Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638410 | AES90556.1 | 82.243 | 107 | 8 | 2 | 1 | 100 | 1 | 103 | 3.36e-52 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638410 | sp|Q9SI38|ANR1_ARATH | 63.000 | 100 | 25 | 1 | 1 | 100 | 1 | 88 | 1.40e-36 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638410 | G7JU22 | 82.243 | 107 | 8 | 2 | 1 | 100 | 1 | 103 | 1.61e-52 | 171 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0638410 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638410 | MtrunA17_Chr4g0049541 | 85.000 | 100 | 2 | 1 | 1 | 100 | 1 | 87 | 5.54e-54 | 167 |
| Msa0638410 | MtrunA17_Chr2g0279821 | 66.000 | 100 | 21 | 1 | 1 | 100 | 1 | 87 | 6.24e-39 | 129 |
| Msa0638410 | MtrunA17_Chr5g0411691 | 64.000 | 100 | 22 | 2 | 1 | 100 | 1 | 86 | 5.45e-36 | 122 |
| Msa0638410 | MtrunA17_Chr5g0427921 | 78.689 | 61 | 13 | 0 | 1 | 61 | 1 | 61 | 8.74e-31 | 103 |
| Msa0638410 | MtrunA17_Chr1g0173161 | 68.852 | 61 | 19 | 0 | 1 | 61 | 1 | 61 | 6.99e-27 | 94.4 |
| Msa0638410 | MtrunA17_Chr3g0077501 | 53.933 | 89 | 28 | 1 | 1 | 89 | 1 | 76 | 4.05e-26 | 96.3 |
| Msa0638410 | MtrunA17_Chr5g0427401 | 53.333 | 90 | 27 | 2 | 1 | 90 | 1 | 75 | 7.30e-26 | 95.9 |
| Msa0638410 | MtrunA17_Chr4g0020221 | 52.174 | 92 | 31 | 1 | 1 | 92 | 1 | 79 | 9.87e-26 | 96.3 |
| Msa0638410 | MtrunA17_Chr7g0246381 | 59.722 | 72 | 29 | 0 | 1 | 72 | 1 | 72 | 1.90e-25 | 90.5 |
| Msa0638410 | MtrunA17_Chr4g0049901 | 53.333 | 90 | 29 | 1 | 1 | 90 | 27 | 103 | 1.35e-24 | 92.8 |
| Msa0638410 | MtrunA17_Chr8g0380021 | 52.174 | 92 | 31 | 1 | 1 | 92 | 17 | 95 | 1.88e-24 | 92.4 |
| Msa0638410 | MtrunA17_Chr1g0164791 | 54.762 | 84 | 27 | 1 | 1 | 84 | 1 | 73 | 2.40e-24 | 92.0 |
| Msa0638410 | MtrunA17_Chr5g0412461 | 48.000 | 100 | 39 | 1 | 1 | 100 | 1 | 87 | 2.63e-24 | 91.7 |
| Msa0638410 | MtrunA17_Chr5g0412271 | 48.000 | 100 | 39 | 1 | 1 | 100 | 1 | 87 | 4.12e-24 | 91.3 |
| Msa0638410 | MtrunA17_Chr3g0097101 | 53.571 | 84 | 26 | 1 | 1 | 84 | 16 | 86 | 5.99e-24 | 91.3 |
| Msa0638410 | MtrunA17_Chr7g0246431 | 55.952 | 84 | 24 | 1 | 1 | 84 | 1 | 71 | 6.69e-24 | 90.5 |
| Msa0638410 | MtrunA17_Chr2g0284911 | 53.409 | 88 | 28 | 1 | 1 | 88 | 16 | 90 | 9.29e-24 | 90.9 |
| Msa0638410 | MtrunA17_Chr7g0220121 | 50.000 | 84 | 30 | 1 | 1 | 84 | 1 | 72 | 3.43e-23 | 89.4 |
| Msa0638410 | MtrunA17_Chr4g0061691 | 50.000 | 84 | 30 | 2 | 1 | 84 | 1 | 72 | 4.97e-23 | 88.6 |
| Msa0638410 | MtrunA17_Chr2g0308251 | 52.703 | 74 | 28 | 1 | 1 | 74 | 1 | 67 | 5.77e-23 | 84.3 |
| Msa0638410 | MtrunA17_Chr8g0351041 | 68.333 | 60 | 19 | 0 | 1 | 60 | 1 | 60 | 7.16e-23 | 86.7 |
| Msa0638410 | MtrunA17_Chr8g0377561 | 46.392 | 97 | 40 | 1 | 1 | 85 | 1 | 97 | 7.20e-23 | 84.7 |
| Msa0638410 | MtrunA17_Chr4g0018421 | 51.163 | 86 | 30 | 1 | 1 | 86 | 1 | 74 | 7.58e-23 | 87.4 |
| Msa0638410 | MtrunA17_Chr3g0142191 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 8.35e-23 | 87.8 |
| Msa0638410 | MtrunA17_Chr3g0125241 | 64.407 | 59 | 21 | 0 | 1 | 59 | 26 | 84 | 1.21e-22 | 87.0 |
| Msa0638410 | MtrunA17_Chr4g0061671 | 43.750 | 96 | 42 | 1 | 1 | 96 | 1 | 84 | 1.90e-22 | 85.9 |
| Msa0638410 | MtrunA17_Chr4g0057151 | 66.667 | 60 | 20 | 0 | 1 | 60 | 1 | 60 | 1.99e-22 | 86.3 |
| Msa0638410 | MtrunA17_Chr8g0351051 | 66.102 | 59 | 20 | 0 | 1 | 59 | 1 | 59 | 2.88e-22 | 87.0 |
| Msa0638410 | MtrunA17_Chr6g0474371 | 65.000 | 60 | 21 | 0 | 1 | 60 | 1 | 60 | 2.90e-22 | 85.9 |
| Msa0638410 | MtrunA17_Chr5g0420091 | 46.154 | 104 | 37 | 3 | 1 | 100 | 1 | 89 | 3.08e-22 | 86.3 |
| Msa0638410 | MtrunA17_Chr6g0455511 | 46.000 | 100 | 42 | 1 | 1 | 100 | 1 | 88 | 3.43e-22 | 86.7 |
| Msa0638410 | MtrunA17_Chr8g0366231 | 48.810 | 84 | 31 | 1 | 1 | 84 | 1 | 72 | 5.44e-22 | 85.9 |
| Msa0638410 | MtrunA17_Chr7g0220111 | 45.000 | 100 | 43 | 1 | 1 | 100 | 1 | 88 | 5.97e-22 | 86.3 |
| Msa0638410 | MtrunA17_Chr8g0351031 | 66.667 | 60 | 20 | 0 | 1 | 60 | 1 | 60 | 6.00e-22 | 85.5 |
| Msa0638410 | MtrunA17_Chr5g0420081 | 61.667 | 60 | 23 | 0 | 1 | 60 | 1 | 60 | 1.10e-21 | 85.1 |
| Msa0638410 | MtrunA17_Chr1g0204111 | 63.333 | 60 | 22 | 0 | 1 | 60 | 17 | 76 | 1.74e-21 | 85.1 |
| Msa0638410 | MtrunA17_Chr3g0122251 | 61.667 | 60 | 23 | 0 | 1 | 60 | 1 | 60 | 3.22e-21 | 84.3 |
| Msa0638410 | MtrunA17_Chr5g0404951 | 47.727 | 88 | 35 | 1 | 1 | 88 | 1 | 77 | 1.27e-20 | 82.4 |
| Msa0638410 | MtrunA17_Chr1g0159661 | 57.627 | 59 | 25 | 0 | 1 | 59 | 1 | 59 | 3.31e-20 | 80.1 |
| Msa0638410 | MtrunA17_Chr5g0425191 | 60.656 | 61 | 24 | 0 | 1 | 61 | 1 | 61 | 8.75e-20 | 77.0 |
| Msa0638410 | MtrunA17_Chr4g0044071 | 57.377 | 61 | 26 | 0 | 1 | 61 | 1 | 61 | 4.37e-19 | 75.5 |
| Msa0638410 | MtrunA17_Chr1g0166611 | 67.347 | 49 | 16 | 0 | 13 | 61 | 17 | 65 | 8.67e-19 | 75.5 |
| Msa0638410 | MtrunA17_Chr3g0134451 | 56.716 | 67 | 29 | 0 | 1 | 67 | 1 | 67 | 3.00e-18 | 77.4 |
| Msa0638410 | MtrunA17_Chr8g0357771 | 53.448 | 58 | 27 | 0 | 1 | 58 | 1 | 58 | 6.23e-16 | 68.9 |
| Msa0638410 | MtrunA17_Chr1g0175611 | 47.826 | 69 | 29 | 1 | 1 | 62 | 1 | 69 | 7.59e-16 | 68.6 |
| Msa0638410 | MtrunA17_Chr1g0180591 | 46.377 | 69 | 30 | 1 | 1 | 62 | 1 | 69 | 9.29e-16 | 68.6 |
| Msa0638410 | MtrunA17_Chr4g0052061 | 49.206 | 63 | 32 | 0 | 1 | 63 | 1 | 63 | 1.15e-15 | 67.8 |
| Msa0638410 | MtrunA17_Chr8g0376821 | 53.448 | 58 | 27 | 0 | 1 | 58 | 1 | 58 | 1.41e-15 | 68.2 |
| Msa0638410 | MtrunA17_Chr1g0169761 | 53.448 | 58 | 27 | 0 | 1 | 58 | 1 | 58 | 3.13e-15 | 67.0 |
| Msa0638410 | MtrunA17_Chr1g0175601 | 53.448 | 58 | 27 | 0 | 1 | 58 | 1 | 58 | 5.65e-15 | 66.6 |
| Msa0638410 | MtrunA17_Chr4g0052081 | 46.032 | 63 | 34 | 0 | 1 | 63 | 1 | 63 | 7.50e-15 | 66.2 |
| Msa0638410 | MtrunA17_Chr2g0333981 | 52.727 | 55 | 26 | 0 | 1 | 55 | 11 | 65 | 1.34e-14 | 65.5 |
| Msa0638410 | MtrunA17_Chr4g0074101 | 50.000 | 58 | 29 | 0 | 1 | 58 | 1 | 58 | 1.73e-14 | 65.5 |
| Msa0638410 | MtrunA17_Chr3g0099421 | 43.210 | 81 | 33 | 1 | 2 | 82 | 34 | 101 | 2.66e-14 | 65.9 |
| Msa0638410 | MtrunA17_Chr5g0417661 | 54.717 | 53 | 24 | 0 | 1 | 53 | 56 | 108 | 2.77e-14 | 63.5 |
| Msa0638410 | MtrunA17_Chr2g0317481 | 38.043 | 92 | 44 | 2 | 2 | 93 | 9 | 87 | 2.96e-14 | 65.5 |
| Msa0638410 | MtrunA17_Chr2g0317451 | 38.043 | 92 | 44 | 2 | 2 | 93 | 9 | 87 | 3.09e-14 | 65.5 |
| Msa0638410 | MtrunA17_Chr5g0419601 | 40.698 | 86 | 38 | 1 | 1 | 86 | 8 | 80 | 3.92e-14 | 65.1 |
| Msa0638410 | MtrunA17_Chr8g0379021 | 50.877 | 57 | 28 | 0 | 2 | 58 | 12 | 68 | 4.21e-14 | 64.3 |
| Msa0638410 | MtrunA17_Chr4g0060841 | 54.717 | 53 | 24 | 0 | 1 | 53 | 1 | 53 | 8.90e-14 | 65.1 |
| Msa0638410 | MtrunA17_Chr5g0422421 | 52.632 | 57 | 27 | 0 | 2 | 58 | 9 | 65 | 1.00e-13 | 64.3 |
| Msa0638410 | MtrunA17_Chr8g0356071 | 38.298 | 94 | 53 | 2 | 1 | 91 | 1 | 92 | 1.21e-13 | 62.8 |
| Msa0638410 | MtrunA17_Chr1g0208561 | 38.824 | 85 | 39 | 1 | 2 | 86 | 9 | 80 | 1.60e-13 | 63.5 |
| Msa0638410 | MtrunA17_Chr2g0292791 | 50.877 | 57 | 28 | 0 | 2 | 58 | 9 | 65 | 1.67e-13 | 63.5 |
| Msa0638410 | MtrunA17_Chr1g0149391 | 50.877 | 57 | 28 | 0 | 2 | 58 | 9 | 65 | 1.89e-13 | 63.5 |
| Msa0638410 | MtrunA17_Chr3g0089141 | 38.824 | 85 | 39 | 1 | 2 | 86 | 9 | 80 | 2.01e-13 | 63.2 |
| Msa0638410 | MtrunA17_Chr2g0325971 | 38.824 | 85 | 39 | 1 | 2 | 86 | 9 | 80 | 2.19e-13 | 63.2 |
| Msa0638410 | MtrunA17_Chr8g0355091 | 39.506 | 81 | 36 | 1 | 2 | 82 | 9 | 76 | 2.71e-13 | 63.2 |
| Msa0638410 | MtrunA17_Chr1g0206701 | 39.506 | 81 | 36 | 1 | 2 | 82 | 9 | 76 | 3.03e-13 | 62.8 |
| Msa0638410 | MtrunA17_Chr4g0018951 | 43.210 | 81 | 37 | 2 | 15 | 88 | 25 | 103 | 3.15e-13 | 61.6 |
| Msa0638410 | MtrunA17_Chr3g0099411 | 49.123 | 57 | 29 | 0 | 2 | 58 | 9 | 65 | 3.27e-13 | 62.4 |
| Msa0638410 | MtrunA17_Chr1g0187361 | 49.123 | 57 | 29 | 0 | 2 | 58 | 9 | 65 | 4.31e-13 | 62.4 |
| Msa0638410 | MtrunA17_Chr1g0206721 | 49.123 | 57 | 29 | 0 | 2 | 58 | 9 | 65 | 4.63e-13 | 62.4 |
| Msa0638410 | MtrunA17_Chr5g0422941 | 40.741 | 81 | 35 | 2 | 2 | 82 | 9 | 76 | 4.78e-13 | 62.4 |
| Msa0638410 | MtrunA17_Chr1g0188671 | 49.123 | 57 | 29 | 0 | 2 | 58 | 47 | 103 | 6.08e-13 | 62.4 |
| Msa0638410 | MtrunA17_Chr1g0206991 | 49.123 | 57 | 29 | 0 | 2 | 58 | 9 | 65 | 1.02e-12 | 60.8 |
| Msa0638410 | MtrunA17_Chr3g0119901 | 33.981 | 103 | 44 | 2 | 1 | 92 | 8 | 97 | 1.26e-12 | 60.8 |
| Msa0638410 | MtrunA17_Chr1g0208581 | 47.368 | 57 | 30 | 0 | 2 | 58 | 9 | 65 | 2.79e-12 | 60.1 |
| Msa0638410 | MtrunA17_Chr3g0085241 | 33.010 | 103 | 45 | 2 | 1 | 92 | 40 | 129 | 4.89e-12 | 59.7 |
| Msa0638410 | MtrunA17_Chr6g0449851 | 52.941 | 51 | 24 | 0 | 1 | 51 | 1 | 51 | 9.02e-12 | 59.3 |
| Msa0638410 | MtrunA17_Chr3g0111841 | 46.154 | 52 | 28 | 0 | 7 | 58 | 1 | 52 | 1.56e-11 | 55.1 |
| Msa0638410 | MtrunA17_Chr6g0457851 | 50.980 | 51 | 25 | 0 | 1 | 51 | 11 | 61 | 2.00e-11 | 58.5 |
| Msa0638410 | MtrunA17_Chr2g0300441 | 32.692 | 104 | 44 | 3 | 2 | 92 | 7 | 97 | 3.32e-11 | 57.4 |
| Msa0638410 | MtrunA17_Chr4g0071601 | 52.727 | 55 | 26 | 0 | 1 | 55 | 11 | 65 | 9.37e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638410 | AT2G14210.1 | 63.000 | 100 | 25 | 1 | 1 | 100 | 1 | 88 | 1.43e-37 | 126 |
| Msa0638410 | AT2G14210.2 | 63.000 | 100 | 25 | 1 | 1 | 100 | 1 | 88 | 1.80e-37 | 126 |
| Msa0638410 | AT4G37940.3 | 63.000 | 100 | 24 | 1 | 1 | 100 | 1 | 87 | 2.20e-36 | 121 |
| Msa0638410 | AT4G37940.4 | 63.000 | 100 | 24 | 1 | 1 | 100 | 1 | 87 | 9.61e-36 | 121 |
| Msa0638410 | AT4G37940.1 | 63.000 | 100 | 24 | 1 | 1 | 100 | 1 | 87 | 1.23e-35 | 121 |
| Msa0638410 | AT3G57230.2 | 57.000 | 100 | 30 | 1 | 1 | 100 | 1 | 87 | 7.14e-33 | 111 |
| Msa0638410 | AT2G22630.1 | 58.000 | 100 | 29 | 1 | 1 | 100 | 1 | 87 | 5.76e-32 | 112 |
| Msa0638410 | AT2G22630.2 | 58.000 | 100 | 29 | 1 | 1 | 100 | 1 | 87 | 5.76e-32 | 112 |
| Msa0638410 | AT3G57230.1 | 57.000 | 100 | 30 | 1 | 1 | 100 | 1 | 87 | 1.77e-31 | 110 |
| Msa0638410 | AT3G57230.4 | 57.000 | 100 | 30 | 1 | 1 | 100 | 1 | 87 | 1.77e-31 | 110 |
| Msa0638410 | AT5G62165.14 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 1.97e-26 | 94.4 |
| Msa0638410 | AT3G57390.3 | 74.576 | 59 | 15 | 0 | 1 | 59 | 1 | 59 | 2.08e-26 | 97.4 |
| Msa0638410 | AT5G62165.17 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 3.43e-26 | 95.1 |
| Msa0638410 | AT5G62165.12 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 3.43e-26 | 95.1 |
| Msa0638410 | AT5G62165.11 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 3.43e-26 | 95.1 |
| Msa0638410 | AT3G57390.1 | 74.576 | 59 | 15 | 0 | 1 | 59 | 1 | 59 | 4.13e-26 | 97.4 |
| Msa0638410 | AT5G62165.6 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 6.69e-26 | 94.4 |
| Msa0638410 | AT5G62165.9 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 6.69e-26 | 94.4 |
| Msa0638410 | AT5G62165.7 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 6.69e-26 | 94.4 |
| Msa0638410 | AT5G62165.8 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 6.69e-26 | 94.4 |
| Msa0638410 | AT5G62165.13 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 6.69e-26 | 94.4 |
| Msa0638410 | AT5G62165.3 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 1.34e-25 | 95.1 |
| Msa0638410 | AT5G62165.1 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 1.34e-25 | 95.1 |
| Msa0638410 | AT5G62165.2 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 1.34e-25 | 95.1 |
| Msa0638410 | AT5G62165.10 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 1.38e-25 | 94.7 |
| Msa0638410 | AT5G62165.4 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 1.38e-25 | 94.7 |
| Msa0638410 | AT3G58780.2 | 66.667 | 63 | 21 | 0 | 1 | 63 | 16 | 78 | 1.49e-25 | 95.9 |
| Msa0638410 | AT4G09960.2 | 54.545 | 88 | 27 | 1 | 1 | 88 | 1 | 75 | 1.90e-25 | 94.7 |
| Msa0638410 | AT4G09960.1 | 54.545 | 88 | 27 | 1 | 1 | 88 | 1 | 75 | 2.25e-25 | 95.1 |
| Msa0638410 | AT4G09960.6 | 54.545 | 88 | 27 | 1 | 1 | 88 | 2 | 76 | 2.42e-25 | 95.1 |
| Msa0638410 | AT5G51870.2 | 50.000 | 98 | 36 | 1 | 1 | 98 | 1 | 85 | 2.58e-25 | 93.2 |
| Msa0638410 | AT4G09960.5 | 54.545 | 88 | 27 | 1 | 1 | 88 | 11 | 85 | 3.37e-25 | 94.7 |
| Msa0638410 | AT2G22540.3 | 50.000 | 100 | 37 | 1 | 1 | 100 | 1 | 87 | 3.79e-25 | 94.7 |
| Msa0638410 | AT2G22540.1 | 50.000 | 100 | 37 | 1 | 1 | 100 | 1 | 87 | 3.79e-25 | 94.7 |
| Msa0638410 | AT5G51870.5 | 50.000 | 98 | 36 | 1 | 1 | 98 | 24 | 108 | 5.41e-25 | 93.2 |
| Msa0638410 | AT4G09960.3 | 54.545 | 88 | 27 | 1 | 1 | 88 | 27 | 101 | 5.98e-25 | 94.4 |
| Msa0638410 | AT5G51870.1 | 50.000 | 98 | 36 | 1 | 1 | 98 | 1 | 85 | 6.58e-25 | 93.2 |
| Msa0638410 | AT5G51870.4 | 50.000 | 98 | 36 | 1 | 1 | 98 | 1 | 85 | 9.39e-25 | 93.2 |
| Msa0638410 | AT5G51870.3 | 50.000 | 98 | 36 | 1 | 1 | 98 | 11 | 95 | 1.25e-24 | 93.2 |
| Msa0638410 | AT4G09960.4 | 54.545 | 88 | 27 | 1 | 1 | 88 | 96 | 170 | 1.34e-24 | 94.7 |
| Msa0638410 | AT5G13790.2 | 63.380 | 71 | 19 | 1 | 1 | 64 | 1 | 71 | 1.57e-24 | 93.6 |
| Msa0638410 | AT4G18960.1 | 53.409 | 88 | 28 | 1 | 2 | 89 | 18 | 92 | 1.57e-24 | 93.2 |
| Msa0638410 | AT5G13790.1 | 63.380 | 71 | 19 | 1 | 1 | 64 | 1 | 71 | 1.66e-24 | 93.6 |
| Msa0638410 | AT4G11880.2 | 49.515 | 103 | 37 | 3 | 1 | 100 | 1 | 91 | 2.33e-24 | 91.3 |
| Msa0638410 | AT4G11880.3 | 49.515 | 103 | 37 | 3 | 1 | 100 | 1 | 91 | 2.33e-24 | 91.3 |
| Msa0638410 | AT5G23260.3 | 53.191 | 94 | 29 | 3 | 1 | 90 | 1 | 83 | 2.92e-24 | 92.4 |
| Msa0638410 | AT2G42830.1 | 49.474 | 95 | 32 | 2 | 1 | 95 | 16 | 94 | 2.99e-24 | 92.4 |
| Msa0638410 | AT3G58780.1 | 49.474 | 95 | 32 | 2 | 1 | 95 | 16 | 94 | 3.28e-24 | 92.4 |
| Msa0638410 | AT2G42830.2 | 49.474 | 95 | 32 | 2 | 1 | 95 | 16 | 94 | 3.35e-24 | 92.4 |
| Msa0638410 | AT5G23260.2 | 53.191 | 94 | 29 | 3 | 1 | 90 | 1 | 83 | 3.46e-24 | 92.4 |
| Msa0638410 | AT4G24540.1 | 47.368 | 95 | 37 | 1 | 1 | 95 | 1 | 82 | 3.66e-24 | 91.7 |
| Msa0638410 | AT3G58780.5 | 49.474 | 95 | 32 | 2 | 1 | 95 | 22 | 100 | 3.86e-24 | 92.4 |
| Msa0638410 | AT2G45660.2 | 54.545 | 88 | 27 | 1 | 1 | 88 | 1 | 75 | 4.55e-24 | 89.7 |
| Msa0638410 | AT5G23260.4 | 53.191 | 94 | 29 | 3 | 1 | 90 | 17 | 99 | 4.84e-24 | 92.4 |
| Msa0638410 | AT5G23260.1 | 53.191 | 94 | 29 | 3 | 1 | 90 | 17 | 99 | 5.43e-24 | 92.0 |
| Msa0638410 | AT4G11880.4 | 54.545 | 88 | 28 | 2 | 1 | 88 | 1 | 76 | 6.45e-24 | 90.9 |
| Msa0638410 | AT4G11880.1 | 54.545 | 88 | 28 | 2 | 1 | 88 | 1 | 76 | 6.45e-24 | 90.9 |
| Msa0638410 | AT3G58780.4 | 49.474 | 95 | 32 | 2 | 1 | 95 | 16 | 94 | 7.98e-24 | 92.0 |
| Msa0638410 | AT2G45650.1 | 53.571 | 84 | 26 | 1 | 1 | 84 | 1 | 71 | 1.02e-23 | 91.3 |
| Msa0638410 | AT2G22540.2 | 49.000 | 100 | 33 | 1 | 1 | 100 | 1 | 82 | 1.21e-23 | 90.5 |
| Msa0638410 | AT2G45660.1 | 54.545 | 88 | 27 | 1 | 1 | 88 | 1 | 75 | 1.30e-23 | 90.1 |
| Msa0638410 | AT5G51860.2 | 65.625 | 64 | 22 | 0 | 1 | 64 | 1 | 64 | 2.14e-23 | 89.4 |
| Msa0638410 | AT5G51860.1 | 65.625 | 64 | 22 | 0 | 1 | 64 | 1 | 64 | 3.10e-23 | 89.0 |
| Msa0638410 | AT3G58780.3 | 45.794 | 107 | 43 | 2 | 1 | 95 | 16 | 119 | 4.54e-23 | 89.7 |
| Msa0638410 | AT4G22950.2 | 46.465 | 99 | 37 | 2 | 1 | 96 | 1 | 86 | 8.04e-23 | 87.0 |
| Msa0638410 | AT2G03710.3 | 47.368 | 95 | 36 | 3 | 1 | 95 | 1 | 81 | 1.01e-22 | 87.0 |
| Msa0638410 | AT1G26310.1 | 46.316 | 95 | 39 | 1 | 1 | 95 | 1 | 83 | 1.97e-22 | 87.8 |
| Msa0638410 | AT5G60910.1 | 48.810 | 84 | 31 | 1 | 1 | 84 | 1 | 72 | 2.27e-22 | 87.4 |
| Msa0638410 | AT4G22950.3 | 47.423 | 97 | 35 | 2 | 1 | 94 | 1 | 84 | 2.35e-22 | 87.0 |
| Msa0638410 | AT4G22950.1 | 47.423 | 97 | 35 | 2 | 1 | 94 | 1 | 84 | 2.35e-22 | 87.0 |
| Msa0638410 | AT3G54340.1 | 66.102 | 59 | 20 | 0 | 1 | 59 | 1 | 59 | 3.54e-22 | 86.7 |
| Msa0638410 | AT5G20240.2 | 50.588 | 85 | 31 | 2 | 1 | 85 | 1 | 74 | 4.30e-22 | 84.3 |
| Msa0638410 | AT2G03710.2 | 47.368 | 95 | 36 | 3 | 1 | 95 | 1 | 81 | 4.35e-22 | 87.0 |
| Msa0638410 | AT2G03710.1 | 47.368 | 95 | 36 | 3 | 1 | 95 | 1 | 81 | 4.57e-22 | 87.0 |
| Msa0638410 | AT1G24260.3 | 63.333 | 60 | 22 | 0 | 1 | 60 | 1 | 60 | 7.99e-22 | 85.9 |
| Msa0638410 | AT5G20240.1 | 50.588 | 85 | 31 | 2 | 1 | 85 | 1 | 74 | 8.51e-22 | 85.1 |
| Msa0638410 | AT1G24260.2 | 63.333 | 60 | 22 | 0 | 1 | 60 | 1 | 60 | 9.99e-22 | 85.9 |
| Msa0638410 | AT1G24260.1 | 63.333 | 60 | 22 | 0 | 1 | 60 | 1 | 60 | 1.00e-21 | 85.9 |
| Msa0638410 | AT5G15800.1 | 63.333 | 60 | 22 | 0 | 1 | 60 | 1 | 60 | 1.27e-21 | 85.5 |
| Msa0638410 | AT1G69120.2 | 43.158 | 95 | 42 | 1 | 1 | 95 | 1 | 83 | 1.40e-21 | 85.1 |
| Msa0638410 | AT5G15800.2 | 63.333 | 60 | 22 | 0 | 1 | 60 | 1 | 60 | 1.86e-21 | 85.5 |
| Msa0638410 | AT1G69120.1 | 43.158 | 95 | 42 | 1 | 1 | 95 | 1 | 83 | 2.42e-21 | 85.1 |
| Msa0638410 | AT3G02310.2 | 61.667 | 60 | 23 | 0 | 1 | 60 | 1 | 60 | 2.73e-21 | 83.6 |
| Msa0638410 | AT3G61120.1 | 62.712 | 59 | 22 | 0 | 1 | 59 | 1 | 59 | 3.00e-21 | 84.7 |
| Msa0638410 | AT3G30260.1 | 47.619 | 84 | 32 | 1 | 1 | 84 | 1 | 72 | 3.19e-21 | 84.7 |
| Msa0638410 | AT3G02310.1 | 61.667 | 60 | 23 | 0 | 1 | 60 | 1 | 60 | 7.24e-21 | 83.6 |
| Msa0638410 | AT5G10140.2 | 44.681 | 94 | 40 | 1 | 1 | 94 | 1 | 82 | 7.83e-21 | 81.6 |
| Msa0638410 | AT5G10140.4 | 44.681 | 94 | 40 | 1 | 1 | 94 | 1 | 82 | 9.21e-21 | 82.0 |
| Msa0638410 | AT5G65060.2 | 45.833 | 96 | 40 | 1 | 1 | 96 | 1 | 84 | 9.62e-21 | 82.0 |
| Msa0638410 | AT5G65060.1 | 46.465 | 99 | 37 | 2 | 1 | 99 | 1 | 83 | 1.04e-20 | 82.0 |
| Msa0638410 | AT5G65060.3 | 46.465 | 99 | 37 | 2 | 1 | 99 | 1 | 83 | 1.09e-20 | 82.0 |
| Msa0638410 | AT1G71692.1 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 1.17e-20 | 82.4 |
| Msa0638410 | AT5G10140.1 | 44.681 | 94 | 40 | 1 | 1 | 94 | 1 | 82 | 1.29e-20 | 82.0 |
| Msa0638410 | AT5G10140.3 | 44.681 | 94 | 40 | 1 | 1 | 94 | 1 | 82 | 1.46e-20 | 81.6 |
| Msa0638410 | AT5G65070.4 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 2.19e-20 | 80.1 |
| Msa0638410 | AT5G65070.1 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 3.37e-20 | 80.9 |
| Msa0638410 | AT5G65070.3 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 8.29e-20 | 80.5 |
| Msa0638410 | AT5G65070.2 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 8.42e-20 | 80.5 |
| Msa0638410 | AT5G65070.5 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 8.55e-20 | 80.1 |
| Msa0638410 | AT5G65050.2 | 43.750 | 96 | 42 | 1 | 1 | 96 | 1 | 84 | 1.35e-19 | 79.0 |
| Msa0638410 | AT5G65050.5 | 43.750 | 96 | 42 | 1 | 1 | 96 | 1 | 84 | 1.96e-19 | 78.6 |
| Msa0638410 | AT5G65050.1 | 43.750 | 96 | 42 | 1 | 1 | 96 | 1 | 84 | 2.07e-19 | 78.6 |
| Msa0638410 | AT5G65050.3 | 43.750 | 96 | 42 | 1 | 1 | 96 | 1 | 84 | 2.27e-19 | 78.6 |
| Msa0638410 | AT5G65080.3 | 61.017 | 59 | 23 | 0 | 1 | 59 | 8 | 66 | 1.00e-18 | 77.0 |
| Msa0638410 | AT5G65080.2 | 61.017 | 59 | 23 | 0 | 1 | 59 | 8 | 66 | 1.51e-18 | 76.6 |
| Msa0638410 | AT1G31140.1 | 53.731 | 67 | 31 | 0 | 1 | 67 | 1 | 67 | 3.21e-18 | 75.9 |
| Msa0638410 | AT1G31140.2 | 53.731 | 67 | 31 | 0 | 1 | 67 | 1 | 67 | 3.22e-18 | 76.3 |
| Msa0638410 | AT1G77980.1 | 64.815 | 54 | 19 | 0 | 1 | 54 | 1 | 54 | 5.80e-18 | 77.0 |
| Msa0638410 | AT1G22130.1 | 66.667 | 54 | 18 | 0 | 1 | 54 | 1 | 54 | 6.08e-17 | 74.3 |
| Msa0638410 | AT1G77080.12 | 49.425 | 87 | 38 | 2 | 1 | 82 | 1 | 86 | 3.42e-16 | 69.3 |
| Msa0638410 | AT1G77080.2 | 49.425 | 87 | 38 | 2 | 1 | 82 | 1 | 86 | 7.22e-16 | 69.3 |
| Msa0638410 | AT3G66656.1 | 46.774 | 62 | 33 | 0 | 1 | 62 | 1 | 62 | 9.24e-16 | 68.9 |
| Msa0638410 | AT1G77080.11 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 1.31e-15 | 68.6 |
| Msa0638410 | AT1G72350.1 | 56.897 | 58 | 25 | 0 | 2 | 59 | 43 | 100 | 1.39e-15 | 69.3 |
| Msa0638410 | AT1G77080.5 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 1.65e-15 | 68.2 |
| Msa0638410 | AT1G77080.4 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 2.46e-15 | 68.2 |
| Msa0638410 | AT2G34440.1 | 50.000 | 58 | 29 | 0 | 1 | 58 | 1 | 58 | 2.67e-15 | 67.4 |
| Msa0638410 | AT1G77950.3 | 57.407 | 54 | 23 | 0 | 1 | 54 | 1 | 54 | 2.81e-15 | 68.9 |
| Msa0638410 | AT1G77950.2 | 57.407 | 54 | 23 | 0 | 1 | 54 | 1 | 54 | 2.81e-15 | 68.9 |
| Msa0638410 | AT1G77950.1 | 57.407 | 54 | 23 | 0 | 1 | 54 | 1 | 54 | 2.81e-15 | 68.9 |
| Msa0638410 | AT1G77950.4 | 57.407 | 54 | 23 | 0 | 1 | 54 | 1 | 54 | 2.81e-15 | 68.9 |
| Msa0638410 | AT1G77080.8 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 5.25e-15 | 67.8 |
| Msa0638410 | AT1G69540.1 | 56.604 | 53 | 23 | 0 | 1 | 53 | 1 | 53 | 2.55e-14 | 67.0 |
| Msa0638410 | AT1G69540.2 | 56.604 | 53 | 23 | 0 | 1 | 53 | 1 | 53 | 3.01e-14 | 67.0 |
| Msa0638410 | AT1G18750.1 | 54.717 | 53 | 24 | 0 | 1 | 53 | 1 | 53 | 4.95e-14 | 66.2 |
| Msa0638410 | AT1G18750.3 | 54.717 | 53 | 24 | 0 | 1 | 53 | 1 | 53 | 5.10e-14 | 66.2 |
| Msa0638410 | AT1G18750.4 | 54.717 | 53 | 24 | 0 | 1 | 53 | 1 | 53 | 5.12e-14 | 66.2 |
| Msa0638410 | AT2G24840.1 | 50.000 | 58 | 29 | 0 | 1 | 58 | 62 | 119 | 2.42e-13 | 63.9 |
| Msa0638410 | AT4G37435.1 | 51.613 | 62 | 29 | 1 | 1 | 61 | 1 | 62 | 2.87e-13 | 62.4 |
| Msa0638410 | AT2G03060.3 | 54.717 | 53 | 24 | 0 | 1 | 53 | 1 | 53 | 3.41e-13 | 63.9 |
| Msa0638410 | AT2G03060.7 | 54.717 | 53 | 24 | 0 | 1 | 53 | 1 | 53 | 3.41e-13 | 63.9 |
| Msa0638410 | AT2G03060.1 | 54.717 | 53 | 24 | 0 | 1 | 53 | 1 | 53 | 3.41e-13 | 63.9 |
| Msa0638410 | AT1G01530.1 | 48.276 | 58 | 30 | 0 | 1 | 58 | 6 | 63 | 3.85e-13 | 63.2 |
| Msa0638410 | AT2G03060.2 | 54.717 | 53 | 24 | 0 | 1 | 53 | 1 | 53 | 4.44e-13 | 63.5 |
| Msa0638410 | AT2G26320.1 | 52.830 | 53 | 25 | 0 | 1 | 53 | 17 | 69 | 5.05e-13 | 60.1 |
| Msa0638410 | AT5G60440.1 | 36.842 | 95 | 44 | 2 | 2 | 93 | 7 | 88 | 1.83e-12 | 61.6 |
| Msa0638410 | AT3G04100.1 | 38.889 | 72 | 37 | 1 | 2 | 66 | 14 | 85 | 2.20e-11 | 57.8 |
| Msa0638410 | AT1G65360.1 | 43.103 | 58 | 33 | 0 | 1 | 58 | 6 | 63 | 2.41e-11 | 58.2 |
| Msa0638410 | AT1G47760.1 | 44.828 | 58 | 32 | 0 | 1 | 58 | 1 | 58 | 2.82e-11 | 57.4 |
| Msa0638410 | AT4G36590.1 | 49.123 | 57 | 29 | 0 | 2 | 58 | 7 | 63 | 4.63e-11 | 57.4 |
Find 16 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAATGAATCTCTTCCTTT+TGG | 0.294820 | 4_3:-33875020 | Msa0638410:CDS |
| TTTATGACTACGCAAGTTCC+AGG | 0.371320 | 4_3:-33875046 | Msa0638410:CDS |
| TCAAGCAATGGATCCTGCTT+TGG | 0.436950 | 4_3:-33872213 | Msa0638410:CDS |
| TCTTTGAAAACGTCACTTGA+CGG | 0.460305 | 4_3:+33875159 | None:intergenic |
| AACTTGTGCATCACAAAGAA+TGG | 0.480043 | 4_3:+33875100 | None:intergenic |
| ATTCTTTGTGATGCACAAGT+TGG | 0.486752 | 4_3:-33875098 | Msa0638410:CDS |
| GAGGAAAGATTGTGATTCGA+AGG | 0.502771 | 4_3:-33875199 | Msa0638410:CDS |
| CACAGTAAAACAAAGCCAAA+AGG | 0.509371 | 4_3:+33875005 | None:intergenic |
| CAGGATCCATTGCTTGATGA+TGG | 0.537832 | 4_3:+33872219 | None:intergenic |
| AAGAGATTCATTCTTATACC+TGG | 0.540048 | 4_3:+33875028 | None:intergenic |
| GGATCCTGCTTTGGAACTCA+AGG | 0.545696 | 4_3:-33872204 | None:intergenic |
| ATTACCTTGAGTTCCAAAGC+AGG | 0.557527 | 4_3:+33872200 | None:intergenic |
| GTCATAAAGCTTGTGAGTAG+AGG | 0.558703 | 4_3:+33875061 | None:intergenic |
| GTAGAATTAAAGATGGGGAG+AGG | 0.572124 | 4_3:-33875218 | None:intergenic |
| AGAGGACCATCATCAAGCAA+TGG | 0.621274 | 4_3:-33872225 | Msa0638410:CDS |
| GCGTTATAACAAGTTAGTAG+AGG | 0.643614 | 4_3:-33872243 | Msa0638410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGAAACTTTTTTTTTAA+GGG | + | chr4_3:33872877-33872896 | None:intergenic | 10.0% |
| !!! | ATATAGAAACTTTTTTTTTA+AGG | + | chr4_3:33872878-33872897 | None:intergenic | 10.0% |
| !! | TGAACAAAAAATAAAAATAA+AGG | - | chr4_3:33873634-33873653 | Msa0638410:intron | 10.0% |
| !!! | AAAATTAGTTCTTATTGATA+AGG | - | chr4_3:33872501-33872520 | Msa0638410:intron | 15.0% |
| !!! | AAATTAGTTCTTATTGATAA+GGG | - | chr4_3:33872502-33872521 | Msa0638410:intron | 15.0% |
| !!! | ATTTCAAGATTTTTTTTTGA+AGG | - | chr4_3:33872943-33872962 | Msa0638410:intron | 15.0% |
| !! | TGATTATGTATAACTTAAAT+AGG | + | chr4_3:33873281-33873300 | None:intergenic | 15.0% |
| !! | TTTAATACGTAAATATTTCA+TGG | + | chr4_3:33873311-33873330 | None:intergenic | 15.0% |
| !! | ATTCTTTCTATAATATAATG+AGG | + | chr4_3:33874012-33874031 | None:intergenic | 15.0% |
| !!! | AATAAGTTATGGATTTTTTT+AGG | + | chr4_3:33874396-33874415 | None:intergenic | 15.0% |
| !! | AAAAGTTACATAATAAGTTA+TGG | + | chr4_3:33874407-33874426 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTTGAATAGCA+AGG | - | chr4_3:33874524-33874543 | Msa0638410:intron | 15.0% |
| !! | ATGTTGATATTAGTATTAAT+GGG | + | chr4_3:33875121-33875140 | None:intergenic | 15.0% |
| !! | AATGTTGATATTAGTATTAA+TGG | + | chr4_3:33875122-33875141 | None:intergenic | 15.0% |
| !! | AACAAAATTCACAAAACAAA+TGG | - | chr4_3:33873031-33873050 | Msa0638410:intron | 20.0% |
| !! | ACAAAATTCACAAAACAAAT+GGG | - | chr4_3:33873032-33873051 | Msa0638410:intron | 20.0% |
| !!! | AAATATCTAGTTTAACAACA+AGG | + | chr4_3:33873457-33873476 | None:intergenic | 20.0% |
| !! | AGAATGAAGAAAAAAAAATG+GGG | + | chr4_3:33874104-33874123 | None:intergenic | 20.0% |
| !! | CAGAATGAAGAAAAAAAAAT+GGG | + | chr4_3:33874105-33874124 | None:intergenic | 20.0% |
| !! | ACAGAATGAAGAAAAAAAAA+TGG | + | chr4_3:33874106-33874125 | None:intergenic | 20.0% |
| !!! | CTAAATTATTAGTAGTGTTT+TGG | - | chr4_3:33874344-33874363 | Msa0638410:intron | 20.0% |
| !!! | TTATGTAACTTTTTGTTTTG+AGG | - | chr4_3:33874414-33874433 | Msa0638410:intron | 20.0% |
| !!! | ATATTATGCAACTTTTTAAG+AGG | - | chr4_3:33874439-33874458 | Msa0638410:intron | 20.0% |
| !! | ATAGCAAGGAAATTATATTA+AGG | - | chr4_3:33874538-33874557 | Msa0638410:intron | 20.0% |
| !! | GATGCAAAAAAAAATGTAAA+AGG | - | chr4_3:33874890-33874909 | Msa0638410:intron | 20.0% |
| ! | TCTAGTGTTTACTATACTTA+CGG | - | chr4_3:33872646-33872665 | Msa0638410:intron | 25.0% |
| !! | TTTAAAGTGAACAATTGTGA+TGG | - | chr4_3:33872830-33872849 | Msa0638410:intron | 25.0% |
| ! | ATGGAGAGAAAATAAAATGT+TGG | - | chr4_3:33872849-33872868 | Msa0638410:intron | 25.0% |
| ! | CAAAATTCACAAAACAAATG+GGG | - | chr4_3:33873033-33873052 | Msa0638410:intron | 25.0% |
| ! | CCTAACAATATTGATATTGT+CGG | - | chr4_3:33873177-33873196 | Msa0638410:intron | 25.0% |
| ! | TTAAACTAGATATTTAGCTG+AGG | - | chr4_3:33873462-33873481 | Msa0638410:intron | 25.0% |
| !!! | AACGTTAAGTATTGTGTTTT+TGG | - | chr4_3:33873587-33873606 | Msa0638410:intron | 25.0% |
| !!! | ACGTTAAGTATTGTGTTTTT+GGG | - | chr4_3:33873588-33873607 | Msa0638410:intron | 25.0% |
| ! | AATGAAGAAAAAAAAATGGG+GGG | + | chr4_3:33874102-33874121 | None:intergenic | 25.0% |
| ! | GAATGAAGAAAAAAAAATGG+GGG | + | chr4_3:33874103-33874122 | None:intergenic | 25.0% |
| ! | TCAAATGTGTATGTATTCTA+CGG | - | chr4_3:33874165-33874184 | Msa0638410:intron | 25.0% |
| !! | GCTAATTATTAGCAGTATTT+TGG | - | chr4_3:33874277-33874296 | Msa0638410:intron | 25.0% |
| !!! | TTTAGCTACACGATTTTTTT+AGG | + | chr4_3:33874329-33874348 | None:intergenic | 25.0% |
| ! | AAAATGTGATGAAGTACAAT+AGG | - | chr4_3:33874620-33874639 | Msa0638410:intron | 25.0% |
| !!! | TTTTTAAGCATCTTTTGAGA+GGG | + | chr4_3:33874653-33874672 | None:intergenic | 25.0% |
| !!! | TTTTTTAAGCATCTTTTGAG+AGG | + | chr4_3:33874654-33874673 | None:intergenic | 25.0% |
| !!! | GATTGTATTCTAGGATAAAT+TGG | + | chr4_3:33874693-33874712 | None:intergenic | 25.0% |
| ! | CTACAATTAGATTGTATTCT+AGG | + | chr4_3:33874702-33874721 | None:intergenic | 25.0% |
| ! | ATCTAATTGTTATGCACTTA+CGG | - | chr4_3:33874746-33874765 | Msa0638410:intron | 25.0% |
| ! | ATTTATATTGTGTGAATGCA+TGG | - | chr4_3:33875027-33875046 | Msa0638410:CDS | 25.0% |
| ! | ACGTTTTCAAAGAGAAGAAA+AGG | - | chr4_3:33872262-33872281 | Msa0638410:CDS | 30.0% |
| ! | CGTTTTCAAAGAGAAGAAAA+GGG | - | chr4_3:33872263-33872282 | Msa0638410:CDS | 30.0% |
| AAGAGATTCATTCTTATACC+TGG | + | chr4_3:33872386-33872405 | None:intergenic | 30.0% | |
| ! | AAGAATGAATCTCTTCCTTT+TGG | - | chr4_3:33872391-33872410 | Msa0638410:intron | 30.0% |
| ACTAATTAGCTAACCGTTTA+CGG | - | chr4_3:33872706-33872725 | Msa0638410:intron | 30.0% | |
| AAAAACCTTGAAGATTGTTG+CGG | + | chr4_3:33872749-33872768 | None:intergenic | 30.0% | |
| !!! | TCGATGAGTGTTTTTTTAGA+CGG | - | chr4_3:33873075-33873094 | Msa0638410:intron | 30.0% |
| CCGACAATATCAATATTGTT+AGG | + | chr4_3:33873180-33873199 | None:intergenic | 30.0% | |
| CACATAACCTAGTATTGTAA+AGG | + | chr4_3:33873367-33873386 | None:intergenic | 30.0% | |
| ! | ATGGTTGAAATTGAAGCATT+TGG | + | chr4_3:33873399-33873418 | None:intergenic | 30.0% |
| AGACTATATAGGATGCTATA+TGG | + | chr4_3:33873418-33873437 | None:intergenic | 30.0% | |
| ! | ATCTAGTTTAACAACAAGGT+CGG | + | chr4_3:33873453-33873472 | None:intergenic | 30.0% |
| ATTGTAATCGTTTGAGGAAA+GGG | + | chr4_3:33873515-33873534 | None:intergenic | 30.0% | |
| TCATGAACTCATAGCTATAA+GGG | + | chr4_3:33873554-33873573 | None:intergenic | 30.0% | |
| TTCATGAACTCATAGCTATA+AGG | + | chr4_3:33873555-33873574 | None:intergenic | 30.0% | |
| !! | CGTTAAGTATTGTGTTTTTG+GGG | - | chr4_3:33873589-33873608 | Msa0638410:intron | 30.0% |
| GTAAAGAGATAAAGTTGTGT+AGG | - | chr4_3:33873664-33873683 | Msa0638410:intron | 30.0% | |
| CTATTCTTTCAAATGACAAG+TGG | - | chr4_3:33873751-33873770 | Msa0638410:intron | 30.0% | |
| ! | GTAAATTTTCCCTAGTTGAA+GGG | - | chr4_3:33873818-33873837 | Msa0638410:intron | 30.0% |
| ! | TAAATTTTCCCTAGTTGAAG+GGG | - | chr4_3:33873819-33873838 | Msa0638410:intron | 30.0% |
| TATGTAATTCACTATCCGAA+AGG | + | chr4_3:33873953-33873972 | None:intergenic | 30.0% | |
| ! | ACATACACATTTGAGATCTA+TGG | + | chr4_3:33874159-33874178 | None:intergenic | 30.0% |
| CGAATTTGTATAGAGAATCA+CGG | + | chr4_3:33874199-33874218 | None:intergenic | 30.0% | |
| ACCAATTAACTTACATGCAT+GGG | - | chr4_3:33874229-33874248 | Msa0638410:intron | 30.0% | |
| ! | TGTACTTCATCACATTTTGT+GGG | + | chr4_3:33874618-33874637 | None:intergenic | 30.0% |
| ! | TTGTACTTCATCACATTTTG+TGG | + | chr4_3:33874619-33874638 | None:intergenic | 30.0% |
| !! | TTTTAAGCATCTTTTGAGAG+GGG | + | chr4_3:33874652-33874671 | None:intergenic | 30.0% |
| AGTGATTACTTTAACCCTTA+AGG | - | chr4_3:33874814-33874833 | Msa0638410:intron | 30.0% | |
| TCTGTTTCATTTGACCTTAA+GGG | + | chr4_3:33874831-33874850 | None:intergenic | 30.0% | |
| ATCTGTTTCATTTGACCTTA+AGG | + | chr4_3:33874832-33874851 | None:intergenic | 30.0% | |
| CAAATGAAACAGATGAGATT+TGG | - | chr4_3:33874838-33874857 | Msa0638410:intron | 30.0% | |
| GAATAAATTAACACTAGCAG+TGG | + | chr4_3:33875079-33875098 | None:intergenic | 30.0% | |
| ! | TCTTTGAAAACGTCACTTGA+CGG | + | chr4_3:33872255-33872274 | None:intergenic | 35.0% |
| AACTTGTGCATCACAAAGAA+TGG | + | chr4_3:33872314-33872333 | None:intergenic | 35.0% | |
| ATTCTTTGTGATGCACAAGT+TGG | - | chr4_3:33872313-33872332 | Msa0638410:intron | 35.0% | |
| CACAGTAAAACAAAGCCAAA+AGG | + | chr4_3:33872409-33872428 | None:intergenic | 35.0% | |
| TTGTACCACAATATATACGC+AGG | + | chr4_3:33872534-33872553 | None:intergenic | 35.0% | |
| ACACACACAATTCGAATTCT+CGG | - | chr4_3:33873128-33873147 | Msa0638410:intron | 35.0% | |
| ! | TTGATATTGTCGGTTGAGTT+AGG | - | chr4_3:33873187-33873206 | Msa0638410:intron | 35.0% |
| GTTAGGTCTTAGAGACAAAT+TGG | - | chr4_3:33873204-33873223 | Msa0638410:intron | 35.0% | |
| GATGGAGATCAAGACTAAAT+AGG | + | chr4_3:33873342-33873361 | None:intergenic | 35.0% | |
| CCTAGTATTGTAAAGGAAGA+TGG | + | chr4_3:33873360-33873379 | None:intergenic | 35.0% | |
| CCATCTTCCTTTACAATACT+AGG | - | chr4_3:33873357-33873376 | Msa0638410:intron | 35.0% | |
| GATGGAGATCAAGACTATAT+AGG | + | chr4_3:33873429-33873448 | None:intergenic | 35.0% | |
| CATTGTAATCGTTTGAGGAA+AGG | + | chr4_3:33873516-33873535 | None:intergenic | 35.0% | |
| TTCCTCAAACGATTACAATG+AGG | - | chr4_3:33873516-33873535 | Msa0638410:intron | 35.0% | |
| TTCCTCATTGTAATCGTTTG+AGG | + | chr4_3:33873521-33873540 | None:intergenic | 35.0% | |
| CATCTTGTGCAATTTCAGAA+AGG | + | chr4_3:33873714-33873733 | None:intergenic | 35.0% | |
| !! | TGCACAAGATGAGTATTGAT+AGG | - | chr4_3:33873723-33873742 | Msa0638410:intron | 35.0% |
| ! | CGTAAATTTTCCCTAGTTGA+AGG | - | chr4_3:33873817-33873836 | Msa0638410:intron | 35.0% |
| GACAAAGACTTACGTTACAA+GGG | + | chr4_3:33873923-33873942 | None:intergenic | 35.0% | |
| CGGATAGTGAATTACATATG+TGG | - | chr4_3:33873955-33873974 | Msa0638410:intron | 35.0% | |
| GACCAATTAACTTACATGCA+TGG | - | chr4_3:33874228-33874247 | Msa0638410:intron | 35.0% | |
| TCCCATGCATGTAAGTTAAT+TGG | + | chr4_3:33874233-33874252 | None:intergenic | 35.0% | |
| GCGTTATAACAAGTTAGTAG+AGG | - | chr4_3:33875168-33875187 | Msa0638410:CDS | 35.0% | |
| GAGGAAAGATTGTGATTCGA+AGG | - | chr4_3:33872212-33872231 | Msa0638410:CDS | 40.0% | |
| GTCATAAAGCTTGTGAGTAG+AGG | + | chr4_3:33872353-33872372 | None:intergenic | 40.0% | |
| TTTATGACTACGCAAGTTCC+AGG | - | chr4_3:33872365-33872384 | Msa0638410:intron | 40.0% | |
| GCTTACCTGCGTATATATTG+TGG | - | chr4_3:33872526-33872545 | Msa0638410:intron | 40.0% | |
| ! | AAACACTAGTCAGAAGTGCA+AGG | + | chr4_3:33872599-33872618 | None:intergenic | 40.0% |
| ACTCGTTAGGAAACCGTAAA+CGG | + | chr4_3:33872722-33872741 | None:intergenic | 40.0% | |
| TATCTCCGCAACAATCTTCA+AGG | - | chr4_3:33872741-33872760 | Msa0638410:intron | 40.0% | |
| !!! | GAGTGTTTTTTTAGACGGAG+TGG | - | chr4_3:33873080-33873099 | Msa0638410:intron | 40.0% |
| CACACACAATTCGAATTCTC+GGG | - | chr4_3:33873129-33873148 | Msa0638410:intron | 40.0% | |
| GGTCTTAGAGACAAATTGGT+CGG | - | chr4_3:33873208-33873227 | Msa0638410:intron | 40.0% | |
| TTTAACAACAAGGTCGGAGA+TGG | + | chr4_3:33873447-33873466 | None:intergenic | 40.0% | |
| GGACAAAGACTTACGTTACA+AGG | + | chr4_3:33873924-33873943 | None:intergenic | 40.0% | |
| TCTTTGTCCGTCATTCCTTT+CGG | - | chr4_3:33873935-33873954 | Msa0638410:intron | 40.0% | |
| TCACTATCCGAAAGGAATGA+CGG | + | chr4_3:33873945-33873964 | None:intergenic | 40.0% | |
| TACATATGTGGAGTACGAGT+CGG | - | chr4_3:33873967-33873986 | Msa0638410:intron | 40.0% | |
| AGAATCGTTTGACCCTTGTT+CGG | - | chr4_3:33874027-33874046 | Msa0638410:intron | 40.0% | |
| AGACAGACTTTGAACACGAG+CGG | + | chr4_3:33872629-33872648 | None:intergenic | 45.0% | |
| TTGTTGCGGAGATACTCGTT+AGG | + | chr4_3:33872735-33872754 | None:intergenic | 45.0% | |
| AACACTCATCGATCTAGCTG+AGG | + | chr4_3:33873067-33873086 | None:intergenic | 45.0% | |
| GAATTGTGTGTGTGTGTGTG+AGG | + | chr4_3:33873121-33873140 | None:intergenic | 45.0% | |
| CGAATTCTCGGGTTCAAACT+CGG | - | chr4_3:33873140-33873159 | Msa0638410:intron | 45.0% | |
| ! | CTTTGGTCTGCTATTTGCGT+GGG | - | chr4_3:33873789-33873808 | Msa0638410:intron | 45.0% |
| GAATCGTTTGACCCTTGTTC+GGG | - | chr4_3:33874028-33874047 | Msa0638410:intron | 45.0% | |
| ! | TGTAGAGCGCTAGCCTAATT+TGG | - | chr4_3:33874051-33874070 | Msa0638410:intron | 45.0% |
| ! | GCGCTAGCCTAATTTGGTAT+CGG | - | chr4_3:33874057-33874076 | Msa0638410:intron | 45.0% |
| !! | TAGCCTAATTTGGTATCGGC+TGG | - | chr4_3:33874061-33874080 | Msa0638410:intron | 45.0% |
| !! | AGCCTAATTTGGTATCGGCT+GGG | - | chr4_3:33874062-33874081 | Msa0638410:intron | 45.0% |
| !! | AATGGGGGGAAATTTGCTAG+AGG | + | chr4_3:33874088-33874107 | None:intergenic | 45.0% |
| AGAGGACCATCATCAAGCAA+TGG | - | chr4_3:33875186-33875205 | Msa0638410:CDS | 45.0% | |
| CAGGATCCATTGCTTGATGA+TGG | + | chr4_3:33875195-33875214 | None:intergenic | 45.0% | |
| TCAAGCAATGGATCCTGCTT+TGG | - | chr4_3:33875198-33875217 | Msa0638410:CDS | 45.0% | |
| !!! | ATAAATAGTTTATTTTATTA+TGG | + | chr4_3:33874976-33874995 | None:intergenic | 5.0% |
| TCGGGTTCAAACTCGGATGA+AGG | - | chr4_3:33873147-33873166 | Msa0638410:intron | 50.0% | |
| AGGAAAGGGTTCACACTTGC+GGG | + | chr4_3:33873501-33873520 | None:intergenic | 50.0% | |
| GAGGAAAGGGTTCACACTTG+CGG | + | chr4_3:33873502-33873521 | None:intergenic | 50.0% | |
| GACCAAAGGCTAAACGTCGT+AGG | + | chr4_3:33873777-33873796 | None:intergenic | 50.0% | |
| CCACGCAAATAGCAGACCAA+AGG | + | chr4_3:33873791-33873810 | None:intergenic | 50.0% | |
| ! | CCTTTGGTCTGCTATTTGCG+TGG | - | chr4_3:33873788-33873807 | Msa0638410:intron | 50.0% |
| TCCATGCACCCCTTCAACTA+GGG | + | chr4_3:33873830-33873849 | None:intergenic | 50.0% | |
| TTCCATGCACCCCTTCAACT+AGG | + | chr4_3:33873831-33873850 | None:intergenic | 50.0% | |
| CAACGGATCATGCGGCAAAA+TGG | + | chr4_3:33873877-33873896 | None:intergenic | 50.0% | |
| ! | CATTTTGCCGCATGATCCGT+TGG | - | chr4_3:33873875-33873894 | Msa0638410:intron | 50.0% |
| GACTCTACCAACGGATCATG+CGG | + | chr4_3:33873885-33873904 | None:intergenic | 50.0% | |
| CGCACTTTGGACTCTACCAA+CGG | + | chr4_3:33873894-33873913 | None:intergenic | 50.0% | |
| ACAAGGGAAGTTGCGCACTT+TGG | + | chr4_3:33873907-33873926 | None:intergenic | 50.0% | |
| ! | GGCCTACGACGTTTAGCCTT+TGG | - | chr4_3:33873772-33873791 | Msa0638410:intron | 55.0% |
| ! | TCCCTAGTTGAAGGGGTGCA+TGG | - | chr4_3:33873826-33873845 | Msa0638410:intron | 55.0% |
| AGCGCTCTACACCCGAACAA+GGG | + | chr4_3:33874042-33874061 | None:intergenic | 55.0% | |
| TAGCGCTCTACACCCGAACA+AGG | + | chr4_3:33874043-33874062 | None:intergenic | 55.0% | |
| GGCCCAGCCGATACCAAATT+AGG | + | chr4_3:33874067-33874086 | None:intergenic | 55.0% | |
| CATGGAACCCCGCGCTTAGC+TGG | - | chr4_3:33873844-33873863 | Msa0638410:intron | 65.0% | |
| AGCGCTACCAGCTAAGCGCG+GGG | + | chr4_3:33873854-33873873 | None:intergenic | 65.0% | |
| GAGCGCTACCAGCTAAGCGC+GGG | + | chr4_3:33873855-33873874 | None:intergenic | 65.0% | |
| ! | GGAGCGCTACCAGCTAAGCG+CGG | + | chr4_3:33873856-33873875 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 33872205 | 33875228 | 33872205 | ID=Msa0638410;Name=Msa0638410 |
| chr4_3 | mRNA | 33872205 | 33875228 | 33872205 | ID=Msa0638410-mRNA-1;Parent=Msa0638410;Name=Msa0638410-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|2|0|100 |
| chr4_3 | exon | 33875008 | 33875228 | 33875008 | ID=Msa0638410-mRNA-1:exon:7637;Parent=Msa0638410-mRNA-1 |
| chr4_3 | exon | 33872205 | 33872283 | 33872205 | ID=Msa0638410-mRNA-1:exon:7636;Parent=Msa0638410-mRNA-1 |
| chr4_3 | CDS | 33875008 | 33875228 | 33875008 | ID=Msa0638410-mRNA-1:cds;Parent=Msa0638410-mRNA-1 |
| chr4_3 | CDS | 33872205 | 33872283 | 33872205 | ID=Msa0638410-mRNA-1:cds;Parent=Msa0638410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
