGTCAGC+TGG | + | chr4_3:11204854-11204873 | Msa0629830:CDS | 50.0% | |
| ! | TGGTGAACTTTTGCTTGGCC+AGG | + | chr4_3:11204886-11204905 | Msa0629830:CDS | 50.0% |
| CCACTCTCACCAGAAAACAG+TGG | - | chr4_3:11204998-11205017 | None:intergenic | 50.0% | |
| !! | CCACTGTTTTCTGGTGAGAG+TGG | + | chr4_3:11204995-11205014 | Msa0629830:CDS | 50.0% |
| GAGTGGAGTAGACCAACATG+TGG | + | chr4_3:11205012-11205031 | Msa0629830:CDS | 50.0% | |
| ! | AGAAGCTGAACCGGCATTGA+GGG | - | chr4_3:11205987-11206006 | None:intergenic | 50.0% |
| TAGAAGCTGAACCGGCATTG+AGG | - | chr4_3:11205988-11206007 | None:intergenic | 50.0% | |
| CGGAAACAAGTGTGACAACG+GGG | - | chr4_3:11206022-11206041 | None:intergenic | 50.0% | |
| !! | GATTCCGCGTTGTTTCTCGT+TGG | + | chr4_3:11206044-11206063 | Msa0629830:CDS | 50.0% |
| GTCATTGACATCTGGTCAGC+TGG | + | chr4_3:11204854-11204873 | Msa0629830:CDS | 50.0% | |
| ! | TGGTGAACTTTTGCTTGGCC+AGG | + | chr4_3:11204886-11204905 | Msa0629830:CDS | 50.0% |
| CCACTCTCACCAGAAAACAG+TGG | - | chr4_3:11204998-11205017 | None:intergenic | 50.0% | |
| !! | CCACTGTTTTCTGGTGAGAG+TGG | + | chr4_3:11204995-11205014 | Msa0629830:CDS | 50.0% |
| GAGTGGAGTAGACCAACATG+TGG | + | chr4_3:11205012-11205031 | Msa0629830:CDS | 50.0% | |
| ! | AGAAGCTGAACCGGCATTGA+GGG | - | chr4_3:11205987-11206006 | None:intergenic | 50.0% |
| TAGAAGCTGAACCGGCATTG+AGG | - | chr4_3:11205988-11206007 | None:intergenic | 50.0% | |
| CGGAAACAAGTGTGACAACG+GGG | - | chr4_3:11206022-11206041 | None:intergenic | 50.0% | |
| !! | GATTCCGCGTTGTTTCTCGT+TGG | + | chr4_3:11206044-11206063 | Msa0629830:CDS | 50.0% |
| TGGTCAGCTGGTTGCGTACT+TGG | + | chr4_3:11204866-11204885 | Msa0629830:CDS | 55.0% | |
| TGGTCAGCTGGTTGCGTACT+TGG | + | chr4_3:11204866-11204885 | Msa0629830:CDS | 55.0% | |
| ! | AGCTGAACCGGCATTGAGGG+TGG | - | chr4_3:11205984-11206003 | None:intergenic | 60.0% |
| CAAGTGTGACAACGGGGAGC+AGG | - | chr4_3:11206016-11206035 | None:intergenic | 60.0% | |
| GGTTCTGTTGCTGGAGCAGC+CGG | + | chr4_3:11206065-11206084 | Msa0629830:CDS | 60.0% | |
| ! | AGCTGAACCGGCATTGAGGG+TGG | - | chr4_3:11205984-11206003 | None:intergenic | 60.0% |
| CAAGTGTGACAACGGGGAGC+AGG | - | chr4_3:11206016-11206035 | None:intergenic | 60.0% | |
| GGTTCTGTTGCTGGAGCAGC+CGG | + | chr4_3:11206065-11206084 | Msa0629830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 11204782 | 11206223 | 11204782 | ID=Msa0629830;Name=Msa0629830 |
| chr4_3 | mRNA | 11204782 | 11206223 | 11204782 | ID=Msa0629830-mRNA-1;Parent=Msa0629830;Name=Msa0629830-mRNA-1;_AED=0.71;_eAED=0.71;_QI=0|0.5|0.33|0.66|1|1|3|0|132 |
| chr4_3 | exon | 11204782 | 11204907 | 11204782 | ID=Msa0629830-mRNA-1:exon:3382;Parent=Msa0629830-mRNA-1 |
| chr4_3 | exon | 11204995 | 11205045 | 11204995 | ID=Msa0629830-mRNA-1:exon:3383;Parent=Msa0629830-mRNA-1 |
| chr4_3 | exon | 11206002 | 11206223 | 11206002 | ID=Msa0629830-mRNA-1:exon:3384;Parent=Msa0629830-mRNA-1 |
| chr4_3 | CDS | 11204782 | 11204907 | 11204782 | ID=Msa0629830-mRNA-1:cds;Parent=Msa0629830-mRNA-1 |
| chr4_3 | CDS | 11204995 | 11205045 | 11204995 | ID=Msa0629830-mRNA-1:cds;Parent=Msa0629830-mRNA-1 |
| chr4_3 | CDS | 11206002 | 11206223 | 11206002 | ID=Msa0629830-mRNA-1:cds;Parent=Msa0629830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
