AlfalfaGEDB | Msa0633710

M. sativa cultivar zhongmu-4 / Msa0633710

KEGG: K06620|K12590
GO: GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032989 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045787 GO:0045893 GO:0045935 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051302 GO:0051445 GO:0051446 GO:0051726 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF02319.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633710	XP_003606095.2	95.652	460	17	1	1	457	1	460	0.0	908

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633710	sp\|Q9FV71\|E2FB_ARATH	57.306	438	149	10	19	430	13	438	2.19e-155	451

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633710	A0A396I6V2	95.652	460	17	1	1	457	1	460	0.0	908

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TFs/TRs:

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Gene ID	Type	Classification
Msa0633710	TF	E2F-DP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633710	MtrunA17_Chr4g0025881	95.652	460	17	1	1	457	1	460	0.0	908
Msa0633710	MtrunA17_Chr1g0177351	58.314	439	170	7	19	451	25	456	3.77e-170	486
Msa0633710	MtrunA17_Chr3g0142581	47.569	288	141	3	126	413	93	370	2.71e-82	258
Msa0633710	MtrunA17_Chr4g0059551	46.269	67	36	0	135	201	17	83	7.00e-12	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633710	AT5G22220.2	57.306	438	149	10	19	430	13	438	2.22e-156	451
Msa0633710	AT5G22220.3	57.078	438	147	11	19	430	13	435	4.45e-154	446
Msa0633710	AT2G36010.1	52.174	437	156	12	19	420	39	457	3.26e-136	400
Msa0633710	AT2G36010.3	52.164	439	155	13	19	420	39	459	9.05e-135	397
Msa0633710	AT2G36010.2	42.887	478	169	14	19	420	39	488	5.10e-102	314
Msa0633710	AT1G47870.2	49.821	279	98	5	134	411	153	390	5.46e-78	248
Msa0633710	AT1G47870.1	49.821	279	98	5	134	411	154	391	5.68e-78	248
Msa0633710	AT5G14960.1	41.892	74	43	0	128	201	6	79	4.71e-12	67.8
Msa0633710	AT3G01330.1	37.647	85	48	1	135	219	21	100	6.05e-11	64.3
Msa0633710	AT3G48160.1	43.284	67	38	0	135	201	34	100	8.09e-11	63.9

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Find 187 sgRNAs with CRISPR-Local

Find 492 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCCCTTTCTCGCCGC+CGG	0.513027	4_3:+19491949	Msa0633710:CDS
AAACTATCATCGGCCTCCCC+TGG	0.512893	4_3:-19495545	None:intergenic
AAAGAACTTGCCCTGCTTCC+AGG	0.295888	4_3:+19496179	Msa0633710:CDS
AAAGTAGAAGTTAATAACGA+GGG	0.654655	4_3:-19497933	None:intergenic
AACAATCACGACTTCGTGAG+TGG	0.509503	4_3:+19496885	Msa0633710:CDS
AACAATTGAGGAACGCCGGT+TGG	0.534246	4_3:+19495862	Msa0633710:CDS
AACATTAAGCATACCTAACA+AGG	0.592586	4_3:-19496535	None:intergenic
AACCTTCAATCCAAACTCGC+AGG	0.568624	4_3:-19497586	None:intergenic
AACTTTGTATATTGTTATGG+TGG	0.492561	4_3:+19497757	Msa0633710:three_prime_UTR
AACTTTGTTAACTTCTGGAC+TGG	0.365621	4_3:-19496769	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAAGATGATATGATGA+TGG	-	chr4_3:19491738-19491757	None:intergenic	30.0%
TATGTATGTGTTTGGAAAGT+GGG	-	chr4_3:19491796-19491815	None:intergenic	30.0%
TAAGGTGATTTAAGGAACTA+GGG	+	chr4_3:19492127-19492146	Msa0633710:intron	30.0%
TGTTCAGTTATATGAGCTTT+AGG	+	chr4_3:19492503-19492522	Msa0633710:intron	30.0%
GTTCAGTTATATGAGCTTTA+GGG	+	chr4_3:19492504-19492523	Msa0633710:intron	30.0%
AATGGTTTATTTGCAGCTTA+TGG	+	chr4_3:19492540-19492559	Msa0633710:intron	30.0%
GTACTAAACCTAAAGACTAA+GGG	-	chr4_3:19492763-19492782	None:intergenic	30.0%
AGTACTAAACCTAAAGACTA+AGG	-	chr4_3:19492764-19492783	None:intergenic	30.0%
AGTACTTGATCAATGTATTG+AGG	+	chr4_3:19492778-19492797	Msa0633710:intron	30.0%
AAGGAAAAGAATTGGTGTAT+TGG	+	chr4_3:19492902-19492921	Msa0633710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	19491698	19497957	19491698	ID=Msa0633710;Name=Msa0633710
chr4_3	mRNA	19491698	19497957	19491698	ID=Msa0633710-mRNA-1;Parent=Msa0633710;Name=Msa0633710-mRNA-1;_AED=0.09;_eAED=0.09;_QI=170\|0.92\|0.92\|1\|1\|1\|14\|452\|457
chr4_3	exon	19491698	19492047	19491698	ID=Msa0633710-mRNA-1:exon:5325;Parent=Msa0633710-mRNA-1
chr4_3	exon	19494263	19494443	19494263	ID=Msa0633710-mRNA-1:exon:5326;Parent=Msa0633710-mRNA-1
chr4_3	exon	19494625	19494684	19494625	ID=Msa0633710-mRNA-1:exon:5327;Parent=Msa0633710-mRNA-1
chr4_3	exon	19495182	19495267	19495182	ID=Msa0633710-mRNA-1:exon:5328;Parent=Msa0633710-mRNA-1
chr4_3	exon	19495346	19495434	19495346	ID=Msa0633710-mRNA-1:exon:5329;Parent=Msa0633710-mRNA-1
chr4_3	exon	19495526	19495580	19495526	ID=Msa0633710-mRNA-1:exon:5330;Parent=Msa0633710-mRNA-1
chr4_3	exon	19495845	19495897	19495845	ID=Msa0633710-mRNA-1:exon:5331;Parent=Msa0633710-mRNA-1
chr4_3	exon	19495995	19496045	19495995	ID=Msa0633710-mRNA-1:exon:5332;Parent=Msa0633710-mRNA-1
chr4_3	exon	19496152	19496200	19496152	ID=Msa0633710-mRNA-1:exon:5333;Parent=Msa0633710-mRNA-1
chr4_3	exon	19496318	19496383	19496318	ID=Msa0633710-mRNA-1:exon:5334;Parent=Msa0633710-mRNA-1
chr4_3	exon	19496467	19496543	19496467	ID=Msa0633710-mRNA-1:exon:5335;Parent=Msa0633710-mRNA-1
chr4_3	exon	19496710	19496938	19496710	ID=Msa0633710-mRNA-1:exon:5336;Parent=Msa0633710-mRNA-1
chr4_3	exon	19497154	19497220	19497154	ID=Msa0633710-mRNA-1:exon:5337;Parent=Msa0633710-mRNA-1
chr4_3	exon	19497375	19497957	19497375	ID=Msa0633710-mRNA-1:exon:5338;Parent=Msa0633710-mRNA-1
chr4_3	five_prime_UTR	19491698	19491867	19491698	ID=Msa0633710-mRNA-1:five_prime_utr;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19491868	19492047	19491868	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19494263	19494443	19494263	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19494625	19494684	19494625	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19495182	19495267	19495182	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19495346	19495434	19495346	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19495526	19495580	19495526	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19495845	19495897	19495845	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19495995	19496045	19495995	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19496152	19496200	19496152	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19496318	19496383	19496318	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19496467	19496543	19496467	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19496710	19496938	19496710	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19497154	19497220	19497154	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	CDS	19497375	19497505	19497375	ID=Msa0633710-mRNA-1:cds;Parent=Msa0633710-mRNA-1
chr4_3	three_prime_UTR	19497506	19497957	19497506	ID=Msa0633710-mRNA-1:three_prime_utr;Parent=Msa0633710-mRNA-1

Gene Sequence

>Msa0633710

ATGTCGGGCACCCAAACTCCTCCCGCCACCGCCGCGCCGGACCAGATCATGCAGCAACGTCAACTCCCTTTCTCCTCCATGAAACCTCCCTTTCTCGCCGCCGGAGATTATCACCGCTTCGCACCTGATCACCGCCGGAATCAAGACCTAGAAACTGAAGCTATCGTTGTTAAAACTCCTCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCAGGTGATAGGATGACTCCTGGATCCACTGCAGCAGCCAATAGTTCTGTTCAGACGCCTGTATCTGGAAAAGCGGGGAAGGGAGGAAAAACCTCTAGGATGACAAAAAGCAACAGAACTGGAACTCAAACCCCTGGCTCAAATATTGGTTCTCCTTCAGGAAATAATCTCACCCCTGCTGGTCCATGTCGATATGACAGCTCATTAGGTCTGTTGACAAAAAAGTTCATCGAGTTAATAAAACAAGCAGAGGATGGTATTCTTGATCTAAATAATGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATTACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAAAAGCTCAAGAACAGAATTCAGTGGAAGGGGCTGGATGTTTCAAAACCAGGGGAGGCCGATGATAGTTTTTCTAGTTTACAGGCGGAAATTGAAAATTTAACAATTGAGGAACGCCGGTTGGATGAACAAATAAGGGATATGCAAGAAAGACTACGGAATCTCAGTGAAGATGAAAATAATGAGAAGATTCTTTTTGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGTACCACTTTGGAAGTACCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGAAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATCCACGGTGTTGATGTTGCATCCAAATTTCCACCCAGTCCAGAAGTTAACAAAGTTAACAAGGATCCATCAACTGTGGTCCCAGAAGATAAAGGGAAGGAAATAGAAGTGCAGAGACAAGATGGTGAAGGGCCTAGTACAGATGTTACCAACAATCACGACTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGATGCTGATTACTGGCTTTTATCTGATGCCGATGTTAGCATAACCGATATGTGGAGAACAGAACCTGGGGTAGAATGGAATGAACTCGAAGCACTTCAAGAAGAATATTGTATGGCTCGTGAGCAAACTACAACCCCAAATCATGCTTCAAATATTGGTGAAGTGCCTTCTACATCCAACACTACTGTAGGATGA

Protein sequence

>Msa0633710

MSGTQTPPATAAPDQIMQQRQLPFSSMKPPFLAAGDYHRFAPDHRRNQDLETEAIVVKTPRKSEAADFEADSGDRMTPGSTAAANSSVQTPVSGKAGKGGKTSRMTKSNRTGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFIELIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSKPGEADDSFSSLQAEIENLTIEERRLDEQIRDMQERLRNLSEDENNEKILFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGVDVASKFPPSPEVNKVNKDPSTVVPEDKGKEIEVQRQDGEGPSTDVTNNHDFVSGIMKIVPSDVASDADYWLLSDADVSITDMWRTEPGVEWNELEALQEEYCMAREQTTTPNHASNIGEVPSTSNTTVG*