Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634720 | XP_003605474.1 | 72.851 | 221 | 43 | 2 | 1 | 209 | 1 | 216 | 1.58e-100 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634720 | sp|Q9FJK3|AGL80_ARATH | 55.844 | 154 | 67 | 1 | 1 | 154 | 1 | 153 | 1.56e-43 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634720 | G7JM29 | 72.851 | 221 | 43 | 2 | 1 | 209 | 1 | 216 | 7.57e-101 | 308 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0634720 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634720 | MtrunA17_Chr4g0014031 | 72.851 | 221 | 43 | 2 | 1 | 209 | 1 | 216 | 1.46e-104 | 308 |
| Msa0634720 | MtrunA17_Chr4g0014131 | 67.949 | 234 | 40 | 2 | 1 | 212 | 1 | 221 | 1.45e-100 | 297 |
| Msa0634720 | MtrunA17_Chr4g0014321 | 59.276 | 221 | 81 | 1 | 1 | 212 | 1 | 221 | 2.51e-89 | 269 |
| Msa0634720 | MtrunA17_Chr4g0014101 | 83.234 | 167 | 27 | 1 | 221 | 386 | 181 | 347 | 4.18e-89 | 272 |
| Msa0634720 | MtrunA17_Chr8g0351751 | 58.515 | 229 | 75 | 3 | 1 | 209 | 1 | 229 | 6.07e-84 | 256 |
| Msa0634720 | MtrunA17_Chr4g0013041 | 61.538 | 195 | 67 | 2 | 1 | 195 | 1 | 187 | 8.46e-84 | 254 |
| Msa0634720 | MtrunA17_Chr4g0014121 | 80.255 | 157 | 31 | 0 | 1 | 157 | 29 | 185 | 1.26e-80 | 245 |
| Msa0634720 | MtrunA17_Chr3g0107381 | 47.222 | 216 | 98 | 4 | 1 | 211 | 1 | 205 | 3.73e-61 | 196 |
| Msa0634720 | MtrunA17_Chr4g0014161 | 66.242 | 157 | 53 | 0 | 223 | 379 | 178 | 334 | 1.28e-60 | 199 |
| Msa0634720 | MtrunA17_Chr4g0014141 | 64.458 | 166 | 57 | 2 | 223 | 386 | 175 | 340 | 1.76e-60 | 198 |
| Msa0634720 | MtrunA17_Chr3g0110131 | 65.584 | 154 | 52 | 1 | 1 | 154 | 1 | 153 | 1.96e-60 | 195 |
| Msa0634720 | MtrunA17_Chr2g0296831 | 72.131 | 122 | 34 | 0 | 1 | 122 | 1 | 122 | 5.48e-50 | 164 |
| Msa0634720 | MtrunA17_Chr5g0432691 | 47.742 | 155 | 80 | 1 | 1 | 155 | 1 | 154 | 6.48e-45 | 152 |
| Msa0634720 | MtrunA17_Chr3g0107331 | 49.007 | 151 | 76 | 1 | 3 | 153 | 2 | 151 | 3.45e-44 | 150 |
| Msa0634720 | MtrunA17_Chr4g0014111 | 77.143 | 105 | 20 | 2 | 221 | 321 | 181 | 285 | 4.84e-44 | 155 |
| Msa0634720 | MtrunA17_Chr3g0107461 | 43.590 | 156 | 88 | 0 | 1 | 156 | 1 | 156 | 1.06e-41 | 144 |
| Msa0634720 | MtrunA17_Chr3g0107351 | 46.711 | 152 | 80 | 1 | 3 | 154 | 2 | 152 | 1.25e-41 | 144 |
| Msa0634720 | MtrunA17_Chr5g0420351 | 46.154 | 156 | 82 | 2 | 1 | 156 | 1 | 154 | 3.56e-39 | 137 |
| Msa0634720 | MtrunA17_Chr3g0107361 | 44.737 | 152 | 83 | 1 | 3 | 154 | 2 | 152 | 4.22e-39 | 137 |
| Msa0634720 | MtrunA17_Chr3g0107341 | 46.053 | 152 | 81 | 1 | 3 | 154 | 2 | 152 | 4.31e-39 | 137 |
| Msa0634720 | MtrunA17_Chr2g0283941 | 38.983 | 177 | 107 | 1 | 1 | 176 | 1 | 177 | 3.71e-38 | 137 |
| Msa0634720 | MtrunA17_Chr1g0188681 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 1.36e-35 | 127 |
| Msa0634720 | MtrunA17_Chr1g0197461 | 42.208 | 154 | 87 | 2 | 3 | 156 | 2 | 153 | 1.01e-33 | 123 |
| Msa0634720 | MtrunA17_Chr3g0105791 | 44.444 | 126 | 70 | 0 | 29 | 154 | 1 | 126 | 1.94e-33 | 121 |
| Msa0634720 | MtrunA17_Chr1g0188661 | 44.231 | 156 | 85 | 2 | 1 | 156 | 1 | 154 | 2.23e-33 | 122 |
| Msa0634720 | MtrunA17_Chr7g0218151 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 7.06e-33 | 120 |
| Msa0634720 | MtrunA17_Chr4g0012761 | 44.231 | 156 | 85 | 2 | 1 | 156 | 1 | 154 | 9.86e-33 | 120 |
| Msa0634720 | MtrunA17_Chr4g0031421 | 44.444 | 126 | 70 | 0 | 29 | 154 | 1 | 126 | 3.91e-32 | 118 |
| Msa0634720 | MtrunA17_Chr1g0197321 | 39.869 | 153 | 80 | 2 | 1 | 153 | 1 | 141 | 4.27e-32 | 118 |
| Msa0634720 | MtrunA17_Chr1g0193311 | 44.872 | 156 | 84 | 2 | 1 | 156 | 1 | 154 | 5.92e-32 | 118 |
| Msa0634720 | MtrunA17_Chr1g0197261 | 40.667 | 150 | 87 | 2 | 1 | 150 | 1 | 148 | 3.52e-31 | 116 |
| Msa0634720 | MtrunA17_Chr1g0188651 | 43.590 | 156 | 84 | 2 | 1 | 156 | 1 | 152 | 1.15e-30 | 115 |
| Msa0634720 | MtrunA17_Chr3g0106421 | 41.538 | 130 | 76 | 0 | 29 | 158 | 1 | 130 | 3.21e-28 | 110 |
| Msa0634720 | MtrunA17_Chr2g0296861 | 38.217 | 157 | 96 | 1 | 1 | 157 | 1 | 156 | 6.24e-25 | 99.8 |
| Msa0634720 | MtrunA17_Chr7g0267601 | 39.370 | 127 | 77 | 0 | 3 | 129 | 6 | 132 | 1.30e-22 | 99.4 |
| Msa0634720 | MtrunA17_Chr4g0008701 | 40.157 | 127 | 76 | 0 | 3 | 129 | 6 | 132 | 4.45e-22 | 97.8 |
| Msa0634720 | MtrunA17_Chr3g0128721 | 31.690 | 142 | 97 | 0 | 3 | 144 | 6 | 147 | 9.28e-20 | 90.9 |
| Msa0634720 | MtrunA17_Chr2g0296851 | 58.025 | 81 | 34 | 0 | 74 | 154 | 1 | 81 | 1.02e-18 | 80.5 |
| Msa0634720 | MtrunA17_Chr3g0106501 | 33.594 | 128 | 85 | 0 | 29 | 156 | 1 | 128 | 1.12e-18 | 82.4 |
| Msa0634720 | MtrunA17_Chr1g0212151 | 31.858 | 113 | 70 | 3 | 1 | 107 | 1 | 112 | 4.80e-12 | 66.6 |
| Msa0634720 | MtrunA17_Chr6g0457851 | 32.743 | 113 | 69 | 4 | 1 | 107 | 11 | 122 | 9.70e-12 | 65.9 |
| Msa0634720 | MtrunA17_Chr6g0449861 | 33.628 | 113 | 68 | 4 | 1 | 107 | 9 | 120 | 6.32e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634720 | AT5G48670.1 | 55.844 | 154 | 67 | 1 | 1 | 154 | 1 | 153 | 1.58e-44 | 157 |
| Msa0634720 | AT1G33970.1 | 50.000 | 156 | 78 | 0 | 221 | 376 | 175 | 330 | 1.61e-43 | 154 |
| Msa0634720 | AT1G33970.2 | 50.000 | 156 | 78 | 0 | 221 | 376 | 175 | 330 | 1.61e-43 | 154 |
| Msa0634720 | AT1G33970.4 | 50.000 | 156 | 78 | 0 | 221 | 376 | 175 | 330 | 1.61e-43 | 154 |
| Msa0634720 | AT1G33970.5 | 50.000 | 156 | 78 | 0 | 221 | 376 | 175 | 330 | 1.61e-43 | 154 |
| Msa0634720 | AT5G26630.1 | 45.026 | 191 | 94 | 2 | 1 | 181 | 1 | 190 | 6.18e-39 | 139 |
| Msa0634720 | AT1G65330.1 | 44.643 | 168 | 83 | 2 | 3 | 161 | 2 | 168 | 1.12e-38 | 140 |
| Msa0634720 | AT1G65300.1 | 46.053 | 152 | 81 | 1 | 3 | 154 | 2 | 152 | 8.91e-38 | 137 |
| Msa0634720 | AT5G26650.1 | 35.909 | 220 | 116 | 6 | 5 | 209 | 3 | 212 | 3.12e-33 | 127 |
| Msa0634720 | AT5G27960.1 | 35.455 | 220 | 117 | 6 | 5 | 209 | 3 | 212 | 5.85e-33 | 126 |
| Msa0634720 | AT1G31630.1 | 36.905 | 168 | 95 | 3 | 3 | 161 | 2 | 167 | 2.62e-31 | 122 |
| Msa0634720 | AT1G31640.1 | 39.735 | 151 | 89 | 2 | 3 | 153 | 2 | 150 | 1.71e-29 | 119 |
| Msa0634720 | AT5G27810.1 | 55.914 | 93 | 41 | 0 | 29 | 121 | 1 | 93 | 2.82e-29 | 110 |
| Msa0634720 | AT3G05860.2 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 7.27e-29 | 112 |
| Msa0634720 | AT3G05860.3 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 2.30e-28 | 112 |
| Msa0634720 | AT3G05860.1 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 3.25e-28 | 111 |
| Msa0634720 | AT2G28700.1 | 37.423 | 163 | 97 | 2 | 1 | 161 | 1 | 160 | 2.12e-27 | 111 |
| Msa0634720 | AT1G22590.2 | 32.099 | 162 | 106 | 1 | 1 | 162 | 1 | 158 | 9.94e-25 | 99.8 |
| Msa0634720 | AT1G33970.3 | 46.535 | 101 | 54 | 0 | 221 | 321 | 175 | 275 | 1.65e-23 | 99.4 |
| Msa0634720 | AT5G26580.1 | 34.416 | 154 | 86 | 2 | 1 | 154 | 1 | 139 | 7.69e-22 | 95.9 |
| Msa0634720 | AT5G06500.1 | 35.669 | 157 | 99 | 2 | 1 | 157 | 1 | 155 | 2.26e-21 | 92.4 |
| Msa0634720 | AT4G09950.2 | 33.918 | 171 | 108 | 3 | 221 | 386 | 103 | 273 | 3.36e-17 | 81.3 |
| Msa0634720 | AT4G09950.1 | 33.918 | 171 | 108 | 3 | 221 | 386 | 166 | 336 | 5.87e-17 | 81.6 |
| Msa0634720 | AT2G40210.1 | 37.984 | 129 | 79 | 1 | 1 | 129 | 1 | 128 | 4.36e-16 | 79.3 |
| Msa0634720 | AT1G33900.1 | 34.483 | 145 | 85 | 3 | 223 | 367 | 173 | 307 | 5.90e-16 | 78.6 |
| Msa0634720 | AT1G33870.1 | 34.711 | 121 | 77 | 1 | 222 | 342 | 129 | 247 | 1.65e-15 | 76.3 |
| Msa0634720 | AT5G58890.1 | 37.121 | 132 | 72 | 5 | 1 | 123 | 1 | 130 | 5.62e-14 | 72.4 |
| Msa0634720 | AT4G09940.1 | 33.333 | 147 | 94 | 4 | 221 | 364 | 197 | 342 | 2.05e-13 | 71.6 |
| Msa0634720 | AT4G09940.2 | 33.333 | 147 | 94 | 4 | 221 | 364 | 240 | 385 | 2.44e-13 | 71.6 |
| Msa0634720 | AT1G33960.1 | 36.585 | 123 | 77 | 1 | 221 | 343 | 194 | 315 | 2.19e-12 | 68.2 |
| Msa0634720 | AT1G33960.2 | 36.585 | 123 | 77 | 1 | 221 | 343 | 218 | 339 | 2.78e-12 | 68.2 |
| Msa0634720 | AT1G33950.2 | 35.593 | 118 | 75 | 1 | 219 | 336 | 160 | 276 | 5.17e-12 | 66.6 |
| Msa0634720 | AT1G33950.1 | 35.593 | 118 | 75 | 1 | 219 | 336 | 166 | 282 | 5.95e-12 | 66.6 |
| Msa0634720 | AT4G09930.1 | 31.737 | 167 | 106 | 3 | 221 | 386 | 176 | 335 | 1.09e-11 | 65.9 |
| Msa0634720 | AT5G55690.1 | 43.038 | 79 | 36 | 3 | 1 | 71 | 1 | 78 | 1.67e-11 | 64.7 |
| Msa0634720 | AT5G55690.2 | 43.038 | 79 | 36 | 3 | 1 | 71 | 1 | 78 | 1.67e-11 | 64.7 |
| Msa0634720 | AT1G33930.1 | 33.913 | 115 | 75 | 1 | 222 | 336 | 188 | 301 | 2.96e-11 | 64.7 |
Find 90 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | 4_3:+22378972 | Msa0634720:CDS |
| TACCAATGTCCTTCAAATTA+TGG | 0.254451 | 4_3:-22379099 | None:intergenic |
| GATTTGTTTAAACTTTCTTC+TGG | 0.272702 | 4_3:+22383083 | Msa0634720:three_prime_UTR |
| ATAATTTCATCATCATTAAT+AGG | 0.285530 | 4_3:-22379211 | None:intergenic |
| AACAAAGGGTCTATTGAAAA+AGG | 0.314581 | 4_3:+22378739 | Msa0634720:CDS |
| GATACAATCGTAATTCTTTA+CGG | 0.322930 | 4_3:+22379414 | Msa0634720:intron |
| ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | 4_3:+22378819 | Msa0634720:CDS |
| GCAAATAACTCATCTGTATA+GGG | 0.347233 | 4_3:-22381564 | None:intergenic |
| TGCAAATAACTCATCTGTAT+AGG | 0.363531 | 4_3:-22381565 | None:intergenic |
| GCAAAGAAAGATTGATTCCT+TGG | 0.383767 | 4_3:+22381709 | Msa0634720:CDS |
| TATGCAAAGTCAATTATTGA+TGG | 0.385590 | 4_3:+22379231 | Msa0634720:CDS |
| AACATCTAGGAGTGAGGAAA+TGG | 0.393870 | 4_3:+22379159 | Msa0634720:CDS |
| TCCTCACTCCTAGATGTTGT+TGG | 0.401049 | 4_3:-22379154 | None:intergenic |
| AGTTGAAGGAGTCAACTAAA+AGG | 0.402723 | 4_3:+22382864 | Msa0634720:CDS |
| AATTCTTTACGGTGTAATCT+TGG | 0.404119 | 4_3:+22379425 | Msa0634720:CDS |
| GTAGATTGAGTCAAAGTTGA+AGG | 0.405093 | 4_3:+22382850 | Msa0634720:intron |
| GAAGGACATTGGTAGACGTT+TGG | 0.410243 | 4_3:+22379108 | Msa0634720:CDS |
| GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | 4_3:+22378973 | Msa0634720:CDS |
| CTCCGCAAGCGAGGTGGTAA+TGG | 0.433495 | 4_3:+22383016 | Msa0634720:CDS |
| CTAGATGTTGTTGGAGGTGG+TGG | 0.444811 | 4_3:-22379145 | None:intergenic |
| GTTGATTGACCATAATTTGA+AGG | 0.445081 | 4_3:+22379090 | Msa0634720:CDS |
| CACAACCATGGCTAGAAGTA+AGG | 0.457305 | 4_3:+22378661 | None:intergenic |
| AAGGATGAAAAGAAGCAATC+TGG | 0.460191 | 4_3:+22381483 | Msa0634720:CDS |
| CTCCTAGATGTTGTTGGAGG+TGG | 0.461559 | 4_3:-22379148 | None:intergenic |
| TTCTTCTGACTGTCCTTCCA+AGG | 0.465492 | 4_3:-22381726 | None:intergenic |
| GCATATGAAGCAAACATATG+AGG | 0.466903 | 4_3:+22381769 | Msa0634720:CDS |
| TCTGGTGAAGGCCAAATCTC+AGG | 0.467267 | 4_3:-22378830 | None:intergenic |
| CTCATAAGAGCCATACACTA+TGG | 0.467809 | 4_3:-22378801 | None:intergenic |
| AGCAGAAGACAATGCAAAGT+TGG | 0.468961 | 4_3:+22382928 | Msa0634720:CDS |
| TGAGTTATTTGCAGAACTAA+AGG | 0.470141 | 4_3:+22381575 | Msa0634720:CDS |
| TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4_3:+22379240 | Msa0634720:CDS |
| TTGATTTGAGTTATCTTACT+TGG | 0.482489 | 4_3:+22379068 | Msa0634720:CDS |
| CTTGACACAAAGGATTCTGA+AGG | 0.491635 | 4_3:+22378934 | Msa0634720:CDS |
| AGCTTGATAGTTTCACAGAA+TGG | 0.501677 | 4_3:+22381534 | Msa0634720:CDS |
| TGCAGCATCATTGACAATGA+AGG | 0.502295 | 4_3:-22378693 | None:intergenic |
| GAGCAATGGAACTGCGTAGC+GGG | 0.502489 | 4_3:+22381687 | Msa0634720:CDS |
| AGAAAGATTGATTCCTTGGA+AGG | 0.503880 | 4_3:+22381713 | Msa0634720:CDS |
| GATGTTGTTGGAGGTGGTGG+TGG | 0.505459 | 4_3:-22379142 | None:intergenic |
| ATCCACATTGTACATAGTAA+AGG | 0.508516 | 4_3:-22383200 | None:intergenic |
| TCACTCCTAGATGTTGTTGG+AGG | 0.510768 | 4_3:-22379151 | None:intergenic |
| TTGTGGGTCATGGCCATGTT+GGG | 0.512249 | 4_3:+22379185 | Msa0634720:CDS |
| TTTGTGTCAAGAAAGTCTCT+TGG | 0.512375 | 4_3:-22378922 | None:intergenic |
| GAGTGAGGAAATGGAAATTG+TGG | 0.516317 | 4_3:+22379168 | Msa0634720:CDS |
| GACCATAATTTGAAGGACAT+TGG | 0.517963 | 4_3:+22379097 | Msa0634720:CDS |
| AGTCACGGCATTTATACAAA+AGG | 0.521602 | 4_3:-22383134 | None:intergenic |
| GGACATTGGTAGACGTTTGG+CGG | 0.524285 | 4_3:+22379111 | Msa0634720:CDS |
| AGTGAGGAAATGGAAATTGT+GGG | 0.526750 | 4_3:+22379169 | Msa0634720:CDS |
| GAAGGAGTCAACTAAAAGGC+TGG | 0.535970 | 4_3:+22382868 | Msa0634720:CDS |
| ATTGTGGGTCATGGCCATGT+TGG | 0.537983 | 4_3:+22379184 | Msa0634720:CDS |
| CACCACCTCCAACAACATCT+AGG | 0.540352 | 4_3:+22379146 | Msa0634720:CDS |
| ATGTCTCATTGTCTCAATGA+AGG | 0.542205 | 4_3:+22379016 | Msa0634720:CDS |
| TGATAGTTTCACAGAATGGT+GGG | 0.554994 | 4_3:+22381538 | Msa0634720:CDS |
| AACCATTACCACCTCGCTTG+CGG | 0.557199 | 4_3:-22383018 | None:intergenic |
| GAAGCCTGTGCCATAGTGTA+TGG | 0.560968 | 4_3:+22378791 | Msa0634720:CDS |
| AGCAAACCCTCTCTTTGTGT+GGG | 0.561083 | 4_3:+22381430 | Msa0634720:intron |
| GAGATTTGGCCTTCACCAGA+GGG | 0.565461 | 4_3:+22378833 | Msa0634720:CDS |
| TAGCAAACCCTCTCTTTGTG+TGG | 0.566103 | 4_3:+22381429 | Msa0634720:intron |
| AACGATTCCCACACAAAGAG+AGG | 0.567121 | 4_3:-22381437 | None:intergenic |
| AAATAAGTGTGCAGTAGTCA+CGG | 0.567614 | 4_3:-22383149 | None:intergenic |
| TTTAACCTTACTTCTAGCCA+TGG | 0.572129 | 4_3:-22378666 | None:intergenic |
| GATTTGGCCTTCACCAGAGG+GGG | 0.573799 | 4_3:+22378835 | Msa0634720:CDS |
| GCTAAAACATATTACTGAGA+TGG | 0.577150 | 4_3:+22381796 | Msa0634720:CDS |
| TTGATAGTTTCACAGAATGG+TGG | 0.581144 | 4_3:+22381537 | Msa0634720:CDS |
| GTGCACGAGACAGTGCCCTT+TGG | 0.582311 | 4_3:+22379274 | Msa0634720:CDS |
| ACAATGAAATACGAAAACTA+AGG | 0.582337 | 4_3:+22382966 | Msa0634720:CDS |
| TTGATTGCAGAAAGGAGCAA+TGG | 0.584225 | 4_3:+22381673 | Msa0634720:intron |
| CATGAAGAACTCCGCAAGCG+AGG | 0.587165 | 4_3:+22383007 | Msa0634720:CDS |
| AAGAGACTTTCTTGACACAA+AGG | 0.587821 | 4_3:+22378924 | Msa0634720:CDS |
| CATTAATAGGTATCCCAACA+TGG | 0.589301 | 4_3:-22379198 | None:intergenic |
| AGCGCTACTAGATCATAGAA+TGG | 0.596677 | 4_3:-22383044 | None:intergenic |
| GAAGGCCAAATCTCAGGTTG+AGG | 0.598100 | 4_3:-22378824 | None:intergenic |
| ACAGGCTTCAATGCCACAGA+GGG | 0.601811 | 4_3:-22378777 | None:intergenic |
| TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4_3:+22379247 | Msa0634720:CDS |
| TGAGATTTGGCCTTCACCAG+AGG | 0.614269 | 4_3:+22378832 | Msa0634720:CDS |
| AAAACTAAGGAAGAATCTTG+AGG | 0.621998 | 4_3:+22382979 | Msa0634720:CDS |
| ACGATTCCCACACAAAGAGA+GGG | 0.637084 | 4_3:-22381436 | None:intergenic |
| AGATTTGGCCTTCACCAGAG+GGG | 0.650878 | 4_3:+22378834 | Msa0634720:CDS |
| TCCAACAACATCTAGGAGTG+AGG | 0.651992 | 4_3:+22379153 | Msa0634720:CDS |
| TCATTGTCAATGATGCTGCA+AGG | 0.652548 | 4_3:+22378696 | Msa0634720:CDS |
| GAAATGGAAATTGTGGGTCA+TGG | 0.655161 | 4_3:+22379175 | Msa0634720:CDS |
| GACCTTTACTATGTACAATG+TGG | 0.656121 | 4_3:+22383198 | Msa0634720:three_prime_UTR |
| AGAGCCATACACTATGGCAC+AGG | 0.656790 | 4_3:-22378795 | None:intergenic |
| GAAGAACTCCGCAAGCGAGG+TGG | 0.663684 | 4_3:+22383010 | Msa0634720:CDS |
| ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4_3:+22379243 | Msa0634720:CDS |
| TCTCTTAGACAACACGACAA+AGG | 0.675618 | 4_3:+22381464 | Msa0634720:CDS |
| GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4_3:+22378764 | Msa0634720:CDS |
| TGTGCACGACAATATGTCAA+CGG | 0.688304 | 4_3:+22379045 | Msa0634720:CDS |
| ACTAAGGAAGAATCTTGAGG+AGG | 0.695240 | 4_3:+22382982 | Msa0634720:CDS |
| CACAGGCTTCAATGCCACAG+AGG | 0.696692 | 4_3:-22378778 | None:intergenic |
| GGAGCAATGGAACTGCGTAG+CGG | 0.715254 | 4_3:+22381686 | Msa0634720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTAATCTTTTTTTTAG+AGG | - | chr4_3:22381376-22381395 | None:intergenic | 10.0% |
| !!! | GTTTAGATTTTATAAAAAAT+TGG | + | chr4_3:22382470-22382489 | Msa0634720:intron | 10.0% |
| !! | ATAATTTCATCATCATTAAT+AGG | - | chr4_3:22379214-22379233 | None:intergenic | 15.0% |
| !! | TCACCATAAAATAAAAAATT+GGG | - | chr4_3:22379361-22379380 | None:intergenic | 15.0% |
| !! | ATCACCATAAAATAAAAAAT+TGG | - | chr4_3:22379362-22379381 | None:intergenic | 15.0% |
| !! | TGAATAAAAAATCTTATTGT+TGG | + | chr4_3:22379491-22379510 | Msa0634720:intron | 15.0% |
| !! | GAATAAAAAATCTTATTGTT+GGG | + | chr4_3:22379492-22379511 | Msa0634720:intron | 15.0% |
| !!! | GTTACTTTTACTATAAATAT+AGG | - | chr4_3:22380643-22380662 | None:intergenic | 15.0% |
| !!! | TTTTTCGAAAACATATTTTT+GGG | - | chr4_3:22380691-22380710 | None:intergenic | 15.0% |
| !!! | ATTTTTCGAAAACATATTTT+TGG | - | chr4_3:22380692-22380711 | None:intergenic | 15.0% |
| !! | TAAAAAAATATAGACACAAA+AGG | - | chr4_3:22381824-22381843 | None:intergenic | 15.0% |
| !!! | TAGATTTTATAAAAAATTGG+AGG | + | chr4_3:22382473-22382492 | Msa0634720:intron | 15.0% |
| !! | AACATACAAAAAAAGAACAA+AGG | + | chr4_3:22378724-22378743 | Msa0634720:CDS | 20.0% |
| !! | ACATACAAAAAAAGAACAAA+GGG | + | chr4_3:22378725-22378744 | Msa0634720:CDS | 20.0% |
| !! | AGAAACAAAGAAAAGAAAAT+AGG | + | chr4_3:22378972-22378991 | Msa0634720:CDS | 20.0% |
| !! | GAAACAAAGAAAAGAAAATA+GGG | + | chr4_3:22378973-22378992 | Msa0634720:CDS | 20.0% |
| !!! | AGTCCCAATTTTTTATTTTA+TGG | + | chr4_3:22379355-22379374 | Msa0634720:intron | 20.0% |
| !!! | GATATTAGTTAACTTTGTTT+CGG | - | chr4_3:22379576-22379595 | None:intergenic | 20.0% |
| !! | AAGGATAAGAATCAAAAATA+CGG | + | chr4_3:22379622-22379641 | Msa0634720:intron | 20.0% |
| !!! | CAAATTTGGTACAATTTTAT+GGG | - | chr4_3:22380667-22380686 | None:intergenic | 20.0% |
| !! | TAATTTCGTTGATCTTTAAT+CGG | + | chr4_3:22381392-22381411 | Msa0634720:intron | 20.0% |
| !!! | TAACTTAAGAAAGTTTGTTT+AGG | + | chr4_3:22381972-22381991 | Msa0634720:intron | 20.0% |
| !!! | TTGTTTGTTAAAAATTCACA+AGG | - | chr4_3:22382141-22382160 | None:intergenic | 20.0% |
| !! | TCTAAACCAAAATCATAATT+AGG | - | chr4_3:22382457-22382476 | None:intergenic | 20.0% |
| !! | TATGCTAATATATGTGAAAA+AGG | - | chr4_3:22382624-22382643 | None:intergenic | 20.0% |
| !! | TATGTGTTAGATCAATTATA+TGG | + | chr4_3:22382823-22382842 | Msa0634720:intron | 20.0% |
| !! | TTGATTTGAGTTATCTTACT+TGG | + | chr4_3:22379068-22379087 | Msa0634720:CDS | 25.0% |
| ! | TATGCAAAGTCAATTATTGA+TGG | + | chr4_3:22379231-22379250 | Msa0634720:CDS | 25.0% |
| ! | GATACAATCGTAATTCTTTA+CGG | + | chr4_3:22379414-22379433 | Msa0634720:intron | 25.0% |
| !! | TTTTTATTCAAGTAAACACC+CGG | - | chr4_3:22379481-22379500 | None:intergenic | 25.0% |
| ! | AACACACAAAAGATGTAATA+TGG | + | chr4_3:22379979-22379998 | Msa0634720:intron | 25.0% |
| ! | CAAAAGATGTAATATGGTTA+CGG | + | chr4_3:22379985-22380004 | Msa0634720:intron | 25.0% |
| ! | TAACATTACTCATCATATAG+TGG | - | chr4_3:22380385-22380404 | None:intergenic | 25.0% |
| ! | TGTTACAAAAGAGATATCAA+TGG | + | chr4_3:22380400-22380419 | Msa0634720:intron | 25.0% |
| ! | GTTACAAAAGAGATATCAAT+GGG | + | chr4_3:22380401-22380420 | Msa0634720:intron | 25.0% |
| !! | CCAAATTTGGTACAATTTTA+TGG | - | chr4_3:22380668-22380687 | None:intergenic | 25.0% |
| ! | CCATAAAATTGTACCAAATT+TGG | + | chr4_3:22380665-22380684 | Msa0634720:intron | 25.0% |
| ! | AGAAACAGAGAAAAGATAAT+TGG | + | chr4_3:22380963-22380982 | Msa0634720:intron | 25.0% |
| ! | GAAACAGAGAAAAGATAATT+GGG | + | chr4_3:22380964-22380983 | Msa0634720:intron | 25.0% |
| ! | ACAAATACATGAAGTAAATC+AGG | - | chr4_3:22381140-22381159 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTACACCTTTTT+AGG | + | chr4_3:22381155-22381174 | Msa0634720:intron | 25.0% |
| !! | CAATCTTGTTTCTTAAATCT+CGG | + | chr4_3:22381619-22381638 | Msa0634720:intron | 25.0% |
| !! | TTCATATATTGATTGCAGAA+AGG | + | chr4_3:22381665-22381684 | Msa0634720:intron | 25.0% |
| ! | TATATACATGAATTACTGCA+TGG | + | chr4_3:22381942-22381961 | Msa0634720:intron | 25.0% |
| ! | CAATATCAGAAATCAAGTAA+TGG | + | chr4_3:22382115-22382134 | Msa0634720:intron | 25.0% |
| !! | AGGATTAGTAGATTAGTTAT+TGG | + | chr4_3:22382210-22382229 | Msa0634720:intron | 25.0% |
| ! | ATAAATTGTCAAACCTAGTT+TGG | + | chr4_3:22382359-22382378 | Msa0634720:intron | 25.0% |
| ! | AACCAAAATCATAATTAGGA+TGG | - | chr4_3:22382453-22382472 | None:intergenic | 25.0% |
| ! | GTCATGTGAATATTATTTAG+AGG | - | chr4_3:22382753-22382772 | None:intergenic | 25.0% |
| ! | ATCTAACACATAAATACTAG+GGG | - | chr4_3:22382815-22382834 | None:intergenic | 25.0% |
| ! | GATCTAACACATAAATACTA+GGG | - | chr4_3:22382816-22382835 | None:intergenic | 25.0% |
| ! | TGATCTAACACATAAATACT+AGG | - | chr4_3:22382817-22382836 | None:intergenic | 25.0% |
| ! | ACAATGAAATACGAAAACTA+AGG | + | chr4_3:22382966-22382985 | Msa0634720:CDS | 25.0% |
| !! | GATTTGTTTAAACTTTCTTC+TGG | + | chr4_3:22383083-22383102 | Msa0634720:three_prime_UTR | 25.0% |
| AACAAAGGGTCTATTGAAAA+AGG | + | chr4_3:22378739-22378758 | Msa0634720:CDS | 30.0% | |
| GTTGATTGACCATAATTTGA+AGG | + | chr4_3:22379090-22379109 | Msa0634720:CDS | 30.0% | |
| TACCAATGTCCTTCAAATTA+TGG | - | chr4_3:22379102-22379121 | None:intergenic | 30.0% | |
| !! | TCAATTATTGATGGACTCAA+TGG | + | chr4_3:22379240-22379259 | Msa0634720:CDS | 30.0% |
| AATTGAGAAAAGATCCTTCA+AGG | - | chr4_3:22379334-22379353 | None:intergenic | 30.0% | |
| AATTCTTTACGGTGTAATCT+TGG | + | chr4_3:22379425-22379444 | Msa0634720:CDS | 30.0% | |
| TTATTTCCTGTCTGTAGTTT+CGG | + | chr4_3:22379453-22379472 | Msa0634720:intron | 30.0% | |
| AACCAATGTTCAATACAAGA+AGG | + | chr4_3:22379603-22379622 | Msa0634720:intron | 30.0% | |
| ATCCTTCTTGTATTGAACAT+TGG | - | chr4_3:22379608-22379627 | None:intergenic | 30.0% | |
| !! | TGTTCCATACACTTTGATTT+TGG | - | chr4_3:22380239-22380258 | None:intergenic | 30.0% |
| !! | AAGAATTTGTTGACCAAGTT+CGG | + | chr4_3:22380319-22380338 | Msa0634720:intron | 30.0% |
| ! | TTACTCATCATATAGTGGAA+CGG | - | chr4_3:22380380-22380399 | None:intergenic | 30.0% |
| TTGTATAGAGTTTGTCTCTT+TGG | - | chr4_3:22380546-22380565 | None:intergenic | 30.0% | |
| !!! | ACATATTTTTGGGCCAAATT+TGG | - | chr4_3:22380681-22380700 | None:intergenic | 30.0% |
| TTGTGAAAGTGACTCAAAAT+TGG | - | chr4_3:22380850-22380869 | None:intergenic | 30.0% | |
| ATGACTCAATGTCTTAAAGA+GGG | + | chr4_3:22381007-22381026 | Msa0634720:intron | 30.0% | |
| ATGATTTGAGTCATCTTTCT+TGG | + | chr4_3:22381059-22381078 | Msa0634720:intron | 30.0% | |
| !! | ACATTGATTTCACCCAATAA+AGG | - | chr4_3:22381286-22381305 | None:intergenic | 30.0% |
| TTATTGGGTGAAATCAATGT+AGG | - | chr4_3:22381220-22381239 | None:intergenic | 30.0% | |
| ! | CTAACACTCACTCTTTTATT+GGG | - | chr4_3:22381301-22381320 | None:intergenic | 30.0% |
| ! | TCTAACACTCACTCTTTTAT+TGG | - | chr4_3:22381302-22381321 | None:intergenic | 30.0% |
| ! | TGTTAGAGAGAGTTTTCAAA+AGG | + | chr4_3:22381315-22381334 | Msa0634720:intron | 30.0% |
| GCAAATAACTCATCTGTATA+GGG | - | chr4_3:22381567-22381586 | None:intergenic | 30.0% | |
| TGCAAATAACTCATCTGTAT+AGG | - | chr4_3:22381568-22381587 | None:intergenic | 30.0% | |
| TGAGTTATTTGCAGAACTAA+AGG | + | chr4_3:22381575-22381594 | Msa0634720:CDS | 30.0% | |
| GCTAAAACATATTACTGAGA+TGG | + | chr4_3:22381796-22381815 | Msa0634720:CDS | 30.0% | |
| CTGAAATGAATGCAACTATT+TGG | - | chr4_3:22382034-22382053 | None:intergenic | 30.0% | |
| TTCATTTCAGTTAGCTATGT+TGG | + | chr4_3:22382044-22382063 | Msa0634720:intron | 30.0% | |
| AACTAATCTACTAATCCTTG+TGG | - | chr4_3:22382208-22382227 | None:intergenic | 30.0% | |
| !! | AGATCTACTTGCATTTTGAT+CGG | - | chr4_3:22382320-22382339 | None:intergenic | 30.0% |
| CAAGTAGATCTTGATCAAAT+GGG | + | chr4_3:22382329-22382348 | Msa0634720:intron | 30.0% | |
| CATCTTGATCATAAATCTCA+AGG | + | chr4_3:22382387-22382406 | Msa0634720:intron | 30.0% | |
| AATCATAATTAGGATGGAGT+TGG | - | chr4_3:22382447-22382466 | None:intergenic | 30.0% | |
| ! | CTCCATCCTAATTATGATTT+TGG | + | chr4_3:22382448-22382467 | Msa0634720:intron | 30.0% |
| CAAGTCCAAAATCAATAAGA+GGG | - | chr4_3:22382519-22382538 | None:intergenic | 30.0% | |
| TCAAGTCCAAAATCAATAAG+AGG | - | chr4_3:22382520-22382539 | None:intergenic | 30.0% | |
| !!! | TTATTGATTTTGGACTTGAG+AGG | + | chr4_3:22382521-22382540 | Msa0634720:intron | 30.0% |
| AAAAAGAACTTGTGGAGATA+TGG | + | chr4_3:22382545-22382564 | Msa0634720:intron | 30.0% | |
| TGAAAAAGGAAACTGTTTGT+TGG | - | chr4_3:22382610-22382629 | None:intergenic | 30.0% | |
| AAAACTAAGGAAGAATCTTG+AGG | + | chr4_3:22382979-22382998 | Msa0634720:CDS | 30.0% | |
| ATCCACATTGTACATAGTAA+AGG | - | chr4_3:22383203-22383222 | None:intergenic | 30.0% | |
| !! | TGAATTTTGAGAGCACAGAT+TGG | - | chr4_3:22378862-22378881 | None:intergenic | 35.0% |
| TTTGTGTCAAGAAAGTCTCT+TGG | - | chr4_3:22378925-22378944 | None:intergenic | 35.0% | |
| AAGAGACTTTCTTGACACAA+AGG | + | chr4_3:22378924-22378943 | Msa0634720:CDS | 35.0% | |
| ATGTCTCATTGTCTCAATGA+AGG | + | chr4_3:22379016-22379035 | Msa0634720:CDS | 35.0% | |
| GACCATAATTTGAAGGACAT+TGG | + | chr4_3:22379097-22379116 | Msa0634720:CDS | 35.0% | |
| AGTGAGGAAATGGAAATTGT+GGG | + | chr4_3:22379169-22379188 | Msa0634720:CDS | 35.0% | |
| CATTAATAGGTATCCCAACA+TGG | - | chr4_3:22379201-22379220 | None:intergenic | 35.0% | |
| !! | ATTATTGATGGACTCAATGG+TGG | + | chr4_3:22379243-22379262 | Msa0634720:CDS | 35.0% |
| CCATAATTGATCTCACCAAA+GGG | - | chr4_3:22379292-22379311 | None:intergenic | 35.0% | |
| TCCATAATTGATCTCACCAA+AGG | - | chr4_3:22379293-22379312 | None:intergenic | 35.0% | |
| GTGAGATCAATTATGGAGTT+TGG | + | chr4_3:22379296-22379315 | Msa0634720:intron | 35.0% | |
| ATCCTTCAAGGTAGTAAATC+AGG | - | chr4_3:22379322-22379341 | None:intergenic | 35.0% | |
| ! | GGTAGCTTTCAATACTTTTG+TGG | + | chr4_3:22379513-22379532 | Msa0634720:intron | 35.0% |
| ATCTTTACATTCCAACTTCG+AGG | - | chr4_3:22379721-22379740 | None:intergenic | 35.0% | |
| CATAGAATTCTGAATCACCA+TGG | + | chr4_3:22379769-22379788 | Msa0634720:intron | 35.0% | |
| !!! | AAATTTGACAGTTTTGGAGG+GGG | - | chr4_3:22379904-22379923 | None:intergenic | 35.0% |
| !!! | CAAATTTGACAGTTTTGGAG+GGG | - | chr4_3:22379905-22379924 | None:intergenic | 35.0% |
| !!! | GCAAATTTGACAGTTTTGGA+GGG | - | chr4_3:22379906-22379925 | None:intergenic | 35.0% |
| ! | AAGGGCAAATTTGACAGTTT+TGG | - | chr4_3:22379910-22379929 | None:intergenic | 35.0% |
| ATGGTTACGGTCATAAAATG+CGG | + | chr4_3:22379998-22380017 | Msa0634720:intron | 35.0% | |
| ! | ATGAATTTGAGAGCATGGAT+TGG | - | chr4_3:22380144-22380163 | None:intergenic | 35.0% |
| ACCAATAACAACTTGATGTG+TGG | + | chr4_3:22380193-22380212 | Msa0634720:intron | 35.0% | |
| ! | TCCACACATCAAGTTGTTAT+TGG | - | chr4_3:22380197-22380216 | None:intergenic | 35.0% |
| GCAACCAAAATCAAAGTGTA+TGG | + | chr4_3:22380232-22380251 | Msa0634720:intron | 35.0% | |
| !!! | TCGCTGTTGTTTTCTACTTT+TGG | - | chr4_3:22380276-22380295 | None:intergenic | 35.0% |
| ACTATTAGGATTGAGTCTCT+TGG | - | chr4_3:22380482-22380501 | None:intergenic | 35.0% | |
| AATCCTAATAGTGTTTCCCA+AGG | + | chr4_3:22380490-22380509 | Msa0634720:intron | 35.0% | |
| !! | GAACAAACACTAGGTTTTGA+GGG | - | chr4_3:22380524-22380543 | None:intergenic | 35.0% |
| GAAAGGCAACAACAAAACTA+GGG | - | chr4_3:22380570-22380589 | None:intergenic | 35.0% | |
| AGAAAGGCAACAACAAAACT+AGG | - | chr4_3:22380571-22380590 | None:intergenic | 35.0% | |
| AGTGTAAACCTTGAGATAGA+GGG | - | chr4_3:22380611-22380630 | None:intergenic | 35.0% | |
| AAAATAACAGCACGCAACAT+CGG | + | chr4_3:22380707-22380726 | Msa0634720:intron | 35.0% | |
| ! | AAATCATGTTTGCTGGAACT+GGG | - | chr4_3:22380814-22380833 | None:intergenic | 35.0% |
| ! | AAAATCATGTTTGCTGGAAC+TGG | - | chr4_3:22380815-22380834 | None:intergenic | 35.0% |
| ! | AGTTCCAGCAAACATGATTT+TGG | + | chr4_3:22380814-22380833 | Msa0634720:intron | 35.0% |
| AGTGACTCAAAATTGGAGTT+TGG | - | chr4_3:22380843-22380862 | None:intergenic | 35.0% | |
| TTTGTGTCATGAAAGTCTCT+TGG | - | chr4_3:22380916-22380935 | None:intergenic | 35.0% | |
| AAGAGACTTTCATGACACAA+AGG | + | chr4_3:22380915-22380934 | Msa0634720:intron | 35.0% | |
| AGAGACTTTCATGACACAAA+GGG | + | chr4_3:22380916-22380935 | Msa0634720:intron | 35.0% | |
| CATGACTCAATGTCTTAAAG+AGG | + | chr4_3:22381006-22381025 | Msa0634720:intron | 35.0% | |
| ! | GTTGATGGAGCAAAATTTGA+TGG | + | chr4_3:22381081-22381100 | Msa0634720:intron | 35.0% |
| ! | GAGCAAAATTTGATGGACAT+TGG | + | chr4_3:22381088-22381107 | Msa0634720:intron | 35.0% |
| !! | GTTTTGTACACCTTTTTAGG+TGG | + | chr4_3:22381158-22381177 | Msa0634720:intron | 35.0% |
| GAGAAAAGATCCACCTAAAA+AGG | - | chr4_3:22381171-22381190 | None:intergenic | 35.0% | |
| ! | TAGGACCTACACTTTAGAAA+TGG | - | chr4_3:22381267-22381286 | None:intergenic | 35.0% |
| AAGGATGTATATAGTGCTAG+AGG | + | chr4_3:22381334-22381353 | Msa0634720:intron | 35.0% | |
| AGGATGTATATAGTGCTAGA+GGG | + | chr4_3:22381335-22381354 | Msa0634720:intron | 35.0% | |
| AAGGATGAAAAGAAGCAATC+TGG | + | chr4_3:22381483-22381502 | Msa0634720:CDS | 35.0% | |
| ! | AGCTTGATAGTTTCACAGAA+TGG | + | chr4_3:22381534-22381553 | Msa0634720:CDS | 35.0% |
| ! | TTGATAGTTTCACAGAATGG+TGG | + | chr4_3:22381537-22381556 | Msa0634720:CDS | 35.0% |
| TGATAGTTTCACAGAATGGT+GGG | + | chr4_3:22381538-22381557 | Msa0634720:CDS | 35.0% | |
| GTTATTTGCAGAACTAAAGG+TGG | + | chr4_3:22381578-22381597 | Msa0634720:intron | 35.0% | |
| ! | GCAAAGAAAGATTGATTCCT+TGG | + | chr4_3:22381709-22381728 | Msa0634720:CDS | 35.0% |
| ! | AGAAAGATTGATTCCTTGGA+AGG | + | chr4_3:22381713-22381732 | Msa0634720:CDS | 35.0% |
| GCATATGAAGCAAACATATG+AGG | + | chr4_3:22381769-22381788 | Msa0634720:CDS | 35.0% | |
| !!! | TGTTTTGACTTGATGTCACT+TGG | + | chr4_3:22382067-22382086 | Msa0634720:intron | 35.0% |
| !!! | GTTTTGACTTGATGTCACTT+GGG | + | chr4_3:22382068-22382087 | Msa0634720:intron | 35.0% |
| !! | AGAACTTTTGGTAGCTAAGT+AGG | + | chr4_3:22382256-22382275 | Msa0634720:intron | 35.0% |
| !! | GAACTTTTGGTAGCTAAGTA+GGG | + | chr4_3:22382257-22382276 | Msa0634720:intron | 35.0% |
| !! | AACTTTTGGTAGCTAAGTAG+GGG | + | chr4_3:22382258-22382277 | Msa0634720:intron | 35.0% |
| TAAGTAGGGGAAATTGTACT+GGG | + | chr4_3:22382271-22382290 | Msa0634720:intron | 35.0% | |
| GCAAGTAGATCTTGATCAAA+TGG | + | chr4_3:22382328-22382347 | Msa0634720:intron | 35.0% | |
| !!! | GTAAGCCCTCTTATTGATTT+TGG | + | chr4_3:22382511-22382530 | Msa0634720:intron | 35.0% |
| TGAGAGGAAAAAAGAACTTG+TGG | + | chr4_3:22382537-22382556 | Msa0634720:intron | 35.0% | |
| GTAGATTGAGTCAAAGTTGA+AGG | + | chr4_3:22382850-22382869 | Msa0634720:intron | 35.0% | |
| AGTTGAAGGAGTCAACTAAA+AGG | + | chr4_3:22382864-22382883 | Msa0634720:CDS | 35.0% | |
| AGTCACGGCATTTATACAAA+AGG | - | chr4_3:22383137-22383156 | None:intergenic | 35.0% | |
| AAATAAGTGTGCAGTAGTCA+CGG | - | chr4_3:22383152-22383171 | None:intergenic | 35.0% | |
| GACCTTTACTATGTACAATG+TGG | + | chr4_3:22383198-22383217 | Msa0634720:three_prime_UTR | 35.0% | |
| TGCAGCATCATTGACAATGA+AGG | - | chr4_3:22378696-22378715 | None:intergenic | 40.0% | |
| TCATTGTCAATGATGCTGCA+AGG | + | chr4_3:22378696-22378715 | Msa0634720:CDS | 40.0% | |
| CTCATAAGAGCCATACACTA+TGG | - | chr4_3:22378804-22378823 | None:intergenic | 40.0% | |
| CTTGACACAAAGGATTCTGA+AGG | + | chr4_3:22378934-22378953 | Msa0634720:CDS | 40.0% | |
| TGTGCACGACAATATGTCAA+CGG | + | chr4_3:22379045-22379064 | Msa0634720:CDS | 40.0% | |
| AACATCTAGGAGTGAGGAAA+TGG | + | chr4_3:22379159-22379178 | Msa0634720:CDS | 40.0% | |
| GAGTGAGGAAATGGAAATTG+TGG | + | chr4_3:22379168-22379187 | Msa0634720:CDS | 40.0% | |
| GAAATGGAAATTGTGGGTCA+TGG | + | chr4_3:22379175-22379194 | Msa0634720:CDS | 40.0% | |
| CCCTTTGGTGAGATCAATTA+TGG | + | chr4_3:22379289-22379308 | Msa0634720:intron | 40.0% | |
| GGTTGCTCATAGTTTAGCTA+GGG | - | chr4_3:22379670-22379689 | None:intergenic | 40.0% | |
| TGGTTGCTCATAGTTTAGCT+AGG | - | chr4_3:22379671-22379690 | None:intergenic | 40.0% | |
| ! | ACTTCGAGGTGAAGTTTGTT+AGG | - | chr4_3:22379707-22379726 | None:intergenic | 40.0% |
| AACAAACTTCACCTCGAAGT+TGG | + | chr4_3:22379707-22379726 | Msa0634720:intron | 40.0% | |
| AGACTCATCTACTCTAGTAC+AGG | - | chr4_3:22379811-22379830 | None:intergenic | 40.0% | |
| CTTTGCTGATGCAAACAGAT+GGG | - | chr4_3:22379853-22379872 | None:intergenic | 40.0% | |
| ACTTTGCTGATGCAAACAGA+TGG | - | chr4_3:22379854-22379873 | None:intergenic | 40.0% | |
| TGTTTGCATCAGCAAAGTGA+AGG | + | chr4_3:22379856-22379875 | Msa0634720:intron | 40.0% | |
| GTTTGCATCAGCAAAGTGAA+GGG | + | chr4_3:22379857-22379876 | Msa0634720:intron | 40.0% | |
| !! | GGCAAATTTGACAGTTTTGG+AGG | - | chr4_3:22379907-22379926 | None:intergenic | 40.0% |
| TTATTCGGGCTCAAACGAAA+TGG | - | chr4_3:22379935-22379954 | None:intergenic | 40.0% | |
| TCGTTTGAGCCCGAATAAAT+TGG | + | chr4_3:22379937-22379956 | Msa0634720:intron | 40.0% | |
| CAGTCATGAATTTGAGAGCA+TGG | - | chr4_3:22380149-22380168 | None:intergenic | 40.0% | |
| GAAAACAACAGCGAGAGAAA+AGG | + | chr4_3:22380282-22380301 | Msa0634720:intron | 40.0% | |
| ! | TCATCATATAGTGGAACGGA+GGG | - | chr4_3:22380376-22380395 | None:intergenic | 40.0% |
| AGGATTGAGTCTCTTGGTTA+CGG | - | chr4_3:22380476-22380495 | None:intergenic | 40.0% | |
| TCACCTTGGGAAACACTATT+AGG | - | chr4_3:22380496-22380515 | None:intergenic | 40.0% | |
| ! | TTTGAGGGTTGATTCACCTT+GGG | - | chr4_3:22380509-22380528 | None:intergenic | 40.0% |
| !! | TTTTGAGGGTTGATTCACCT+TGG | - | chr4_3:22380510-22380529 | None:intergenic | 40.0% |
| ! | GGAACAAACACTAGGTTTTG+AGG | - | chr4_3:22380525-22380544 | None:intergenic | 40.0% |
| !! | GTCTCTTTGGAACAAACACT+AGG | - | chr4_3:22380533-22380552 | None:intergenic | 40.0% |
| TGTAAACCTTGAGATAGAGG+GGG | - | chr4_3:22380609-22380628 | None:intergenic | 40.0% | |
| GTGTAAACCTTGAGATAGAG+GGG | - | chr4_3:22380610-22380629 | None:intergenic | 40.0% | |
| CAGTGTAAACCTTGAGATAG+AGG | - | chr4_3:22380612-22380631 | None:intergenic | 40.0% | |
| AAATAACAGCACGCAACATC+GGG | + | chr4_3:22380708-22380727 | Msa0634720:intron | 40.0% | |
| !! | TAAAAATCGGCGACCGATTT+TGG | - | chr4_3:22380744-22380763 | None:intergenic | 40.0% |
| GCTGTTGCTGCTGTAAAAAT+CGG | - | chr4_3:22380757-22380776 | None:intergenic | 40.0% | |
| TTCCAACATGCGTCCAAAAT+CGG | + | chr4_3:22380777-22380796 | Msa0634720:intron | 40.0% | |
| TTTGCTGGAACTGGGAAAAT+CGG | - | chr4_3:22380806-22380825 | None:intergenic | 40.0% | |
| GACTCAAAATTGGAGTTTGG+AGG | - | chr4_3:22380840-22380859 | None:intergenic | 40.0% | |
| !! | CATGACACAAAGGGTTTTGA+AGG | + | chr4_3:22380925-22380944 | Msa0634720:intron | 40.0% |
| GAGTCATCTTTCTTGGTTGA+TGG | + | chr4_3:22381066-22381085 | Msa0634720:intron | 40.0% | |
| TTGGTAGACGTTTGGACTTA+AGG | + | chr4_3:22381107-22381126 | Msa0634720:intron | 40.0% | |
| ACGTTTGGACTTAAGGAGTT+TGG | + | chr4_3:22381114-22381133 | Msa0634720:intron | 40.0% | |
| AAAGGAGTGAGTGCTAGATT+GGG | - | chr4_3:22381202-22381221 | None:intergenic | 40.0% | |
| TAAAGGAGTGAGTGCTAGAT+TGG | - | chr4_3:22381203-22381222 | None:intergenic | 40.0% | |
| TCTAGCACTCACTCCTTTAT+TGG | + | chr4_3:22381204-22381223 | Msa0634720:intron | 40.0% | |
| CTAGCACTCACTCCTTTATT+GGG | + | chr4_3:22381205-22381224 | Msa0634720:intron | 40.0% | |
| TATGTCCCACCACTTTATGT+GGG | + | chr4_3:22381239-22381258 | Msa0634720:intron | 40.0% | |
| GAAATGGAACCCACATAAAG+TGG | - | chr4_3:22381251-22381270 | None:intergenic | 40.0% | |
| !! | GGGTTCCATTTCTAAAGTGT+AGG | + | chr4_3:22381259-22381278 | Msa0634720:intron | 40.0% |
| TCTCTTAGACAACACGACAA+AGG | + | chr4_3:22381464-22381483 | Msa0634720:CDS | 40.0% | |
| TTGATTGCAGAAAGGAGCAA+TGG | + | chr4_3:22381673-22381692 | Msa0634720:intron | 40.0% | |
| ! | TAGACACGTGCATCCATTTT+TGG | + | chr4_3:22382165-22382184 | Msa0634720:intron | 40.0% |
| !! | AGACACGTGCATCCATTTTT+GGG | + | chr4_3:22382166-22382185 | Msa0634720:intron | 40.0% |
| AAACAGTACACGCCCAAAAA+TGG | - | chr4_3:22382181-22382200 | None:intergenic | 40.0% | |
| ! | GTGTACTGTTTTCTTCCACA+AGG | + | chr4_3:22382190-22382209 | Msa0634720:intron | 40.0% |
| GTTCTGACTTCTGACTCTAT+AGG | - | chr4_3:22382241-22382260 | None:intergenic | 40.0% | |
| ! | GAGTCAGAAGTCAGAACTTT+TGG | + | chr4_3:22382244-22382263 | Msa0634720:intron | 40.0% |
| CTAAGTAGGGGAAATTGTAC+TGG | + | chr4_3:22382270-22382289 | Msa0634720:intron | 40.0% | |
| TCAAGATGTGATGCCAAACT+AGG | - | chr4_3:22382375-22382394 | None:intergenic | 40.0% | |
| AGAACTTGTGGAGATATGGA+TGG | + | chr4_3:22382549-22382568 | Msa0634720:intron | 40.0% | |
| GAACTTGTGGAGATATGGAT+GGG | + | chr4_3:22382550-22382569 | Msa0634720:intron | 40.0% | |
| CTGGAGAAACTATCAAGAGT+AGG | + | chr4_3:22382584-22382603 | Msa0634720:intron | 40.0% | |
| GTTGTTCTATGCTTGAACTC+TGG | + | chr4_3:22382719-22382738 | Msa0634720:intron | 40.0% | |
| AGCAGAAGACAATGCAAAGT+TGG | + | chr4_3:22382928-22382947 | Msa0634720:CDS | 40.0% | |
| ACTAAGGAAGAATCTTGAGG+AGG | + | chr4_3:22382982-22383001 | Msa0634720:CDS | 40.0% | |
| AGCGCTACTAGATCATAGAA+TGG | - | chr4_3:22383047-22383066 | None:intergenic | 40.0% | |
| ATGAGCCTCAACCTGAGATT+TGG | + | chr4_3:22378819-22378838 | Msa0634720:CDS | 45.0% | |
| GAAGGACATTGGTAGACGTT+TGG | + | chr4_3:22379108-22379127 | Msa0634720:CDS | 45.0% | |
| TCACTCCTAGATGTTGTTGG+AGG | - | chr4_3:22379154-22379173 | None:intergenic | 45.0% | |
| TCCAACAACATCTAGGAGTG+AGG | + | chr4_3:22379153-22379172 | Msa0634720:CDS | 45.0% | |
| TCCTCACTCCTAGATGTTGT+TGG | - | chr4_3:22379157-22379176 | None:intergenic | 45.0% | |
| GGCCTGATTTACTACCTTGA+AGG | + | chr4_3:22379317-22379336 | Msa0634720:intron | 45.0% | |
| TGCTCATAGTTTAGCTAGGG+CGG | - | chr4_3:22379667-22379686 | None:intergenic | 45.0% | |
| TGTTAGGAGACAAGCGAACA+TGG | - | chr4_3:22379691-22379710 | None:intergenic | 45.0% | |
| AATTCTGAATCACCATGGCC+CGG | + | chr4_3:22379774-22379793 | Msa0634720:intron | 45.0% | |
| AAAGTGAAGGGCCTCAAGTA+AGG | + | chr4_3:22379869-22379888 | Msa0634720:intron | 45.0% | |
| GGCTCAAACGAAATGGCAAA+GGG | - | chr4_3:22379928-22379947 | None:intergenic | 45.0% | |
| ACTCTCGCGGCCAATTTATT+CGG | - | chr4_3:22379950-22379969 | None:intergenic | 45.0% | |
| TGTTGTGTTAGAGACTCTCG+CGG | - | chr4_3:22379963-22379982 | None:intergenic | 45.0% | |
| ! | CGCACGCTTCGATTCATTTT+GGG | - | chr4_3:22380063-22380082 | None:intergenic | 45.0% |
| CTCATAAGGGCCATACACTA+TGG | - | chr4_3:22380086-22380105 | None:intergenic | 45.0% | |
| !! | TCTCAGGTTGAGGCTCATAA+GGG | - | chr4_3:22378817-22378836 | None:intergenic | 45.0% |
| !! | ATCTCAGGTTGAGGCTCATA+AGG | - | chr4_3:22378818-22378837 | None:intergenic | 45.0% |
| ATGAGCCTCAACCTGAGATT+TGG | + | chr4_3:22378819-22378838 | Msa0634720:CDS | 45.0% | |
| ! | TATGGCCAAATCTCAGGTTG+AGG | - | chr4_3:22380109-22380128 | None:intergenic | 45.0% |
| TCTGCTTATGGCCAAATCTC+AGG | - | chr4_3:22380115-22380134 | None:intergenic | 45.0% | |
| TGAGATTTGGCCATAAGCAG+AGG | + | chr4_3:22380114-22380133 | Msa0634720:intron | 45.0% | |
| GAGATTTGGCCATAAGCAGA+GGG | + | chr4_3:22380115-22380134 | Msa0634720:intron | 45.0% | |
| AGATTTGGCCATAAGCAGAG+GGG | + | chr4_3:22380116-22380135 | Msa0634720:intron | 45.0% | |
| ACAACTTGATGTGTGGAGCA+AGG | + | chr4_3:22380200-22380219 | Msa0634720:intron | 45.0% | |
| CAACTTGATGTGTGGAGCAA+GGG | + | chr4_3:22380201-22380220 | Msa0634720:intron | 45.0% | |
| AGGTCAATTTGGACCGAACT+TGG | - | chr4_3:22380335-22380354 | None:intergenic | 45.0% | |
| GGTCCAAATTGACCTAGTCT+GGG | + | chr4_3:22380340-22380359 | Msa0634720:intron | 45.0% | |
| GTCCAAATTGACCTAGTCTG+GGG | + | chr4_3:22380341-22380360 | Msa0634720:intron | 45.0% | |
| ! | CTCATCATATAGTGGAACGG+AGG | - | chr4_3:22380377-22380396 | None:intergenic | 45.0% |
| GGATTTGGGTAGAATTAGGC+GGG | - | chr4_3:22380443-22380462 | None:intergenic | 45.0% | |
| GGGATTTGGGTAGAATTAGG+CGG | - | chr4_3:22380444-22380463 | None:intergenic | 45.0% | |
| GCTGGGATTTGGGTAGAATT+AGG | - | chr4_3:22380447-22380466 | None:intergenic | 45.0% | |
| GGATTGAGTCTCTTGGTTAC+GGG | - | chr4_3:22380475-22380494 | None:intergenic | 45.0% | |
| GCTGGAACAAGGGTTTAGAA+AGG | - | chr4_3:22380587-22380606 | None:intergenic | 45.0% | |
| !! | CGACCGATTTTGGAAAATCG+GGG | - | chr4_3:22380734-22380753 | None:intergenic | 45.0% |
| !! | GCGACCGATTTTGGAAAATC+GGG | - | chr4_3:22380735-22380754 | None:intergenic | 45.0% |
| !! | GGCGACCGATTTTGGAAAAT+CGG | - | chr4_3:22380736-22380755 | None:intergenic | 45.0% |
| GAGGCCAAAATCATGTTTGC+TGG | - | chr4_3:22380821-22380840 | None:intergenic | 45.0% | |
| GATGGACATTGGTAGACGTT+TGG | + | chr4_3:22381099-22381118 | Msa0634720:intron | 45.0% | |
| GTATGTCCCACCACTTTATG+TGG | + | chr4_3:22381238-22381257 | Msa0634720:intron | 45.0% | |
| TGGAACCCACATAAAGTGGT+GGG | - | chr4_3:22381247-22381266 | None:intergenic | 45.0% | |
| ATGGAACCCACATAAAGTGG+TGG | - | chr4_3:22381248-22381267 | None:intergenic | 45.0% | |
| TAGCAAACCCTCTCTTTGTG+TGG | + | chr4_3:22381429-22381448 | Msa0634720:intron | 45.0% | |
| AGCAAACCCTCTCTTTGTGT+GGG | + | chr4_3:22381430-22381449 | Msa0634720:intron | 45.0% | |
| ACGATTCCCACACAAAGAGA+GGG | - | chr4_3:22381439-22381458 | None:intergenic | 45.0% | |
| AACGATTCCCACACAAAGAG+AGG | - | chr4_3:22381440-22381459 | None:intergenic | 45.0% | |
| TTCTTCTGACTGTCCTTCCA+AGG | - | chr4_3:22381729-22381748 | None:intergenic | 45.0% | |
| TAGGGGAAATTGTACTGGGA+AGG | + | chr4_3:22382275-22382294 | Msa0634720:intron | 45.0% | |
| TGGATGGGAGATATGTTAGC+TGG | + | chr4_3:22382565-22382584 | Msa0634720:intron | 45.0% | |
| GAAGGAGTCAACTAAAAGGC+TGG | + | chr4_3:22382868-22382887 | Msa0634720:CDS | 45.0% | |
| !!! | TATTTTATTTTAATTCTTTT+TGG | + | chr4_3:22381903-22381922 | Msa0634720:intron | 5.0% |
| ACAGGCTTCAATGCCACAGA+GGG | - | chr4_3:22378780-22378799 | None:intergenic | 50.0% | |
| GAAGCCTGTGCCATAGTGTA+TGG | + | chr4_3:22378791-22378810 | Msa0634720:CDS | 50.0% | |
| AGAGCCATACACTATGGCAC+AGG | - | chr4_3:22378798-22378817 | None:intergenic | 50.0% | |
| ! | GAAGGCCAAATCTCAGGTTG+AGG | - | chr4_3:22378827-22378846 | None:intergenic | 50.0% |
| TCTGGTGAAGGCCAAATCTC+AGG | - | chr4_3:22378833-22378852 | None:intergenic | 50.0% | |
| ! | TGAGATTTGGCCTTCACCAG+AGG | + | chr4_3:22378832-22378851 | Msa0634720:CDS | 50.0% |
| ! | GAGATTTGGCCTTCACCAGA+GGG | + | chr4_3:22378833-22378852 | Msa0634720:CDS | 50.0% |
| ! | AGATTTGGCCTTCACCAGAG+GGG | + | chr4_3:22378834-22378853 | Msa0634720:CDS | 50.0% |
| GGACATTGGTAGACGTTTGG+CGG | + | chr4_3:22379111-22379130 | Msa0634720:CDS | 50.0% | |
| CTAGATGTTGTTGGAGGTGG+TGG | - | chr4_3:22379148-22379167 | None:intergenic | 50.0% | |
| CACCACCTCCAACAACATCT+AGG | + | chr4_3:22379146-22379165 | Msa0634720:CDS | 50.0% | |
| CTCCTAGATGTTGTTGGAGG+TGG | - | chr4_3:22379151-22379170 | None:intergenic | 50.0% | |
| ATTGTGGGTCATGGCCATGT+TGG | + | chr4_3:22379184-22379203 | Msa0634720:CDS | 50.0% | |
| TTGTGGGTCATGGCCATGTT+GGG | + | chr4_3:22379185-22379204 | Msa0634720:CDS | 50.0% | |
| !! | TTGATGGACTCAATGGTGGC+TGG | + | chr4_3:22379247-22379266 | Msa0634720:CDS | 50.0% |
| ACGGTGAATAGCCCAAGAAC+AGG | + | chr4_3:22379641-22379660 | Msa0634720:intron | 50.0% | |
| AGTACAGGCTCTATCGTCTC+CGG | - | chr4_3:22379796-22379815 | None:intergenic | 50.0% | |
| ! | AGTCTGACTCGAACACAACC+CGG | + | chr4_3:22379826-22379845 | Msa0634720:intron | 50.0% |
| TGATGCAAACAGATGGGACC+GGG | - | chr4_3:22379847-22379866 | None:intergenic | 50.0% | |
| CTGATGCAAACAGATGGGAC+CGG | - | chr4_3:22379848-22379867 | None:intergenic | 50.0% | |
| !!! | TTTGACAGTTTTGGAGGGGG+AGG | - | chr4_3:22379901-22379920 | None:intergenic | 50.0% |
| GGGCTCAAACGAAATGGCAA+AGG | - | chr4_3:22379929-22379948 | None:intergenic | 50.0% | |
| CTCTCGCGGCCAATTTATTC+GGG | - | chr4_3:22379949-22379968 | None:intergenic | 50.0% | |
| GACGTGGTTGAAGTGCAATG+TGG | - | chr4_3:22380027-22380046 | None:intergenic | 50.0% | |
| CACTTCAACCACGTCTCGTT+CGG | + | chr4_3:22380032-22380051 | Msa0634720:intron | 50.0% | |
| ! | GCGCACGCTTCGATTCATTT+TGG | - | chr4_3:22380064-22380083 | None:intergenic | 50.0% |
| GATTTGGCCATAAGCAGAGG+GGG | + | chr4_3:22380117-22380136 | Msa0634720:intron | 50.0% | |
| CGGTCCAAATTGACCTAGTC+TGG | + | chr4_3:22380339-22380358 | Msa0634720:intron | 50.0% | |
| CTCCCCAGACTAGGTCAATT+TGG | - | chr4_3:22380346-22380365 | None:intergenic | 50.0% | |
| AGTCTCTTGGTTACGGGAAG+AGG | - | chr4_3:22380469-22380488 | None:intergenic | 50.0% | |
| ! | GGGCCCCGATTTTCCAAAAT+CGG | + | chr4_3:22380728-22380747 | Msa0634720:intron | 50.0% |
| !! | GGAAAATCGGTGGCCGATTT+TGG | - | chr4_3:22380793-22380812 | None:intergenic | 50.0% |
| AACCATTACCACCTCGCTTG+CGG | - | chr4_3:22383021-22383040 | None:intergenic | 50.0% | |
| GCTGAACTTAGCACCCTCTG+TGG | + | chr4_3:22378764-22378783 | Msa0634720:CDS | 55.0% | |
| CACAGGCTTCAATGCCACAG+AGG | - | chr4_3:22378781-22378800 | None:intergenic | 55.0% | |
| ! | GATTTGGCCTTCACCAGAGG+GGG | + | chr4_3:22378835-22378854 | Msa0634720:CDS | 55.0% |
| ! | GATGTTGTTGGAGGTGGTGG+TGG | - | chr4_3:22379145-22379164 | None:intergenic | 55.0% |
| CCTGTCTGTAGTTTCGGCTC+CGG | + | chr4_3:22379459-22379478 | Msa0634720:intron | 55.0% | |
| CTGTCTGTAGTTTCGGCTCC+GGG | + | chr4_3:22379460-22379479 | Msa0634720:intron | 55.0% | |
| GTACAGGCTCTATCGTCTCC+GGG | - | chr4_3:22379795-22379814 | None:intergenic | 55.0% | |
| ! | GGAGGCAGTAGCCTTACTTG+AGG | - | chr4_3:22379883-22379902 | None:intergenic | 55.0% |
| GAAGCGTGCGCCATAGTGTA+TGG | + | chr4_3:22380073-22380092 | Msa0634720:intron | 55.0% | |
| GATTGGACCCCCTCTGCTTA+TGG | - | chr4_3:22380127-22380146 | None:intergenic | 55.0% | |
| ACGGGAAGAGGCTGGGATTT+GGG | - | chr4_3:22380457-22380476 | None:intergenic | 55.0% | |
| TACGGGAAGAGGCTGGGATT+TGG | - | chr4_3:22380458-22380477 | None:intergenic | 55.0% | |
| CTTGGTTACGGGAAGAGGCT+GGG | - | chr4_3:22380464-22380483 | None:intergenic | 55.0% | |
| TCTTGGTTACGGGAAGAGGC+TGG | - | chr4_3:22380465-22380484 | None:intergenic | 55.0% | |
| GATAGAGGGGGCTGGAACAA+GGG | - | chr4_3:22380597-22380616 | None:intergenic | 55.0% | |
| AGATAGAGGGGGCTGGAACA+AGG | - | chr4_3:22380598-22380617 | None:intergenic | 55.0% | |
| TTCCAGCCCCCTCTATCTCA+AGG | + | chr4_3:22380600-22380619 | Msa0634720:intron | 55.0% | |
| AACCTTGAGATAGAGGGGGC+TGG | - | chr4_3:22380605-22380624 | None:intergenic | 55.0% | |
| !! | GGCCGATTTTGGACGCATGT+TGG | - | chr4_3:22380782-22380801 | None:intergenic | 55.0% |
| GCTGGAACTGGGAAAATCGG+TGG | - | chr4_3:22380803-22380822 | None:intergenic | 55.0% | |
| GGAGCAATGGAACTGCGTAG+CGG | + | chr4_3:22381686-22381705 | Msa0634720:CDS | 55.0% | |
| GAGCAATGGAACTGCGTAGC+GGG | + | chr4_3:22381687-22381706 | Msa0634720:CDS | 55.0% | |
| CATGAAGAACTCCGCAAGCG+AGG | + | chr4_3:22383007-22383026 | Msa0634720:CDS | 55.0% | |
| GATTGGACCCCCTCTGGTGA+AGG | - | chr4_3:22378845-22378864 | None:intergenic | 60.0% | |
| AGCACAGATTGGACCCCCTC+TGG | - | chr4_3:22378851-22378870 | None:intergenic | 60.0% | |
| GTGCACGAGACAGTGCCCTT+TGG | + | chr4_3:22379274-22379293 | Msa0634720:CDS | 60.0% | |
| CCGGAGCCGAAACTACAGAC+AGG | - | chr4_3:22379462-22379481 | None:intergenic | 60.0% | |
| AGCTAGGGCGGCCTGTTCTT+GGG | - | chr4_3:22379655-22379674 | None:intergenic | 60.0% | |
| TAGCTAGGGCGGCCTGTTCT+TGG | - | chr4_3:22379656-22379675 | None:intergenic | 60.0% | |
| GGGAGAAACCGAACGAGACG+TGG | - | chr4_3:22380043-22380062 | None:intergenic | 60.0% | |
| GAAGAACTCCGCAAGCGAGG+TGG | + | chr4_3:22383010-22383029 | Msa0634720:CDS | 60.0% | |
| CTCCGCAAGCGAGGTGGTAA+TGG | + | chr4_3:22383016-22383035 | Msa0634720:CDS | 60.0% | |
| GCTCTATCGTCTCCGGGCCA+TGG | - | chr4_3:22379789-22379808 | None:intergenic | 65.0% | |
| GGCTGCTCTCTCCCCAGACT+AGG | - | chr4_3:22380355-22380374 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 22378668 | 22383231 | 22378668 | ID=Msa0634720;Name=Msa0634720 |
| chr4_3 | mRNA | 22378668 | 22383231 | 22378668 | ID=Msa0634720-mRNA-1;Parent=Msa0634720;Name=Msa0634720-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.6|0.8|0.5|0.4|5|177|386 |
| chr4_3 | exon | 22378668 | 22379295 | 22378668 | ID=Msa0634720-mRNA-1:exon:5784;Parent=Msa0634720-mRNA-1 |
| chr4_3 | exon | 22379415 | 22379446 | 22379415 | ID=Msa0634720-mRNA-1:exon:5785;Parent=Msa0634720-mRNA-1 |
| chr4_3 | exon | 22381432 | 22381596 | 22381432 | ID=Msa0634720-mRNA-1:exon:5786;Parent=Msa0634720-mRNA-1 |
| chr4_3 | exon | 22381683 | 22381817 | 22381683 | ID=Msa0634720-mRNA-1:exon:5787;Parent=Msa0634720-mRNA-1 |
| chr4_3 | exon | 22382854 | 22383231 | 22382854 | ID=Msa0634720-mRNA-1:exon:5788;Parent=Msa0634720-mRNA-1 |
| chr4_3 | CDS | 22378668 | 22379295 | 22378668 | ID=Msa0634720-mRNA-1:cds;Parent=Msa0634720-mRNA-1 |
| chr4_3 | CDS | 22379415 | 22379446 | 22379415 | ID=Msa0634720-mRNA-1:cds;Parent=Msa0634720-mRNA-1 |
| chr4_3 | CDS | 22381432 | 22381596 | 22381432 | ID=Msa0634720-mRNA-1:cds;Parent=Msa0634720-mRNA-1 |
| chr4_3 | CDS | 22381683 | 22381817 | 22381683 | ID=Msa0634720-mRNA-1:cds;Parent=Msa0634720-mRNA-1 |
| chr4_3 | CDS | 22382854 | 22383054 | 22382854 | ID=Msa0634720-mRNA-1:cds;Parent=Msa0634720-mRNA-1 |
| chr4_3 | three_prime_UTR | 22383055 | 22383231 | 22383055 | ID=Msa0634720-mRNA-1:three_prime_utr;Parent=Msa0634720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
