Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632240 | XP_013455021.2 | 86.581 | 313 | 40 | 1 | 1 | 313 | 1 | 311 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632240 | sp|Q8L9Y3|ARR14_ARATH | 39.163 | 263 | 119 | 6 | 7 | 232 | 4 | 262 | 8.83e-55 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632240 | A0A396I0H3 | 84.395 | 314 | 46 | 2 | 1 | 313 | 1 | 312 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0632240 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632240 | MtrunA17_Chr4g0009851 | 84.395 | 314 | 46 | 2 | 1 | 313 | 1 | 312 | 0.0 | 545 |
| Msa0632240 | MtrunA17_Chr4g0009981 | 86.207 | 261 | 34 | 1 | 53 | 313 | 1 | 259 | 1.93e-169 | 470 |
| Msa0632240 | MtrunA17_Chr4g0009901 | 75.620 | 242 | 57 | 1 | 1 | 242 | 1 | 240 | 2.14e-128 | 367 |
| Msa0632240 | MtrunA17_Chr4g0011071 | 78.417 | 139 | 28 | 1 | 55 | 193 | 35 | 171 | 8.34e-74 | 224 |
| Msa0632240 | MtrunA17_Chr6g0471041 | 47.099 | 293 | 136 | 8 | 10 | 296 | 14 | 293 | 4.68e-71 | 226 |
| Msa0632240 | MtrunA17_Chr1g0161431 | 37.534 | 373 | 166 | 9 | 2 | 309 | 3 | 373 | 3.34e-69 | 226 |
| Msa0632240 | MtrunA17_Chr4g0009991 | 77.311 | 119 | 24 | 2 | 101 | 219 | 1 | 116 | 5.53e-57 | 180 |
| Msa0632240 | MtrunA17_Chr3g0123131 | 39.526 | 253 | 120 | 5 | 10 | 231 | 13 | 263 | 2.15e-56 | 191 |
| Msa0632240 | MtrunA17_Chr8g0376881 | 38.931 | 262 | 127 | 5 | 9 | 239 | 24 | 283 | 4.39e-56 | 190 |
| Msa0632240 | MtrunA17_Chr4g0067981 | 36.890 | 328 | 172 | 8 | 10 | 308 | 31 | 352 | 5.28e-56 | 192 |
| Msa0632240 | MtrunA17_Chr2g0294911 | 39.623 | 265 | 132 | 4 | 10 | 248 | 29 | 291 | 1.48e-55 | 189 |
| Msa0632240 | MtrunA17_Chr4g0010001 | 84.270 | 89 | 14 | 0 | 1 | 89 | 1 | 89 | 6.98e-52 | 166 |
| Msa0632240 | MtrunA17_Chr7g0275401 | 37.200 | 250 | 130 | 4 | 7 | 229 | 2 | 251 | 1.05e-50 | 169 |
| Msa0632240 | MtrunA17_Chr1g0149841 | 39.431 | 246 | 123 | 3 | 7 | 226 | 2 | 247 | 1.35e-50 | 174 |
| Msa0632240 | MtrunA17_Chr8g0391911 | 38.430 | 242 | 121 | 4 | 4 | 219 | 3 | 242 | 3.78e-50 | 167 |
| Msa0632240 | MtrunA17_Chr5g0423031 | 80.899 | 89 | 17 | 0 | 1 | 89 | 1 | 89 | 2.89e-47 | 157 |
| Msa0632240 | MtrunA17_Chr3g0137101 | 38.866 | 247 | 121 | 4 | 10 | 226 | 8 | 254 | 1.10e-46 | 166 |
| Msa0632240 | MtrunA17_Chr8g0383961 | 44.492 | 236 | 98 | 8 | 1 | 231 | 1 | 208 | 3.90e-46 | 157 |
| Msa0632240 | MtrunA17_Chr7g0275891 | 35.125 | 279 | 140 | 6 | 7 | 244 | 2 | 280 | 1.59e-45 | 157 |
| Msa0632240 | MtrunA17_Chr4g0074401 | 33.200 | 250 | 141 | 4 | 10 | 233 | 17 | 266 | 6.02e-43 | 155 |
| Msa0632240 | MtrunA17_Chr2g0304841 | 34.902 | 255 | 131 | 4 | 10 | 229 | 18 | 272 | 1.08e-42 | 155 |
| Msa0632240 | MtrunA17_Chr4g0074411 | 33.065 | 248 | 143 | 4 | 9 | 233 | 17 | 264 | 3.00e-42 | 154 |
| Msa0632240 | MtrunA17_Chr1g0149851 | 34.866 | 261 | 129 | 4 | 7 | 226 | 2 | 262 | 2.37e-41 | 150 |
| Msa0632240 | MtrunA17_Chr6g0456631 | 43.125 | 160 | 87 | 2 | 4 | 161 | 3 | 160 | 8.92e-41 | 140 |
| Msa0632240 | MtrunA17_Chr3g0134461 | 37.264 | 212 | 104 | 4 | 10 | 219 | 8 | 192 | 9.12e-39 | 135 |
| Msa0632240 | MtrunA17_Chr3g0134481 | 35.586 | 222 | 103 | 4 | 1 | 221 | 1 | 183 | 5.94e-37 | 130 |
| Msa0632240 | MtrunA17_Chr4g0074421 | 37.017 | 181 | 94 | 3 | 59 | 219 | 2 | 182 | 1.78e-35 | 127 |
| Msa0632240 | MtrunA17_Chr1g0149831 | 39.130 | 184 | 84 | 3 | 68 | 226 | 1 | 181 | 3.26e-32 | 119 |
| Msa0632240 | MtrunA17_Chr8g0350761 | 23.529 | 357 | 213 | 9 | 12 | 309 | 19 | 374 | 8.99e-22 | 95.1 |
| Msa0632240 | MtrunA17_Chr6g0473731 | 32.749 | 171 | 95 | 3 | 89 | 248 | 10 | 171 | 2.66e-20 | 90.9 |
| Msa0632240 | MtrunA17_Chr2g0324891 | 36.559 | 93 | 58 | 1 | 135 | 226 | 125 | 217 | 3.35e-14 | 72.8 |
| Msa0632240 | MtrunA17_Chr5g0417521 | 55.556 | 54 | 23 | 1 | 170 | 222 | 15 | 68 | 1.04e-13 | 70.9 |
| Msa0632240 | MtrunA17_Chr6g0461641 | 44.872 | 78 | 42 | 1 | 170 | 246 | 42 | 119 | 2.89e-13 | 69.7 |
| Msa0632240 | MtrunA17_Chr7g0261911 | 40.594 | 101 | 55 | 3 | 161 | 256 | 253 | 353 | 4.60e-13 | 69.3 |
| Msa0632240 | MtrunA17_Chr4g0040481 | 48.276 | 58 | 30 | 0 | 169 | 226 | 157 | 214 | 5.15e-13 | 69.3 |
| Msa0632240 | MtrunA17_Chr7g0254981 | 40.659 | 91 | 51 | 2 | 168 | 257 | 48 | 136 | 5.86e-13 | 68.2 |
| Msa0632240 | MtrunA17_Chr4g0042451 | 51.852 | 54 | 25 | 1 | 170 | 222 | 17 | 70 | 1.22e-12 | 67.8 |
| Msa0632240 | MtrunA17_Chr2g0321461 | 53.704 | 54 | 24 | 1 | 170 | 222 | 45 | 98 | 1.79e-12 | 67.4 |
| Msa0632240 | MtrunA17_Chr5g0400241 | 35.294 | 85 | 55 | 0 | 164 | 248 | 305 | 389 | 2.35e-12 | 67.4 |
| Msa0632240 | MtrunA17_Chr2g0291021 | 55.556 | 54 | 23 | 1 | 170 | 222 | 49 | 102 | 1.05e-11 | 64.7 |
| Msa0632240 | MtrunA17_Chr7g0274471 | 40.659 | 91 | 51 | 3 | 170 | 258 | 218 | 307 | 1.20e-11 | 65.1 |
| Msa0632240 | MtrunA17_Chr7g0255711 | 48.276 | 58 | 30 | 0 | 169 | 226 | 90 | 147 | 1.24e-11 | 64.3 |
| Msa0632240 | MtrunA17_Chr4g0054981 | 48.148 | 54 | 28 | 0 | 169 | 222 | 309 | 362 | 1.42e-11 | 65.1 |
| Msa0632240 | MtrunA17_Chr7g0242521 | 50.000 | 70 | 26 | 3 | 157 | 222 | 5 | 69 | 2.24e-11 | 62.8 |
| Msa0632240 | MtrunA17_Chr4g0031961 | 41.250 | 80 | 45 | 2 | 147 | 226 | 110 | 187 | 2.44e-11 | 63.5 |
| Msa0632240 | MtrunA17_Chr1g0198601 | 45.122 | 82 | 35 | 3 | 151 | 229 | 199 | 273 | 2.67e-11 | 63.9 |
| Msa0632240 | MtrunA17_Chr1g0190301 | 47.059 | 68 | 34 | 2 | 166 | 231 | 171 | 238 | 5.28e-11 | 63.2 |
| Msa0632240 | MtrunA17_Chr7g0258551 | 47.368 | 57 | 29 | 1 | 167 | 222 | 209 | 265 | 6.21e-11 | 62.8 |
| Msa0632240 | MtrunA17_Chr1g0175091 | 42.647 | 68 | 36 | 2 | 156 | 222 | 246 | 311 | 8.19e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632240 | AT2G01760.1 | 39.163 | 263 | 119 | 6 | 7 | 232 | 4 | 262 | 8.98e-56 | 186 |
| Msa0632240 | AT1G67710.1 | 40.449 | 267 | 123 | 8 | 11 | 243 | 8 | 272 | 1.94e-53 | 183 |
| Msa0632240 | AT3G16857.1 | 36.688 | 308 | 137 | 11 | 10 | 259 | 33 | 340 | 7.62e-51 | 178 |
| Msa0632240 | AT3G16857.2 | 36.039 | 308 | 139 | 9 | 10 | 259 | 33 | 340 | 1.02e-50 | 178 |
| Msa0632240 | AT2G01760.2 | 35.395 | 291 | 119 | 7 | 7 | 232 | 4 | 290 | 7.10e-50 | 171 |
| Msa0632240 | AT4G31920.1 | 36.910 | 233 | 137 | 2 | 10 | 232 | 13 | 245 | 4.45e-46 | 164 |
| Msa0632240 | AT2G25180.1 | 38.750 | 240 | 123 | 6 | 10 | 226 | 13 | 251 | 1.24e-43 | 157 |
| Msa0632240 | AT3G16857.3 | 34.944 | 269 | 117 | 9 | 49 | 259 | 2 | 270 | 5.14e-40 | 148 |
| Msa0632240 | AT5G58080.1 | 36.863 | 255 | 125 | 7 | 10 | 236 | 14 | 260 | 4.07e-39 | 145 |
| Msa0632240 | AT1G67710.2 | 40.670 | 209 | 89 | 7 | 68 | 243 | 1 | 207 | 8.12e-36 | 134 |
| Msa0632240 | AT2G01760.3 | 36.816 | 201 | 87 | 5 | 68 | 232 | 1 | 197 | 1.05e-35 | 131 |
| Msa0632240 | AT5G49240.1 | 31.356 | 236 | 137 | 5 | 9 | 219 | 37 | 272 | 2.81e-34 | 127 |
| Msa0632240 | AT3G62670.1 | 29.520 | 271 | 161 | 9 | 28 | 272 | 53 | 319 | 6.11e-31 | 120 |
| Msa0632240 | AT1G49190.1 | 28.125 | 256 | 153 | 6 | 10 | 234 | 30 | 285 | 1.52e-28 | 114 |
| Msa0632240 | AT1G67710.3 | 39.153 | 189 | 80 | 7 | 88 | 243 | 12 | 198 | 8.05e-27 | 109 |
| Msa0632240 | AT5G07210.2 | 27.778 | 270 | 141 | 7 | 14 | 231 | 16 | 283 | 4.38e-25 | 105 |
| Msa0632240 | AT5G07210.1 | 26.978 | 278 | 141 | 8 | 14 | 231 | 16 | 291 | 1.46e-22 | 98.6 |
| Msa0632240 | AT2G27070.1 | 24.621 | 264 | 142 | 7 | 14 | 222 | 16 | 277 | 1.45e-19 | 89.4 |
| Msa0632240 | AT1G49190.2 | 32.258 | 124 | 83 | 1 | 10 | 132 | 30 | 153 | 1.82e-17 | 83.2 |
| Msa0632240 | AT5G29000.4 | 40.566 | 106 | 54 | 4 | 132 | 235 | 200 | 298 | 8.02e-16 | 77.0 |
| Msa0632240 | AT5G29000.2 | 38.793 | 116 | 62 | 4 | 132 | 245 | 200 | 308 | 8.65e-16 | 77.8 |
| Msa0632240 | AT5G29000.1 | 38.793 | 116 | 62 | 4 | 132 | 245 | 157 | 265 | 9.46e-16 | 77.4 |
| Msa0632240 | AT5G29000.3 | 38.793 | 116 | 62 | 4 | 132 | 245 | 157 | 265 | 9.46e-16 | 77.4 |
| Msa0632240 | AT2G01060.1 | 46.988 | 83 | 41 | 2 | 159 | 238 | 4 | 86 | 1.31e-13 | 70.5 |
| Msa0632240 | AT5G44190.1 | 48.333 | 60 | 31 | 0 | 167 | 226 | 144 | 203 | 1.32e-13 | 71.2 |
| Msa0632240 | AT5G44190.2 | 48.333 | 60 | 31 | 0 | 167 | 226 | 144 | 203 | 1.45e-13 | 70.9 |
| Msa0632240 | AT4G28610.1 | 45.361 | 97 | 45 | 5 | 160 | 252 | 217 | 309 | 3.00e-13 | 70.1 |
| Msa0632240 | AT3G04030.1 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 3.73e-13 | 69.7 |
| Msa0632240 | AT3G04030.3 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 4.26e-13 | 69.7 |
| Msa0632240 | AT5G18240.2 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 7.67e-13 | 68.9 |
| Msa0632240 | AT5G18240.3 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 7.67e-13 | 68.9 |
| Msa0632240 | AT5G18240.1 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 8.42e-13 | 68.9 |
| Msa0632240 | AT5G18240.4 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 8.42e-13 | 68.9 |
| Msa0632240 | AT5G18240.5 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 8.76e-13 | 68.9 |
| Msa0632240 | AT5G59570.2 | 42.105 | 76 | 41 | 1 | 151 | 226 | 125 | 197 | 1.36e-12 | 67.4 |
| Msa0632240 | AT5G59570.1 | 42.105 | 76 | 41 | 1 | 151 | 226 | 125 | 197 | 1.36e-12 | 67.4 |
| Msa0632240 | AT3G04450.3 | 38.298 | 94 | 51 | 3 | 136 | 222 | 198 | 291 | 1.67e-12 | 67.4 |
| Msa0632240 | AT3G46640.3 | 43.210 | 81 | 43 | 2 | 146 | 226 | 123 | 200 | 2.41e-12 | 67.0 |
| Msa0632240 | AT2G20570.1 | 45.312 | 64 | 35 | 0 | 163 | 226 | 146 | 209 | 2.46e-12 | 67.4 |
| Msa0632240 | AT3G04030.2 | 52.830 | 53 | 25 | 0 | 170 | 222 | 45 | 97 | 2.48e-12 | 67.4 |
| Msa0632240 | AT3G46640.2 | 43.210 | 81 | 43 | 2 | 146 | 226 | 123 | 200 | 2.66e-12 | 67.0 |
| Msa0632240 | AT3G46640.1 | 43.210 | 81 | 43 | 2 | 146 | 226 | 123 | 200 | 2.66e-12 | 67.0 |
| Msa0632240 | AT3G04450.1 | 48.276 | 58 | 29 | 1 | 166 | 222 | 234 | 291 | 3.59e-12 | 67.0 |
| Msa0632240 | AT3G04450.4 | 48.276 | 58 | 29 | 1 | 166 | 222 | 194 | 251 | 4.42e-12 | 66.6 |
| Msa0632240 | AT3G04450.2 | 48.276 | 58 | 29 | 1 | 166 | 222 | 194 | 251 | 4.42e-12 | 66.6 |
| Msa0632240 | AT5G05090.1 | 42.697 | 89 | 39 | 3 | 138 | 226 | 61 | 137 | 6.36e-12 | 65.1 |
| Msa0632240 | AT1G69580.1 | 51.852 | 54 | 25 | 1 | 170 | 222 | 34 | 87 | 6.46e-12 | 65.9 |
| Msa0632240 | AT1G69580.2 | 51.852 | 54 | 25 | 1 | 170 | 222 | 34 | 87 | 6.86e-12 | 65.9 |
| Msa0632240 | AT2G40970.1 | 46.552 | 58 | 31 | 0 | 169 | 226 | 104 | 161 | 1.08e-11 | 64.3 |
| Msa0632240 | AT3G10760.1 | 48.276 | 58 | 30 | 0 | 169 | 226 | 104 | 161 | 1.27e-11 | 65.1 |
| Msa0632240 | AT4G18020.8 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 3.65e-11 | 64.3 |
| Msa0632240 | AT4G18020.11 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 3.65e-11 | 64.3 |
| Msa0632240 | AT4G18020.4 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 3.65e-11 | 64.3 |
| Msa0632240 | AT4G18020.5 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 3.65e-11 | 64.3 |
| Msa0632240 | AT4G18020.10 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 3.65e-11 | 64.3 |
| Msa0632240 | AT4G18020.7 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 3.65e-11 | 64.3 |
| Msa0632240 | AT4G18020.3 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 3.74e-11 | 64.3 |
| Msa0632240 | AT4G18020.2 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 3.74e-11 | 64.3 |
| Msa0632240 | AT4G18020.1 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 3.74e-11 | 64.3 |
| Msa0632240 | AT4G18020.6 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 3.74e-11 | 64.3 |
| Msa0632240 | AT4G18020.9 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 3.74e-11 | 64.3 |
| Msa0632240 | AT2G20570.2 | 47.273 | 55 | 29 | 0 | 172 | 226 | 171 | 225 | 4.80e-11 | 63.5 |
| Msa0632240 | AT3G24120.1 | 48.529 | 68 | 31 | 2 | 170 | 233 | 41 | 108 | 6.52e-11 | 62.4 |
| Msa0632240 | AT3G24120.2 | 48.529 | 68 | 31 | 2 | 170 | 233 | 41 | 108 | 6.53e-11 | 62.8 |
| Msa0632240 | AT4G04605.1 | 46.970 | 66 | 33 | 2 | 168 | 231 | 12 | 77 | 9.92e-11 | 61.2 |
Find 62 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGTGTCGCAGAATTC+AGG | 0.268438 | 4_3:+16005526 | None:intergenic |
| ACATATTGCCAGCCATTTAC+AGG | 0.282271 | 4_3:-16006032 | Msa0632240:intron |
| TTCAGTTACCAAATGTAGTA+TGG | 0.293347 | 4_3:-16006757 | Msa0632240:intron |
| CTTTGCAAGTGTTTCATTTG+AGG | 0.324052 | 4_3:+16006273 | None:intergenic |
| CAACGACATTGGGTGGAAAT+TGG | 0.345706 | 4_3:-16005486 | Msa0632240:CDS |
| TGAGTTGTAGGGTAACATTT+TGG | 0.376494 | 4_3:+16006640 | None:intergenic |
| GATAAATCATCATTAACATA+TGG | 0.380393 | 4_3:+16005414 | None:intergenic |
| AATGTGGGGCTTGCGAATAT+TGG | 0.385194 | 4_3:-16006444 | Msa0632240:CDS |
| CGAATATTGGACTAAGCCTT+TGG | 0.392176 | 4_3:-16006431 | Msa0632240:CDS |
| TGACAGGAATGTTGAGTTGT+AGG | 0.408636 | 4_3:+16006628 | None:intergenic |
| ATCAGAAGCCATACTACATT+TGG | 0.409595 | 4_3:+16006749 | None:intergenic |
| AATAAAGAATATGAAATTGT+TGG | 0.416766 | 4_3:-16006346 | Msa0632240:CDS |
| CTTTCTTTCCAACATGTTGA+AGG | 0.419409 | 4_3:+16006725 | None:intergenic |
| CAAAGAAGGCCCGTTTGTCT+TGG | 0.435563 | 4_3:-16006255 | Msa0632240:CDS |
| GGTTCAAGAAAATAGAAAAC+GGG | 0.441425 | 4_3:-16006314 | Msa0632240:CDS |
| GCAATAACCTCGAGACCGGC+TGG | 0.445702 | 4_3:+16006944 | None:intergenic |
| TTGCGATGCACAACGACATT+GGG | 0.452490 | 4_3:-16005496 | Msa0632240:CDS |
| TCGAGACCGGCTGGGAATGA+TGG | 0.453544 | 4_3:+16006953 | None:intergenic |
| AAATGAAACACTTGCAAAGA+AGG | 0.458333 | 4_3:-16006269 | Msa0632240:CDS |
| CTTCAACATGTTGGAAAGAA+AGG | 0.459586 | 4_3:-16006724 | Msa0632240:CDS |
| AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4_3:+16006612 | None:intergenic |
| TGATGGGTTATCAGTGAAAC+GGG | 0.468852 | 4_3:+16006970 | None:intergenic |
| TTAACATATGGGAACAAGTT+GGG | 0.470604 | 4_3:+16005426 | None:intergenic |
| TTCTCGTGACCAAGACAAAC+GGG | 0.471359 | 4_3:+16006246 | None:intergenic |
| TACTCACTCAATGCCGGAGC+AGG | 0.473606 | 4_3:-16005562 | Msa0632240:CDS |
| TCTTGAAACAAAATTTGACT+TGG | 0.483204 | 4_3:-16005589 | Msa0632240:CDS |
| AAAAGTGTTGCTCATAATGT+TGG | 0.490442 | 4_3:+16005458 | None:intergenic |
| AAGTCATAAACATCCATGTC+TGG | 0.491105 | 4_3:+16006666 | None:intergenic |
| CACTTTCCTCAACTCTATTG+AGG | 0.492388 | 4_3:-16006906 | Msa0632240:CDS |
| CATGTTGCAAGAATTAGAAA+AGG | 0.495389 | 4_3:-16006379 | Msa0632240:CDS |
| TGGTTCAAGAAAATAGAAAA+CGG | 0.501089 | 4_3:-16006315 | Msa0632240:CDS |
| AGGAAAGAATCATACTATCA+AGG | 0.510494 | 4_3:+16006185 | None:intergenic |
| ATATGAAATTGTTGGAAGCT+CGG | 0.515274 | 4_3:-16006338 | Msa0632240:CDS |
| ATTGCGATGCACAACGACAT+TGG | 0.516098 | 4_3:-16005497 | Msa0632240:CDS |
| ATGATGGGTTATCAGTGAAA+CGG | 0.516952 | 4_3:+16006969 | None:intergenic |
| TGTAATCGATATCATTATCA+AGG | 0.517908 | 4_3:-16006878 | Msa0632240:intron |
| GACAGGAATGTTGAGTTGTA+GGG | 0.519779 | 4_3:+16006629 | None:intergenic |
| ATCATGAAGTCTATTGAATG+TGG | 0.526495 | 4_3:-16006460 | Msa0632240:CDS |
| ATAAATCATCATTAACATAT+GGG | 0.527171 | 4_3:+16005415 | None:intergenic |
| AAAATGAACCTGTAAATGGC+TGG | 0.527802 | 4_3:+16006024 | None:intergenic |
| TTCTGATGCCTTCAACATGT+TGG | 0.527887 | 4_3:-16006733 | Msa0632240:CDS |
| GTTCTCGTGACCAAGACAAA+CGG | 0.530308 | 4_3:+16006245 | None:intergenic |
| CGAGACCGGCTGGGAATGAT+GGG | 0.533761 | 4_3:+16006954 | None:intergenic |
| ATTAACATATGGGAACAAGT+TGG | 0.538808 | 4_3:+16005425 | None:intergenic |
| CTACGTGCAGTCAATCAACT+AGG | 0.547867 | 4_3:-16006208 | Msa0632240:CDS |
| AGCTCAACAGAAGAGACAAA+AGG | 0.548661 | 4_3:-16005639 | Msa0632240:CDS |
| AGAAAACTCTGGTCCTGCTC+CGG | 0.548712 | 4_3:+16005549 | None:intergenic |
| TCATGAAGTCTATTGAATGT+GGG | 0.549366 | 4_3:-16006459 | Msa0632240:CDS |
| AATTGCAATAACCTCGAGAC+CGG | 0.556151 | 4_3:+16006940 | None:intergenic |
| CGATGCACAACGACATTGGG+TGG | 0.580466 | 4_3:-16005493 | Msa0632240:CDS |
| GGAAGCTACTCACTCAATGC+CGG | 0.591913 | 4_3:-16005568 | Msa0632240:CDS |
| ATCATTCCCAGCCGGTCTCG+AGG | 0.599280 | 4_3:-16006951 | Msa0632240:CDS |
| CAATAACCTCGAGACCGGCT+GGG | 0.602751 | 4_3:+16006945 | None:intergenic |
| CAGAATTCAGGAGAAAACTC+TGG | 0.602905 | 4_3:+16005538 | None:intergenic |
| CATGAAGTCTATTGAATGTG+GGG | 0.606058 | 4_3:-16006458 | Msa0632240:CDS |
| CAACAGAAGAGACAAAAGGT+AGG | 0.617016 | 4_3:-16005635 | Msa0632240:CDS |
| ACATCTCCTCAATAGAGTTG+AGG | 0.625514 | 4_3:+16006900 | None:intergenic |
| TGATGCTCATATGCCAGACA+TGG | 0.629107 | 4_3:-16006679 | Msa0632240:CDS |
| GATAACCCATCATTCCCAGC+CGG | 0.638659 | 4_3:-16006959 | Msa0632240:CDS |
| ATGATTTATCATCACTTGTG+TGG | 0.642369 | 4_3:-16005401 | Msa0632240:CDS |
| TGAAATTGTTGGAAGCTCGG+TGG | 0.670504 | 4_3:-16006335 | Msa0632240:CDS |
| GTTCAAGAAAATAGAAAACG+GGG | 0.742093 | 4_3:-16006313 | Msa0632240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAGAATATGAAATTGT+TGG | - | chr4_3:16006026-16006045 | Msa0632240:intron | 15.0% |
| !!! | AATATGTTCTTTTTTCATAT+CGG | + | chr4_3:16006327-16006346 | None:intergenic | 15.0% |
| !! | ATAAATCATCATTAACATAT+GGG | + | chr4_3:16006960-16006979 | None:intergenic | 15.0% |
| !! | AATAAAGAATATGAAATTGT+TGG | - | chr4_3:16006026-16006045 | Msa0632240:intron | 15.0% |
| !!! | AATATGTTCTTTTTTCATAT+CGG | + | chr4_3:16006327-16006346 | None:intergenic | 15.0% |
| !! | ATAAATCATCATTAACATAT+GGG | + | chr4_3:16006960-16006979 | None:intergenic | 15.0% |
| !! | AAAAGATGAAAACTTGAATA+AGG | + | chr4_3:16005537-16005556 | None:intergenic | 20.0% |
| !!! | ATTCAAGTTTTCATCTTTTT+TGG | - | chr4_3:16005538-16005557 | Msa0632240:CDS | 20.0% |
| !! | CAATATAAGAATAAACAAAC+AGG | + | chr4_3:16005590-16005609 | None:intergenic | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | + | chr4_3:16005763-16005782 | None:intergenic | 20.0% |
| !!! | ATATTTCTTTTTTGTAGTGA+TGG | - | chr4_3:16005866-16005885 | Msa0632240:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | + | chr4_3:16006210-16006229 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTAATTTTC+AGG | - | chr4_3:16006263-16006282 | Msa0632240:CDS | 20.0% |
| !!! | TGTTTTTCTCTTAATTTTCA+GGG | - | chr4_3:16006264-16006283 | Msa0632240:CDS | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | + | chr4_3:16006296-16006315 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | - | chr4_3:16006295-16006314 | Msa0632240:CDS | 20.0% |
| !!! | ATATGTTCTTTTTTCATATC+GGG | + | chr4_3:16006326-16006345 | None:intergenic | 20.0% |
| !!! | TGATTTTAAACTGAAATTTG+TGG | - | chr4_3:16006648-16006667 | Msa0632240:CDS | 20.0% |
| !!! | TTTTGCAGAAATATAGAAAT+CGG | - | chr4_3:16006704-16006723 | Msa0632240:CDS | 20.0% |
| !! | GATAAATCATCATTAACATA+TGG | + | chr4_3:16006961-16006980 | None:intergenic | 20.0% |
| !! | AAAAGATGAAAACTTGAATA+AGG | + | chr4_3:16005537-16005556 | None:intergenic | 20.0% |
| !!! | ATTCAAGTTTTCATCTTTTT+TGG | - | chr4_3:16005538-16005557 | Msa0632240:CDS | 20.0% |
| !! | CAATATAAGAATAAACAAAC+AGG | + | chr4_3:16005590-16005609 | None:intergenic | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | + | chr4_3:16005763-16005782 | None:intergenic | 20.0% |
| !!! | ATATTTCTTTTTTGTAGTGA+TGG | - | chr4_3:16005866-16005885 | Msa0632240:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | + | chr4_3:16006210-16006229 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTAATTTTC+AGG | - | chr4_3:16006263-16006282 | Msa0632240:CDS | 20.0% |
| !!! | TGTTTTTCTCTTAATTTTCA+GGG | - | chr4_3:16006264-16006283 | Msa0632240:CDS | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | + | chr4_3:16006296-16006315 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | - | chr4_3:16006295-16006314 | Msa0632240:CDS | 20.0% |
| !!! | ATATGTTCTTTTTTCATATC+GGG | + | chr4_3:16006326-16006345 | None:intergenic | 20.0% |
| !!! | TGATTTTAAACTGAAATTTG+TGG | - | chr4_3:16006648-16006667 | Msa0632240:CDS | 20.0% |
| !!! | TTTTGCAGAAATATAGAAAT+CGG | - | chr4_3:16006704-16006723 | Msa0632240:CDS | 20.0% |
| !! | GATAAATCATCATTAACATA+TGG | + | chr4_3:16006961-16006980 | None:intergenic | 20.0% |
| ! | TGTAATCGATATCATTATCA+AGG | - | chr4_3:16005494-16005513 | Msa0632240:CDS | 25.0% |
| ! | TGGTTCAAGAAAATAGAAAA+CGG | - | chr4_3:16006057-16006076 | Msa0632240:CDS | 25.0% |
| !! | GTTTTTCTCTTAATTTTCAG+GGG | - | chr4_3:16006265-16006284 | Msa0632240:CDS | 25.0% |
| ! | TACAAAAATGAACCTGTAAA+TGG | + | chr4_3:16006355-16006374 | None:intergenic | 25.0% |
| ! | AAAAGATAACTTACAAACCT+AGG | + | chr4_3:16006431-16006450 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | + | chr4_3:16006617-16006636 | None:intergenic | 25.0% |
| !!! | AAGTCAAATTTTGTTTCAAG+AGG | + | chr4_3:16006784-16006803 | None:intergenic | 25.0% |
| ! | TCTTGAAACAAAATTTGACT+TGG | - | chr4_3:16006783-16006802 | Msa0632240:intron | 25.0% |
| ! | TGTAATCGATATCATTATCA+AGG | - | chr4_3:16005494-16005513 | Msa0632240:CDS | 25.0% |
| ! | TGGTTCAAGAAAATAGAAAA+CGG | - | chr4_3:16006057-16006076 | Msa0632240:CDS | 25.0% |
| !! | GTTTTTCTCTTAATTTTCAG+GGG | - | chr4_3:16006265-16006284 | Msa0632240:CDS | 25.0% |
| ! | TACAAAAATGAACCTGTAAA+TGG | + | chr4_3:16006355-16006374 | None:intergenic | 25.0% |
| ! | AAAAGATAACTTACAAACCT+AGG | + | chr4_3:16006431-16006450 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | + | chr4_3:16006617-16006636 | None:intergenic | 25.0% |
| !!! | AAGTCAAATTTTGTTTCAAG+AGG | + | chr4_3:16006784-16006803 | None:intergenic | 25.0% |
| ! | TCTTGAAACAAAATTTGACT+TGG | - | chr4_3:16006783-16006802 | Msa0632240:intron | 25.0% |
| TTCAGTTACCAAATGTAGTA+TGG | - | chr4_3:16005615-16005634 | Msa0632240:CDS | 30.0% | |
| ! | CTTCATGATAGAACTTTTTG+TGG | + | chr4_3:16005901-16005920 | None:intergenic | 30.0% |
| ATCATGAAGTCTATTGAATG+TGG | - | chr4_3:16005912-16005931 | Msa0632240:intron | 30.0% | |
| TCATGAAGTCTATTGAATGT+GGG | - | chr4_3:16005913-16005932 | Msa0632240:intron | 30.0% | |
| CATGTTGCAAGAATTAGAAA+AGG | - | chr4_3:16005993-16006012 | Msa0632240:intron | 30.0% | |
| ATATGAAATTGTTGGAAGCT+CGG | - | chr4_3:16006034-16006053 | Msa0632240:CDS | 30.0% | |
| GGTTCAAGAAAATAGAAAAC+GGG | - | chr4_3:16006058-16006077 | Msa0632240:CDS | 30.0% | |
| GTTCAAGAAAATAGAAAACG+GGG | - | chr4_3:16006059-16006078 | Msa0632240:CDS | 30.0% | |
| AAATGAAACACTTGCAAAGA+AGG | - | chr4_3:16006103-16006122 | Msa0632240:intron | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | + | chr4_3:16006190-16006209 | None:intergenic | 30.0% | |
| TGATTTACAACAACAGACTT+AGG | + | chr4_3:16006455-16006474 | None:intergenic | 30.0% | |
| TTGAATAACATGCAAGACTA+AGG | + | chr4_3:16006493-16006512 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | + | chr4_3:16006917-16006936 | None:intergenic | 30.0% |
| TTAACATATGGGAACAAGTT+GGG | + | chr4_3:16006949-16006968 | None:intergenic | 30.0% | |
| ATTAACATATGGGAACAAGT+TGG | + | chr4_3:16006950-16006969 | None:intergenic | 30.0% | |
| ATGATTTATCATCACTTGTG+TGG | - | chr4_3:16006971-16006990 | Msa0632240:CDS | 30.0% | |
| TTCAGTTACCAAATGTAGTA+TGG | - | chr4_3:16005615-16005634 | Msa0632240:CDS | 30.0% | |
| ! | CTTCATGATAGAACTTTTTG+TGG | + | chr4_3:16005901-16005920 | None:intergenic | 30.0% |
| ATCATGAAGTCTATTGAATG+TGG | - | chr4_3:16005912-16005931 | Msa0632240:intron | 30.0% | |
| TCATGAAGTCTATTGAATGT+GGG | - | chr4_3:16005913-16005932 | Msa0632240:intron | 30.0% | |
| CATGTTGCAAGAATTAGAAA+AGG | - | chr4_3:16005993-16006012 | Msa0632240:intron | 30.0% | |
| ATATGAAATTGTTGGAAGCT+CGG | - | chr4_3:16006034-16006053 | Msa0632240:CDS | 30.0% | |
| GGTTCAAGAAAATAGAAAAC+GGG | - | chr4_3:16006058-16006077 | Msa0632240:CDS | 30.0% | |
| GTTCAAGAAAATAGAAAACG+GGG | - | chr4_3:16006059-16006078 | Msa0632240:CDS | 30.0% | |
| AAATGAAACACTTGCAAAGA+AGG | - | chr4_3:16006103-16006122 | Msa0632240:intron | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | + | chr4_3:16006190-16006209 | None:intergenic | 30.0% | |
| TGATTTACAACAACAGACTT+AGG | + | chr4_3:16006455-16006474 | None:intergenic | 30.0% | |
| TTGAATAACATGCAAGACTA+AGG | + | chr4_3:16006493-16006512 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | + | chr4_3:16006917-16006936 | None:intergenic | 30.0% |
| TTAACATATGGGAACAAGTT+GGG | + | chr4_3:16006949-16006968 | None:intergenic | 30.0% | |
| ATTAACATATGGGAACAAGT+TGG | + | chr4_3:16006950-16006969 | None:intergenic | 30.0% | |
| ATGATTTATCATCACTTGTG+TGG | - | chr4_3:16006971-16006990 | Msa0632240:CDS | 30.0% | |
| !! | ATGATGGGTTATCAGTGAAA+CGG | + | chr4_3:16005406-16005425 | None:intergenic | 35.0% |
| ATCAGAAGCCATACTACATT+TGG | + | chr4_3:16005626-16005645 | None:intergenic | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | + | chr4_3:16005650-16005669 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | - | chr4_3:16005648-16005667 | Msa0632240:CDS | 35.0% | |
| AAGTCATAAACATCCATGTC+TGG | + | chr4_3:16005709-16005728 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | + | chr4_3:16005735-16005754 | None:intergenic | 35.0% |
| CATGAAGTCTATTGAATGTG+GGG | - | chr4_3:16005914-16005933 | Msa0632240:intron | 35.0% | |
| TAAGCCTTTGGTTGAAAAAG+AGG | - | chr4_3:16005953-16005972 | Msa0632240:intron | 35.0% | |
| !!! | TTGACCTCTTTTTCAACCAA+AGG | + | chr4_3:16005960-16005979 | None:intergenic | 35.0% |
| AAAAAGAGGTCAAGATCATG+TGG | - | chr4_3:16005967-16005986 | Msa0632240:intron | 35.0% | |
| CTTTGCAAGTGTTTCATTTG+AGG | + | chr4_3:16006102-16006121 | None:intergenic | 35.0% | |
| AAAATGAACCTGTAAATGGC+TGG | + | chr4_3:16006351-16006370 | None:intergenic | 35.0% | |
| AGTAGTGAATTATGCAGTCA+TGG | - | chr4_3:16006529-16006548 | Msa0632240:intron | 35.0% | |
| AGAGGATGTATAGAAGCTAA+TGG | + | chr4_3:16006599-16006618 | None:intergenic | 35.0% | |
| !! | ATGATGGGTTATCAGTGAAA+CGG | + | chr4_3:16005406-16005425 | None:intergenic | 35.0% |
| ATCAGAAGCCATACTACATT+TGG | + | chr4_3:16005626-16005645 | None:intergenic | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | + | chr4_3:16005650-16005669 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | - | chr4_3:16005648-16005667 | Msa0632240:CDS | 35.0% | |
| AAGTCATAAACATCCATGTC+TGG | + | chr4_3:16005709-16005728 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | + | chr4_3:16005735-16005754 | None:intergenic | 35.0% |
| CATGAAGTCTATTGAATGTG+GGG | - | chr4_3:16005914-16005933 | Msa0632240:intron | 35.0% | |
| TAAGCCTTTGGTTGAAAAAG+AGG | - | chr4_3:16005953-16005972 | Msa0632240:intron | 35.0% | |
| !!! | TTGACCTCTTTTTCAACCAA+AGG | + | chr4_3:16005960-16005979 | None:intergenic | 35.0% |
| AAAAAGAGGTCAAGATCATG+TGG | - | chr4_3:16005967-16005986 | Msa0632240:intron | 35.0% | |
| CTTTGCAAGTGTTTCATTTG+AGG | + | chr4_3:16006102-16006121 | None:intergenic | 35.0% | |
| AAAATGAACCTGTAAATGGC+TGG | + | chr4_3:16006351-16006370 | None:intergenic | 35.0% | |
| AGTAGTGAATTATGCAGTCA+TGG | - | chr4_3:16006529-16006548 | Msa0632240:intron | 35.0% | |
| AGAGGATGTATAGAAGCTAA+TGG | + | chr4_3:16006599-16006618 | None:intergenic | 35.0% | |
| !! | TGATGGGTTATCAGTGAAAC+GGG | + | chr4_3:16005405-16005424 | None:intergenic | 40.0% |
| AATTGCAATAACCTCGAGAC+CGG | + | chr4_3:16005435-16005454 | None:intergenic | 40.0% | |
| CACTTTCCTCAACTCTATTG+AGG | - | chr4_3:16005466-16005485 | Msa0632240:CDS | 40.0% | |
| ACATCTCCTCAATAGAGTTG+AGG | + | chr4_3:16005475-16005494 | None:intergenic | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | - | chr4_3:16005639-16005658 | Msa0632240:CDS | 40.0% | |
| ! | GACAGGAATGTTGAGTTGTA+GGG | + | chr4_3:16005746-16005765 | None:intergenic | 40.0% |
| ! | TGACAGGAATGTTGAGTTGT+AGG | + | chr4_3:16005747-16005766 | None:intergenic | 40.0% |
| CGAATATTGGACTAAGCCTT+TGG | - | chr4_3:16005941-16005960 | Msa0632240:intron | 40.0% | |
| ACATATTGCCAGCCATTTAC+AGG | - | chr4_3:16006340-16006359 | Msa0632240:CDS | 40.0% | |
| AGCTCAACAGAAGAGACAAA+AGG | - | chr4_3:16006733-16006752 | Msa0632240:CDS | 40.0% | |
| CAACAGAAGAGACAAAAGGT+AGG | - | chr4_3:16006737-16006756 | Msa0632240:CDS | 40.0% | |
| CAGAATTCAGGAGAAAACTC+TGG | + | chr4_3:16006837-16006856 | None:intergenic | 40.0% | |
| !! | TGATGGGTTATCAGTGAAAC+GGG | + | chr4_3:16005405-16005424 | None:intergenic | 40.0% |
| AATTGCAATAACCTCGAGAC+CGG | + | chr4_3:16005435-16005454 | None:intergenic | 40.0% | |
| CACTTTCCTCAACTCTATTG+AGG | - | chr4_3:16005466-16005485 | Msa0632240:CDS | 40.0% | |
| ACATCTCCTCAATAGAGTTG+AGG | + | chr4_3:16005475-16005494 | None:intergenic | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | - | chr4_3:16005639-16005658 | Msa0632240:CDS | 40.0% | |
| ! | GACAGGAATGTTGAGTTGTA+GGG | + | chr4_3:16005746-16005765 | None:intergenic | 40.0% |
| ! | TGACAGGAATGTTGAGTTGT+AGG | + | chr4_3:16005747-16005766 | None:intergenic | 40.0% |
| CGAATATTGGACTAAGCCTT+TGG | - | chr4_3:16005941-16005960 | Msa0632240:intron | 40.0% | |
| ACATATTGCCAGCCATTTAC+AGG | - | chr4_3:16006340-16006359 | Msa0632240:CDS | 40.0% | |
| AGCTCAACAGAAGAGACAAA+AGG | - | chr4_3:16006733-16006752 | Msa0632240:CDS | 40.0% | |
| CAACAGAAGAGACAAAAGGT+AGG | - | chr4_3:16006737-16006756 | Msa0632240:CDS | 40.0% | |
| CAGAATTCAGGAGAAAACTC+TGG | + | chr4_3:16006837-16006856 | None:intergenic | 40.0% | |
| TGATGCTCATATGCCAGACA+TGG | - | chr4_3:16005693-16005712 | Msa0632240:intron | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | - | chr4_3:16005928-16005947 | Msa0632240:intron | 45.0% | |
| TGAAATTGTTGGAAGCTCGG+TGG | - | chr4_3:16006037-16006056 | Msa0632240:CDS | 45.0% | |
| TTCTCGTGACCAAGACAAAC+GGG | + | chr4_3:16006129-16006148 | None:intergenic | 45.0% | |
| GTTCTCGTGACCAAGACAAA+CGG | + | chr4_3:16006130-16006149 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | - | chr4_3:16006164-16006183 | Msa0632240:intron | 45.0% | |
| ACCTGAGTCTATAGTTGCCT+AGG | - | chr4_3:16006411-16006430 | Msa0632240:CDS | 45.0% | |
| ACCTAGGCAACTATAGACTC+AGG | + | chr4_3:16006415-16006434 | None:intergenic | 45.0% | |
| GACATTGTGTCGCAGAATTC+AGG | + | chr4_3:16006849-16006868 | None:intergenic | 45.0% | |
| ATTGCGATGCACAACGACAT+TGG | - | chr4_3:16006875-16006894 | Msa0632240:intron | 45.0% | |
| TTGCGATGCACAACGACATT+GGG | - | chr4_3:16006876-16006895 | Msa0632240:intron | 45.0% | |
| CAACGACATTGGGTGGAAAT+TGG | - | chr4_3:16006886-16006905 | Msa0632240:CDS | 45.0% | |
| TGATGCTCATATGCCAGACA+TGG | - | chr4_3:16005693-16005712 | Msa0632240:intron | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | - | chr4_3:16005928-16005947 | Msa0632240:intron | 45.0% | |
| TGAAATTGTTGGAAGCTCGG+TGG | - | chr4_3:16006037-16006056 | Msa0632240:CDS | 45.0% | |
| TTCTCGTGACCAAGACAAAC+GGG | + | chr4_3:16006129-16006148 | None:intergenic | 45.0% | |
| GTTCTCGTGACCAAGACAAA+CGG | + | chr4_3:16006130-16006149 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | - | chr4_3:16006164-16006183 | Msa0632240:intron | 45.0% | |
| ACCTGAGTCTATAGTTGCCT+AGG | - | chr4_3:16006411-16006430 | Msa0632240:CDS | 45.0% | |
| ACCTAGGCAACTATAGACTC+AGG | + | chr4_3:16006415-16006434 | None:intergenic | 45.0% | |
| GACATTGTGTCGCAGAATTC+AGG | + | chr4_3:16006849-16006868 | None:intergenic | 45.0% | |
| ATTGCGATGCACAACGACAT+TGG | - | chr4_3:16006875-16006894 | Msa0632240:intron | 45.0% | |
| TTGCGATGCACAACGACATT+GGG | - | chr4_3:16006876-16006895 | Msa0632240:intron | 45.0% | |
| CAACGACATTGGGTGGAAAT+TGG | - | chr4_3:16006886-16006905 | Msa0632240:CDS | 45.0% | |
| GATAACCCATCATTCCCAGC+CGG | - | chr4_3:16005413-16005432 | Msa0632240:CDS | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | - | chr4_3:16006117-16006136 | Msa0632240:intron | 50.0% | |
| GGAAGCTACTCACTCAATGC+CGG | - | chr4_3:16006804-16006823 | Msa0632240:intron | 50.0% | |
| AGAAAACTCTGGTCCTGCTC+CGG | + | chr4_3:16006826-16006845 | None:intergenic | 50.0% | |
| GATAACCCATCATTCCCAGC+CGG | - | chr4_3:16005413-16005432 | Msa0632240:CDS | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | - | chr4_3:16006117-16006136 | Msa0632240:intron | 50.0% | |
| GGAAGCTACTCACTCAATGC+CGG | - | chr4_3:16006804-16006823 | Msa0632240:intron | 50.0% | |
| AGAAAACTCTGGTCCTGCTC+CGG | + | chr4_3:16006826-16006845 | None:intergenic | 50.0% | |
| CAATAACCTCGAGACCGGCT+GGG | + | chr4_3:16005430-16005449 | None:intergenic | 55.0% | |
| TACTCACTCAATGCCGGAGC+AGG | - | chr4_3:16006810-16006829 | Msa0632240:intron | 55.0% | |
| CGATGCACAACGACATTGGG+TGG | - | chr4_3:16006879-16006898 | Msa0632240:CDS | 55.0% | |
| CAATAACCTCGAGACCGGCT+GGG | + | chr4_3:16005430-16005449 | None:intergenic | 55.0% | |
| TACTCACTCAATGCCGGAGC+AGG | - | chr4_3:16006810-16006829 | Msa0632240:intron | 55.0% | |
| CGATGCACAACGACATTGGG+TGG | - | chr4_3:16006879-16006898 | Msa0632240:CDS | 55.0% | |
| CGAGACCGGCTGGGAATGAT+GGG | + | chr4_3:16005421-16005440 | None:intergenic | 60.0% | |
| TCGAGACCGGCTGGGAATGA+TGG | + | chr4_3:16005422-16005441 | None:intergenic | 60.0% | |
| ATCATTCCCAGCCGGTCTCG+AGG | - | chr4_3:16005421-16005440 | Msa0632240:CDS | 60.0% | |
| GCAATAACCTCGAGACCGGC+TGG | + | chr4_3:16005431-16005450 | None:intergenic | 60.0% | |
| CGAGACCGGCTGGGAATGAT+GGG | + | chr4_3:16005421-16005440 | None:intergenic | 60.0% | |
| TCGAGACCGGCTGGGAATGA+TGG | + | chr4_3:16005422-16005441 | None:intergenic | 60.0% | |
| ATCATTCCCAGCCGGTCTCG+AGG | - | chr4_3:16005421-16005440 | Msa0632240:CDS | 60.0% | |
| GCAATAACCTCGAGACCGGC+TGG | + | chr4_3:16005431-16005450 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 16005398 | 16006996 | 16005398 | ID=Msa0632240;Name=Msa0632240 |
| chr4_3 | mRNA | 16005398 | 16006996 | 16005398 | ID=Msa0632240-mRNA-1;Parent=Msa0632240;Name=Msa0632240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|5|0|313 |
| chr4_3 | exon | 16006879 | 16006996 | 16006879 | ID=Msa0632240-mRNA-1:exon:4552;Parent=Msa0632240-mRNA-1 |
| chr4_3 | exon | 16006625 | 16006774 | 16006625 | ID=Msa0632240-mRNA-1:exon:4551;Parent=Msa0632240-mRNA-1 |
| chr4_3 | exon | 16006200 | 16006511 | 16006200 | ID=Msa0632240-mRNA-1:exon:4550;Parent=Msa0632240-mRNA-1 |
| chr4_3 | exon | 16006033 | 16006109 | 16006033 | ID=Msa0632240-mRNA-1:exon:4549;Parent=Msa0632240-mRNA-1 |
| chr4_3 | exon | 16005398 | 16005682 | 16005398 | ID=Msa0632240-mRNA-1:exon:4548;Parent=Msa0632240-mRNA-1 |
| chr4_3 | CDS | 16006879 | 16006996 | 16006879 | ID=Msa0632240-mRNA-1:cds;Parent=Msa0632240-mRNA-1 |
| chr4_3 | CDS | 16006625 | 16006774 | 16006625 | ID=Msa0632240-mRNA-1:cds;Parent=Msa0632240-mRNA-1 |
| chr4_3 | CDS | 16006200 | 16006511 | 16006200 | ID=Msa0632240-mRNA-1:cds;Parent=Msa0632240-mRNA-1 |
| chr4_3 | CDS | 16006033 | 16006109 | 16006033 | ID=Msa0632240-mRNA-1:cds;Parent=Msa0632240-mRNA-1 |
| chr4_3 | CDS | 16005398 | 16005682 | 16005398 | ID=Msa0632240-mRNA-1:cds;Parent=Msa0632240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
