AlfalfaGEDB | Msa0633930

M. sativa cultivar zhongmu-4 / Msa0633930

KEGG: K12236
GO: GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141
PFAM: PF01422.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633930	XP_003605239.1	90.431	1045	66	2	54	1098	1	1011	0.0	1888

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633930	sp\|Q9SY59\|NFXL1_ARATH	61.015	985	343	12	78	1031	201	1175	0.0	1204

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0633930	TF	NF-X1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633930	MtrunA17_Chr4g0012511	90.431	1045	66	2	54	1098	1	1011	0.0	1888
Msa0633930	MtrunA17_Chr6g0479161	67.968	999	284	12	77	1050	180	1167	0.0	1337
Msa0633930	MtrunA17_Chr3g0113591	34.036	664	299	26	86	659	60	674	4.87e-83	289

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633930	AT1G10170.4	61.015	985	343	12	78	1031	201	1175	0.0	1206
Msa0633930	AT1G10170.1	61.015	985	343	12	78	1031	201	1175	0.0	1204
Msa0633930	AT1G10170.3	61.015	985	343	12	78	1031	201	1175	0.0	1204
Msa0633930	AT1G10170.2	61.015	985	343	12	78	1031	129	1103	0.0	1203
Msa0633930	AT5G05660.1	34.347	658	302	26	86	659	70	681	3.24e-81	285
Msa0633930	AT5G05660.1	28.671	429	210	20	201	544	306	723	4.32e-17	87.4

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Find 303 sgRNAs with CRISPR-Local

Find 524 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAGGTTGGGCGAGGAA+CGG	0.552198	4_3:+20337575	Msa0633930:CDS
AAACTTGCACCTCTCCTCGA+CGG	0.640734	4_3:-20338790	None:intergenic
AAATAATATTCTAAATGCAA+CGG	0.574868	4_3:+20337876	Msa0633930:CDS
AAATTTCTTTGGCTCCCGAC+CGG	0.518690	4_3:-20338940	None:intergenic
AACATTGATTGGCGCTGCCC+TGG	0.458005	4_3:+20336953	Msa0633930:CDS
AACCACCCTCAACTACCGAC+CGG	0.598578	4_3:+20336747	Msa0633930:CDS
AACCGGTCGGTAGTTGAGGG+TGG	0.625604	4_3:-20336749	None:intergenic
AACGTCCCTTGTGATGCTGG+TGG	0.746682	4_3:+20338495	Msa0633930:CDS
AACTAGTGCATGACCATATA+GGG	0.252374	4_3:-20336862	None:intergenic
AAGAATGAGAATTTGAGAAA+TGG	0.394869	4_3:-20334613	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAGAATTTGAGAAATGG+GGG	-	chr4_3:20334613-20334632	None:intergenic	30.0%
GAATGAGAATTTGAGAAATG+GGG	-	chr4_3:20334614-20334633	None:intergenic	30.0%
CATGGAAAGAGAAAACAAAA+CGG	-	chr4_3:20335670-20335689	None:intergenic	30.0%
GTTAGCAAGGTTTCAAAAAA+CGG	-	chr4_3:20335995-20336014	None:intergenic	30.0%
GAAGCAAGCAAATATTTGTA+AGG	-	chr4_3:20336158-20336177	None:intergenic	30.0%
AGATTTAGTAATAGTTTGGG+TGG	+	chr4_3:20336293-20336312	Msa0633930:intron	30.0%
TAATAGTAATCTTGCCACAA+GGG	-	chr4_3:20337204-20337223	None:intergenic	30.0%
ATATTCTAAATGCAACGGAT+TGG	+	chr4_3:20337881-20337900	Msa0633930:CDS	30.0%
ATATAGTTTCAAGACAAGGT+GGG	-	chr4_3:20337993-20338012	None:intergenic	30.0%
AATATAGTTTCAAGACAAGG+TGG	-	chr4_3:20337994-20338013	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	20334554	20341815	20334554	ID=Msa0633930;Name=Msa0633930
chr4_3	mRNA	20334554	20341815	20334554	ID=Msa0633930-mRNA-1;Parent=Msa0633930;Name=Msa0633930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0.5\|0\|1\|1\|1\|3\|0\|1098
chr4_3	exon	20334554	20334689	20334554	ID=Msa0633930-mRNA-1:exon:5422;Parent=Msa0633930-mRNA-1
chr4_3	exon	20336666	20339635	20336666	ID=Msa0633930-mRNA-1:exon:5423;Parent=Msa0633930-mRNA-1
chr4_3	exon	20341625	20341815	20341625	ID=Msa0633930-mRNA-1:exon:5424;Parent=Msa0633930-mRNA-1
chr4_3	CDS	20334554	20334689	20334554	ID=Msa0633930-mRNA-1:cds;Parent=Msa0633930-mRNA-1
chr4_3	CDS	20336666	20339635	20336666	ID=Msa0633930-mRNA-1:cds;Parent=Msa0633930-mRNA-1
chr4_3	CDS	20341625	20341815	20341625	ID=Msa0633930-mRNA-1:cds;Parent=Msa0633930-mRNA-1

Gene Sequence

>Msa0633930

TCCATTGCTCACTCTCATTCTTCATTCCACAGGAGAGTGGGTTTCTCTTCTTTACACCCCCATTTCTCAAATTCTCATTCTTTCTTTCTCACATTTTACTCTTCAACCAACATTCTTCCTTCCTCCTATCAATCAGTTACAGAAGAATCACTCCCACTTATGAGCTTCCAACAGAGGGAAATTAGGAATCCTCGTCGTCGTCAGCAATGGATTCCCAAACCACCCTCAACTACCGACCGGTTATTACCTCAACTTCTGCAAGAGATTCAGGACAAGCTCACCAAAGGCACCGTCGAATGCATGATTTGCTACGACACTGTCCGCAGATCTTCCCCTATATGGTCATGCACTAGTTGCTACTCCATCTTTCACCTCAATTGTACAACCAAGTGGGCTCGTGCACCCACTTCATCTTCCCAAACTAACATTGATTGGCGCTGCCCTGGCTGTCAATCTGTGCAACTCACCTCATCCAATTCCATCAGGTACTTCTGCTTTTGTGGGAAGACGCCCGACCCTCCATCAGACTTTTATCTCACGCCGCATTCATGTGGAGAACCTTGTGGGAAGCCTCTTCAGAAGACGGGGGATAATTGCCCTCATGTTTGTGTCTTGCAATGTCATCCTGGTCCATGTCCTCCTTGCAAAGCATTTGCCCCTCCTCGTTTGTGCCCTTGTGGCAAGATTACTATTACCACTCGTTGTTCTGATGACCAATCTCTTATTACCTGTGGACAACAATGTCAAAAGCTTCTACAATGTGGGCGTCATCGCTGTCACCAAATTTGTCATCTCGGTCCTTGTGATCCATGTCGTGTTCCAATGGACGCCTCTTGCTTTTGCAAGAAAAGTTTGGAGGTTATACTTTGTGGGGACATGGCTGTAAAGGGTGAATACAAAGCAGAAGATGGAGTTTTTTCCTGTGGTTCCACATGTGGAAACAAACTTGCATGTGGTAATCACATATGTATTGAGAACTGTCATCCGGGAAGTTGTGTTGAGTGTCCCTTGTTACCAACCAATGTTAAGACATGCTTCTGCGGGAAAACTAGGTTGGGCGAGGAACGGCTGAGTTGTTTAGACCCAATTCCTACATGTTCACAAGTATGTGGCAAGTCTCTTCCTTGCGGGTTGCATCATTGTAAAATGACATGCCATGATGGGAATTGTTCTCCTTGTTCAGTTTTAGTCTCCCAGAAGTGTCGGTGTGGCTCAACTTCCAAAAGTGTGGAGTGTTGTAAGAAAACAATGGCGAATGAGACATTTACTTGTGAAAAGCCTTGTGGGAAGAAAAAGAATTGTGGAAGGCATCGTTGTAGTGAACGGTGTTGTCCACTCTCTAATCCAAATAATATTCTAAATGCAACGGATTGGAATCCGCATCTCTGTTCCATTCCTTGTGGAAAGAAGCTACGTTGTGGGAAGCATGCGTGTGATTCCAATTGTCACAGTGGTCATTGCCCACCTTGTCTTGAAACTATATTCACTGATTTGACATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTGCCATGTGGTACACCGTCGCCTTCATGTCAACTTCCATGTTCAGTTCCTCAACCTTGTGGCCATCCAGCATCCCATAGTTGTCATCATGGAGATTGCCCTCCCTGTGTGGCTCCTGTAGCAAGAGAATGTGTTGGTGGGCATGTAGTTCTTAGGAACATACCATGTAGCTCAAGGGATATAAGATGTAATAAGCTCTGTGGAAAGACCAAACAGTGCGGTTTACATGCTTGTAGCAGAATATGTCACTCCTCACCTTGTGATAATCAGCCTGTTGTGCAAGGTATTCGAACTTCATGTGGGCAATCATGTGGCGCTCCGAGGAGAGACTGCCGACATACATGCACAGCTCCTTGTCACCCTTCATCTCCATGTCCAGATAGAAGATGTGGATTCGCTGTCACAATCACTTGTACCTGTGGTCGTTTAACAACAAACGTCCCTTGTGATGCTGGTGGTAGTGGTGTTGATTCTATGCATGAAGCTTCTATTATTCAAAAGTTGCTTGTGCCACTTCAACCATTGGATGCAAATGGCAAAAAAGTTCCCCTTGGACAGCGAAAACTGATGTGTAATGATGAGTGCGCTAAGTTGGAGCGTAAAAGGGTTCTTGCAAATGCTTTTGAGATTAGCACTCCAAATCTAGATTCTTTCCAATTTGGTGAGAACTCTGTTGCTCATTCTGAATTACTTGCTGATTTATTGAGGCGTGATAGTAAATGGGTTTTGTCCGTCGAGGAGAGGTGCAAGTTTTTAGTACTTGGCAAGGGTAAAGGAACTACACATGGTCTAAAATCCCATGTTTTCTGTCCCATGCTAAAGGATAAGAGAGATGCTGTGAGGATGATTGCTGATAGATGGAAGCTTGCAATAAATGAAGCCGGTCGGGAGCCAAAGAAATTTATAGTTGTTCATGTTGTCCAAAAATCAAGAGCTCCATCACGCGTGCTAGGGATTAAGGGTACTACAACCGTACCTTCTCTCCTTCCTCCTGCATTTAATTCTTTAGTAGACATGGGCCCTCGATTTGTCGTCTCTTTTCCAGACTTACCAAGAGATGCAAATATCAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGCGAACTTGTTTGGTTAAATGATAAAAATGCATTGGCTGTTTTTAACGATCCTGCCCGAGCTGCAACTGCAATGAGAAGGTTGGATCATGGAAGTGTTTATCAGGGAGCTACTGTGGCTGTTCCGAACACAGGAACATCTGTAGCATCTTCAGTTACAAATGACCGGGGAGGAGCAGGGATAGTGAAAGGCGGTGGTGCGCTGACACCATCGACAGGTTATACGTGGAAAAAGGCTGTTATTGTAGAACCAGCTTGTAGAAAAGATTCTTGGGATGATCAAGAGGGGACTACTGATTGTGCAAATATTCAATCATCTATATGGAAGAAAGAAACAACAATTACTACTTCATCAAATCCTTGGACTGTCTTAAATCAAGAAGGGTCTTCAAGTTCATCTGCTAAAGCTTCTGTTAAAGCTGACACTTCTATCAAACAAACTGAAAGTAGCGTTGTGGCAAAGTCAGAATCTTGTGATGAAGGGTCTTCAAGTTCATCTGCTAAAGCTTCTGTTAAAGCTGACACTTCTATCAAACAAACTGAAAGTAGCGTTGTGGCAAAGTCAGAATCTTGTGATGGTGGTTCAAATCTAGAACACAAGCATGGAAGAGCATTTCACACTTTGGAAGTTTATGATGTAGTAGATGATTGGGAGACAGCTTGTGAATGA

Protein sequence

>Msa0633930

SIAHSHSSFHRRVGFSSLHPHFSNSHSFFLTFYSSTNILPSSYQSVTEESLPLMSFQQREIRNPRRRQQWIPKPPSTTDRLLPQLLQEIQDKLTKGTVECMICYDTVRRSSPIWSCTSCYSIFHLNCTTKWARAPTSSSQTNIDWRCPGCQSVQLTSSNSIRYFCFCGKTPDPPSDFYLTPHSCGEPCGKPLQKTGDNCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKITITTRCSDDQSLITCGQQCQKLLQCGRHRCHQICHLGPCDPCRVPMDASCFCKKSLEVILCGDMAVKGEYKAEDGVFSCGSTCGNKLACGNHICIENCHPGSCVECPLLPTNVKTCFCGKTRLGEERLSCLDPIPTCSQVCGKSLPCGLHHCKMTCHDGNCSPCSVLVSQKCRCGSTSKSVECCKKTMANETFTCEKPCGKKKNCGRHRCSERCCPLSNPNNILNATDWNPHLCSIPCGKKLRCGKHACDSNCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPSPSCQLPCSVPQPCGHPASHSCHHGDCPPCVAPVARECVGGHVVLRNIPCSSRDIRCNKLCGKTKQCGLHACSRICHSSPCDNQPVVQGIRTSCGQSCGAPRRDCRHTCTAPCHPSSPCPDRRCGFAVTITCTCGRLTTNVPCDAGGSGVDSMHEASIIQKLLVPLQPLDANGKKVPLGQRKLMCNDECAKLERKRVLANAFEISTPNLDSFQFGENSVAHSELLADLLRRDSKWVLSVEERCKFLVLGKGKGTTHGLKSHVFCPMLKDKRDAVRMIADRWKLAINEAGREPKKFIVVHVVQKSRAPSRVLGIKGTTTVPSLLPPAFNSLVDMGPRFVVSFPDLPRDANISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGSVYQGATVAVPNTGTSVASSVTNDRGGAGIVKGGGALTPSTGYTWKKAVIVEPACRKDSWDDQEGTTDCANIQSSIWKKETTITTSSNPWTVLNQEGSSSSSAKASVKADTSIKQTESSVVAKSESCDEGSSSSSAKASVKADTSIKQTESSVVAKSESCDGGSNLEHKHGRAFHTLEVYDVVDDWETACE*