AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0639830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639830 MtrunA17_Chr4g0023221 84.971 173 1 1 1 173 900 1047 3.09e-94 294
Msa0639830 MtrunA17_Chr2g0280711 44.944 178 68 4 1 173 700 852 3.10e-41 147
Msa0639830 MtrunA17_Chr2g0323231 48.252 143 47 2 1 141 348 465 1.37e-40 142
Msa0639830 MtrunA17_Chr4g0023111 48.148 162 56 3 1 159 884 1020 1.57e-40 145
Msa0639830 MtrunA17_Chr4g0048631 44.886 176 69 3 1 173 702 852 1.65e-40 145
Msa0639830 MtrunA17_Chr3g0092301 42.286 175 72 4 1 173 100 247 2.62e-40 136
Msa0639830 MtrunA17_Chr8g0354331 44.118 170 68 2 1 168 270 414 3.67e-40 140
Msa0639830 MtrunA17_Chr5g0394011 47.531 162 52 4 1 154 521 657 9.40e-40 142
Msa0639830 MtrunA17_Chr3g0081001 45.294 170 66 2 1 168 513 657 3.38e-39 140
Msa0639830 MtrunA17_Chr3g0081071 41.860 172 71 3 1 168 99 245 4.24e-39 133
Msa0639830 MtrunA17_Chr2g0280691 44.000 175 66 4 1 173 696 840 7.46e-39 140
Msa0639830 MtrunA17_Chr3g0081011 43.529 170 69 2 1 168 509 653 8.63e-39 139
Msa0639830 MtrunA17_Chr2g0280681 41.520 171 72 2 1 168 671 816 1.02e-38 140
Msa0639830 MtrunA17_Chr4g0042431 38.889 180 73 4 1 173 1 150 1.87e-38 129
Msa0639830 MtrunA17_Chr8g0361141 48.408 157 52 4 1 154 686 816 6.80e-38 137
Msa0639830 MtrunA17_Chr8g0361161 47.134 157 54 4 1 154 214 344 7.86e-38 133
Msa0639830 MtrunA17_Chr8g0354391 41.477 176 75 3 1 173 104 254 8.77e-38 130
Msa0639830 MtrunA17_Chr6g0453561 39.766 171 75 3 1 168 37 182 2.48e-37 127
Msa0639830 MtrunA17_Chr2g0280701 44.000 175 68 3 1 173 670 816 3.71e-37 135
Msa0639830 MtrunA17_Chr8g0354271 45.614 171 65 3 1 168 505 650 5.06e-37 134
Msa0639830 MtrunA17_Chr4g0042351 44.898 147 54 2 1 145 623 744 5.87e-37 134
Msa0639830 MtrunA17_Chr2g0280761 40.341 176 74 4 1 173 1 148 7.18e-37 124
Msa0639830 MtrunA17_Chr3g0093161 41.143 175 75 3 1 173 667 815 8.87e-37 134
Msa0639830 MtrunA17_Chr4g0048801 40.571 175 76 3 1 173 688 836 1.05e-36 134
Msa0639830 MtrunA17_Chr8g0354431 43.750 176 70 3 1 173 512 661 1.15e-36 133
Msa0639830 MtrunA17_Chr4g0055011 40.000 175 78 2 1 173 241 390 1.58e-36 130
Msa0639830 MtrunA17_Chr8g0360201 44.886 176 67 5 1 173 576 724 2.59e-36 132
Msa0639830 MtrunA17_Chr3g0082941 44.898 147 54 2 1 145 343 464 4.81e-36 130
Msa0639830 MtrunA17_Chr4g0042441 39.205 176 79 3 1 173 670 820 2.08e-35 130
Msa0639830 MtrunA17_Chr8g0354421 42.857 175 73 2 1 173 533 682 3.69e-35 129
Msa0639830 MtrunA17_Chr4g0042401 40.341 176 77 3 1 173 673 823 5.38e-35 129
Msa0639830 MtrunA17_Chr2g0280831 42.690 171 66 5 1 168 265 406 7.58e-35 125
Msa0639830 MtrunA17_Chr4g0042361 40.000 175 76 4 1 173 709 856 1.84e-34 127
Msa0639830 MtrunA17_Chr2g0280791 42.614 176 69 5 1 173 691 837 1.98e-34 127
Msa0639830 MtrunA17_Chr3g0098781 43.182 176 69 5 1 173 81 228 2.00e-34 120
Msa0639830 MtrunA17_Chr1g0206351 41.290 155 64 2 1 153 523 652 2.04e-34 127
Msa0639830 MtrunA17_Chr2g0280801 42.614 176 69 5 1 173 697 843 2.21e-34 127
Msa0639830 MtrunA17_Chr8g0354441 42.286 175 74 2 1 173 520 669 2.28e-34 127
Msa0639830 MtrunA17_Chr8g0361441 41.143 175 75 5 1 173 676 824 2.30e-34 127
Msa0639830 MtrunA17_Chr3g0081031 41.176 170 73 2 1 168 522 666 3.27e-34 126
Msa0639830 MtrunA17_Chr3g0081101 40.000 170 68 3 5 165 12 156 3.32e-34 118
Msa0639830 MtrunA17_Chr4g0042381 42.857 147 57 2 1 145 623 744 3.33e-34 127
Msa0639830 MtrunA17_Chr3g0084631 44.056 143 52 3 1 141 33 149 5.72e-34 118
Msa0639830 MtrunA17_Chr8g0361341 36.571 175 76 4 1 173 8 149 7.14e-34 117
Msa0639830 MtrunA17_Chr7g0236531 43.151 146 56 2 1 144 208 328 7.55e-34 122
Msa0639830 MtrunA17_Chr8g0361281 40.116 172 68 4 1 169 683 822 1.22e-33 125
Msa0639830 MtrunA17_Chr3g0084661 40.000 175 71 4 1 173 203 345 1.43e-33 121
Msa0639830 MtrunA17_Chr3g0078531 40.571 175 73 4 1 173 697 842 1.59e-33 125
Msa0639830 MtrunA17_Chr2g0318831 40.678 177 70 5 1 173 672 817 1.77e-33 125
Msa0639830 MtrunA17_Chr8g0340051 39.205 176 79 3 1 173 199 349 2.07e-33 121
Msa0639830 MtrunA17_Chr4g0042341 40.571 175 72 4 1 173 693 837 2.55e-33 124
Msa0639830 MtrunA17_Chr7g0236641 38.857 175 80 2 1 173 695 844 2.58e-33 124
Msa0639830 MtrunA17_Chr8g0354351 40.000 175 78 2 1 173 503 652 3.00e-33 124
Msa0639830 MtrunA17_Chr3g0078551 38.857 175 79 3 1 173 694 842 3.45e-33 124
Msa0639830 MtrunA17_Chr3g0078541 40.571 175 73 4 1 173 700 845 3.48e-33 124
Msa0639830 MtrunA17_Chr7g0236691 38.857 175 80 2 1 173 670 819 5.19e-33 123
Msa0639830 MtrunA17_Chr8g0354281 44.218 147 55 2 1 145 505 626 5.70e-33 123
Msa0639830 MtrunA17_Chr3g0084441 41.477 176 72 4 1 173 676 823 6.24e-33 123
Msa0639830 MtrunA17_Chr2g0318811 41.243 177 69 6 1 173 670 815 7.13e-33 123
Msa0639830 MtrunA17_Chr3g0084691 41.477 176 69 4 1 173 692 836 8.79e-33 122
Msa0639830 MtrunA17_Chr4g0042391 40.816 147 60 2 1 145 623 744 1.31e-32 122
Msa0639830 MtrunA17_Chr5g0394021 39.881 168 76 1 1 168 491 633 1.42e-32 122
Msa0639830 MtrunA17_Chr8g0361261 42.045 176 65 5 1 173 707 848 1.47e-32 122
Msa0639830 MtrunA17_Chr7g0236471 42.466 146 57 2 1 144 510 630 1.53e-32 122
Msa0639830 MtrunA17_Chr5g0422921 41.714 175 74 3 1 173 668 816 2.13e-32 122
Msa0639830 MtrunA17_Chr8g0361301 42.045 176 65 5 1 173 676 817 3.84e-32 121
Msa0639830 MtrunA17_Chr3g0078521 40.571 175 73 4 1 173 689 834 5.96e-32 120
Msa0639830 MtrunA17_Chr7g0236231 36.571 175 84 2 1 173 688 837 6.83e-32 120
Msa0639830 MtrunA17_Chr1g0206321 42.177 147 57 3 1 144 1 122 7.35e-32 112
Msa0639830 MtrunA17_Chr8g0357781 38.509 161 72 2 1 159 1 136 8.15e-32 112
Msa0639830 MtrunA17_Chr3g0084681 41.477 176 68 5 1 173 634 777 1.16e-31 119
Msa0639830 MtrunA17_Chr1g0206261 38.506 174 77 4 1 168 258 407 1.19e-31 117
Msa0639830 MtrunA17_Chr5g0428111 44.218 147 54 3 1 145 673 793 1.21e-31 119
Msa0639830 MtrunA17_Chr3g0084491 41.477 176 72 4 1 173 676 823 2.01e-31 119
Msa0639830 MtrunA17_Chr7g0236551 41.781 146 58 2 1 144 658 778 3.15e-31 118
Msa0639830 MtrunA17_Chr1g0154331 44.366 142 53 3 1 141 209 325 3.60e-31 115
Msa0639830 MtrunA17_Chr8g0357691 42.466 146 57 2 1 144 648 768 4.77e-31 117
Msa0639830 MtrunA17_Chr8g0361251 37.143 175 75 4 1 173 676 817 4.93e-31 117
Msa0639830 MtrunA17_Chr2g0280751 38.286 175 78 4 1 173 696 842 5.96e-31 117
Msa0639830 MtrunA17_Chr8g0340071 40.462 173 80 3 1 173 673 822 5.99e-31 117
Msa0639830 MtrunA17_Chr8g0357881 38.509 161 72 2 1 159 646 781 6.69e-31 117
Msa0639830 MtrunA17_Chr2g0318841 41.243 177 69 6 1 173 671 816 8.98e-31 117
Msa0639830 MtrunA17_Chr1g0206361 39.326 178 72 5 1 168 513 664 9.23e-31 117
Msa0639830 MtrunA17_Chr8g0340081 38.857 175 80 2 1 173 677 826 1.02e-30 117
Msa0639830 MtrunA17_Chr3g0084451 42.138 159 63 3 1 156 676 808 1.11e-30 117
Msa0639830 MtrunA17_Chr5g0428101 38.857 175 72 4 1 173 671 812 1.60e-30 116
Msa0639830 MtrunA17_Chr3g0084411 41.011 178 74 4 1 173 669 820 1.86e-30 116
Msa0639830 MtrunA17_Chr3g0084431 44.056 143 52 3 1 141 664 780 1.91e-30 116
Msa0639830 MtrunA17_Chr1g0154311 43.662 142 54 2 1 141 521 637 2.65e-30 115
Msa0639830 MtrunA17_Chr2g0280731 39.205 176 75 5 1 173 720 866 2.92e-30 115
Msa0639830 MtrunA17_Chr8g0340091 38.636 176 80 3 1 173 702 852 6.43e-30 114
Msa0639830 MtrunA17_Chr2g0280781 38.636 176 72 4 1 173 680 822 6.58e-30 114
Msa0639830 MtrunA17_Chr7g0236651 37.714 175 74 3 1 173 655 796 1.00e-29 114
Msa0639830 MtrunA17_Chr8g0358071 37.888 161 73 2 1 159 646 781 1.07e-29 114
Msa0639830 MtrunA17_Chr7g0236561 41.497 147 58 3 1 145 675 795 2.29e-29 113
Msa0639830 MtrunA17_Chr5g0428581 40.278 144 60 2 1 143 214 332 2.40e-29 110
Msa0639830 MtrunA17_Chr4g0048581 39.456 147 61 3 1 145 701 821 2.76e-29 112
Msa0639830 MtrunA17_Chr3g0084421 44.755 143 51 3 1 141 632 748 4.13e-29 112
Msa0639830 MtrunA17_Chr8g0357981 34.463 177 87 3 1 173 475 626 4.84e-29 112
Msa0639830 MtrunA17_Chr1g0154371 40.972 144 59 2 1 143 526 644 4.93e-29 112
Msa0639830 MtrunA17_Chr4g0020081 36.364 176 81 4 1 173 681 828 5.06e-29 112
Msa0639830 MtrunA17_Chr8g0340111 41.497 147 59 2 1 145 675 796 6.38e-29 112
Msa0639830 MtrunA17_Chr1g0206391 41.096 146 59 2 1 144 210 330 7.44e-29 109
Msa0639830 MtrunA17_Chr1g0206231 36.628 172 80 3 1 168 516 662 8.16e-29 111
Msa0639830 MtrunA17_Chr8g0357631 39.726 146 61 2 1 144 638 758 8.31e-29 111
Msa0639830 MtrunA17_Chr8g0357961 36.207 174 82 3 1 170 654 802 9.35e-29 111
Msa0639830 MtrunA17_Chr8g0357661 38.462 143 61 2 1 141 33 150 1.30e-28 104
Msa0639830 MtrunA17_Chr7g0236341 37.143 175 78 4 1 173 688 832 1.54e-28 110
Msa0639830 MtrunA17_Chr8g0357991 35.632 174 83 3 1 170 655 803 1.77e-28 110
Msa0639830 MtrunA17_Chr3g0119041 37.419 155 70 2 1 153 510 639 1.86e-28 110
Msa0639830 MtrunA17_Chr1g0206401 39.726 146 61 2 1 144 520 640 2.65e-28 110
Msa0639830 MtrunA17_Chr8g0357651 39.860 143 59 2 1 141 640 757 3.00e-28 110
Msa0639830 MtrunA17_Chr1g0206551 40.141 142 60 2 1 141 205 322 3.77e-28 107
Msa0639830 MtrunA17_Chr8g0358061 37.415 147 65 2 1 145 226 347 4.75e-28 107
Msa0639830 MtrunA17_Chr8g0358081 38.095 147 64 2 1 145 631 752 6.80e-28 108
Msa0639830 MtrunA17_Chr1g0205771 40.000 145 60 2 1 143 513 632 8.10e-28 108
Msa0639830 MtrunA17_Chr8g0358141 38.095 147 64 2 1 145 248 369 8.14e-28 107
Msa0639830 MtrunA17_Chr8g0358101 38.095 147 64 2 1 145 634 755 1.05e-27 108
Msa0639830 MtrunA17_Chr4g0048641 38.857 175 78 4 1 173 628 775 1.56e-27 107
Msa0639830 MtrunA17_Chr8g0357921 36.735 147 66 2 1 145 1 122 1.67e-27 100
Msa0639830 MtrunA17_Chr8g0361431 41.667 144 56 3 1 142 654 771 2.38e-27 107
Msa0639830 MtrunA17_Chr4g0048781 37.143 175 81 4 1 173 158 305 2.65e-27 104
Msa0639830 MtrunA17_Chr6g0484231 36.979 192 77 6 1 173 218 384 3.09e-27 105
Msa0639830 MtrunA17_Chr4g0048681 40.278 144 58 3 1 142 450 567 4.45e-27 106
Msa0639830 MtrunA17_Chr5g0426941 41.379 145 58 3 1 143 509 628 5.22e-27 106
Msa0639830 MtrunA17_Chr1g0206331 38.037 163 74 2 1 161 505 642 6.19e-27 106
Msa0639830 MtrunA17_Chr4g0048741 40.000 145 59 3 1 143 702 820 7.49e-27 105
Msa0639830 MtrunA17_Chr8g0357761 39.161 143 60 2 1 141 650 767 8.09e-27 105
Msa0639830 MtrunA17_Chr6g0475131 34.118 170 84 4 1 168 179 322 8.13e-27 103
Msa0639830 MtrunA17_Chr1g0154351 40.972 144 59 3 1 143 528 646 9.13e-27 105
Msa0639830 MtrunA17_Chr8g0358031 38.095 147 64 2 1 145 649 770 1.00e-26 105
Msa0639830 MtrunA17_Chr7g0236571 35.294 170 83 2 6 173 510 654 1.05e-26 105
Msa0639830 MtrunA17_Chr8g0358121 37.415 147 65 2 1 145 632 753 1.26e-26 105
Msa0639830 MtrunA17_Chr7g0236201 36.932 176 82 4 1 173 640 789 1.28e-26 105
Msa0639830 MtrunA17_Chr8g0357711 39.041 146 62 2 1 144 647 767 1.29e-26 105
Msa0639830 MtrunA17_Chr4g0048731 39.860 143 58 3 1 141 216 332 1.57e-26 102
Msa0639830 MtrunA17_Chr4g0048791 40.690 145 58 3 1 143 702 820 1.68e-26 105
Msa0639830 MtrunA17_Chr8g0347571 35.393 178 80 4 1 168 740 892 1.80e-26 104
Msa0639830 MtrunA17_Chr1g0206221 33.939 165 82 2 7 169 1 140 2.04e-26 97.8
Msa0639830 MtrunA17_Chr4g0048711 38.889 144 60 3 1 142 99 216 2.05e-26 102
Msa0639830 MtrunA17_Chr4g0048711 37.121 132 56 2 1 130 256 362 2.68e-21 89.0
Msa0639830 MtrunA17_Chr8g0357831 41.406 128 48 2 1 126 362 464 3.26e-26 103
Msa0639830 MtrunA17_Chr7g0236121 37.654 162 73 3 1 160 674 809 3.32e-26 103
Msa0639830 MtrunA17_Chr1g0154321 41.727 139 55 3 1 138 538 651 3.88e-26 103
Msa0639830 MtrunA17_Chr1g0206561 41.259 143 57 3 1 141 499 616 4.00e-26 103
Msa0639830 MtrunA17_Chr4g0048661 39.310 145 60 3 1 143 207 325 4.10e-26 102
Msa0639830 MtrunA17_Chr6g0475091 38.095 147 63 3 1 144 751 872 7.52e-26 103
Msa0639830 MtrunA17_Chr1g0206461 34.911 169 84 2 1 168 503 646 1.84e-25 102
Msa0639830 MtrunA17_Chr6g0474861 38.095 147 63 3 1 144 456 577 1.87e-25 102
Msa0639830 MtrunA17_Chr6g0475201 36.735 147 65 3 1 144 744 865 1.97e-25 102
Msa0639830 MtrunA17_Chr6g0474811 37.415 147 64 3 1 144 743 864 2.09e-25 101
Msa0639830 MtrunA17_Chr6g0474991 36.054 147 66 3 1 144 33 154 3.04e-25 96.3
Msa0639830 MtrunA17_Chr6g0474871 37.415 147 64 3 1 144 735 856 7.32e-25 100
Msa0639830 MtrunA17_Chr5g0394001 42.177 147 58 3 1 145 500 621 1.55e-24 99.4
Msa0639830 MtrunA17_Chr4g0065521 33.136 169 85 3 3 168 209 352 1.68e-24 97.4
Msa0639830 MtrunA17_Chr4g0065561 33.136 169 85 3 3 168 618 761 2.68e-24 98.6
Msa0639830 MtrunA17_Chr6g0474901 36.054 147 66 3 1 144 736 857 9.00e-24 97.1
Msa0639830 MtrunA17_Chr6g0475111 37.415 147 65 2 1 145 757 878 1.08e-23 97.1
Msa0639830 MtrunA17_Chr1g0206521 38.194 144 63 2 1 143 505 623 1.16e-23 97.1
Msa0639830 MtrunA17_Chr1g0206521 38.194 144 63 2 1 143 1147 1265 1.86e-23 96.3
Msa0639830 MtrunA17_Chr5g0393981 35.664 143 63 4 1 140 566 682 1.27e-23 96.7
Msa0639830 MtrunA17_Chr8g0357871 38.017 121 45 2 1 119 1 93 3.40e-23 89.0
Msa0639830 MtrunA17_Chr1g0206421 42.446 139 54 3 1 139 398 510 1.64e-22 93.2
Msa0639830 MtrunA17_Chr1g0206431 38.298 141 61 2 1 140 55 170 7.00e-22 87.8
Msa0639830 MtrunA17_Chr4g0065541 30.769 169 89 3 3 168 610 753 1.44e-21 90.9
Msa0639830 MtrunA17_Chr1g0206531 38.194 144 63 2 1 143 507 625 1.81e-21 90.5
Msa0639830 MtrunA17_Chr7g0236511 37.302 126 52 2 20 143 669 769 4.57e-21 89.4
Msa0639830 MtrunA17_Chr6g0475181 30.137 146 60 2 1 144 1 106 7.03e-21 83.2
Msa0639830 MtrunA17_Chr8g0376131 33.951 162 75 4 1 155 221 357 1.72e-20 87.0
Msa0639830 MtrunA17_Chr2g0281241 39.837 123 39 2 1 123 224 311 2.03e-20 85.9
Msa0639830 MtrunA17_Chr6g0474851 33.333 147 70 3 1 144 98 219 2.24e-20 85.1
Msa0639830 MtrunA17_Chr1g0206451 37.647 170 78 4 1 168 542 685 6.67e-20 85.9
Msa0639830 MtrunA17_Chr4g0071371 32.653 147 71 3 2 145 305 426 5.86e-19 83.2
Msa0639830 MtrunA17_Chr1g0160921 33.117 154 69 5 1 150 220 343 5.54e-18 80.1
Msa0639830 MtrunA17_Chr2g0314861 38.806 134 53 5 1 131 89 196 6.57e-18 78.6
Msa0639830 MtrunA17_Chr2g0312561 33.588 131 60 2 1 129 212 317 2.29e-17 78.2
Msa0639830 MtrunA17_Chr8g0358781 37.795 127 53 2 1 126 511 612 3.75e-17 78.2
Msa0639830 MtrunA17_Chr2g0314821 37.594 133 56 2 1 131 833 940 9.74e-17 77.0
Msa0639830 MtrunA17_Chr2g0314841 37.594 133 56 2 1 131 830 937 1.12e-16 76.6
Msa0639830 MtrunA17_Chr8g0358911 32.331 133 63 3 1 131 215 322 1.69e-16 75.9
Msa0639830 MtrunA17_Chr8g0358161 32.075 159 54 3 1 159 216 320 1.79e-16 75.5
Msa0639830 MtrunA17_Chr8g0358821 32.168 143 71 2 1 142 856 973 3.34e-16 75.5
Msa0639830 MtrunA17_Chr2g0314881 36.364 132 57 2 1 130 398 504 4.52e-16 74.7
Msa0639830 MtrunA17_Chr2g0299041 30.556 144 72 3 2 142 283 401 4.87e-16 74.7
Msa0639830 MtrunA17_Chr2g0315151 31.765 170 83 5 1 168 835 973 6.27e-16 74.7
Msa0639830 MtrunA17_Chr7g0226891 30.303 165 82 4 1 163 218 351 8.54e-16 73.9
Msa0639830 MtrunA17_Chr2g0314911 35.862 145 58 5 1 142 831 943 1.42e-15 73.6
Msa0639830 MtrunA17_Chr2g0312571 32.061 131 62 3 1 129 217 322 1.53e-15 73.2
Msa0639830 MtrunA17_Chr8g0359691 32.895 152 69 4 1 150 833 953 1.67e-15 73.6
Msa0639830 MtrunA17_Chr5g0433941 33.974 156 74 4 1 154 536 664 2.11e-15 73.2
Msa0639830 MtrunA17_Chr2g0314991 33.594 128 58 3 1 126 1346 1448 4.16e-15 72.4
Msa0639830 MtrunA17_Chr2g0314991 34.375 128 57 3 1 126 380 482 3.40e-14 69.7
Msa0639830 MtrunA17_Chr8g0354291 43.836 73 39 1 75 145 4 76 4.93e-15 67.4
Msa0639830 MtrunA17_Chr1g0175421 30.065 153 79 4 1 149 305 433 6.86e-15 71.2
Msa0639830 MtrunA17_Chr8g0359641 33.835 133 61 2 1 131 836 943 8.70e-15 71.2
Msa0639830 MtrunA17_Chr2g0314901 33.333 165 72 6 1 162 838 967 9.32e-15 71.2
Msa0639830 MtrunA17_Chr5g0443531 31.646 158 74 3 1 156 847 972 1.09e-14 70.9
Msa0639830 MtrunA17_Chr8g0359651 33.083 133 62 2 1 131 836 943 1.72e-14 70.5
Msa0639830 MtrunA17_Chr3g0109461 34.507 142 71 4 2 142 509 629 2.07e-14 70.1
Msa0639830 MtrunA17_Chr2g0315011 34.074 135 63 5 1 134 9 118 3.46e-14 67.0
Msa0639830 MtrunA17_Chr2g0314961 34.109 129 56 3 1 126 305 407 4.32e-14 68.9
Msa0639830 MtrunA17_Chr5g0438071 33.594 128 58 2 1 126 829 931 5.75e-14 68.9
Msa0639830 MtrunA17_Chr1g0175451 33.113 151 84 5 1 149 504 639 6.29e-14 68.9
Msa0639830 MtrunA17_Chr8g0379931 36.719 128 54 2 1 126 876 978 9.70e-14 68.2
Msa0639830 MtrunA17_Chr5g0428511 38.835 103 55 4 74 168 2 104 9.92e-14 63.9
Msa0639830 MtrunA17_Chr8g0351221 28.777 139 77 4 1 138 550 667 1.23e-13 67.8
Msa0639830 MtrunA17_Chr3g0109431 31.724 145 70 4 2 142 497 616 1.39e-13 67.8
Msa0639830 MtrunA17_Chr1g0181341 33.557 149 64 6 1 142 217 337 1.81e-13 67.0
Msa0639830 MtrunA17_Chr8g0357901 55.102 49 22 0 1 49 18 66 2.65e-13 62.8
Msa0639830 MtrunA17_Chr7g0236631 65.854 41 14 0 1 41 24 64 5.12e-13 61.6
Msa0639830 MtrunA17_Chr4g0058891 27.439 164 87 3 1 159 455 591 8.70e-13 65.5
Msa0639830 MtrunA17_Chr5g0428551 36.000 75 46 1 71 143 41 115 1.09e-12 62.4
Msa0639830 MtrunA17_Chr5g0418011 31.008 129 64 4 1 126 185 291 1.33e-12 64.3
Msa0639830 MtrunA17_Chr5g0428571 60.784 51 20 0 1 51 468 518 2.93e-12 63.9
Msa0639830 MtrunA17_Chr1g0175411 30.519 154 77 4 1 149 507 635 3.38e-12 63.9
Msa0639830 MtrunA17_Chr5g0428521 57.692 52 22 0 1 52 170 221 5.69e-12 62.0
Msa0639830 MtrunA17_Chr2g0306811 30.769 130 67 4 1 126 278 388 6.24e-12 62.8
Msa0639830 MtrunA17_Chr4g0073641 29.008 131 73 2 1 127 850 964 7.36e-12 62.8
Msa0639830 MtrunA17_Chr6g0474961 37.500 72 43 1 75 144 135 206 9.58e-12 61.2
Msa0639830 MtrunA17_Chr8g0385051 33.071 127 61 3 1 126 443 546 1.05e-11 62.4
Msa0639830 MtrunA17_Chr3g0114851 32.500 160 101 4 1 157 688 843 1.59e-11 62.0
Msa0639830 MtrunA17_Chr2g0324471 30.435 161 81 6 1 158 538 670 3.52e-11 60.8
Msa0639830 MtrunA17_Chr6g0467281 30.488 164 86 8 1 161 658 796 7.63e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639830 AT4G03230.7 61.017 177 40 4 1 173 702 853 4.92e-58 194
Msa0639830 AT4G03230.8 61.017 177 40 4 1 173 701 852 5.24e-58 194
Msa0639830 AT4G03230.3 61.017 177 40 4 1 173 694 845 5.31e-58 194
Msa0639830 AT4G03230.2 61.017 177 40 4 1 173 759 910 6.39e-58 194
Msa0639830 AT4G03230.6 61.017 177 40 4 1 173 759 910 6.39e-58 194
Msa0639830 AT4G03230.5 61.017 177 40 4 1 173 787 938 7.56e-58 194
Msa0639830 AT4G03230.4 61.017 177 40 4 1 173 859 1010 1.21e-57 194
Msa0639830 AT4G03230.1 61.017 177 40 4 1 173 859 1010 1.21e-57 194
Msa0639830 AT4G21380.1 42.541 181 71 3 1 173 695 850 9.85e-38 137
Msa0639830 AT1G65790.1 39.779 181 76 4 1 173 688 843 3.05e-37 136
Msa0639830 AT1G11330.1 40.571 175 77 2 1 173 691 840 8.15e-36 132
Msa0639830 AT1G11330.2 40.571 175 77 2 1 173 693 842 8.90e-36 132
Msa0639830 AT4G23180.1 42.466 146 57 2 1 144 517 637 9.94e-36 131
Msa0639830 AT4G27300.1 41.477 176 71 4 1 173 669 815 1.08e-35 131
Msa0639830 AT1G65800.1 43.421 152 53 3 1 145 692 817 3.88e-35 130
Msa0639830 AT1G11410.1 40.884 181 72 5 1 173 692 845 8.42e-35 129
Msa0639830 AT1G11410.3 40.884 181 72 5 1 173 668 821 8.58e-35 129
Msa0639830 AT1G11410.4 40.884 181 72 5 1 173 699 852 8.60e-35 129
Msa0639830 AT1G11410.2 40.884 181 72 5 1 173 577 730 9.62e-35 129
Msa0639830 AT4G23150.1 39.073 151 65 2 1 149 505 630 2.61e-33 124
Msa0639830 AT4G23140.2 40.411 146 60 2 1 144 526 646 2.69e-33 124
Msa0639830 AT4G23140.1 40.411 146 60 2 1 144 520 640 2.71e-33 124
Msa0639830 AT4G23160.1 38.509 161 72 2 1 159 528 663 3.09e-33 124
Msa0639830 AT4G23230.1 40.411 146 60 2 1 144 506 626 2.03e-32 122
Msa0639830 AT4G21390.1 40.449 178 75 4 1 173 698 849 2.93e-32 122
Msa0639830 AT1G11350.1 37.714 175 82 2 1 173 681 830 3.58e-32 121
Msa0639830 AT4G00960.2 37.356 174 76 3 1 171 133 276 2.33e-31 114
Msa0639830 AT4G00960.3 37.356 174 76 3 1 171 140 283 2.39e-31 114
Msa0639830 AT1G11340.1 37.288 177 80 4 1 173 684 833 8.29e-31 117
Msa0639830 AT4G00960.1 37.356 174 76 3 1 171 227 370 1.02e-30 115
Msa0639830 AT4G05200.2 37.500 152 68 2 1 150 534 660 1.16e-30 117
Msa0639830 AT4G23250.3 38.994 159 71 3 1 157 523 657 1.26e-30 117
Msa0639830 AT4G05200.1 37.500 152 68 2 1 150 516 642 1.29e-30 117
Msa0639830 AT4G23250.1 38.994 159 71 3 1 157 528 662 1.40e-30 117
Msa0639830 AT4G23260.2 40.449 178 75 6 1 173 497 648 1.75e-30 116
Msa0639830 AT4G23260.1 41.011 178 74 6 1 173 508 659 1.80e-30 116
Msa0639830 AT4G23250.2 38.994 159 71 3 1 157 523 657 1.88e-30 116
Msa0639830 AT4G11530.1 38.621 145 63 3 1 143 521 641 5.03e-30 115
Msa0639830 AT4G21410.1 40.462 173 72 5 1 168 403 549 6.11e-30 114
Msa0639830 AT4G21400.8 40.116 172 74 4 1 168 421 567 6.94e-30 114
Msa0639830 AT4G21400.1 40.116 172 74 4 1 168 532 678 9.17e-30 114
Msa0639830 AT4G21400.2 40.116 172 74 4 1 168 520 666 9.40e-30 114
Msa0639830 AT4G21400.7 40.116 172 74 4 1 168 522 668 1.07e-29 114
Msa0639830 AT4G21410.3 40.462 173 72 5 1 168 528 674 1.18e-29 114
Msa0639830 AT4G00970.1 36.932 176 83 2 1 173 515 665 2.42e-29 113
Msa0639830 AT4G23190.3 37.671 146 67 2 1 144 441 564 3.42e-29 112
Msa0639830 AT4G23190.4 37.671 146 67 2 1 144 441 564 3.42e-29 112
Msa0639830 AT4G23190.1 37.671 146 67 2 1 144 519 642 4.10e-29 112
Msa0639830 AT4G23200.1 33.714 175 84 4 1 168 505 654 5.23e-29 112
Msa0639830 AT4G11480.4 36.986 146 66 3 1 144 490 611 1.83e-28 110
Msa0639830 AT4G11480.3 36.986 146 66 3 1 144 493 614 1.98e-28 110
Msa0639830 AT4G11480.1 36.986 146 66 3 1 144 498 619 2.22e-28 110
Msa0639830 AT4G23130.1 39.041 146 63 3 1 144 509 630 3.83e-28 110
Msa0639830 AT4G27290.2 37.500 176 81 3 1 173 680 829 3.86e-28 110
Msa0639830 AT4G23130.2 39.041 146 63 3 1 144 513 634 4.08e-28 109
Msa0639830 AT4G27290.1 37.500 176 81 3 1 173 634 783 4.51e-28 109
Msa0639830 AT4G11490.1 39.860 143 60 4 1 141 490 608 4.53e-28 109
Msa0639830 AT1G61610.1 38.462 143 60 3 1 141 694 810 6.85e-28 109
Msa0639830 AT4G11900.1 39.161 143 59 3 1 141 706 822 7.70e-28 109
Msa0639830 AT4G11900.9 39.161 143 59 3 1 141 637 753 8.04e-28 108
Msa0639830 AT4G11470.1 33.708 178 84 4 1 168 508 661 1.43e-27 108
Msa0639830 AT4G11470.2 33.333 183 88 4 1 173 513 671 1.52e-27 108
Msa0639830 AT4G11460.1 36.184 152 69 3 1 149 518 644 1.81e-27 108
Msa0639830 AT4G11460.3 36.184 152 69 3 1 149 515 641 1.90e-27 108
Msa0639830 AT4G11460.2 36.184 152 69 3 1 149 440 566 1.95e-27 107
Msa0639830 AT4G23310.2 38.356 146 64 3 1 144 637 758 3.09e-27 107
Msa0639830 AT4G23310.1 38.356 146 64 3 1 144 677 798 3.56e-27 107
Msa0639830 AT4G23290.2 36.986 146 66 3 1 144 532 653 4.52e-27 107
Msa0639830 AT4G23290.1 36.986 146 66 3 1 144 489 610 4.63e-27 107
Msa0639830 AT4G23240.2 36.054 147 66 3 1 144 197 318 4.74e-27 104
Msa0639830 AT4G23280.3 35.955 178 75 5 1 168 463 611 6.27e-27 106
Msa0639830 AT4G23300.1 37.500 152 67 4 1 150 522 647 6.98e-27 106
Msa0639830 AT4G23280.1 35.955 178 75 5 1 168 513 661 8.76e-27 106
Msa0639830 AT4G23320.2 38.095 147 63 3 1 144 352 473 1.00e-26 105
Msa0639830 AT4G23320.1 38.095 147 63 3 1 144 352 473 1.00e-26 105
Msa0639830 AT4G23280.2 35.955 178 75 5 1 168 511 659 1.01e-26 105
Msa0639830 AT4G23320.3 38.095 147 63 3 1 144 373 494 1.04e-26 105
Msa0639830 AT3G45860.1 39.726 146 63 4 1 144 520 642 1.11e-26 105
Msa0639830 AT4G21230.1 40.541 148 58 3 1 144 502 623 1.51e-26 105
Msa0639830 AT4G38830.1 37.241 145 62 2 1 141 514 633 1.63e-26 105
Msa0639830 AT1G61430.1 37.143 175 79 4 1 173 661 806 2.54e-26 104
Msa0639830 AT1G61430.9 37.143 175 79 4 1 173 658 803 2.69e-26 104
Msa0639830 AT1G61430.11 37.143 175 79 4 1 173 635 780 2.70e-26 104
Msa0639830 AT1G61430.12 37.143 175 79 4 1 173 635 780 2.70e-26 104
Msa0639830 AT1G61430.13 37.143 175 79 4 1 173 635 780 2.70e-26 104
Msa0639830 AT4G23240.1 36.054 147 66 3 1 144 504 625 3.49e-26 104
Msa0639830 AT1G61490.3 36.000 175 81 4 1 173 509 654 4.87e-26 103
Msa0639830 AT1G61490.6 36.000 175 81 4 1 173 633 778 5.31e-26 103
Msa0639830 AT1G61490.7 36.000 175 81 4 1 173 633 778 5.31e-26 103
Msa0639830 AT1G61490.4 36.000 175 81 4 1 173 659 804 5.83e-26 103
Msa0639830 AT1G61490.1 36.000 175 81 4 1 173 659 804 5.83e-26 103
Msa0639830 AT1G61490.2 36.000 175 81 4 1 173 659 804 5.83e-26 103
Msa0639830 AT1G61490.5 36.000 175 81 4 1 173 659 804 5.83e-26 103
Msa0639830 AT4G23270.2 38.356 146 64 3 1 144 495 616 6.46e-26 103
Msa0639830 AT4G23270.1 38.356 146 64 3 1 144 495 616 6.46e-26 103
Msa0639830 AT1G61400.1 36.571 175 80 4 1 173 669 814 6.55e-26 103
Msa0639830 AT1G61400.2 36.571 175 80 4 1 173 677 822 7.16e-26 103
Msa0639830 AT4G23270.3 38.356 146 64 3 1 144 495 616 7.49e-26 103
Msa0639830 AT1G11300.1 36.932 176 75 5 1 173 678 820 1.12e-25 103
Msa0639830 AT1G11300.2 36.932 176 75 5 1 173 663 805 1.15e-25 102
Msa0639830 AT1G70740.2 37.500 152 75 4 1 150 218 351 1.70e-25 101
Msa0639830 AT4G23210.3 38.994 159 67 4 1 156 527 658 1.98e-25 102
Msa0639830 AT4G04540.1 37.654 162 71 4 1 161 522 654 8.08e-25 100
Msa0639830 AT4G04540.4 37.654 162 71 4 1 161 493 625 8.32e-25 100
Msa0639830 AT4G21366.1 39.695 131 46 2 1 123 1 106 8.62e-25 93.2
Msa0639830 AT1G61420.5 34.286 175 83 4 1 173 515 659 1.36e-24 99.8
Msa0639830 AT1G61420.3 34.286 175 83 4 1 173 513 657 1.43e-24 99.8
Msa0639830 AT4G23220.1 35.664 143 66 3 1 141 505 623 1.53e-24 99.8
Msa0639830 AT1G61420.2 34.286 175 83 4 1 173 665 809 1.98e-24 99.4
Msa0639830 AT1G61420.4 34.286 175 83 4 1 173 665 809 1.98e-24 99.4
Msa0639830 AT1G61420.1 34.286 175 83 4 1 173 663 807 2.09e-24 99.4
Msa0639830 AT1G61380.1 34.857 175 86 3 1 173 657 805 3.59e-24 98.6
Msa0639830 AT3G16030.1 37.222 180 81 5 1 173 696 850 3.84e-24 98.6
Msa0639830 AT1G61380.2 34.857 175 86 3 1 173 510 658 4.21e-24 98.6
Msa0639830 AT1G67520.5 40.411 146 57 4 1 141 428 548 5.19e-24 98.2
Msa0639830 AT3G16030.2 37.222 180 81 5 1 173 573 727 5.44e-24 98.2
Msa0639830 AT3G16030.6 37.222 180 81 5 1 173 717 871 6.12e-24 98.2
Msa0639830 AT1G67520.8 40.411 146 57 4 1 141 457 577 6.19e-24 97.8
Msa0639830 AT1G67520.7 40.411 146 57 4 1 141 457 577 6.19e-24 97.8
Msa0639830 AT1G67520.3 40.411 146 57 4 1 141 665 785 7.21e-24 97.8
Msa0639830 AT1G67520.6 40.411 146 57 4 1 141 672 792 8.26e-24 97.8
Msa0639830 AT1G67520.4 40.411 146 57 4 1 141 622 742 9.01e-24 97.4
Msa0639830 AT1G61500.2 35.227 176 80 6 1 173 642 786 9.12e-24 97.4
Msa0639830 AT1G61500.1 35.227 176 80 6 1 173 660 804 9.98e-24 97.4
Msa0639830 AT1G61500.3 35.227 176 80 6 1 173 665 809 1.03e-23 97.4
Msa0639830 AT1G70740.1 34.211 152 68 3 1 150 230 351 2.52e-23 95.5
Msa0639830 AT1G11303.1 34.857 175 80 3 1 173 678 820 2.86e-23 96.3
Msa0639830 AT1G61370.2 34.286 175 83 4 1 173 519 663 3.24e-23 95.9
Msa0639830 AT1G61370.1 34.286 175 83 4 1 173 670 814 4.25e-23 95.5
Msa0639830 AT4G04570.1 37.037 162 72 4 1 161 517 649 6.41e-23 95.1
Msa0639830 AT1G61440.3 36.986 146 64 3 1 144 652 771 8.00e-23 94.7
Msa0639830 AT1G61390.2 34.286 175 81 5 1 173 521 663 8.18e-23 94.7
Msa0639830 AT1G61440.1 36.986 146 64 3 1 144 647 766 8.47e-23 94.7
Msa0639830 AT1G61390.1 34.286 175 81 5 1 173 689 831 8.54e-23 94.7
Msa0639830 AT1G61440.2 36.986 146 64 3 1 144 677 796 8.77e-23 94.7
Msa0639830 AT1G11280.3 35.135 148 66 3 1 144 662 783 1.20e-22 94.4
Msa0639830 AT1G11280.2 35.135 148 66 3 1 144 674 795 1.22e-22 94.4
Msa0639830 AT1G11280.4 35.135 148 66 3 1 144 672 793 1.28e-22 94.4
Msa0639830 AT1G11280.1 35.135 148 66 3 1 144 684 805 1.42e-22 94.0
Msa0639830 AT1G61550.1 35.429 175 81 5 1 173 658 802 1.67e-22 94.0
Msa0639830 AT4G04510.2 34.503 171 74 5 1 168 510 645 3.67e-22 92.8
Msa0639830 AT4G04510.1 34.503 171 74 5 1 168 508 643 3.70e-22 92.8
Msa0639830 AT1G61480.1 33.143 175 85 4 1 173 665 809 4.01e-22 92.8
Msa0639830 AT1G61360.1 35.374 147 65 3 1 143 667 787 2.98e-18 81.6
Msa0639830 AT1G61360.2 35.374 147 65 3 1 143 586 706 3.38e-18 81.6
Msa0639830 AT1G61360.3 35.374 147 65 3 1 143 586 706 3.38e-18 81.6
Msa0639830 AT1G61360.4 35.374 147 65 3 1 143 586 706 3.38e-18 81.6
Msa0639830 AT4G28670.1 32.639 144 70 2 1 142 503 621 4.93e-17 78.2
Msa0639830 AT1G56130.3 32.867 143 70 2 1 142 662 779 9.80e-17 77.4
Msa0639830 AT1G56130.1 32.867 143 70 2 1 142 713 830 1.09e-16 77.0
Msa0639830 AT1G07650.4 32.867 143 69 2 1 141 635 752 1.13e-16 77.0
Msa0639830 AT1G56130.2 32.867 143 70 2 1 142 861 978 1.43e-16 77.0
Msa0639830 AT1G07650.3 32.867 143 69 2 1 141 822 939 1.47e-16 76.6
Msa0639830 AT1G07650.2 32.867 143 69 2 1 141 854 971 1.61e-16 76.6
Msa0639830 AT1G07650.1 32.867 143 69 2 1 141 848 965 1.63e-16 76.6
Msa0639830 AT1G56145.3 32.877 146 72 2 1 145 751 871 1.78e-16 76.6
Msa0639830 AT1G56145.1 32.877 146 72 2 1 145 854 974 1.84e-16 76.6
Msa0639830 AT1G56145.2 32.877 146 72 2 1 145 881 1001 2.08e-16 76.3
Msa0639830 AT1G70520.1 33.793 145 79 3 1 145 493 620 3.89e-16 75.5
Msa0639830 AT4G04500.1 31.544 149 74 3 1 144 514 639 5.71e-16 75.1
Msa0639830 AT1G56120.3 30.769 143 73 2 1 142 711 828 6.25e-16 75.1
Msa0639830 AT1G56120.1 30.769 143 73 2 1 142 877 994 7.60e-16 74.7
Msa0639830 AT1G56120.2 30.769 143 73 2 1 142 859 976 8.04e-16 74.7
Msa0639830 AT1G53440.1 29.609 179 81 5 1 164 836 984 1.15e-15 74.3
Msa0639830 AT1G53430.2 29.775 178 80 5 1 163 797 944 2.24e-15 73.6
Msa0639830 AT1G53430.1 29.775 178 80 5 1 163 838 985 2.31e-15 73.6
Msa0639830 AT1G56140.1 30.769 143 73 2 1 142 860 977 2.45e-15 73.2
Msa0639830 AT3G14840.2 33.333 132 61 2 1 130 841 947 3.59e-15 72.8
Msa0639830 AT4G23180.2 62.745 51 19 0 1 51 517 567 4.80e-15 72.4
Msa0639830 AT4G23190.2 59.649 57 20 1 1 54 519 575 1.53e-14 70.9
Msa0639830 AT4G21390.2 68.627 51 15 1 1 51 698 747 1.99e-14 70.5
Msa0639830 AT1G11330.3 61.538 52 20 0 1 52 693 744 3.89e-14 69.7
Msa0639830 AT4G23130.3 58.929 56 22 1 1 55 513 568 5.36e-14 69.3
Msa0639830 AT1G61460.1 28.947 152 76 4 24 173 628 749 2.94e-13 67.4
Msa0639830 AT1G29720.1 30.769 143 72 2 1 141 840 957 2.99e-13 67.4
Msa0639830 AT1G29740.2 34.375 128 58 3 1 126 844 947 4.09e-13 67.0
Msa0639830 AT1G29740.1 34.375 128 58 3 1 126 844 947 5.04e-13 66.6
Msa0639830 AT1G53420.1 33.846 130 55 6 1 126 793 895 1.01e-12 65.9
Msa0639830 AT5G06740.1 28.402 169 97 5 1 166 500 647 1.15e-12 65.5
Msa0639830 AT5G06740.2 28.402 169 97 5 1 166 512 659 1.20e-12 65.5
Msa0639830 AT5G03140.1 31.469 143 66 3 1 136 540 657 1.38e-12 65.5
Msa0639830 AT4G25390.1 33.813 139 68 4 2 138 520 636 1.45e-12 65.1
Msa0639830 AT1G29730.1 32.576 132 63 3 1 130 808 915 1.45e-12 65.5
Msa0639830 AT1G29730.2 32.576 132 63 3 1 130 840 947 1.62e-12 65.1
Msa0639830 AT1G11340.3 58.000 50 19 1 1 50 752 799 2.04e-12 64.7
Msa0639830 AT1G61610.2 56.604 53 22 1 1 53 694 745 2.47e-12 64.7
Msa0639830 AT3G53380.1 32.374 139 73 4 1 137 543 662 4.82e-12 63.5
Msa0639830 AT4G00970.2 62.000 50 19 0 1 50 515 564 5.06e-12 63.5
Msa0639830 AT1G29750.2 30.921 152 75 5 1 150 850 973 1.28e-11 62.4
Msa0639830 AT1G29750.1 30.921 152 75 5 1 150 835 958 1.38e-11 62.4
Msa0639830 AT5G35370.1 29.375 160 104 3 1 158 682 834 3.21e-11 61.2
Msa0639830 AT1G31420.1 31.655 139 68 3 1 138 473 585 3.99e-11 60.8
Msa0639830 AT1G31420.3 31.655 139 68 3 1 138 473 585 3.99e-11 60.8
Msa0639830 AT1G31420.2 31.655 139 68 3 1 138 472 584 4.03e-11 60.8
Msa0639830 AT3G24790.2 29.688 128 62 3 2 126 237 339 6.58e-11 60.1
Msa0639830 AT3G24790.1 29.688 128 62 3 2 126 219 321 7.09e-11 60.1

Find 28 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATGAATTGAGTCTTCT+TGG 0.246542 4_3:-36735551 Msa0639830:CDS
TTGACCGTCACTTTGGAAAA+TGG 0.256749 4_3:-36734919 Msa0639830:CDS
GACATTGTGGGACGTTCATT+TGG 0.274275 4_3:+36735075 None:intergenic
TCTCCAGAGTACGCCCTTGA+TGG 0.361451 4_3:-36735665 Msa0639830:CDS
CTGCATTGCATGTTAGTGTT+TGG 0.387244 4_3:+36735148 None:intergenic
ACATTGTGGGACGTTCATTT+GGG 0.398527 4_3:+36735076 None:intergenic
ATAACAAAGGCTGGTTCCTT+AGG 0.405438 4_3:+36735006 None:intergenic
GATGTAGATGCTCTGCTTGA+AGG 0.434721 4_3:+36734973 None:intergenic
TAATGAATTGACCGTCACTT+TGG 0.450686 4_3:-36734926 Msa0639830:CDS
ATGTTCAACTTGATAAAATC+CGG 0.463085 4_3:+36735568 None:intergenic
GGCATTTGTGGAAAGTAAGC+AGG 0.465899 4_3:-36735188 Msa0639830:CDS
GTGGTACTTGAGATTATTAG+TGG 0.466361 4_3:-36735602 Msa0639830:CDS
AATACCACATTTGACATTGT+GGG 0.490891 4_3:+36735063 None:intergenic
AAGGCTGGTTCCTTAGGAGT+TGG 0.498559 4_3:+36735012 None:intergenic
ATGTAGATGCTCTGCTTGAA+GGG 0.499766 4_3:+36734974 None:intergenic
TGTCCATCAAGGGCGTACTC+TGG 0.508621 4_3:+36735662 None:intergenic
AAATACCACATTTGACATTG+TGG 0.513189 4_3:+36735062 None:intergenic
CATCTTCTAATAACAAAGGC+TGG 0.526628 4_3:+36734997 None:intergenic
TCAAATGTGGTATTTATGCT+AGG 0.534354 4_3:-36735054 Msa0639830:CDS
TGCTTAAAATGTGTGAATGT+GGG 0.536527 4_3:-36735120 Msa0639830:CDS
TAATACTCTTCCAACTCCTA+AGG 0.552665 4_3:-36735022 Msa0639830:CDS
ATGCTTAAAATGTGTGAATG+TGG 0.580692 4_3:-36735121 Msa0639830:CDS
CCGTCACTTTGGAAAATGGT+AGG 0.585734 4_3:-36734915 Msa0639830:CDS
GTGGAAAGTAAGCAGGGCAA+TGG 0.595139 4_3:-36735181 Msa0639830:CDS
GCTTAAAATGTGTGAATGTG+GGG 0.621905 4_3:-36735119 Msa0639830:CDS
GCATTTGTGGAAAGTAAGCA+GGG 0.627615 4_3:-36735187 Msa0639830:CDS
AGGGCATCTTCTAATAACAA+AGG 0.639606 4_3:+36734993 None:intergenic
ACGTCCCACAATGTCAAATG+TGG 0.675854 4_3:-36735067 Msa0639830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTCTCTTTTTTTTGT+AGG - chr4_3:36735366-36735385 Msa0639830:intron 20.0%
!!! ATTGATTCTCTTTTTTTTGT+AGG - chr4_3:36735366-36735385 Msa0639830:intron 20.0%
! ATGTTCAACTTGATAAAATC+CGG + chr4_3:36735015-36735034 None:intergenic 25.0%
! ATGTTCAACTTGATAAAATC+CGG + chr4_3:36735015-36735034 None:intergenic 25.0%
ATTAGTGGAAAAAGAAACAC+CGG - chr4_3:36734993-36735012 Msa0639830:CDS 30.0%
!! GGGGATACTTATTTTCAAAA+TGG + chr4_3:36735165-36735184 None:intergenic 30.0%
!!! TTCTCTTTTTTTTGTAGGCA+TGG - chr4_3:36735371-36735390 Msa0639830:intron 30.0%
ATGCTTAAAATGTGTGAATG+TGG - chr4_3:36735459-36735478 Msa0639830:intron 30.0%
TGCTTAAAATGTGTGAATGT+GGG - chr4_3:36735460-36735479 Msa0639830:intron 30.0%
AATACCACATTTGACATTGT+GGG + chr4_3:36735520-36735539 None:intergenic 30.0%
AAATACCACATTTGACATTG+TGG + chr4_3:36735521-36735540 None:intergenic 30.0%
TCAAATGTGGTATTTATGCT+AGG - chr4_3:36735526-36735545 Msa0639830:CDS 30.0%
ATTAGTGGAAAAAGAAACAC+CGG - chr4_3:36734993-36735012 Msa0639830:CDS 30.0%
!! GGGGATACTTATTTTCAAAA+TGG + chr4_3:36735165-36735184 None:intergenic 30.0%
!!! TTCTCTTTTTTTTGTAGGCA+TGG - chr4_3:36735371-36735390 Msa0639830:intron 30.0%
ATGCTTAAAATGTGTGAATG+TGG - chr4_3:36735459-36735478 Msa0639830:intron 30.0%
TGCTTAAAATGTGTGAATGT+GGG - chr4_3:36735460-36735479 Msa0639830:intron 30.0%
AATACCACATTTGACATTGT+GGG + chr4_3:36735520-36735539 None:intergenic 30.0%
AAATACCACATTTGACATTG+TGG + chr4_3:36735521-36735540 None:intergenic 30.0%
TCAAATGTGGTATTTATGCT+AGG - chr4_3:36735526-36735545 Msa0639830:CDS 30.0%
CACTGAAAAATGTCCATCAA+GGG + chr4_3:36734931-36734950 None:intergenic 35.0%
TCACTGAAAAATGTCCATCA+AGG + chr4_3:36734932-36734951 None:intergenic 35.0%
!!! AAGTCCGATGTTTTTAGCTT+CGG - chr4_3:36734951-36734970 Msa0639830:CDS 35.0%
AACACCGAAGCTAAAAACAT+CGG + chr4_3:36734958-36734977 None:intergenic 35.0%
GTGGTACTTGAGATTATTAG+TGG - chr4_3:36734978-36734997 Msa0639830:CDS 35.0%
GAACATGAATTGAGTCTTCT+TGG - chr4_3:36735029-36735048 Msa0639830:CDS 35.0%
AATTGATCGCTCTGTAACTA+TGG - chr4_3:36735118-36735137 Msa0639830:CDS 35.0%
!!! TGGGGTTCATTTTTTATGTG+GGG + chr4_3:36735184-36735203 None:intergenic 35.0%
!!! GTGGGGTTCATTTTTTATGT+GGG + chr4_3:36735185-36735204 None:intergenic 35.0%
!!! TGTGGGGTTCATTTTTTATG+TGG + chr4_3:36735186-36735205 None:intergenic 35.0%
TATGTCCACTAACTAATGTG+GGG + chr4_3:36735202-36735221 None:intergenic 35.0%
GTATGTCCACTAACTAATGT+GGG + chr4_3:36735203-36735222 None:intergenic 35.0%
AGTATGTCCACTAACTAATG+TGG + chr4_3:36735204-36735223 None:intergenic 35.0%
GCTTAAAATGTGTGAATGTG+GGG - chr4_3:36735461-36735480 Msa0639830:intron 35.0%
TAATACTCTTCCAACTCCTA+AGG - chr4_3:36735558-36735577 Msa0639830:CDS 35.0%
CATCTTCTAATAACAAAGGC+TGG + chr4_3:36735586-36735605 None:intergenic 35.0%
! AGGGCATCTTCTAATAACAA+AGG + chr4_3:36735590-36735609 None:intergenic 35.0%
TAATGAATTGACCGTCACTT+TGG - chr4_3:36735654-36735673 Msa0639830:CDS 35.0%
CACTGAAAAATGTCCATCAA+GGG + chr4_3:36734931-36734950 None:intergenic 35.0%
TCACTGAAAAATGTCCATCA+AGG + chr4_3:36734932-36734951 None:intergenic 35.0%
!!! AAGTCCGATGTTTTTAGCTT+CGG - chr4_3:36734951-36734970 Msa0639830:CDS 35.0%
AACACCGAAGCTAAAAACAT+CGG + chr4_3:36734958-36734977 None:intergenic 35.0%
GTGGTACTTGAGATTATTAG+TGG - chr4_3:36734978-36734997 Msa0639830:CDS 35.0%
GAACATGAATTGAGTCTTCT+TGG - chr4_3:36735029-36735048 Msa0639830:CDS 35.0%
AATTGATCGCTCTGTAACTA+TGG - chr4_3:36735118-36735137 Msa0639830:CDS 35.0%
!!! TGGGGTTCATTTTTTATGTG+GGG + chr4_3:36735184-36735203 None:intergenic 35.0%
!!! GTGGGGTTCATTTTTTATGT+GGG + chr4_3:36735185-36735204 None:intergenic 35.0%
!!! TGTGGGGTTCATTTTTTATG+TGG + chr4_3:36735186-36735205 None:intergenic 35.0%
TATGTCCACTAACTAATGTG+GGG + chr4_3:36735202-36735221 None:intergenic 35.0%
GTATGTCCACTAACTAATGT+GGG + chr4_3:36735203-36735222 None:intergenic 35.0%
AGTATGTCCACTAACTAATG+TGG + chr4_3:36735204-36735223 None:intergenic 35.0%
GCTTAAAATGTGTGAATGTG+GGG - chr4_3:36735461-36735480 Msa0639830:intron 35.0%
TAATACTCTTCCAACTCCTA+AGG - chr4_3:36735558-36735577 Msa0639830:CDS 35.0%
CATCTTCTAATAACAAAGGC+TGG + chr4_3:36735586-36735605 None:intergenic 35.0%
! AGGGCATCTTCTAATAACAA+AGG + chr4_3:36735590-36735609 None:intergenic 35.0%
TAATGAATTGACCGTCACTT+TGG - chr4_3:36735654-36735673 Msa0639830:CDS 35.0%
!!! TGTTTTTAGCTTCGGTGTTG+TGG - chr4_3:36734959-36734978 Msa0639830:CDS 40.0%
ATGAACCCCACATTAGTTAG+TGG - chr4_3:36735194-36735213 Msa0639830:CDS 40.0%
! TTTTGTAGGCATGGCATTTG+TGG - chr4_3:36735380-36735399 Msa0639830:intron 40.0%
GCATTTGTGGAAAGTAAGCA+GGG - chr4_3:36735393-36735412 Msa0639830:intron 40.0%
CTGCATTGCATGTTAGTGTT+TGG + chr4_3:36735435-36735454 None:intergenic 40.0%
ACATTGTGGGACGTTCATTT+GGG + chr4_3:36735507-36735526 None:intergenic 40.0%
! ATAACAAAGGCTGGTTCCTT+AGG + chr4_3:36735577-36735596 None:intergenic 40.0%
ATGTAGATGCTCTGCTTGAA+GGG + chr4_3:36735609-36735628 None:intergenic 40.0%
! TTGACCGTCACTTTGGAAAA+TGG - chr4_3:36735661-36735680 Msa0639830:CDS 40.0%
! CCTACCATTTTCCAAAGTGA+CGG + chr4_3:36735668-36735687 None:intergenic 40.0%
!!! TGTTTTTAGCTTCGGTGTTG+TGG - chr4_3:36734959-36734978 Msa0639830:CDS 40.0%
ATGAACCCCACATTAGTTAG+TGG - chr4_3:36735194-36735213 Msa0639830:CDS 40.0%
! TTTTGTAGGCATGGCATTTG+TGG - chr4_3:36735380-36735399 Msa0639830:intron 40.0%
GCATTTGTGGAAAGTAAGCA+GGG - chr4_3:36735393-36735412 Msa0639830:intron 40.0%
CTGCATTGCATGTTAGTGTT+TGG + chr4_3:36735435-36735454 None:intergenic 40.0%
ACATTGTGGGACGTTCATTT+GGG + chr4_3:36735507-36735526 None:intergenic 40.0%
! ATAACAAAGGCTGGTTCCTT+AGG + chr4_3:36735577-36735596 None:intergenic 40.0%
ATGTAGATGCTCTGCTTGAA+GGG + chr4_3:36735609-36735628 None:intergenic 40.0%
! TTGACCGTCACTTTGGAAAA+TGG - chr4_3:36735661-36735680 Msa0639830:CDS 40.0%
! CCTACCATTTTCCAAAGTGA+CGG + chr4_3:36735668-36735687 None:intergenic 40.0%
GGCATTTGTGGAAAGTAAGC+AGG - chr4_3:36735392-36735411 Msa0639830:intron 45.0%
GACATTGTGGGACGTTCATT+TGG + chr4_3:36735508-36735527 None:intergenic 45.0%
ACGTCCCACAATGTCAAATG+TGG - chr4_3:36735513-36735532 Msa0639830:CDS 45.0%
GATGTAGATGCTCTGCTTGA+AGG + chr4_3:36735610-36735629 None:intergenic 45.0%
! CCGTCACTTTGGAAAATGGT+AGG - chr4_3:36735665-36735684 Msa0639830:CDS 45.0%
GGCATTTGTGGAAAGTAAGC+AGG - chr4_3:36735392-36735411 Msa0639830:intron 45.0%
GACATTGTGGGACGTTCATT+TGG + chr4_3:36735508-36735527 None:intergenic 45.0%
ACGTCCCACAATGTCAAATG+TGG - chr4_3:36735513-36735532 Msa0639830:CDS 45.0%
GATGTAGATGCTCTGCTTGA+AGG + chr4_3:36735610-36735629 None:intergenic 45.0%
! CCGTCACTTTGGAAAATGGT+AGG - chr4_3:36735665-36735684 Msa0639830:CDS 45.0%
! AGTGTCGTGTTGACACGTGT+CGG + chr4_3:36735289-36735308 None:intergenic 50.0%
GTGGAAAGTAAGCAGGGCAA+TGG - chr4_3:36735399-36735418 Msa0639830:intron 50.0%
! AAGGCTGGTTCCTTAGGAGT+TGG + chr4_3:36735571-36735590 None:intergenic 50.0%
! AGTGTCGTGTTGACACGTGT+CGG + chr4_3:36735289-36735308 None:intergenic 50.0%
GTGGAAAGTAAGCAGGGCAA+TGG - chr4_3:36735399-36735418 Msa0639830:intron 50.0%
! AAGGCTGGTTCCTTAGGAGT+TGG + chr4_3:36735571-36735590 None:intergenic 50.0%
TCTCCAGAGTACGCCCTTGA+TGG - chr4_3:36734915-36734934 Msa0639830:CDS 55.0%
! TGTCCATCAAGGGCGTACTC+TGG + chr4_3:36734921-36734940 None:intergenic 55.0%
TCTCCAGAGTACGCCCTTGA+TGG - chr4_3:36734915-36734934 Msa0639830:CDS 55.0%
! TGTCCATCAAGGGCGTACTC+TGG + chr4_3:36734921-36734940 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 36734912 36735690 36734912 ID=Msa0639830;Name=Msa0639830
chr4_3 mRNA 36734912 36735690 36734912 ID=Msa0639830-mRNA-1;Parent=Msa0639830;Name=Msa0639830-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|173
chr4_3 exon 36735472 36735690 36735472 ID=Msa0639830-mRNA-1:exon:8496;Parent=Msa0639830-mRNA-1
chr4_3 exon 36734912 36735214 36734912 ID=Msa0639830-mRNA-1:exon:8495;Parent=Msa0639830-mRNA-1
chr4_3 CDS 36735472 36735690 36735472 ID=Msa0639830-mRNA-1:cds;Parent=Msa0639830-mRNA-1
chr4_3 CDS 36734912 36735214 36734912 ID=Msa0639830-mRNA-1:cds;Parent=Msa0639830-mRNA-1
Gene Sequence

>Msa0639830

ATGTCTCCAGAGTACGCCCTTGATGGACATTTTTCAGTGAAGTCCGATGTTTTTAGCTTCGGTGTTGTGGTACTTGAGATTATTAGTGGAAAAAGAAACACCGGATTTTATCAAGTTGAACATGAATTGAGTCTTCTTGGATATGTAAGTATCTCGAGTTCTTATAATATGTCTAGCACATACTACGAGAAATGTTCAATCACTGTAATTGATCGCTCTGCATGGCATTTGTGGAAAGTAAGCAGGGCAATGGACTTCATAGACCAAACACTAACATGCAATGCAGAAGAATGCTTAAAATGTGTGAATGTGGGGCTATTATGCTTACAAGAAGACCCAAATGAACGTCCCACAATGTCAAATGTGGTATTTATGCTAGGAAGTGAATCTAATACTCTTCCAACTCCTAAGGAACCAGCCTTTGTTATTAGAAGATGCCCTTCAAGCAGAGCATCTACATCTAGTAAAATTGAAACTTTTTCACGTAATGAATTGACCGTCACTTTGGAAAATGGTAGGTAG
Protein sequence

>Msa0639830

MSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQVEHELSLLGYVSISSSYNMSSTYYEKCSITVIDRSAWHLWKVSRAMDFIDQTLTCNAEECLKCVNVGLLCLQEDPNERPTMSNVVFMLGSESNTLPTPKEPAFVIRRCPSSRASTSSKIETFSRNELTVTLENGR*