Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0633740 | AES82018.2 | 56.557 | 244 | 44 | 4 | 4 | 201 | 1 | 228 | 2.16e-79 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0633740 | sp|P52416|GLGS1_VICFA | 85.714 | 56 | 8 | 0 | 7 | 62 | 358 | 413 | 3.33e-28 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0633740 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0633740 | MtrunA17_Chr4g0077071 | 82.143 | 56 | 10 | 0 | 7 | 62 | 20 | 75 | 6.46e-30 | 105 |
| Msa0633740 | MtrunA17_Chr5g0447341 | 85.714 | 56 | 8 | 0 | 7 | 62 | 365 | 420 | 2.48e-29 | 113 |
| Msa0633740 | MtrunA17_Chr3g0120471 | 80.357 | 56 | 8 | 1 | 7 | 62 | 364 | 416 | 3.27e-25 | 102 |
| Msa0633740 | MtrunA17_Chr4g0057621 | 82.692 | 52 | 9 | 0 | 126 | 177 | 421 | 472 | 3.13e-21 | 90.9 |
| Msa0633740 | MtrunA17_Chr3g0101491 | 79.412 | 34 | 7 | 0 | 17 | 50 | 30 | 63 | 2.04e-12 | 60.8 |
| Msa0633740 | MtrunA17_Chr7g0271011 | 40.385 | 52 | 31 | 0 | 8 | 59 | 387 | 438 | 5.82e-11 | 60.8 |
| Msa0633740 | MtrunA17_Chr3g0141761 | 30.556 | 108 | 60 | 2 | 8 | 111 | 381 | 477 | 7.86e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0633740 | AT5G48300.1 | 80.357 | 56 | 11 | 0 | 7 | 62 | 370 | 425 | 9.76e-28 | 109 |
| Msa0633740 | AT1G05610.2 | 50.000 | 56 | 28 | 0 | 4 | 59 | 327 | 382 | 1.59e-12 | 65.9 |
Find 37 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAATTGCCTCAGGTTTC+AGG | 0.144008 | 4_3:-19801652 | Msa0633740:intron |
| TTCTTTATAAATGCGCTTAA+AGG | 0.162223 | 4_3:+19802499 | None:intergenic |
| CGGCGAAGGATGTGCAATTA+AGG | 0.312575 | 4_3:-19802800 | Msa0633740:intron |
| ACTGCAGCCCGACCACTAAA+TGG | 0.318789 | 4_3:+19802647 | None:intergenic |
| ATACTTGATTCCTGTGGATT+TGG | 0.331965 | 4_3:-19802529 | Msa0633740:CDS |
| GTATTTGGTGCAGAAAATTC+AGG | 0.340118 | 4_3:-19802182 | Msa0633740:intron |
| TTGCAAAATCTTCCATTTAG+TGG | 0.342717 | 4_3:-19802659 | Msa0633740:CDS |
| TCTTTATAAATGCGCTTAAA+GGG | 0.372019 | 4_3:+19802500 | None:intergenic |
| TCATGGCGAAGTAAATTATC+AGG | 0.378324 | 4_3:-19801565 | Msa0633740:CDS |
| GATATCACTGATAGTGTTAT+CGG | 0.390980 | 4_3:-19802820 | Msa0633740:CDS |
| ATGGTTATGTAATAACTTGC+TGG | 0.417836 | 4_3:-19801479 | Msa0633740:CDS |
| AAATTCAGCAAATTACATTC+AGG | 0.419246 | 4_3:-19802598 | Msa0633740:CDS |
| CCCGTTCAAAATTTAGATCA+TGG | 0.431314 | 4_3:-19801582 | Msa0633740:CDS |
| TTGTGCTGGAGAGAAGGAAA+TGG | 0.442377 | 4_3:-19801498 | Msa0633740:CDS |
| CATCTTGGTCATGGTGTCAA+TGG | 0.445049 | 4_3:-19802926 | None:intergenic |
| TAATAACTTGCTGGCAGGAC+AGG | 0.452342 | 4_3:-19801470 | Msa0633740:CDS |
| AAGTAAATTATCAGGACTTA+AGG | 0.452663 | 4_3:-19801557 | Msa0633740:CDS |
| TTGAGATTGTGCTGGAGAGA+AGG | 0.453920 | 4_3:-19801504 | Msa0633740:CDS |
| AAATCTTCCATTTAGTGGTC+GGG | 0.454966 | 4_3:-19802654 | Msa0633740:CDS |
| CAACAACAGCTTGGAGAGCT+AGG | 0.464849 | 4_3:-19801437 | Msa0633740:CDS |
| TATCGCGGTTGAGTGTAAAC+TGG | 0.470469 | 4_3:+19802871 | None:intergenic |
| AAGAGAACCTCTCTAGGGAT+TGG | 0.475653 | 4_3:+19802131 | None:intergenic |
| AAAATCAAGTGTAACTCTGT+TGG | 0.477213 | 4_3:-19801532 | Msa0633740:CDS |
| CTCAGGTTTCAGGAAATAGC+AGG | 0.477309 | 4_3:-19801642 | Msa0633740:intron |
| ATAACAAAGAGAACCTCTCT+AGG | 0.493848 | 4_3:+19802125 | None:intergenic |
| TGGAGAGTTTGAGATTGTGC+TGG | 0.507140 | 4_3:-19801512 | Msa0633740:CDS |
| AAAATCTTCCATTTAGTGGT+CGG | 0.526450 | 4_3:-19802655 | Msa0633740:CDS |
| TTATGTAATAACTTGCTGGC+AGG | 0.557817 | 4_3:-19801475 | Msa0633740:CDS |
| AGGGACTTTACCAAATCCAC+AGG | 0.571697 | 4_3:+19802519 | None:intergenic |
| ACTGATAGTGTTATCGGCGA+AGG | 0.578516 | 4_3:-19802814 | Msa0633740:CDS |
| TAACAAAGAGAACCTCTCTA+GGG | 0.584194 | 4_3:+19802126 | None:intergenic |
| TGCTAATCCAATCCCTAGAG+AGG | 0.591435 | 4_3:-19802138 | Msa0633740:intron |
| ACATCAAGCATCTTCGACGG+AGG | 0.618921 | 4_3:+19802844 | None:intergenic |
| TTTATGATACTTGATTCCTG+TGG | 0.641002 | 4_3:-19802535 | Msa0633740:CDS |
| TCAACATCAAGCATCTTCGA+CGG | 0.656482 | 4_3:+19802841 | None:intergenic |
| TTCGACGGAGGCAAGTATCG+CGG | 0.672054 | 4_3:+19802856 | None:intergenic |
| TCAGGTTTCAGGAAATAGCA+GGG | 0.674198 | 4_3:-19801641 | Msa0633740:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGAATGTAAATTTTTGT+TGG | - | chr4_3:19801864-19801883 | Msa0633740:intron | 15.0% |
| !! | CTTTAGATATGTAAATATAA+TGG | + | chr4_3:19802141-19802160 | None:intergenic | 15.0% |
| !!! | ATATTTACATATCTAAAGTT+TGG | - | chr4_3:19802143-19802162 | Msa0633740:CDS | 15.0% |
| !!! | TAAAGAATGTAAATTTTTGT+TGG | - | chr4_3:19801864-19801883 | Msa0633740:intron | 15.0% |
| !! | CTTTAGATATGTAAATATAA+TGG | + | chr4_3:19802141-19802160 | None:intergenic | 15.0% |
| !!! | ATATTTACATATCTAAAGTT+TGG | - | chr4_3:19802143-19802162 | Msa0633740:CDS | 15.0% |
| !! | AGATGTCAAATATGATTAAA+TGG | - | chr4_3:19801624-19801643 | Msa0633740:CDS | 20.0% |
| !! | TACATGAAAAACTTGATAAA+TGG | - | chr4_3:19801789-19801808 | Msa0633740:intron | 20.0% |
| !!! | CTAACTTTTATAGATCAAAA+AGG | + | chr4_3:19802020-19802039 | None:intergenic | 20.0% |
| !! | AGATGTCAAATATGATTAAA+TGG | - | chr4_3:19801624-19801643 | Msa0633740:CDS | 20.0% |
| !! | TACATGAAAAACTTGATAAA+TGG | - | chr4_3:19801789-19801808 | Msa0633740:intron | 20.0% |
| !!! | CTAACTTTTATAGATCAAAA+AGG | + | chr4_3:19802020-19802039 | None:intergenic | 20.0% |
| ! | AAATTCAGCAAATTACATTC+AGG | - | chr4_3:19801749-19801768 | Msa0633740:intron | 25.0% |
| ! | TCTTTATAAATGCGCTTAAA+GGG | + | chr4_3:19801850-19801869 | None:intergenic | 25.0% |
| ! | TTCTTTATAAATGCGCTTAA+AGG | + | chr4_3:19801851-19801870 | None:intergenic | 25.0% |
| !!! | TAACTTTTTCTTACCACTTT+AGG | - | chr4_3:19801912-19801931 | Msa0633740:intron | 25.0% |
| ! | TTATAGATCAAAAAGGACTA+AGG | + | chr4_3:19802013-19802032 | None:intergenic | 25.0% |
| !! | CATATCTAAAGTTTGGTATT+TGG | - | chr4_3:19802150-19802169 | Msa0633740:CDS | 25.0% |
| !!! | TTGTAATTTTTCAAGAACTC+TGG | + | chr4_3:19802285-19802304 | None:intergenic | 25.0% |
| ! | GAAAAATTACAAATCAAGCT+TGG | - | chr4_3:19802293-19802312 | Msa0633740:intron | 25.0% |
| !!! | TTCTTTATTTCTGTTTCTCA+AGG | + | chr4_3:19802379-19802398 | None:intergenic | 25.0% |
| ! | CAGAAATAAAGAAGAAAATG+TGG | - | chr4_3:19802386-19802405 | Msa0633740:intron | 25.0% |
| !! | CAAATTTGTTTGACACATTA+AGG | + | chr4_3:19802412-19802431 | None:intergenic | 25.0% |
| ! | AAATTTAGCAACAACAGATA+TGG | + | chr4_3:19802533-19802552 | None:intergenic | 25.0% |
| ! | TACCTGAATTATTAGTGATA+TGG | - | chr4_3:19802663-19802682 | Msa0633740:CDS | 25.0% |
| ! | ATCCATATCACTAATAATTC+AGG | + | chr4_3:19802668-19802687 | None:intergenic | 25.0% |
| ! | AAGTAAATTATCAGGACTTA+AGG | - | chr4_3:19802790-19802809 | Msa0633740:intron | 25.0% |
| ! | AAATTCAGCAAATTACATTC+AGG | - | chr4_3:19801749-19801768 | Msa0633740:intron | 25.0% |
| ! | TCTTTATAAATGCGCTTAAA+GGG | + | chr4_3:19801850-19801869 | None:intergenic | 25.0% |
| ! | TTCTTTATAAATGCGCTTAA+AGG | + | chr4_3:19801851-19801870 | None:intergenic | 25.0% |
| !!! | TAACTTTTTCTTACCACTTT+AGG | - | chr4_3:19801912-19801931 | Msa0633740:intron | 25.0% |
| ! | TTATAGATCAAAAAGGACTA+AGG | + | chr4_3:19802013-19802032 | None:intergenic | 25.0% |
| !! | CATATCTAAAGTTTGGTATT+TGG | - | chr4_3:19802150-19802169 | Msa0633740:CDS | 25.0% |
| !!! | TTGTAATTTTTCAAGAACTC+TGG | + | chr4_3:19802285-19802304 | None:intergenic | 25.0% |
| ! | GAAAAATTACAAATCAAGCT+TGG | - | chr4_3:19802293-19802312 | Msa0633740:intron | 25.0% |
| !!! | TTCTTTATTTCTGTTTCTCA+AGG | + | chr4_3:19802379-19802398 | None:intergenic | 25.0% |
| ! | CAGAAATAAAGAAGAAAATG+TGG | - | chr4_3:19802386-19802405 | Msa0633740:intron | 25.0% |
| !! | CAAATTTGTTTGACACATTA+AGG | + | chr4_3:19802412-19802431 | None:intergenic | 25.0% |
| ! | AAATTTAGCAACAACAGATA+TGG | + | chr4_3:19802533-19802552 | None:intergenic | 25.0% |
| ! | TACCTGAATTATTAGTGATA+TGG | - | chr4_3:19802663-19802682 | Msa0633740:CDS | 25.0% |
| ! | ATCCATATCACTAATAATTC+AGG | + | chr4_3:19802668-19802687 | None:intergenic | 25.0% |
| ! | AAGTAAATTATCAGGACTTA+AGG | - | chr4_3:19802790-19802809 | Msa0633740:intron | 25.0% |
| ! | GATATCACTGATAGTGTTAT+CGG | - | chr4_3:19801527-19801546 | Msa0633740:CDS | 30.0% |
| TCACATTCTTCGAACATATT+CGG | + | chr4_3:19801583-19801602 | None:intergenic | 30.0% | |
| ! | ATGGAAGATTTTGCAATTCT+AGG | + | chr4_3:19801684-19801703 | None:intergenic | 30.0% |
| TTGCAAAATCTTCCATTTAG+TGG | - | chr4_3:19801688-19801707 | Msa0633740:intron | 30.0% | |
| AAAATCTTCCATTTAGTGGT+CGG | - | chr4_3:19801692-19801711 | Msa0633740:intron | 30.0% | |
| TTTATGATACTTGATTCCTG+TGG | - | chr4_3:19801812-19801831 | Msa0633740:intron | 30.0% | |
| TGGTAAGAAAAAGTTAGATG+AGG | + | chr4_3:19801908-19801927 | None:intergenic | 30.0% | |
| ! | TTTCTTACCACTTTAGGTTT+AGG | - | chr4_3:19801918-19801937 | Msa0633740:intron | 30.0% |
| TAACAGTACATGTATGTGAA+AGG | + | chr4_3:19802057-19802076 | None:intergenic | 30.0% | |
| !! | GTTCTCTTTGTTATTCAGAA+GGG | - | chr4_3:19802231-19802250 | Msa0633740:intron | 30.0% |
| ! | GAAAAGTGAGATTAGCTAAA+AGG | + | chr4_3:19802355-19802374 | None:intergenic | 30.0% |
| ! | ATGTCATTTAATTCCATGCA+AGG | - | chr4_3:19802496-19802515 | Msa0633740:intron | 30.0% |
| ATTTCATTGCTTCATGAACT+CGG | + | chr4_3:19802575-19802594 | None:intergenic | 30.0% | |
| AGTTCATGAAGCAATGAAAT+TGG | - | chr4_3:19802575-19802594 | Msa0633740:CDS | 30.0% | |
| ! | TTAGACAGTATTTTGCTTTG+AGG | - | chr4_3:19802602-19802621 | Msa0633740:CDS | 30.0% |
| ! | CATGATCTAAATTTTGAACG+GGG | + | chr4_3:19802767-19802786 | None:intergenic | 30.0% |
| ! | CCATGATCTAAATTTTGAAC+GGG | + | chr4_3:19802768-19802787 | None:intergenic | 30.0% |
| ! | GCCATGATCTAAATTTTGAA+CGG | + | chr4_3:19802769-19802788 | None:intergenic | 30.0% |
| AAAATCAAGTGTAACTCTGT+TGG | - | chr4_3:19802815-19802834 | Msa0633740:CDS | 30.0% | |
| ! | ATGGTTATGTAATAACTTGC+TGG | - | chr4_3:19802868-19802887 | Msa0633740:CDS | 30.0% |
| ! | GATATCACTGATAGTGTTAT+CGG | - | chr4_3:19801527-19801546 | Msa0633740:CDS | 30.0% |
| TCACATTCTTCGAACATATT+CGG | + | chr4_3:19801583-19801602 | None:intergenic | 30.0% | |
| ! | ATGGAAGATTTTGCAATTCT+AGG | + | chr4_3:19801684-19801703 | None:intergenic | 30.0% |
| TTGCAAAATCTTCCATTTAG+TGG | - | chr4_3:19801688-19801707 | Msa0633740:intron | 30.0% | |
| AAAATCTTCCATTTAGTGGT+CGG | - | chr4_3:19801692-19801711 | Msa0633740:intron | 30.0% | |
| TTTATGATACTTGATTCCTG+TGG | - | chr4_3:19801812-19801831 | Msa0633740:intron | 30.0% | |
| TGGTAAGAAAAAGTTAGATG+AGG | + | chr4_3:19801908-19801927 | None:intergenic | 30.0% | |
| ! | TTTCTTACCACTTTAGGTTT+AGG | - | chr4_3:19801918-19801937 | Msa0633740:intron | 30.0% |
| TAACAGTACATGTATGTGAA+AGG | + | chr4_3:19802057-19802076 | None:intergenic | 30.0% | |
| !! | GTTCTCTTTGTTATTCAGAA+GGG | - | chr4_3:19802231-19802250 | Msa0633740:intron | 30.0% |
| ! | GAAAAGTGAGATTAGCTAAA+AGG | + | chr4_3:19802355-19802374 | None:intergenic | 30.0% |
| ! | ATGTCATTTAATTCCATGCA+AGG | - | chr4_3:19802496-19802515 | Msa0633740:intron | 30.0% |
| ATTTCATTGCTTCATGAACT+CGG | + | chr4_3:19802575-19802594 | None:intergenic | 30.0% | |
| AGTTCATGAAGCAATGAAAT+TGG | - | chr4_3:19802575-19802594 | Msa0633740:CDS | 30.0% | |
| ! | TTAGACAGTATTTTGCTTTG+AGG | - | chr4_3:19802602-19802621 | Msa0633740:CDS | 30.0% |
| ! | CATGATCTAAATTTTGAACG+GGG | + | chr4_3:19802767-19802786 | None:intergenic | 30.0% |
| ! | CCATGATCTAAATTTTGAAC+GGG | + | chr4_3:19802768-19802787 | None:intergenic | 30.0% |
| ! | GCCATGATCTAAATTTTGAA+CGG | + | chr4_3:19802769-19802788 | None:intergenic | 30.0% |
| AAAATCAAGTGTAACTCTGT+TGG | - | chr4_3:19802815-19802834 | Msa0633740:CDS | 30.0% | |
| ! | ATGGTTATGTAATAACTTGC+TGG | - | chr4_3:19802868-19802887 | Msa0633740:CDS | 30.0% |
| AAATCTTCCATTTAGTGGTC+GGG | - | chr4_3:19801693-19801712 | Msa0633740:intron | 35.0% | |
| ATACTTGATTCCTGTGGATT+TGG | - | chr4_3:19801818-19801837 | Msa0633740:intron | 35.0% | |
| TTGTTGGATATTTCTTCAGC+TGG | - | chr4_3:19801880-19801899 | Msa0633740:intron | 35.0% | |
| TATGGATCCTAAACCTAAAG+TGG | + | chr4_3:19801928-19801947 | None:intergenic | 35.0% | |
| ATGACAGATTAAGGCTCATA+TGG | + | chr4_3:19801946-19801965 | None:intergenic | 35.0% | |
| CAATGCAGTATGACAGATTA+AGG | + | chr4_3:19801955-19801974 | None:intergenic | 35.0% | |
| CTTAATCTGTCATACTGCAT+TGG | - | chr4_3:19801953-19801972 | Msa0633740:intron | 35.0% | |
| ACATACATGTACTGTTAGCT+AGG | - | chr4_3:19802060-19802079 | Msa0633740:intron | 35.0% | |
| ACTGTTAGCTAGGTCATTTA+TGG | - | chr4_3:19802070-19802089 | Msa0633740:intron | 35.0% | |
| !! | GTATTTGGTGCAGAAAATTC+AGG | - | chr4_3:19802165-19802184 | Msa0633740:CDS | 35.0% |
| TAACAAAGAGAACCTCTCTA+GGG | + | chr4_3:19802224-19802243 | None:intergenic | 35.0% | |
| ATAACAAAGAGAACCTCTCT+AGG | + | chr4_3:19802225-19802244 | None:intergenic | 35.0% | |
| !! | GGTTCTCTTTGTTATTCAGA+AGG | - | chr4_3:19802230-19802249 | Msa0633740:intron | 35.0% |
| ! | AAACCATATGCATTTTCTCC+TGG | - | chr4_3:19802255-19802274 | Msa0633740:intron | 35.0% |
| CCCGTTCAAAATTTAGATCA+TGG | - | chr4_3:19802765-19802784 | Msa0633740:intron | 35.0% | |
| TCATGGCGAAGTAAATTATC+AGG | - | chr4_3:19802782-19802801 | Msa0633740:intron | 35.0% | |
| !! | TTATGTAATAACTTGCTGGC+AGG | - | chr4_3:19802872-19802891 | Msa0633740:CDS | 35.0% |
| !!! | CTTTGTTTTCAACAACAGCT+TGG | - | chr4_3:19802901-19802920 | Msa0633740:CDS | 35.0% |
| AAATCTTCCATTTAGTGGTC+GGG | - | chr4_3:19801693-19801712 | Msa0633740:intron | 35.0% | |
| ATACTTGATTCCTGTGGATT+TGG | - | chr4_3:19801818-19801837 | Msa0633740:intron | 35.0% | |
| TTGTTGGATATTTCTTCAGC+TGG | - | chr4_3:19801880-19801899 | Msa0633740:intron | 35.0% | |
| TATGGATCCTAAACCTAAAG+TGG | + | chr4_3:19801928-19801947 | None:intergenic | 35.0% | |
| ATGACAGATTAAGGCTCATA+TGG | + | chr4_3:19801946-19801965 | None:intergenic | 35.0% | |
| CAATGCAGTATGACAGATTA+AGG | + | chr4_3:19801955-19801974 | None:intergenic | 35.0% | |
| CTTAATCTGTCATACTGCAT+TGG | - | chr4_3:19801953-19801972 | Msa0633740:intron | 35.0% | |
| ACATACATGTACTGTTAGCT+AGG | - | chr4_3:19802060-19802079 | Msa0633740:intron | 35.0% | |
| ACTGTTAGCTAGGTCATTTA+TGG | - | chr4_3:19802070-19802089 | Msa0633740:intron | 35.0% | |
| !! | GTATTTGGTGCAGAAAATTC+AGG | - | chr4_3:19802165-19802184 | Msa0633740:CDS | 35.0% |
| TAACAAAGAGAACCTCTCTA+GGG | + | chr4_3:19802224-19802243 | None:intergenic | 35.0% | |
| ATAACAAAGAGAACCTCTCT+AGG | + | chr4_3:19802225-19802244 | None:intergenic | 35.0% | |
| !! | GGTTCTCTTTGTTATTCAGA+AGG | - | chr4_3:19802230-19802249 | Msa0633740:intron | 35.0% |
| ! | AAACCATATGCATTTTCTCC+TGG | - | chr4_3:19802255-19802274 | Msa0633740:intron | 35.0% |
| CCCGTTCAAAATTTAGATCA+TGG | - | chr4_3:19802765-19802784 | Msa0633740:intron | 35.0% | |
| TCATGGCGAAGTAAATTATC+AGG | - | chr4_3:19802782-19802801 | Msa0633740:intron | 35.0% | |
| !! | TTATGTAATAACTTGCTGGC+AGG | - | chr4_3:19802872-19802891 | Msa0633740:CDS | 35.0% |
| !!! | CTTTGTTTTCAACAACAGCT+TGG | - | chr4_3:19802901-19802920 | Msa0633740:CDS | 35.0% |
| TCAACATCAAGCATCTTCGA+CGG | + | chr4_3:19801509-19801528 | None:intergenic | 40.0% | |
| !! | GTCATACTGCATTGGTTTCT+TGG | - | chr4_3:19801961-19801980 | Msa0633740:intron | 40.0% |
| AAAAGGACTAAGGATTGCCT+CGG | + | chr4_3:19802003-19802022 | None:intergenic | 40.0% | |
| CAGTACATGTATGTGAAAGG+TGG | + | chr4_3:19802054-19802073 | None:intergenic | 40.0% | |
| GTCATTTATGGTCATGCTTG+TGG | - | chr4_3:19802082-19802101 | Msa0633740:intron | 40.0% | |
| CTTCCAGGAGAAAATGCATA+TGG | + | chr4_3:19802261-19802280 | None:intergenic | 40.0% | |
| CAAATCAAGCTTGGAGTTCT+TGG | - | chr4_3:19802302-19802321 | Msa0633740:intron | 40.0% | |
| GAGTTCTTGGCTTATCTAGA+AGG | - | chr4_3:19802315-19802334 | Msa0633740:intron | 40.0% | |
| CTCATATCTTCAATTGCCTC+AGG | - | chr4_3:19802688-19802707 | Msa0633740:intron | 40.0% | |
| TCAGGTTTCAGGAAATAGCA+GGG | - | chr4_3:19802706-19802725 | Msa0633740:intron | 40.0% | |
| ! | ATTTTGAACGGGGACAAGAT+TGG | + | chr4_3:19802757-19802776 | None:intergenic | 40.0% |
| TCAACATCAAGCATCTTCGA+CGG | + | chr4_3:19801509-19801528 | None:intergenic | 40.0% | |
| !! | GTCATACTGCATTGGTTTCT+TGG | - | chr4_3:19801961-19801980 | Msa0633740:intron | 40.0% |
| AAAAGGACTAAGGATTGCCT+CGG | + | chr4_3:19802003-19802022 | None:intergenic | 40.0% | |
| CAGTACATGTATGTGAAAGG+TGG | + | chr4_3:19802054-19802073 | None:intergenic | 40.0% | |
| GTCATTTATGGTCATGCTTG+TGG | - | chr4_3:19802082-19802101 | Msa0633740:intron | 40.0% | |
| CTTCCAGGAGAAAATGCATA+TGG | + | chr4_3:19802261-19802280 | None:intergenic | 40.0% | |
| CAAATCAAGCTTGGAGTTCT+TGG | - | chr4_3:19802302-19802321 | Msa0633740:intron | 40.0% | |
| GAGTTCTTGGCTTATCTAGA+AGG | - | chr4_3:19802315-19802334 | Msa0633740:intron | 40.0% | |
| CTCATATCTTCAATTGCCTC+AGG | - | chr4_3:19802688-19802707 | Msa0633740:intron | 40.0% | |
| TCAGGTTTCAGGAAATAGCA+GGG | - | chr4_3:19802706-19802725 | Msa0633740:intron | 40.0% | |
| ! | ATTTTGAACGGGGACAAGAT+TGG | + | chr4_3:19802757-19802776 | None:intergenic | 40.0% |
| TATCGCGGTTGAGTGTAAAC+TGG | + | chr4_3:19801479-19801498 | None:intergenic | 45.0% | |
| ! | ACTGATAGTGTTATCGGCGA+AGG | - | chr4_3:19801533-19801552 | Msa0633740:CDS | 45.0% |
| AGGGACTTTACCAAATCCAC+AGG | + | chr4_3:19801831-19801850 | None:intergenic | 45.0% | |
| TGCTAATCCAATCCCTAGAG+AGG | - | chr4_3:19802209-19802228 | Msa0633740:intron | 45.0% | |
| ! | AAGAGAACCTCTCTAGGGAT+TGG | + | chr4_3:19802219-19802238 | None:intergenic | 45.0% |
| ! | TTCAAGAACTCTGGTCTTCC+AGG | + | chr4_3:19802276-19802295 | None:intergenic | 45.0% |
| CTTCAATTGCCTCAGGTTTC+AGG | - | chr4_3:19802695-19802714 | Msa0633740:intron | 45.0% | |
| !! | CTGCTATTTCCTGAAACCTG+AGG | + | chr4_3:19802707-19802726 | None:intergenic | 45.0% |
| CTCAGGTTTCAGGAAATAGC+AGG | - | chr4_3:19802705-19802724 | Msa0633740:intron | 45.0% | |
| ! | TGGAGAGTTTGAGATTGTGC+TGG | - | chr4_3:19802835-19802854 | Msa0633740:CDS | 45.0% |
| TTGAGATTGTGCTGGAGAGA+AGG | - | chr4_3:19802843-19802862 | Msa0633740:CDS | 45.0% | |
| TTGTGCTGGAGAGAAGGAAA+TGG | - | chr4_3:19802849-19802868 | Msa0633740:CDS | 45.0% | |
| !! | TAATAACTTGCTGGCAGGAC+AGG | - | chr4_3:19802877-19802896 | Msa0633740:CDS | 45.0% |
| TATCGCGGTTGAGTGTAAAC+TGG | + | chr4_3:19801479-19801498 | None:intergenic | 45.0% | |
| ! | ACTGATAGTGTTATCGGCGA+AGG | - | chr4_3:19801533-19801552 | Msa0633740:CDS | 45.0% |
| AGGGACTTTACCAAATCCAC+AGG | + | chr4_3:19801831-19801850 | None:intergenic | 45.0% | |
| TGCTAATCCAATCCCTAGAG+AGG | - | chr4_3:19802209-19802228 | Msa0633740:intron | 45.0% | |
| ! | AAGAGAACCTCTCTAGGGAT+TGG | + | chr4_3:19802219-19802238 | None:intergenic | 45.0% |
| ! | TTCAAGAACTCTGGTCTTCC+AGG | + | chr4_3:19802276-19802295 | None:intergenic | 45.0% |
| CTTCAATTGCCTCAGGTTTC+AGG | - | chr4_3:19802695-19802714 | Msa0633740:intron | 45.0% | |
| !! | CTGCTATTTCCTGAAACCTG+AGG | + | chr4_3:19802707-19802726 | None:intergenic | 45.0% |
| CTCAGGTTTCAGGAAATAGC+AGG | - | chr4_3:19802705-19802724 | Msa0633740:intron | 45.0% | |
| ! | TGGAGAGTTTGAGATTGTGC+TGG | - | chr4_3:19802835-19802854 | Msa0633740:CDS | 45.0% |
| TTGAGATTGTGCTGGAGAGA+AGG | - | chr4_3:19802843-19802862 | Msa0633740:CDS | 45.0% | |
| TTGTGCTGGAGAGAAGGAAA+TGG | - | chr4_3:19802849-19802868 | Msa0633740:CDS | 45.0% | |
| !! | TAATAACTTGCTGGCAGGAC+AGG | - | chr4_3:19802877-19802896 | Msa0633740:CDS | 45.0% |
| ACATCAAGCATCTTCGACGG+AGG | + | chr4_3:19801506-19801525 | None:intergenic | 50.0% | |
| CGGCGAAGGATGTGCAATTA+AGG | - | chr4_3:19801547-19801566 | Msa0633740:CDS | 50.0% | |
| GACCATGTCAGTACTTACCG+AGG | - | chr4_3:19801983-19802002 | Msa0633740:intron | 50.0% | |
| !! | TGCCTCGGTAAGTACTGACA+TGG | + | chr4_3:19801988-19802007 | None:intergenic | 50.0% |
| ! | GGACGTATAGTAGCCTTGCA+TGG | + | chr4_3:19802512-19802531 | None:intergenic | 50.0% |
| CAACAACAGCTTGGAGAGCT+AGG | - | chr4_3:19802910-19802929 | Msa0633740:CDS | 50.0% | |
| ACATCAAGCATCTTCGACGG+AGG | + | chr4_3:19801506-19801525 | None:intergenic | 50.0% | |
| CGGCGAAGGATGTGCAATTA+AGG | - | chr4_3:19801547-19801566 | Msa0633740:CDS | 50.0% | |
| GACCATGTCAGTACTTACCG+AGG | - | chr4_3:19801983-19802002 | Msa0633740:intron | 50.0% | |
| !! | TGCCTCGGTAAGTACTGACA+TGG | + | chr4_3:19801988-19802007 | None:intergenic | 50.0% |
| ! | GGACGTATAGTAGCCTTGCA+TGG | + | chr4_3:19802512-19802531 | None:intergenic | 50.0% |
| CAACAACAGCTTGGAGAGCT+AGG | - | chr4_3:19802910-19802929 | Msa0633740:CDS | 50.0% | |
| ! | TTCGACGGAGGCAAGTATCG+CGG | + | chr4_3:19801494-19801513 | None:intergenic | 55.0% |
| ACTGCAGCCCGACCACTAAA+TGG | + | chr4_3:19801703-19801722 | None:intergenic | 55.0% | |
| ! | TTCGACGGAGGCAAGTATCG+CGG | + | chr4_3:19801494-19801513 | None:intergenic | 55.0% |
| ACTGCAGCCCGACCACTAAA+TGG | + | chr4_3:19801703-19801722 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 19801431 | 19802938 | 19801431 | ID=Msa0633740;Name=Msa0633740 |
| chr4_3 | mRNA | 19801431 | 19802938 | 19801431 | ID=Msa0633740-mRNA-1;Parent=Msa0633740;Name=Msa0633740-mRNA-1;_AED=0.26;_eAED=0.27;_QI=0|0|0|1|0.33|0.25|4|0|201 |
| chr4_3 | exon | 19802801 | 19802938 | 19802801 | ID=Msa0633740-mRNA-1:exon:5355;Parent=Msa0633740-mRNA-1 |
| chr4_3 | exon | 19802498 | 19802683 | 19802498 | ID=Msa0633740-mRNA-1:exon:5354;Parent=Msa0633740-mRNA-1 |
| chr4_3 | exon | 19802139 | 19802191 | 19802139 | ID=Msa0633740-mRNA-1:exon:5353;Parent=Msa0633740-mRNA-1 |
| chr4_3 | exon | 19801431 | 19801659 | 19801431 | ID=Msa0633740-mRNA-1:exon:5352;Parent=Msa0633740-mRNA-1 |
| chr4_3 | CDS | 19802801 | 19802938 | 19802801 | ID=Msa0633740-mRNA-1:cds;Parent=Msa0633740-mRNA-1 |
| chr4_3 | CDS | 19802498 | 19802683 | 19802498 | ID=Msa0633740-mRNA-1:cds;Parent=Msa0633740-mRNA-1 |
| chr4_3 | CDS | 19802139 | 19802191 | 19802139 | ID=Msa0633740-mRNA-1:cds;Parent=Msa0633740-mRNA-1 |
| chr4_3 | CDS | 19801431 | 19801659 | 19801431 | ID=Msa0633740-mRNA-1:cds;Parent=Msa0633740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
