AlfalfaGEDB | Msa0634560

M. sativa cultivar zhongmu-4 / Msa0634560

KEGG: K14509
GO: GO:0000160 GO:0001101 GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009308 GO:0009408 GO:0009593 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009651 GO:0009690 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009733 GO:0009737 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010104 GO:0010105 GO:0010119 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016999 GO:0017000 GO:0017144 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034754 GO:0035556 GO:0036211 GO:0038023 GO:0038199 GO:0042221 GO:0042445 GO:0042545 GO:0042562 GO:0042742 GO:0042743 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050665 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051239 GO:0051301 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0051740 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0072328 GO:0072593 GO:0097305 GO:0098542 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1903409 GO:2000026
PFAM: PF01590.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0634560	AES87618.2	98.381	741	12	0	1	741	50	790	0.0	1504

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0634560	sp\|O81122\|ETR1_MALDO	83.941	741	118	1	2	741	1	741	0.0	1295

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0634560	TR	Others

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0634560	MtrunA17_Chr4g0013831	98.381	741	12	0	1	741	1	741	0.0	1502
Msa0634560	MtrunA17_Chr7g0269631	73.280	625	163	2	1	623	1	623	0.0	900
Msa0634560	MtrunA17_Chr1g0186431	41.689	746	406	18	5	739	29	756	2.78e-174	518
Msa0634560	MtrunA17_Chr7g0274831	39.519	749	412	16	5	734	34	760	1.33e-163	491
Msa0634560	MtrunA17_Chr1g0190021	38.235	748	430	18	3	734	26	757	6.49e-156	471
Msa0634560	MtrunA17_Chr1g0168161	37.281	743	444	13	5	735	28	760	5.50e-150	456
Msa0634560	MtrunA17_Chr3g0122391	28.177	362	213	6	335	655	431	786	1.94e-34	141
Msa0634560	MtrunA17_Chr3g0122391	33.884	121	72	3	612	724	896	1016	7.95e-12	68.9
Msa0634560	MtrunA17_Chr8g0377481	28.883	367	216	8	335	663	383	742	8.99e-34	139
Msa0634560	MtrunA17_Chr8g0377481	31.081	148	85	5	593	724	813	959	2.19e-12	70.9

Showing 1 to 10 of 17 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0634560	AT1G66340.1	79.730	740	144	3	2	739	1	736	0.0	1207
Msa0634560	AT2G40940.1	70.220	591	176	0	2	592	1	591	0.0	845
Msa0634560	AT3G23150.1	38.421	760	411	18	5	732	32	766	8.15e-150	456
Msa0634560	AT3G04580.2	38.255	745	437	16	4	733	26	762	4.08e-149	454
Msa0634560	AT3G04580.1	38.255	745	437	16	4	733	26	762	4.08e-149	454
Msa0634560	AT3G23150.2	44.720	483	248	8	5	480	32	502	4.18e-125	386
Msa0634560	AT1G04310.1	39.165	503	281	9	5	492	34	526	2.55e-97	315
Msa0634560	AT1G04310.2	39.165	503	281	9	5	492	34	526	2.55e-97	315
Msa0634560	AT5G10720.1	33.449	287	165	8	323	590	339	618	4.05e-37	150
Msa0634560	AT1G27320.1	26.350	463	292	10	304	728	410	861	1.26e-33	139

Showing 1 to 10 of 20 entries

Previous1 2Next

Find 180 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGACCCTTGTTGAACT+CGG	0.590308	4_3:+21885124	Msa0634560:CDS
AAAGAGAACTGTTTGAGAGC+TGG	0.562595	4_3:+21887943	Msa0634560:CDS
AAAGGAACGAATAGTGTTGC+AGG	0.436853	4_3:-21883541	None:intergenic
AAAGGTGTAAAGGAAGCCCT+AGG	0.617921	4_3:+21888166	Msa0634560:three_prime_UTR
AAATAAAAGTGGCTATCACT+TGG	0.546436	4_3:-21886371	None:intergenic
AAATAGTAAAGTAATGCATG+TGG	0.667110	4_3:-21883450	None:intergenic
AAATCATCTGCTGGCCATTG+TGG	0.550408	4_3:-21884659	None:intergenic
AAATTAGAAAGATTTAGGAG+AGG	0.591308	4_3:-21885391	None:intergenic
AACAAAGCACTCACATAAAA+AGG	0.294642	4_3:+21888148	Msa0634560:three_prime_UTR
AACTAGAAGCTATGCTTTGA+TGG	0.293229	4_3:+21885441	Msa0634560:CDS

Showing 1 to 10 of 180 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTATACAATTAAAGAGGAGG+TGG	-	chr4_3:21883708-21883727	None:intergenic	30.0%
GTTAATAATAGACACTGTGT+TGG	+	chr4_3:21884049-21884068	Msa0634560:intron	30.0%
ATTTCTATGGTAGTTCTTTG+TGG	+	chr4_3:21884109-21884128	Msa0634560:intron	30.0%
ACTAAAACTCGTTAACCAAT+AGG	-	chr4_3:21884291-21884310	None:intergenic	30.0%
TTCATCAATAAATCATCTGC+TGG	-	chr4_3:21884671-21884690	None:intergenic	30.0%
TGCAGTATTTCCATATAGAT+GGG	+	chr4_3:21884772-21884791	Msa0634560:CDS	30.0%
TGTAAAGAAATACGCTACAA+AGG	-	chr4_3:21885572-21885591	None:intergenic	30.0%
AGGTCCATGTAAAAGAATAT+CGG	-	chr4_3:21885620-21885639	None:intergenic	30.0%
CAACAGGTTTAATCAAGTTA+AGG	-	chr4_3:21886142-21886161	None:intergenic	30.0%
CAAATTCTTCTCAATGTTGT+TGG	+	chr4_3:21886245-21886264	Msa0634560:CDS	30.0%

Showing 1 to 10 of 330 entries

Previous1 2 3 4 5…33Next

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	21883379	21888307	21883379	ID=Msa0634560;Name=Msa0634560
chr4_3	mRNA	21883379	21888307	21883379	ID=Msa0634560-mRNA-1;Parent=Msa0634560;Name=Msa0634560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=292\|1\|1\|1\|0.83\|0.71\|7\|245\|741
chr4_3	exon	21883379	21883626	21883379	ID=Msa0634560-mRNA-1:exon:5677;Parent=Msa0634560-mRNA-1
chr4_3	exon	21884588	21885540	21884588	ID=Msa0634560-mRNA-1:exon:5678;Parent=Msa0634560-mRNA-1
chr4_3	exon	21885653	21886021	21885653	ID=Msa0634560-mRNA-1:exon:5679;Parent=Msa0634560-mRNA-1
chr4_3	exon	21886137	21886403	21886137	ID=Msa0634560-mRNA-1:exon:5680;Parent=Msa0634560-mRNA-1
chr4_3	exon	21886506	21886633	21886506	ID=Msa0634560-mRNA-1:exon:5681;Parent=Msa0634560-mRNA-1
chr4_3	exon	21886745	21886942	21886745	ID=Msa0634560-mRNA-1:exon:5682;Parent=Msa0634560-mRNA-1
chr4_3	exon	21887708	21888307	21887708	ID=Msa0634560-mRNA-1:exon:5683;Parent=Msa0634560-mRNA-1
chr4_3	five_prime_UTR	21883379	21883626	21883379	ID=Msa0634560-mRNA-1:five_prime_utr;Parent=Msa0634560-mRNA-1
chr4_3	five_prime_UTR	21884588	21884631	21884588	ID=Msa0634560-mRNA-1:five_prime_utr;Parent=Msa0634560-mRNA-1
chr4_3	CDS	21884632	21885540	21884632	ID=Msa0634560-mRNA-1:cds;Parent=Msa0634560-mRNA-1
chr4_3	CDS	21885653	21886021	21885653	ID=Msa0634560-mRNA-1:cds;Parent=Msa0634560-mRNA-1
chr4_3	CDS	21886137	21886403	21886137	ID=Msa0634560-mRNA-1:cds;Parent=Msa0634560-mRNA-1
chr4_3	CDS	21886506	21886633	21886506	ID=Msa0634560-mRNA-1:cds;Parent=Msa0634560-mRNA-1
chr4_3	CDS	21886745	21886942	21886745	ID=Msa0634560-mRNA-1:cds;Parent=Msa0634560-mRNA-1
chr4_3	CDS	21887708	21888062	21887708	ID=Msa0634560-mRNA-1:cds;Parent=Msa0634560-mRNA-1
chr4_3	three_prime_UTR	21888063	21888307	21888063	ID=Msa0634560-mRNA-1:three_prime_utr;Parent=Msa0634560-mRNA-1

Gene Sequence

>Msa0634560

ATGATGGAATCCTGCAATTGTATTGAGCCACAATGGCCAGCAGATGATTTATTGATGAAATACCAATACATATCAGATTTCTTCATCGCCCTTGCTTATTTCTCGATCCCGCTCGAGCTTATCTACTTTGTTAAGAAATCTGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCCTTCATAGTTCTATGTGGAGCAACACATCTAATAAATTTATGGACCTTCACAATTCATACAAGAACCGTGGCAATTGTAATGACCACCGCCAAGGTTTTAACTGCTGTCGTATCGTGTGCCACTGCCCTTATGCTTGTACATATTATTCCCGATCTATTAAGTGTTAAAACTAGAGAATTATTTTTGAAGAACAAGGCTGCGGAGCTTGATAGAGAAATGGGCTTGATTCGTACGCAGGAAGAAACTGGTCGACATGTTAGGATGTTGACTCATGAGATTAGAAGTACTCTTGATAGACATACAATACTGAAAACGACCCTTGTTGAACTCGGTAGAACTCTTGGGTTAGAGGAATGTGCGTTATGGATGCCGACACGTACTGGGTTGGAGCTTCAACTTTCTTACACATTGAGACAGCAGAACCCTGCTGGATATACGGTACCTATTAATTTTCCTGTGATCAACCACGTATTTAGTAGCAACCGTGCAGTTAAAATTTCATCGAATTGCCCAGTTGCTAGATTACGACCTCATGCTGCAAAATACATGCCTGGGGCAGTAGTTGCTATTCGGGTTCCTCTCCTAAATCTTTCTAATTTTCAAATATATGATTGGCCTGAGGTTTCAACTAGAAGCTATGCTTTGATGGTTTTGATGCTTCCATCTGATAGTGCTAGACAGTGGCATGTACATGAGTTAGAGCTGGTCGAGGTAGTTGCTGATCAGGTAGCTGTTGCTCTTTCTCATGCTGCAATCTTAGAAGAGTCGATGAGGGCAAGGGATCAACTTATGGAGCAGAATGTTGCACTTGATATGGCAAGAAGAGAAGCAGAAACTGCAATTCATGCTCGCAATGACTTTTTGGCTGTTATGAATCACGAGATGAGAACTCCGATGCATGCAATTATTGCACTCTCTTCATTGATGCAGGAAACAGATTTGACTGCTGAGCAACGTCTAATGGTGGAAACAATACTAAAAAGCAGTAATTTATTAGCTACCCTCGTCAACGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTTTTCAACTTGAAATATCAACATTTAACCTTCATTCGTTGTTTAGAGAGGTCCTTAACTTGATTAAACCTGTTGCATCTGTTAAAAAGCTGTCACTCACTTTACATTTCGCATCAGATTTGCCGGTGCATGCGATTGGCGATGAAAAGCGTCTCATGCAAATTCTTCTCAATGTTGTTGGTAATGCTGTTAAGTTCACAAAAGAAGGCAGCATTTCCATCGCTGTGGTTGTTGTAAAGCCTGAATCCTTCCGGGATATTAGATTTCCTGATTTCCTACCAGTACCAAGTGATAGCCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATCAGGAATGAATCCACAAGACATCCCAAAGTTATTCACTAAGTTTGCACAAAACCAAACATTAGCAACAAAAAATCCCGTTGGAAGTGGGCTTGGGCTTGCAATTTGTAAAAGGTTTGTGAATCTCATGGAAGGACATATTTGGATTGAAAGCGAAGGTATTGGTAAAGGATGTACAGCCACTTTCATTGTAAAACTCGGAATCCCGGACCGTCCAATTGAACATAAACTACCTTACAAACCTAAAGCTCTAGTAAATCATGGATCTACAAACATTTCCGGCCTCAAGGTTCTTGTCATGGATGATAATGGGGTGAGCAGGTCAGCGACAAAGGGACTTCTTATCCATTTAGGATGCGATGTCACAACTGTTAGCTCAAGCGAAGAATGCCTGCGTGTTGTTTCTCTGGAACACAAAGTCGTCTTTATGGATGTTTGTACAGGATTAGATGGTTATGAATTAGCGGTCCGTATACAAGAGAAGTTCACAAAACGTCAAGATAGACCACTTATAGTTGCTCTTACCGGAAATACAAACAAGTTGACCAAAGAGAACTGTTTGAGAGCTGGTGTAAATGGCGTAGTTTTAAAACCTGTTTCTGTTGAGAAGATGAAAGGTGTTTTAACAGAACTCTTGGAGCGTCGGTTTGTGTTTGAAACAATTTAA

Protein sequence

>Msa0634560

MMESCNCIEPQWPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPTRTGLELQLSYTLRQQNPAGYTVPINFPVINHVFSSNRAVKISSNCPVARLRPHAAKYMPGAVVAIRVPLLNLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDMARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLMQETDLTAEQRLMVETILKSSNLLATLVNDVLDLSRLEDGSFQLEISTFNLHSLFREVLNLIKPVASVKKLSLTLHFASDLPVHAIGDEKRLMQILLNVVGNAVKFTKEGSISIAVVVVKPESFRDIRFPDFLPVPSDSHFYLRVQVKDSGSGMNPQDIPKLFTKFAQNQTLATKNPVGSGLGLAICKRFVNLMEGHIWIESEGIGKGCTATFIVKLGIPDRPIEHKLPYKPKALVNHGSTNISGLKVLVMDDNGVSRSATKGLLIHLGCDVTTVSSSEECLRVVSLEHKVVFMDVCTGLDGYELAVRIQEKFTKRQDRPLIVALTGNTNKLTKENCLRAGVNGVVLKPVSVEKMKGVLTELLERRFVFETI*