AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0632360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632360 MtrunA17_Chr4g0010151 96.721 366 9 3 1 365 1 364 0.0 711
Msa0632360 MtrunA17_Chr7g0237921 49.870 385 126 15 1 361 1 342 5.16e-87 266
Msa0632360 MtrunA17_Chr4g0031411 43.228 347 142 14 1 324 1 315 1.95e-65 210
Msa0632360 MtrunA17_Chr2g0328021 37.690 329 104 16 1 309 1 248 8.06e-48 163
Msa0632360 MtrunA17_Chr7g0223311 36.504 389 189 15 1 355 1 365 2.41e-47 164
Msa0632360 MtrunA17_Chr3g0127201 69.737 76 19 1 64 139 12 83 3.13e-32 122
Msa0632360 MtrunA17_Chr2g0326001 80.328 61 12 0 77 137 34 94 3.42e-31 119
Msa0632360 MtrunA17_Chr8g0346551 46.043 139 64 3 70 206 11 140 1.00e-30 117
Msa0632360 MtrunA17_Chr8g0374251 51.351 111 49 2 83 189 68 177 1.76e-30 119
Msa0632360 MtrunA17_Chr5g0411951 81.818 55 10 0 79 133 39 93 2.56e-29 115
Msa0632360 MtrunA17_Chr8g0341671 73.913 69 16 2 75 142 13 80 3.77e-29 112
Msa0632360 MtrunA17_Chr4g0030051 81.356 59 10 1 77 135 36 93 4.75e-29 114
Msa0632360 MtrunA17_Chr3g0126201 64.865 74 26 0 64 137 32 105 5.22e-29 114
Msa0632360 MtrunA17_Chr8g0367161 61.333 75 29 0 80 154 29 103 9.05e-29 114
Msa0632360 MtrunA17_Chr3g0117601 70.423 71 18 2 63 133 44 111 1.20e-28 114
Msa0632360 MtrunA17_Chr2g0282511 86.275 51 7 0 82 132 44 94 2.20e-28 112
Msa0632360 MtrunA17_Chr8g0374111 60.494 81 21 2 62 141 17 87 2.73e-28 110
Msa0632360 MtrunA17_Chr2g0308011 86.000 50 7 0 82 131 36 85 3.02e-27 107
Msa0632360 MtrunA17_Chr1g0177251 56.250 96 36 2 85 180 14 103 3.62e-27 108
Msa0632360 MtrunA17_Chr1g0188851 55.000 80 34 1 60 137 18 97 7.50e-27 108
Msa0632360 MtrunA17_Chr4g0061761 80.769 52 10 0 82 133 39 90 9.27e-27 108
Msa0632360 MtrunA17_Chr2g0282441 61.905 84 22 3 51 134 3 76 2.00e-26 107
Msa0632360 MtrunA17_Chr8g0355261 68.333 60 19 0 79 138 114 173 5.76e-26 108
Msa0632360 MtrunA17_Chr4g0047761 74.138 58 14 1 83 140 72 128 1.34e-25 105
Msa0632360 MtrunA17_Chr6g0453321 67.213 61 20 0 79 139 132 192 1.70e-25 107
Msa0632360 MtrunA17_Chr2g0282051 71.930 57 15 1 81 137 44 99 1.74e-25 103
Msa0632360 MtrunA17_Chr2g0283811 70.175 57 17 0 80 136 44 100 4.64e-25 99.8
Msa0632360 MtrunA17_Chr6g0460721 62.903 62 23 0 76 137 82 143 5.21e-25 103
Msa0632360 MtrunA17_Chr4g0042481 65.079 63 22 0 79 141 118 180 9.15e-25 105
Msa0632360 MtrunA17_Chr5g0417571 38.760 129 66 2 33 161 94 209 1.87e-24 102
Msa0632360 MtrunA17_Chr7g0217581 62.500 64 24 0 76 139 225 288 2.04e-24 104
Msa0632360 MtrunA17_Chr7g0254161 62.295 61 23 0 76 136 94 154 2.51e-24 103
Msa0632360 MtrunA17_Chr3g0092111 63.492 63 23 0 79 141 132 194 3.48e-24 103
Msa0632360 MtrunA17_Chr6g0460731 60.656 61 24 0 76 136 89 149 4.56e-24 101
Msa0632360 MtrunA17_Chr5g0417551 53.247 77 36 0 67 143 111 187 7.50e-23 98.6
Msa0632360 MtrunA17_Chr5g0417561 45.652 92 50 0 52 143 88 179 2.32e-22 97.1
Msa0632360 MtrunA17_Chr5g0417601 62.295 61 22 1 77 136 133 193 9.47e-22 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632360 AT3G55370.2 38.560 389 166 16 1 352 1 353 1.29e-57 191
Msa0632360 AT3G55370.1 43.986 291 113 12 1 277 1 255 2.40e-57 189
Msa0632360 AT3G55370.3 47.500 240 91 11 45 277 89 300 2.07e-50 173
Msa0632360 AT2G37590.1 41.896 327 151 9 1 310 1 305 5.20e-50 171
Msa0632360 AT5G02460.1 39.628 376 141 14 1 314 1 352 5.68e-47 164
Msa0632360 AT2G28810.1 34.771 371 175 17 1 344 1 331 9.42e-38 139
Msa0632360 AT1G07640.3 49.306 144 68 2 5 143 2 145 3.82e-37 137
Msa0632360 AT1G07640.2 55.833 120 43 2 28 143 24 137 1.26e-36 135
Msa0632360 AT5G60200.1 57.407 108 45 1 79 185 51 158 3.14e-36 132
Msa0632360 AT1G07640.1 70.886 79 23 0 65 143 3 81 3.38e-36 133
Msa0632360 AT2G28810.2 34.985 343 163 14 23 344 11 314 2.21e-35 132
Msa0632360 AT3G45610.1 53.846 104 47 1 79 182 36 138 7.93e-34 125
Msa0632360 AT1G51700.1 61.053 95 33 3 78 168 27 121 1.06e-31 119
Msa0632360 AT5G65590.1 42.614 176 66 5 44 195 8 172 1.76e-31 121
Msa0632360 AT1G28310.1 79.310 58 12 0 83 140 27 84 3.31e-30 117
Msa0632360 AT2G28510.1 81.967 61 11 0 82 142 47 107 3.50e-30 117
Msa0632360 AT1G28310.2 79.310 58 12 0 83 140 51 108 4.99e-30 118
Msa0632360 AT5G60850.1 71.014 69 20 0 70 138 38 106 1.77e-29 115
Msa0632360 AT3G61850.2 75.410 61 15 0 79 139 58 118 5.63e-29 114
Msa0632360 AT3G61850.3 75.410 61 15 0 79 139 58 118 5.63e-29 114
Msa0632360 AT3G61850.1 75.410 61 15 0 79 139 70 130 7.03e-29 114
Msa0632360 AT3G21270.1 84.906 53 8 0 83 135 29 81 7.57e-29 111
Msa0632360 AT3G61850.5 75.410 61 15 0 79 139 58 118 9.58e-29 114
Msa0632360 AT3G61850.4 75.410 61 15 0 79 139 70 130 1.09e-28 114
Msa0632360 AT4G38000.1 62.069 87 27 2 77 162 35 116 4.15e-28 110
Msa0632360 AT4G24060.1 73.770 61 16 0 77 137 47 107 5.72e-28 112
Msa0632360 AT3G52440.1 56.977 86 37 0 80 165 22 107 1.80e-27 108
Msa0632360 AT3G52440.2 56.977 86 37 0 80 165 41 126 2.89e-27 108
Msa0632360 AT1G21340.1 68.750 64 20 0 81 144 36 99 8.24e-27 107
Msa0632360 AT5G66940.1 51.685 89 32 2 64 141 2 90 1.02e-26 106
Msa0632360 AT5G62940.1 86.000 50 7 0 84 133 74 123 1.67e-26 108
Msa0632360 AT3G50410.1 69.492 59 18 0 83 141 30 88 2.79e-26 105
Msa0632360 AT4G00940.1 71.186 59 17 0 79 137 64 122 5.10e-26 106
Msa0632360 AT4G00940.3 71.186 59 17 0 79 137 64 122 5.10e-26 106
Msa0632360 AT4G00940.2 71.186 59 17 0 79 137 64 122 5.10e-26 106
Msa0632360 AT2G34140.1 56.962 79 31 1 58 136 36 111 7.22e-26 102
Msa0632360 AT2G46590.1 78.846 52 11 0 79 130 64 115 1.91e-25 105
Msa0632360 AT2G46590.2 78.846 52 11 0 79 130 76 127 2.25e-25 105
Msa0632360 AT4G21050.1 48.544 103 50 1 76 178 17 116 2.49e-25 102
Msa0632360 AT1G29160.1 68.966 58 18 0 79 136 58 115 5.19e-25 100
Msa0632360 AT3G47500.1 64.062 64 23 0 76 139 103 166 1.04e-24 105
Msa0632360 AT1G64620.1 74.545 55 14 0 77 131 43 97 1.24e-24 103
Msa0632360 AT1G26790.1 55.072 69 31 0 68 136 96 164 3.53e-24 102
Msa0632360 AT1G69570.1 62.295 61 23 0 76 136 125 185 5.24e-24 102
Msa0632360 AT5G39660.3 56.579 76 33 0 75 150 130 205 5.45e-24 103
Msa0632360 AT5G39660.1 56.579 76 33 0 75 150 130 205 5.45e-24 103
Msa0632360 AT5G39660.2 56.579 76 33 0 75 150 130 205 5.45e-24 103
Msa0632360 AT5G62430.1 58.209 67 28 0 76 142 47 113 1.13e-23 99.8
Msa0632360 AT1G47655.1 68.333 60 17 1 74 131 18 77 1.62e-23 97.4
Msa0632360 AT4G21040.1 50.562 89 40 1 85 173 27 111 1.94e-22 95.1
Msa0632360 AT4G21080.1 47.674 86 41 1 85 170 27 108 3.91e-21 91.7
Msa0632360 AT4G21030.1 55.932 59 23 1 72 130 13 68 2.83e-14 71.2

Find 126 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGATATTATCAATATTT+TGG 0.080654 4_3:+16298562 Msa0632360:three_prime_UTR
ATCAAGGAAGTGAACAATTT+TGG 0.154411 4_3:+16298152 Msa0632360:CDS
GATTTCGTCGGAGGAGATTT+AGG 0.156968 4_3:+16297782 Msa0632360:CDS
AATTGGACTGATCATGTTTC+TGG 0.157222 4_3:+16298208 Msa0632360:CDS
TCAACTTGCTTCTGTGAAAA+TGG 0.216358 4_3:+16298075 Msa0632360:CDS
TGAAGTGAAGTGAAGCTTTA+TGG 0.239721 4_3:+16298290 Msa0632360:three_prime_UTR
CCAGAAGTTGAAATCACTTT+TGG 0.251474 4_3:-16298043 None:intergenic
GCAAGTCTTGCAGAAGTGTC+TGG 0.259253 4_3:-16297489 None:intergenic
CCAAAAGTGATTTCAACTTC+TGG 0.271253 4_3:+16298043 Msa0632360:CDS
GGTGATTTGGGAAGTGCTTT+AGG 0.279369 4_3:+16297839 Msa0632360:CDS
GGAAGAGTGGATATTGTTAT+TGG 0.289267 4_3:-16297678 None:intergenic
ATGGGAGGAGTAGGTGATTT+GGG 0.291520 4_3:+16297827 Msa0632360:CDS
GAGACGGAGCCGCCGTTTCC+TGG 0.321013 4_3:-16297251 None:intergenic
CATGGGAGGAGTAGGTGATT+TGG 0.324852 4_3:+16297826 Msa0632360:CDS
AAATGGAAGATAGTATTAAT+AGG 0.328456 4_3:+16298092 Msa0632360:CDS
TGGAATAGTGCTGTTGTTAC+TGG 0.330687 4_3:+16298172 Msa0632360:CDS
CTGGTAATTCTGCAGCTAAT+TGG 0.337179 4_3:+16298191 Msa0632360:CDS
TCTCCTCCGACGAAATCATT+AGG 0.340259 4_3:-16297776 None:intergenic
GGACGAGAGGCGGGGCTCTA+AGG 0.342022 4_3:+16297522 Msa0632360:CDS
TCCCGGTCGGTGGAGGCTTC+CGG 0.345043 4_3:+16297549 Msa0632360:CDS
AATGGAAGATAGTATTAATA+GGG 0.346177 4_3:+16298093 Msa0632360:CDS
ATTTCGTCGGAGGAGATTTA+GGG 0.356337 4_3:+16297783 Msa0632360:CDS
AATTAGCCAGAAAAGGAAAT+TGG 0.359477 4_3:-16297937 None:intergenic
TTCCATTCAAAATAGATGAT+TGG 0.362979 4_3:+16298356 Msa0632360:three_prime_UTR
GAAGTGAAGCTTTATGGTTT+TGG 0.367875 4_3:+16298296 Msa0632360:three_prime_UTR
CACTCTTCCGCCGATATATT+AGG 0.387275 4_3:+16297692 Msa0632360:CDS
GGAGATTTAGGGTTAAACTA+TGG 0.392754 4_3:+16297794 Msa0632360:CDS
GCCCTATCGGACATCGATCC+TGG 0.393185 4_3:-16297362 None:intergenic
GAATATTTGATTTAACTTGC+TGG 0.396515 4_3:+16298588 Msa0632360:three_prime_UTR
TGTGACTGTGGTGGTGGTGG+TGG 0.398669 4_3:-16297296 None:intergenic
TGCTTGATCTCTTGTTTCTC+CGG 0.410783 4_3:-16297568 None:intergenic
CTTCAAGTGGTTTGGAGCAA+TGG 0.413375 4_3:+16297882 Msa0632360:CDS
CTCCTCCGACGAAATCATTA+GGG 0.413580 4_3:-16297775 None:intergenic
CTTATCTTGATGCAGCCAAC+TGG 0.417162 4_3:+16296957 Msa0632360:CDS
TTGAACTAGCACTCCCCGTT+TGG 0.423911 4_3:-16297640 None:intergenic
GCTAGCTCTGACCACCAAAC+GGG 0.434240 4_3:+16297626 Msa0632360:CDS
ACACTATAAAATTCTACATC+TGG 0.437923 4_3:-16298261 None:intergenic
GAAGGTACTGGACGAGAGGC+GGG 0.452725 4_3:+16297513 Msa0632360:CDS
GTTTGCCATCCTTGCCCTAT+CGG 0.454338 4_3:-16297375 None:intergenic
GCAAGACTTGCAGAAGGTAC+TGG 0.454376 4_3:+16297501 Msa0632360:CDS
ATGATTGGTCAAGGGATTTG+AGG 0.455775 4_3:+16298371 Msa0632360:three_prime_UTR
CTCCGGAAGCCTCCACCGAC+CGG 0.457586 4_3:-16297551 None:intergenic
TGCAGCCAACTGGCAGCAAC+AGG 0.457644 4_3:+16296967 Msa0632360:CDS
GAGGATCCACCGGCTCAATT+AGG 0.467697 4_3:+16297339 Msa0632360:CDS
CCCTCCAAATTAGCCAGAAA+AGG 0.471049 4_3:-16297944 None:intergenic
TCTTCACTATTATCACCTAA+AGG 0.472393 4_3:+16296886 Msa0632360:five_prime_UTR
TTTGAACATTTCCTTCAAAA+GGG 0.473490 4_3:-16297985 None:intergenic
AGGAATGTCCCGGTCGGTGG+AGG 0.474332 4_3:+16297542 Msa0632360:CDS
AGCAACAATAACAGTAATCA+AGG 0.480984 4_3:+16298136 Msa0632360:CDS
AGGTGTAAGGCCTAATATAT+CGG 0.483491 4_3:-16297702 None:intergenic
AACTAGCACTCCCCGTTTGG+TGG 0.483989 4_3:-16297637 None:intergenic
GTTTCTTTCTATGAGAAGGT+TGG 0.485845 4_3:+16298501 Msa0632360:three_prime_UTR
AAATAAAATCTAATATCCCT+AGG 0.490213 4_3:-16298421 None:intergenic
TTAGGTTTCTTTCTATGAGA+AGG 0.492054 4_3:+16298497 Msa0632360:three_prime_UTR
GGCTAGCTCTGACCACCAAA+CGG 0.500595 4_3:+16297625 Msa0632360:CDS
TTTAGTTACATGGGAGGAGT+AGG 0.502079 4_3:+16297818 Msa0632360:CDS
TGAGATTGTGACTGTGGTGG+TGG 0.503091 4_3:-16297302 None:intergenic
CAAGTCTTGCAGAAGTGTCT+GGG 0.504581 4_3:-16297488 None:intergenic
GATTGTGACTGTGGTGGTGG+TGG 0.504773 4_3:-16297299 None:intergenic
AGAGTGGATATTGTTATTGG+AGG 0.506614 4_3:-16297675 None:intergenic
TGGAAACTCAATAAAGTCTC+CGG 0.515855 4_3:+16297604 Msa0632360:CDS
GGACATTTCAGTGCTGCCTC+CGG 0.520025 4_3:-16297407 None:intergenic
TTCAGTGCTGCCTCCGGCAT+AGG 0.523439 4_3:-16297401 None:intergenic
TTAGATCAACTGAAAACCCT+AGG 0.525471 4_3:+16298404 Msa0632360:three_prime_UTR
CTAAGGAATGTCCCGGTCGG+TGG 0.528029 4_3:+16297539 Msa0632360:CDS
GATGGCAAACATGCCTATGC+CGG 0.531496 4_3:+16297388 Msa0632360:CDS
TCAAAATAGATGATTGGTCA+AGG 0.532360 4_3:+16298362 Msa0632360:three_prime_UTR
TTACTGAAGTTATGATGTAA+AGG 0.534579 4_3:-16297752 None:intergenic
ATCAAGATAAGCTGCTGGTA+TGG 0.536728 4_3:-16296945 None:intergenic
ATTTACCTGTTGCTGCCAGT+TGG 0.539661 4_3:-16296972 None:intergenic
CATCATCAGCAACCAGGAAA+CGG 0.545159 4_3:+16297239 Msa0632360:CDS
TCTCAACCTCATGGAGGAGG+AGG 0.545906 4_3:+16297320 Msa0632360:CDS
CACCTCAAATGTCATCATTG+AGG 0.546296 4_3:+16297720 Msa0632360:CDS
CGATCCTGGCCTAATTGAGC+CGG 0.550851 4_3:-16297348 None:intergenic
CAAGTGGTTTGGAGCAATGG+AGG 0.557508 4_3:+16297885 Msa0632360:CDS
ATGATGACATTTGAGGTGTA+AGG 0.560208 4_3:-16297715 None:intergenic
TCCGGAAGCCTCCACCGACC+GGG 0.560245 4_3:-16297550 None:intergenic
GCCAGGATCGATGTCCGATA+GGG 0.563470 4_3:+16297361 Msa0632360:CDS
CAGTCACAATCTCAACCTCA+TGG 0.566499 4_3:+16297311 Msa0632360:CDS
TCAAGCAAAAGTAGCAACAA+TGG 0.567762 4_3:+16297584 Msa0632360:CDS
TCCTGGCCTAATTGAGCCGG+TGG 0.569726 4_3:-16297345 None:intergenic
CAAAATAGATGATTGGTCAA+GGG 0.570096 4_3:+16298363 Msa0632360:three_prime_UTR
ACATTGTGAGTTCAAAGGAA+TGG 0.570549 4_3:+16298544 Msa0632360:three_prime_UTR
CAGAATCATCATCAGCAACC+AGG 0.572861 4_3:+16297233 Msa0632360:CDS
GATGTCCGATAGGGCAAGGA+TGG 0.575021 4_3:+16297370 Msa0632360:CDS
AACCTCAATGATGACATTTG+AGG 0.576269 4_3:-16297722 None:intergenic
GTTTGGTGGTCAGAGCTAGC+CGG 0.579408 4_3:-16297623 None:intergenic
CATGAAATGATAACTAGTGG+TGG 0.580805 4_3:+16298010 Msa0632360:CDS
AGTAACCCTAATGATTTCGT+CGG 0.581465 4_3:+16297770 Msa0632360:CDS
CTAATATATCGGCGGAAGAG+TGG 0.581651 4_3:-16297691 None:intergenic
ATGGAAGATAGTATTAATAG+GGG 0.583129 4_3:+16298094 Msa0632360:CDS
TCCACCGGCTCAATTAGGCC+AGG 0.583672 4_3:+16297344 Msa0632360:CDS
AATAAAATCTAATATCCCTA+GGG 0.584366 4_3:-16298420 None:intergenic
GATTTGGGAAGTGCTTTAGG+AGG 0.585086 4_3:+16297842 Msa0632360:CDS
CATGGAGGAGGAGGATCCAC+CGG 0.586222 4_3:+16297329 Msa0632360:CDS
GGCCAGGATCGATGTCCGAT+AGG 0.588624 4_3:+16297360 Msa0632360:CDS
CAATCTCAACCTCATGGAGG+AGG 0.588847 4_3:+16297317 Msa0632360:CDS
AGAAGGTACTGGACGAGAGG+CGG 0.590108 4_3:+16297512 Msa0632360:CDS
CGGGGCTCTAAGGAATGTCC+CGG 0.591050 4_3:+16297532 Msa0632360:CDS
GCTCTAAGGAATGTCCCGGT+CGG 0.592207 4_3:+16297536 Msa0632360:CDS
TAGTAACATTGTGAGTTCAA+AGG 0.592653 4_3:+16298539 Msa0632360:three_prime_UTR
CTGAAGCAGTTGTTGAGAGA+CGG 0.593094 4_3:-16297267 None:intergenic
GCTGCATCAAGATAAGCTGC+TGG 0.594629 4_3:-16296950 None:intergenic
AGTGGTTATGAATGTTTGAG+AGG 0.597784 4_3:-16296765 None:intergenic
AACCCTAATGATTTCGTCGG+AGG 0.598673 4_3:+16297773 Msa0632360:CDS
AATCATGAAATGATAACTAG+TGG 0.606438 4_3:+16298007 Msa0632360:CDS
GATCGATGTCCGATAGGGCA+AGG 0.614474 4_3:+16297366 Msa0632360:CDS
GCAAGAAAGAAATTAACAAG+TGG 0.623945 4_3:-16296783 None:intergenic
GGCAAACATGCCTATGCCGG+AGG 0.625436 4_3:+16297391 Msa0632360:CDS
AAATTCAAAGAGAGAAAACA+TGG 0.627320 4_3:+16296913 Msa0632360:exon
TAGATCAACTGAAAACCCTA+GGG 0.628130 4_3:+16298405 Msa0632360:three_prime_UTR
CTAGCTCTGACCACCAAACG+GGG 0.631845 4_3:+16297627 Msa0632360:CDS
GAGTGTCTATGTGTTTGTGT+TGG 0.643300 4_3:-16296833 None:intergenic
TGTTGATGAGTCATTGACAT+TGG 0.643301 4_3:-16297911 None:intergenic
TGCAGAAGGTACTGGACGAG+AGG 0.643597 4_3:+16297509 Msa0632360:CDS
TGAGGTTGAGATTGTGACTG+TGG 0.644332 4_3:-16297308 None:intergenic
GGTTGAGATTGTGACTGTGG+TGG 0.650158 4_3:-16297305 None:intergenic
CATCAGCAACCAGGAAACGG+CGG 0.659295 4_3:+16297242 Msa0632360:CDS
GTGGATCCTCCTCCTCCATG+AGG 0.661047 4_3:-16297326 None:intergenic
AAGGTACTGGACGAGAGGCG+GGG 0.664600 4_3:+16297514 Msa0632360:CDS
ACTTCTGCAAGACTTGCAGA+AGG 0.679196 4_3:+16297495 Msa0632360:CDS
TGAAGAGAATCACATCAACA+AGG 0.700150 4_3:-16296869 None:intergenic
TGTAAGGCCTAATATATCGG+CGG 0.708601 4_3:-16297699 None:intergenic
TAACTAGTGGTGGATATGTG+AGG 0.730675 4_3:+16298020 Msa0632360:CDS
GTGTTGGTTGATTCACAACG+TGG 0.731087 4_3:-16297428 None:intergenic
TCACAATCTCAACCTCATGG+AGG 0.766876 4_3:+16297314 Msa0632360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTCAAAAGATAAAA+AGG + chr4_3:16297055-16297074 Msa0632360:intron 10.0%
!!! TAATATGTTACTTTTAATAT+AGG + chr4_3:16298473-16298492 Msa0632360:three_prime_UTR 10.0%
!! AAATAATTCAAAAGATAAAA+AGG + chr4_3:16297055-16297074 Msa0632360:intron 10.0%
!!! TAATATGTTACTTTTAATAT+AGG + chr4_3:16298473-16298492 Msa0632360:three_prime_UTR 10.0%
!! TAAGAAAGAAATCAAATATT+TGG - chr4_3:16297128-16297147 None:intergenic 15.0%
!!! AATGGATATTATCAATATTT+TGG + chr4_3:16298562-16298581 Msa0632360:three_prime_UTR 15.0%
!!! ATGGATATTATCAATATTTT+GGG + chr4_3:16298563-16298582 Msa0632360:three_prime_UTR 15.0%
!! TAAGAAAGAAATCAAATATT+TGG - chr4_3:16297128-16297147 None:intergenic 15.0%
!!! AATGGATATTATCAATATTT+TGG + chr4_3:16298562-16298581 Msa0632360:three_prime_UTR 15.0%
!!! ATGGATATTATCAATATTTT+GGG + chr4_3:16298563-16298582 Msa0632360:three_prime_UTR 15.0%
!!! TCTTTGAATTTTTTTCCTTT+AGG - chr4_3:16296904-16296923 None:intergenic 20.0%
!! ACAGGTAAATATAATTAGTA+AGG + chr4_3:16296985-16297004 Msa0632360:intron 20.0%
!! AGTAAGGTTTCAATTTAATT+TGG + chr4_3:16297001-16297020 Msa0632360:intron 20.0%
!!! TTTTGAATTATTTTGCCTTT+TGG - chr4_3:16297048-16297067 None:intergenic 20.0%
!! AGTATATGAATTGAGAATAA+GGG - chr4_3:16297162-16297181 None:intergenic 20.0%
!! AACAACATAAATACACAAAA+AGG - chr4_3:16297203-16297222 None:intergenic 20.0%
!! AAATGGAAGATAGTATTAAT+AGG + chr4_3:16298092-16298111 Msa0632360:CDS 20.0%
!! AATGGAAGATAGTATTAATA+GGG + chr4_3:16298093-16298112 Msa0632360:CDS 20.0%
!! AATAAAATCTAATATCCCTA+GGG - chr4_3:16298423-16298442 None:intergenic 20.0%
!! AAATAAAATCTAATATCCCT+AGG - chr4_3:16298424-16298443 None:intergenic 20.0%
!!! GTTACTTTTAATATAGGTTT+AGG + chr4_3:16298479-16298498 Msa0632360:three_prime_UTR 20.0%
!!! TCTTTGAATTTTTTTCCTTT+AGG - chr4_3:16296904-16296923 None:intergenic 20.0%
!! ACAGGTAAATATAATTAGTA+AGG + chr4_3:16296985-16297004 Msa0632360:intron 20.0%
!! AGTAAGGTTTCAATTTAATT+TGG + chr4_3:16297001-16297020 Msa0632360:intron 20.0%
!!! TTTTGAATTATTTTGCCTTT+TGG - chr4_3:16297048-16297067 None:intergenic 20.0%
!! AGTATATGAATTGAGAATAA+GGG - chr4_3:16297162-16297181 None:intergenic 20.0%
!! AACAACATAAATACACAAAA+AGG - chr4_3:16297203-16297222 None:intergenic 20.0%
!! AAATGGAAGATAGTATTAAT+AGG + chr4_3:16298092-16298111 Msa0632360:CDS 20.0%
!! AATGGAAGATAGTATTAATA+GGG + chr4_3:16298093-16298112 Msa0632360:CDS 20.0%
!! AATAAAATCTAATATCCCTA+GGG - chr4_3:16298423-16298442 None:intergenic 20.0%
!! AAATAAAATCTAATATCCCT+AGG - chr4_3:16298424-16298443 None:intergenic 20.0%
!!! GTTACTTTTAATATAGGTTT+AGG + chr4_3:16298479-16298498 Msa0632360:three_prime_UTR 20.0%
! AAATTCAAAGAGAGAAAACA+TGG + chr4_3:16296913-16296932 Msa0632360:exon 25.0%
! TATTTGGTATATTCAAGAAG+AGG - chr4_3:16297112-16297131 None:intergenic 25.0%
! GAGTATATGAATTGAGAATA+AGG - chr4_3:16297163-16297182 None:intergenic 25.0%
! TTACTGAAGTTATGATGTAA+AGG - chr4_3:16297755-16297774 None:intergenic 25.0%
!!! AAACTATGGTTTTAGTTACA+TGG + chr4_3:16297808-16297827 Msa0632360:CDS 25.0%
!!! AACTATGGTTTTAGTTACAT+GGG + chr4_3:16297809-16297828 Msa0632360:CDS 25.0%
!! TCATCAATTTTATCTTCAAG+TGG + chr4_3:16297869-16297888 Msa0632360:CDS 25.0%
!! AATTTTATCTTCAAGTGGTT+TGG + chr4_3:16297874-16297893 Msa0632360:CDS 25.0%
! TTTGAACATTTCCTTCAAAA+GGG - chr4_3:16297988-16298007 None:intergenic 25.0%
!! TTTTGAACATTTCCTTCAAA+AGG - chr4_3:16297989-16298008 None:intergenic 25.0%
! AATCATGAAATGATAACTAG+TGG + chr4_3:16298007-16298026 Msa0632360:CDS 25.0%
! ATGGAAGATAGTATTAATAG+GGG + chr4_3:16298094-16298113 Msa0632360:CDS 25.0%
! ACACTATAAAATTCTACATC+TGG - chr4_3:16298264-16298283 None:intergenic 25.0%
! TTCCATTCAAAATAGATGAT+TGG + chr4_3:16298356-16298375 Msa0632360:three_prime_UTR 25.0%
! AAATTCAAAGAGAGAAAACA+TGG + chr4_3:16296913-16296932 Msa0632360:exon 25.0%
! TATTTGGTATATTCAAGAAG+AGG - chr4_3:16297112-16297131 None:intergenic 25.0%
! GAGTATATGAATTGAGAATA+AGG - chr4_3:16297163-16297182 None:intergenic 25.0%
! TTACTGAAGTTATGATGTAA+AGG - chr4_3:16297755-16297774 None:intergenic 25.0%
!!! AAACTATGGTTTTAGTTACA+TGG + chr4_3:16297808-16297827 Msa0632360:CDS 25.0%
!!! AACTATGGTTTTAGTTACAT+GGG + chr4_3:16297809-16297828 Msa0632360:CDS 25.0%
!! TCATCAATTTTATCTTCAAG+TGG + chr4_3:16297869-16297888 Msa0632360:CDS 25.0%
!! AATTTTATCTTCAAGTGGTT+TGG + chr4_3:16297874-16297893 Msa0632360:CDS 25.0%
! TTTGAACATTTCCTTCAAAA+GGG - chr4_3:16297988-16298007 None:intergenic 25.0%
!! TTTTGAACATTTCCTTCAAA+AGG - chr4_3:16297989-16298008 None:intergenic 25.0%
! AATCATGAAATGATAACTAG+TGG + chr4_3:16298007-16298026 Msa0632360:CDS 25.0%
! ATGGAAGATAGTATTAATAG+GGG + chr4_3:16298094-16298113 Msa0632360:CDS 25.0%
! ACACTATAAAATTCTACATC+TGG - chr4_3:16298264-16298283 None:intergenic 25.0%
! TTCCATTCAAAATAGATGAT+TGG + chr4_3:16298356-16298375 Msa0632360:three_prime_UTR 25.0%
GCAAGAAAGAAATTAACAAG+TGG - chr4_3:16296786-16296805 None:intergenic 30.0%
TCTTCACTATTATCACCTAA+AGG + chr4_3:16296886-16296905 Msa0632360:five_prime_UTR 30.0%
!! CTTTTGTTTCTTTGTCCAAA+AGG + chr4_3:16297030-16297049 Msa0632360:intron 30.0%
AATTGAGAATAAGGGAAGAA+AGG - chr4_3:16297154-16297173 None:intergenic 30.0%
! GAAGTAGCAAAATTTTGTGT+TGG - chr4_3:16297447-16297466 None:intergenic 30.0%
AATTAGCCAGAAAAGGAAAT+TGG - chr4_3:16297940-16297959 None:intergenic 30.0%
!!! ATTTCCTTTTCTGGCTAATT+TGG + chr4_3:16297940-16297959 Msa0632360:CDS 30.0%
!! AGTAATTTGTACCCTTTTGA+AGG + chr4_3:16297974-16297993 Msa0632360:CDS 30.0%
! TAGTATTAATAGGGGCTTTT+TGG + chr4_3:16298102-16298121 Msa0632360:CDS 30.0%
! AGTATTAATAGGGGCTTTTT+GGG + chr4_3:16298103-16298122 Msa0632360:CDS 30.0%
AGCAACAATAACAGTAATCA+AGG + chr4_3:16298136-16298155 Msa0632360:CDS 30.0%
! ATCAAGGAAGTGAACAATTT+TGG + chr4_3:16298152-16298171 Msa0632360:CDS 30.0%
!! GACCAATCATCTATTTTGAA+TGG - chr4_3:16298361-16298380 None:intergenic 30.0%
! TCAAAATAGATGATTGGTCA+AGG + chr4_3:16298362-16298381 Msa0632360:three_prime_UTR 30.0%
! CAAAATAGATGATTGGTCAA+GGG + chr4_3:16298363-16298382 Msa0632360:three_prime_UTR 30.0%
TTAGGTTTCTTTCTATGAGA+AGG + chr4_3:16298497-16298516 Msa0632360:three_prime_UTR 30.0%
TAGTAACATTGTGAGTTCAA+AGG + chr4_3:16298539-16298558 Msa0632360:three_prime_UTR 30.0%
GCAAGAAAGAAATTAACAAG+TGG - chr4_3:16296786-16296805 None:intergenic 30.0%
TCTTCACTATTATCACCTAA+AGG + chr4_3:16296886-16296905 Msa0632360:five_prime_UTR 30.0%
!! CTTTTGTTTCTTTGTCCAAA+AGG + chr4_3:16297030-16297049 Msa0632360:intron 30.0%
AATTGAGAATAAGGGAAGAA+AGG - chr4_3:16297154-16297173 None:intergenic 30.0%
! GAAGTAGCAAAATTTTGTGT+TGG - chr4_3:16297447-16297466 None:intergenic 30.0%
AATTAGCCAGAAAAGGAAAT+TGG - chr4_3:16297940-16297959 None:intergenic 30.0%
!!! ATTTCCTTTTCTGGCTAATT+TGG + chr4_3:16297940-16297959 Msa0632360:CDS 30.0%
!! AGTAATTTGTACCCTTTTGA+AGG + chr4_3:16297974-16297993 Msa0632360:CDS 30.0%
! TAGTATTAATAGGGGCTTTT+TGG + chr4_3:16298102-16298121 Msa0632360:CDS 30.0%
! AGTATTAATAGGGGCTTTTT+GGG + chr4_3:16298103-16298122 Msa0632360:CDS 30.0%
AGCAACAATAACAGTAATCA+AGG + chr4_3:16298136-16298155 Msa0632360:CDS 30.0%
! ATCAAGGAAGTGAACAATTT+TGG + chr4_3:16298152-16298171 Msa0632360:CDS 30.0%
!! GACCAATCATCTATTTTGAA+TGG - chr4_3:16298361-16298380 None:intergenic 30.0%
! TCAAAATAGATGATTGGTCA+AGG + chr4_3:16298362-16298381 Msa0632360:three_prime_UTR 30.0%
! CAAAATAGATGATTGGTCAA+GGG + chr4_3:16298363-16298382 Msa0632360:three_prime_UTR 30.0%
TTAGGTTTCTTTCTATGAGA+AGG + chr4_3:16298497-16298516 Msa0632360:three_prime_UTR 30.0%
TAGTAACATTGTGAGTTCAA+AGG + chr4_3:16298539-16298558 Msa0632360:three_prime_UTR 30.0%
AGTGGTTATGAATGTTTGAG+AGG - chr4_3:16296768-16296787 None:intergenic 35.0%
TGAAGAGAATCACATCAACA+AGG - chr4_3:16296872-16296891 None:intergenic 35.0%
TCAAGCAAAAGTAGCAACAA+TGG + chr4_3:16297584-16297603 Msa0632360:CDS 35.0%
TGGAAACTCAATAAAGTCTC+CGG + chr4_3:16297604-16297623 Msa0632360:CDS 35.0%
! AGAGTGGATATTGTTATTGG+AGG - chr4_3:16297678-16297697 None:intergenic 35.0%
GGAAGAGTGGATATTGTTAT+TGG - chr4_3:16297681-16297700 None:intergenic 35.0%
AGGTGTAAGGCCTAATATAT+CGG - chr4_3:16297705-16297724 None:intergenic 35.0%
! ATGATGACATTTGAGGTGTA+AGG - chr4_3:16297718-16297737 None:intergenic 35.0%
AACCTCAATGATGACATTTG+AGG - chr4_3:16297725-16297744 None:intergenic 35.0%
AGTAACCCTAATGATTTCGT+CGG + chr4_3:16297770-16297789 Msa0632360:CDS 35.0%
! GGAGATTTAGGGTTAAACTA+TGG + chr4_3:16297794-16297813 Msa0632360:CDS 35.0%
!!! TATGGTTTTAGTTACATGGG+AGG + chr4_3:16297812-16297831 Msa0632360:CDS 35.0%
! TGTTGATGAGTCATTGACAT+TGG - chr4_3:16297914-16297933 None:intergenic 35.0%
CATGAAATGATAACTAGTGG+TGG + chr4_3:16298010-16298029 Msa0632360:CDS 35.0%
! CCAGAAGTTGAAATCACTTT+TGG - chr4_3:16298046-16298065 None:intergenic 35.0%
CCAAAAGTGATTTCAACTTC+TGG + chr4_3:16298043-16298062 Msa0632360:CDS 35.0%
! TCAACTTGCTTCTGTGAAAA+TGG + chr4_3:16298075-16298094 Msa0632360:CDS 35.0%
AATTGGACTGATCATGTTTC+TGG + chr4_3:16298208-16298227 Msa0632360:CDS 35.0%
TGAAGTGAAGTGAAGCTTTA+TGG + chr4_3:16298290-16298309 Msa0632360:three_prime_UTR 35.0%
!! GAAGTGAAGCTTTATGGTTT+TGG + chr4_3:16298296-16298315 Msa0632360:three_prime_UTR 35.0%
!!! AGCTTTATGGTTTTGGTTAG+TGG + chr4_3:16298303-16298322 Msa0632360:three_prime_UTR 35.0%
TTAGATCAACTGAAAACCCT+AGG + chr4_3:16298404-16298423 Msa0632360:three_prime_UTR 35.0%
TAGATCAACTGAAAACCCTA+GGG + chr4_3:16298405-16298424 Msa0632360:three_prime_UTR 35.0%
GTTTCTTTCTATGAGAAGGT+TGG + chr4_3:16298501-16298520 Msa0632360:three_prime_UTR 35.0%
ACATTGTGAGTTCAAAGGAA+TGG + chr4_3:16298544-16298563 Msa0632360:three_prime_UTR 35.0%
AGTGGTTATGAATGTTTGAG+AGG - chr4_3:16296768-16296787 None:intergenic 35.0%
TGAAGAGAATCACATCAACA+AGG - chr4_3:16296872-16296891 None:intergenic 35.0%
TCAAGCAAAAGTAGCAACAA+TGG + chr4_3:16297584-16297603 Msa0632360:CDS 35.0%
TGGAAACTCAATAAAGTCTC+CGG + chr4_3:16297604-16297623 Msa0632360:CDS 35.0%
! AGAGTGGATATTGTTATTGG+AGG - chr4_3:16297678-16297697 None:intergenic 35.0%
GGAAGAGTGGATATTGTTAT+TGG - chr4_3:16297681-16297700 None:intergenic 35.0%
AGGTGTAAGGCCTAATATAT+CGG - chr4_3:16297705-16297724 None:intergenic 35.0%
! ATGATGACATTTGAGGTGTA+AGG - chr4_3:16297718-16297737 None:intergenic 35.0%
AACCTCAATGATGACATTTG+AGG - chr4_3:16297725-16297744 None:intergenic 35.0%
AGTAACCCTAATGATTTCGT+CGG + chr4_3:16297770-16297789 Msa0632360:CDS 35.0%
! GGAGATTTAGGGTTAAACTA+TGG + chr4_3:16297794-16297813 Msa0632360:CDS 35.0%
!!! TATGGTTTTAGTTACATGGG+AGG + chr4_3:16297812-16297831 Msa0632360:CDS 35.0%
! TGTTGATGAGTCATTGACAT+TGG - chr4_3:16297914-16297933 None:intergenic 35.0%
CATGAAATGATAACTAGTGG+TGG + chr4_3:16298010-16298029 Msa0632360:CDS 35.0%
! CCAGAAGTTGAAATCACTTT+TGG - chr4_3:16298046-16298065 None:intergenic 35.0%
CCAAAAGTGATTTCAACTTC+TGG + chr4_3:16298043-16298062 Msa0632360:CDS 35.0%
! TCAACTTGCTTCTGTGAAAA+TGG + chr4_3:16298075-16298094 Msa0632360:CDS 35.0%
AATTGGACTGATCATGTTTC+TGG + chr4_3:16298208-16298227 Msa0632360:CDS 35.0%
TGAAGTGAAGTGAAGCTTTA+TGG + chr4_3:16298290-16298309 Msa0632360:three_prime_UTR 35.0%
!! GAAGTGAAGCTTTATGGTTT+TGG + chr4_3:16298296-16298315 Msa0632360:three_prime_UTR 35.0%
!!! AGCTTTATGGTTTTGGTTAG+TGG + chr4_3:16298303-16298322 Msa0632360:three_prime_UTR 35.0%
TTAGATCAACTGAAAACCCT+AGG + chr4_3:16298404-16298423 Msa0632360:three_prime_UTR 35.0%
TAGATCAACTGAAAACCCTA+GGG + chr4_3:16298405-16298424 Msa0632360:three_prime_UTR 35.0%
GTTTCTTTCTATGAGAAGGT+TGG + chr4_3:16298501-16298520 Msa0632360:three_prime_UTR 35.0%
ACATTGTGAGTTCAAAGGAA+TGG + chr4_3:16298544-16298563 Msa0632360:three_prime_UTR 35.0%
GAGTGTCTATGTGTTTGTGT+TGG - chr4_3:16296836-16296855 None:intergenic 40.0%
ATCAAGATAAGCTGCTGGTA+TGG - chr4_3:16296948-16296967 None:intergenic 40.0%
! TGCTTGATCTCTTGTTTCTC+CGG - chr4_3:16297571-16297590 None:intergenic 40.0%
TGTAAGGCCTAATATATCGG+CGG - chr4_3:16297702-16297721 None:intergenic 40.0%
CACCTCAAATGTCATCATTG+AGG + chr4_3:16297720-16297739 Msa0632360:CDS 40.0%
ATTTCGTCGGAGGAGATTTA+GGG + chr4_3:16297783-16297802 Msa0632360:CDS 40.0%
TTTAGTTACATGGGAGGAGT+AGG + chr4_3:16297818-16297837 Msa0632360:CDS 40.0%
! ACAGCACCAATTTCCTTTTC+TGG + chr4_3:16297931-16297950 Msa0632360:CDS 40.0%
!!! TCCTTTTCTGGCTAATTTGG+AGG + chr4_3:16297943-16297962 Msa0632360:CDS 40.0%
!!! CCTTTTCTGGCTAATTTGGA+GGG + chr4_3:16297944-16297963 Msa0632360:CDS 40.0%
!! TAACTAGTGGTGGATATGTG+AGG + chr4_3:16298020-16298039 Msa0632360:CDS 40.0%
! TGGAATAGTGCTGTTGTTAC+TGG + chr4_3:16298172-16298191 Msa0632360:CDS 40.0%
CTGGTAATTCTGCAGCTAAT+TGG + chr4_3:16298191-16298210 Msa0632360:CDS 40.0%
! ATGATTGGTCAAGGGATTTG+AGG + chr4_3:16298371-16298390 Msa0632360:three_prime_UTR 40.0%
GAGTGTCTATGTGTTTGTGT+TGG - chr4_3:16296836-16296855 None:intergenic 40.0%
ATCAAGATAAGCTGCTGGTA+TGG - chr4_3:16296948-16296967 None:intergenic 40.0%
! TGCTTGATCTCTTGTTTCTC+CGG - chr4_3:16297571-16297590 None:intergenic 40.0%
TGTAAGGCCTAATATATCGG+CGG - chr4_3:16297702-16297721 None:intergenic 40.0%
CACCTCAAATGTCATCATTG+AGG + chr4_3:16297720-16297739 Msa0632360:CDS 40.0%
ATTTCGTCGGAGGAGATTTA+GGG + chr4_3:16297783-16297802 Msa0632360:CDS 40.0%
TTTAGTTACATGGGAGGAGT+AGG + chr4_3:16297818-16297837 Msa0632360:CDS 40.0%
! ACAGCACCAATTTCCTTTTC+TGG + chr4_3:16297931-16297950 Msa0632360:CDS 40.0%
!!! TCCTTTTCTGGCTAATTTGG+AGG + chr4_3:16297943-16297962 Msa0632360:CDS 40.0%
!!! CCTTTTCTGGCTAATTTGGA+GGG + chr4_3:16297944-16297963 Msa0632360:CDS 40.0%
!! TAACTAGTGGTGGATATGTG+AGG + chr4_3:16298020-16298039 Msa0632360:CDS 40.0%
! TGGAATAGTGCTGTTGTTAC+TGG + chr4_3:16298172-16298191 Msa0632360:CDS 40.0%
CTGGTAATTCTGCAGCTAAT+TGG + chr4_3:16298191-16298210 Msa0632360:CDS 40.0%
! ATGATTGGTCAAGGGATTTG+AGG + chr4_3:16298371-16298390 Msa0632360:three_prime_UTR 40.0%
CTTATCTTGATGCAGCCAAC+TGG + chr4_3:16296957-16296976 Msa0632360:CDS 45.0%
ATTTACCTGTTGCTGCCAGT+TGG - chr4_3:16296975-16296994 None:intergenic 45.0%
CAGAATCATCATCAGCAACC+AGG + chr4_3:16297233-16297252 Msa0632360:CDS 45.0%
CATCATCAGCAACCAGGAAA+CGG + chr4_3:16297239-16297258 Msa0632360:CDS 45.0%
CTGAAGCAGTTGTTGAGAGA+CGG - chr4_3:16297270-16297289 None:intergenic 45.0%
TGAGGTTGAGATTGTGACTG+TGG - chr4_3:16297311-16297330 None:intergenic 45.0%
CAGTCACAATCTCAACCTCA+TGG + chr4_3:16297311-16297330 Msa0632360:CDS 45.0%
TCACAATCTCAACCTCATGG+AGG + chr4_3:16297314-16297333 Msa0632360:CDS 45.0%
!! GTGTTGGTTGATTCACAACG+TGG - chr4_3:16297431-16297450 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTGTCT+GGG - chr4_3:16297491-16297510 None:intergenic 45.0%
ACTTCTGCAAGACTTGCAGA+AGG + chr4_3:16297495-16297514 Msa0632360:CDS 45.0%
CTAATATATCGGCGGAAGAG+TGG - chr4_3:16297694-16297713 None:intergenic 45.0%
CACTCTTCCGCCGATATATT+AGG + chr4_3:16297692-16297711 Msa0632360:CDS 45.0%
AACCCTAATGATTTCGTCGG+AGG + chr4_3:16297773-16297792 Msa0632360:CDS 45.0%
CTCCTCCGACGAAATCATTA+GGG - chr4_3:16297778-16297797 None:intergenic 45.0%
TCTCCTCCGACGAAATCATT+AGG - chr4_3:16297779-16297798 None:intergenic 45.0%
GATTTCGTCGGAGGAGATTT+AGG + chr4_3:16297782-16297801 Msa0632360:CDS 45.0%
ATGGGAGGAGTAGGTGATTT+GGG + chr4_3:16297827-16297846 Msa0632360:CDS 45.0%
!! GGTGATTTGGGAAGTGCTTT+AGG + chr4_3:16297839-16297858 Msa0632360:CDS 45.0%
!! GATTTGGGAAGTGCTTTAGG+AGG + chr4_3:16297842-16297861 Msa0632360:CDS 45.0%
! CTTCAAGTGGTTTGGAGCAA+TGG + chr4_3:16297882-16297901 Msa0632360:CDS 45.0%
CCCTCCAAATTAGCCAGAAA+AGG - chr4_3:16297947-16297966 None:intergenic 45.0%
CTTATCTTGATGCAGCCAAC+TGG + chr4_3:16296957-16296976 Msa0632360:CDS 45.0%
ATTTACCTGTTGCTGCCAGT+TGG - chr4_3:16296975-16296994 None:intergenic 45.0%
CAGAATCATCATCAGCAACC+AGG + chr4_3:16297233-16297252 Msa0632360:CDS 45.0%
CATCATCAGCAACCAGGAAA+CGG + chr4_3:16297239-16297258 Msa0632360:CDS 45.0%
CTGAAGCAGTTGTTGAGAGA+CGG - chr4_3:16297270-16297289 None:intergenic 45.0%
TGAGGTTGAGATTGTGACTG+TGG - chr4_3:16297311-16297330 None:intergenic 45.0%
CAGTCACAATCTCAACCTCA+TGG + chr4_3:16297311-16297330 Msa0632360:CDS 45.0%
TCACAATCTCAACCTCATGG+AGG + chr4_3:16297314-16297333 Msa0632360:CDS 45.0%
!! GTGTTGGTTGATTCACAACG+TGG - chr4_3:16297431-16297450 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTGTCT+GGG - chr4_3:16297491-16297510 None:intergenic 45.0%
ACTTCTGCAAGACTTGCAGA+AGG + chr4_3:16297495-16297514 Msa0632360:CDS 45.0%
CTAATATATCGGCGGAAGAG+TGG - chr4_3:16297694-16297713 None:intergenic 45.0%
CACTCTTCCGCCGATATATT+AGG + chr4_3:16297692-16297711 Msa0632360:CDS 45.0%
AACCCTAATGATTTCGTCGG+AGG + chr4_3:16297773-16297792 Msa0632360:CDS 45.0%
CTCCTCCGACGAAATCATTA+GGG - chr4_3:16297778-16297797 None:intergenic 45.0%
TCTCCTCCGACGAAATCATT+AGG - chr4_3:16297779-16297798 None:intergenic 45.0%
GATTTCGTCGGAGGAGATTT+AGG + chr4_3:16297782-16297801 Msa0632360:CDS 45.0%
ATGGGAGGAGTAGGTGATTT+GGG + chr4_3:16297827-16297846 Msa0632360:CDS 45.0%
!! GGTGATTTGGGAAGTGCTTT+AGG + chr4_3:16297839-16297858 Msa0632360:CDS 45.0%
!! GATTTGGGAAGTGCTTTAGG+AGG + chr4_3:16297842-16297861 Msa0632360:CDS 45.0%
! CTTCAAGTGGTTTGGAGCAA+TGG + chr4_3:16297882-16297901 Msa0632360:CDS 45.0%
CCCTCCAAATTAGCCAGAAA+AGG - chr4_3:16297947-16297966 None:intergenic 45.0%
GCTGCATCAAGATAAGCTGC+TGG - chr4_3:16296953-16296972 None:intergenic 50.0%
TGAGATTGTGACTGTGGTGG+TGG - chr4_3:16297305-16297324 None:intergenic 50.0%
GGTTGAGATTGTGACTGTGG+TGG - chr4_3:16297308-16297327 None:intergenic 50.0%
CAATCTCAACCTCATGGAGG+AGG + chr4_3:16297317-16297336 Msa0632360:CDS 50.0%
GTTTGCCATCCTTGCCCTAT+CGG - chr4_3:16297378-16297397 None:intergenic 50.0%
GATGGCAAACATGCCTATGC+CGG + chr4_3:16297388-16297407 Msa0632360:CDS 50.0%
!! GCAAGTCTTGCAGAAGTGTC+TGG - chr4_3:16297492-16297511 None:intergenic 50.0%
! GCAAGACTTGCAGAAGGTAC+TGG + chr4_3:16297501-16297520 Msa0632360:CDS 50.0%
TTGAACTAGCACTCCCCGTT+TGG - chr4_3:16297643-16297662 None:intergenic 50.0%
CATGGGAGGAGTAGGTGATT+TGG + chr4_3:16297826-16297845 Msa0632360:CDS 50.0%
! CAAGTGGTTTGGAGCAATGG+AGG + chr4_3:16297885-16297904 Msa0632360:CDS 50.0%
GCTGCATCAAGATAAGCTGC+TGG - chr4_3:16296953-16296972 None:intergenic 50.0%
TGAGATTGTGACTGTGGTGG+TGG - chr4_3:16297305-16297324 None:intergenic 50.0%
GGTTGAGATTGTGACTGTGG+TGG - chr4_3:16297308-16297327 None:intergenic 50.0%
CAATCTCAACCTCATGGAGG+AGG + chr4_3:16297317-16297336 Msa0632360:CDS 50.0%
GTTTGCCATCCTTGCCCTAT+CGG - chr4_3:16297378-16297397 None:intergenic 50.0%
GATGGCAAACATGCCTATGC+CGG + chr4_3:16297388-16297407 Msa0632360:CDS 50.0%
!! GCAAGTCTTGCAGAAGTGTC+TGG - chr4_3:16297492-16297511 None:intergenic 50.0%
! GCAAGACTTGCAGAAGGTAC+TGG + chr4_3:16297501-16297520 Msa0632360:CDS 50.0%
TTGAACTAGCACTCCCCGTT+TGG - chr4_3:16297643-16297662 None:intergenic 50.0%
CATGGGAGGAGTAGGTGATT+TGG + chr4_3:16297826-16297845 Msa0632360:CDS 50.0%
! CAAGTGGTTTGGAGCAATGG+AGG + chr4_3:16297885-16297904 Msa0632360:CDS 50.0%
CATCAGCAACCAGGAAACGG+CGG + chr4_3:16297242-16297261 Msa0632360:CDS 55.0%
!! GATTGTGACTGTGGTGGTGG+TGG - chr4_3:16297302-16297321 None:intergenic 55.0%
TCTCAACCTCATGGAGGAGG+AGG + chr4_3:16297320-16297339 Msa0632360:CDS 55.0%
!! GAGGATCCACCGGCTCAATT+AGG + chr4_3:16297339-16297358 Msa0632360:CDS 55.0%
CGATCCTGGCCTAATTGAGC+CGG - chr4_3:16297351-16297370 None:intergenic 55.0%
GCCAGGATCGATGTCCGATA+GGG + chr4_3:16297361-16297380 Msa0632360:CDS 55.0%
GATCGATGTCCGATAGGGCA+AGG + chr4_3:16297366-16297385 Msa0632360:CDS 55.0%
GATGTCCGATAGGGCAAGGA+TGG + chr4_3:16297370-16297389 Msa0632360:CDS 55.0%
GGACATTTCAGTGCTGCCTC+CGG - chr4_3:16297410-16297429 None:intergenic 55.0%
!! TGCAGAAGGTACTGGACGAG+AGG + chr4_3:16297509-16297528 Msa0632360:CDS 55.0%
!! AGAAGGTACTGGACGAGAGG+CGG + chr4_3:16297512-16297531 Msa0632360:CDS 55.0%
!! GCTCTAAGGAATGTCCCGGT+CGG + chr4_3:16297536-16297555 Msa0632360:CDS 55.0%
! GTTTGGTGGTCAGAGCTAGC+CGG - chr4_3:16297626-16297645 None:intergenic 55.0%
!! GGCTAGCTCTGACCACCAAA+CGG + chr4_3:16297625-16297644 Msa0632360:CDS 55.0%
!! GCTAGCTCTGACCACCAAAC+GGG + chr4_3:16297626-16297645 Msa0632360:CDS 55.0%
!! CTAGCTCTGACCACCAAACG+GGG + chr4_3:16297627-16297646 Msa0632360:CDS 55.0%
AACTAGCACTCCCCGTTTGG+TGG - chr4_3:16297640-16297659 None:intergenic 55.0%
CATCAGCAACCAGGAAACGG+CGG + chr4_3:16297242-16297261 Msa0632360:CDS 55.0%
!! GATTGTGACTGTGGTGGTGG+TGG - chr4_3:16297302-16297321 None:intergenic 55.0%
TCTCAACCTCATGGAGGAGG+AGG + chr4_3:16297320-16297339 Msa0632360:CDS 55.0%
!! GAGGATCCACCGGCTCAATT+AGG + chr4_3:16297339-16297358 Msa0632360:CDS 55.0%
CGATCCTGGCCTAATTGAGC+CGG - chr4_3:16297351-16297370 None:intergenic 55.0%
GCCAGGATCGATGTCCGATA+GGG + chr4_3:16297361-16297380 Msa0632360:CDS 55.0%
GATCGATGTCCGATAGGGCA+AGG + chr4_3:16297366-16297385 Msa0632360:CDS 55.0%
GATGTCCGATAGGGCAAGGA+TGG + chr4_3:16297370-16297389 Msa0632360:CDS 55.0%
GGACATTTCAGTGCTGCCTC+CGG - chr4_3:16297410-16297429 None:intergenic 55.0%
!! TGCAGAAGGTACTGGACGAG+AGG + chr4_3:16297509-16297528 Msa0632360:CDS 55.0%
!! AGAAGGTACTGGACGAGAGG+CGG + chr4_3:16297512-16297531 Msa0632360:CDS 55.0%
!! GCTCTAAGGAATGTCCCGGT+CGG + chr4_3:16297536-16297555 Msa0632360:CDS 55.0%
! GTTTGGTGGTCAGAGCTAGC+CGG - chr4_3:16297626-16297645 None:intergenic 55.0%
!! GGCTAGCTCTGACCACCAAA+CGG + chr4_3:16297625-16297644 Msa0632360:CDS 55.0%
!! GCTAGCTCTGACCACCAAAC+GGG + chr4_3:16297626-16297645 Msa0632360:CDS 55.0%
!! CTAGCTCTGACCACCAAACG+GGG + chr4_3:16297627-16297646 Msa0632360:CDS 55.0%
AACTAGCACTCCCCGTTTGG+TGG - chr4_3:16297640-16297659 None:intergenic 55.0%
TGCAGCCAACTGGCAGCAAC+AGG + chr4_3:16296967-16296986 Msa0632360:CDS 60.0%
!! TGTGACTGTGGTGGTGGTGG+TGG - chr4_3:16297299-16297318 None:intergenic 60.0%
GTGGATCCTCCTCCTCCATG+AGG - chr4_3:16297329-16297348 None:intergenic 60.0%
CATGGAGGAGGAGGATCCAC+CGG + chr4_3:16297329-16297348 Msa0632360:CDS 60.0%
!! TCCACCGGCTCAATTAGGCC+AGG + chr4_3:16297344-16297363 Msa0632360:CDS 60.0%
TCCTGGCCTAATTGAGCCGG+TGG - chr4_3:16297348-16297367 None:intergenic 60.0%
GGCCAGGATCGATGTCCGAT+AGG + chr4_3:16297360-16297379 Msa0632360:CDS 60.0%
GCCCTATCGGACATCGATCC+TGG - chr4_3:16297365-16297384 None:intergenic 60.0%
GGCAAACATGCCTATGCCGG+AGG + chr4_3:16297391-16297410 Msa0632360:CDS 60.0%
TTCAGTGCTGCCTCCGGCAT+AGG - chr4_3:16297404-16297423 None:intergenic 60.0%
!! GAAGGTACTGGACGAGAGGC+GGG + chr4_3:16297513-16297532 Msa0632360:CDS 60.0%
!! AAGGTACTGGACGAGAGGCG+GGG + chr4_3:16297514-16297533 Msa0632360:CDS 60.0%
!! CGGGGCTCTAAGGAATGTCC+CGG + chr4_3:16297532-16297551 Msa0632360:CDS 60.0%
CTAAGGAATGTCCCGGTCGG+TGG + chr4_3:16297539-16297558 Msa0632360:CDS 60.0%
TGCAGCCAACTGGCAGCAAC+AGG + chr4_3:16296967-16296986 Msa0632360:CDS 60.0%
!! TGTGACTGTGGTGGTGGTGG+TGG - chr4_3:16297299-16297318 None:intergenic 60.0%
GTGGATCCTCCTCCTCCATG+AGG - chr4_3:16297329-16297348 None:intergenic 60.0%
CATGGAGGAGGAGGATCCAC+CGG + chr4_3:16297329-16297348 Msa0632360:CDS 60.0%
!! TCCACCGGCTCAATTAGGCC+AGG + chr4_3:16297344-16297363 Msa0632360:CDS 60.0%
TCCTGGCCTAATTGAGCCGG+TGG - chr4_3:16297348-16297367 None:intergenic 60.0%
GGCCAGGATCGATGTCCGAT+AGG + chr4_3:16297360-16297379 Msa0632360:CDS 60.0%
GCCCTATCGGACATCGATCC+TGG - chr4_3:16297365-16297384 None:intergenic 60.0%
GGCAAACATGCCTATGCCGG+AGG + chr4_3:16297391-16297410 Msa0632360:CDS 60.0%
TTCAGTGCTGCCTCCGGCAT+AGG - chr4_3:16297404-16297423 None:intergenic 60.0%
!! GAAGGTACTGGACGAGAGGC+GGG + chr4_3:16297513-16297532 Msa0632360:CDS 60.0%
!! AAGGTACTGGACGAGAGGCG+GGG + chr4_3:16297514-16297533 Msa0632360:CDS 60.0%
!! CGGGGCTCTAAGGAATGTCC+CGG + chr4_3:16297532-16297551 Msa0632360:CDS 60.0%
CTAAGGAATGTCCCGGTCGG+TGG + chr4_3:16297539-16297558 Msa0632360:CDS 60.0%
!! GACTGTGGTGGTGGTGGTGG+TGG - chr4_3:16297296-16297315 None:intergenic 65.0%
AGGAATGTCCCGGTCGGTGG+AGG + chr4_3:16297542-16297561 Msa0632360:CDS 65.0%
!! GACTGTGGTGGTGGTGGTGG+TGG - chr4_3:16297296-16297315 None:intergenic 65.0%
AGGAATGTCCCGGTCGGTGG+AGG + chr4_3:16297542-16297561 Msa0632360:CDS 65.0%
GAGACGGAGCCGCCGTTTCC+TGG - chr4_3:16297254-16297273 None:intergenic 70.0%
GGACGAGAGGCGGGGCTCTA+AGG + chr4_3:16297522-16297541 Msa0632360:CDS 70.0%
TCCCGGTCGGTGGAGGCTTC+CGG + chr4_3:16297549-16297568 Msa0632360:CDS 70.0%
TCCGGAAGCCTCCACCGACC+GGG - chr4_3:16297553-16297572 None:intergenic 70.0%
CTCCGGAAGCCTCCACCGAC+CGG - chr4_3:16297554-16297573 None:intergenic 70.0%
GAGACGGAGCCGCCGTTTCC+TGG - chr4_3:16297254-16297273 None:intergenic 70.0%
GGACGAGAGGCGGGGCTCTA+AGG + chr4_3:16297522-16297541 Msa0632360:CDS 70.0%
TCCCGGTCGGTGGAGGCTTC+CGG + chr4_3:16297549-16297568 Msa0632360:CDS 70.0%
TCCGGAAGCCTCCACCGACC+GGG - chr4_3:16297553-16297572 None:intergenic 70.0%
CTCCGGAAGCCTCCACCGAC+CGG - chr4_3:16297554-16297573 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 16296749 16298609 16296749 ID=Msa0632360;Name=Msa0632360
chr4_3 mRNA 16296749 16298609 16296749 ID=Msa0632360-mRNA-1;Parent=Msa0632360;Name=Msa0632360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=183|1|1|1|1|1|2|339|365
chr4_3 exon 16296749 16296988 16296749 ID=Msa0632360-mRNA-1:exon:4606;Parent=Msa0632360-mRNA-1
chr4_3 exon 16297230 16298609 16297230 ID=Msa0632360-mRNA-1:exon:4607;Parent=Msa0632360-mRNA-1
chr4_3 five_prime_UTR 16296749 16296931 16296749 ID=Msa0632360-mRNA-1:five_prime_utr;Parent=Msa0632360-mRNA-1
chr4_3 CDS 16296932 16296988 16296932 ID=Msa0632360-mRNA-1:cds;Parent=Msa0632360-mRNA-1
chr4_3 CDS 16297230 16298270 16297230 ID=Msa0632360-mRNA-1:cds;Parent=Msa0632360-mRNA-1
chr4_3 three_prime_UTR 16298271 16298609 16298271 ID=Msa0632360-mRNA-1:three_prime_utr;Parent=Msa0632360-mRNA-1
Gene Sequence

>Msa0632360

ATGGTTTTTACTTCCATACCAGCAGCTTATCTTGATGCAGCCAACTGGCAGCAACAGCAACAGAATCATCATCAGCAACCAGGAAACGGCGGCTCCGTCTCTCAACAACTGCTTCAGACACCACCACCACCACCACCACAGTCACAATCTCAACCTCATGGAGGAGGAGGATCCACCGGCTCAATTAGGCCAGGATCGATGTCCGATAGGGCAAGGATGGCAAACATGCCTATGCCGGAGGCAGCACTGAAATGTCCACGTTGTGAATCAACCAACACAAAATTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCCAGACACTTCTGCAAGACTTGCAGAAGGTACTGGACGAGAGGCGGGGCTCTAAGGAATGTCCCGGTCGGTGGAGGCTTCCGGAGAAACAAGAGATCAAGCAAAAGTAGCAACAATGGAAACTCAATAAAGTCTCCGGCTAGCTCTGACCACCAAACGGGGAGTGCTAGTTCAACAAACTCAATCTCCTCCAATAACAATATCCACTCTTCCGCCGATATATTAGGCCTTACACCTCAAATGTCATCATTGAGGTTCATGACACCTTTACATCATAACTTCAGTAACCCTAATGATTTCGTCGGAGGAGATTTAGGGTTAAACTATGGTTTTAGTTACATGGGAGGAGTAGGTGATTTGGGAAGTGCTTTAGGAGGTAATTCATCAATTTTATCTTCAAGTGGTTTGGAGCAATGGAGGATGCCAATGTCAATGACTCATCAACAGCACCAATTTCCTTTTCTGGCTAATTTGGAGGGTTCAAATAGTAATTTGTACCCTTTTGAAGGAAATGTTCAAAATCATGAAATGATAACTAGTGGTGGATATGTGAGGCCAAAAGTGATTTCAACTTCTGGAATTATGACTCAACTTGCTTCTGTGAAAATGGAAGATAGTATTAATAGGGGCTTTTTGGGAATTAGCACAAGCAACAATAACAGTAATCAAGGAAGTGAACAATTTTGGAATAGTGCTGTTGTTACTGGTAATTCTGCAGCTAATTGGACTGATCATGTTTCTGGTTTTAGCTCTTCTTCTAATACTACTAGTAACCAGATGTAG
Protein sequence

>Msa0632360

MVFTSIPAAYLDAANWQQQQQNHHQQPGNGGSVSQQLLQTPPPPPPQSQSQPHGGGGSTGSIRPGSMSDRARMANMPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSSKSSNNGNSIKSPASSDHQTGSASSTNSISSNNNIHSSADILGLTPQMSSLRFMTPLHHNFSNPNDFVGGDLGLNYGFSYMGGVGDLGSALGGNSSILSSSGLEQWRMPMSMTHQQHQFPFLANLEGSNSNLYPFEGNVQNHEMITSGGYVRPKVISTSGIMTQLASVKMEDSINRGFLGISTSNNNSNQGSEQFWNSAVVTGNSAANWTDHVSGFSSSSNTTSNQM*