AlfalfaGEDB | Msa0639830

M. sativa cultivar zhongmu-4 / Msa0639830

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639830	MCH86397.1	78.857	175	10	2	1	173	34	183	1.08e-91	275

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639830	sp\|Q9ZR08\|Y4230_ARATH	61.017	177	40	4	1	173	701	852	5.16e-57	194

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639830	A0A392MFW4	78.857	175	10	2	1	173	34	183	5.16e-92	275

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639830	MtrunA17_Chr4g0023221	84.971	173	1	1	1	173	900	1047	3.09e-94	294
Msa0639830	MtrunA17_Chr2g0280711	44.944	178	68	4	1	173	700	852	3.10e-41	147
Msa0639830	MtrunA17_Chr2g0323231	48.252	143	47	2	1	141	348	465	1.37e-40	142
Msa0639830	MtrunA17_Chr4g0023111	48.148	162	56	3	1	159	884	1020	1.57e-40	145
Msa0639830	MtrunA17_Chr4g0048631	44.886	176	69	3	1	173	702	852	1.65e-40	145
Msa0639830	MtrunA17_Chr3g0092301	42.286	175	72	4	1	173	100	247	2.62e-40	136
Msa0639830	MtrunA17_Chr8g0354331	44.118	170	68	2	1	168	270	414	3.67e-40	140
Msa0639830	MtrunA17_Chr5g0394011	47.531	162	52	4	1	154	521	657	9.40e-40	142
Msa0639830	MtrunA17_Chr3g0081001	45.294	170	66	2	1	168	513	657	3.38e-39	140
Msa0639830	MtrunA17_Chr3g0081071	41.860	172	71	3	1	168	99	245	4.24e-39	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639830	AT4G03230.7	61.017	177	40	4	1	173	702	853	4.92e-58	194
Msa0639830	AT4G03230.8	61.017	177	40	4	1	173	701	852	5.24e-58	194
Msa0639830	AT4G03230.3	61.017	177	40	4	1	173	694	845	5.31e-58	194
Msa0639830	AT4G03230.2	61.017	177	40	4	1	173	759	910	6.39e-58	194
Msa0639830	AT4G03230.6	61.017	177	40	4	1	173	759	910	6.39e-58	194
Msa0639830	AT4G03230.5	61.017	177	40	4	1	173	787	938	7.56e-58	194
Msa0639830	AT4G03230.4	61.017	177	40	4	1	173	859	1010	1.21e-57	194
Msa0639830	AT4G03230.1	61.017	177	40	4	1	173	859	1010	1.21e-57	194
Msa0639830	AT4G21380.1	42.541	181	71	3	1	173	695	850	9.85e-38	137
Msa0639830	AT1G65790.1	39.779	181	76	4	1	173	688	843	3.05e-37	136

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Find 28 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACCACATTTGACATTG+TGG	0.513189	4_3:+36735062	None:intergenic
AAGGCTGGTTCCTTAGGAGT+TGG	0.498559	4_3:+36735012	None:intergenic
AATACCACATTTGACATTGT+GGG	0.490891	4_3:+36735063	None:intergenic
ACATTGTGGGACGTTCATTT+GGG	0.398527	4_3:+36735076	None:intergenic
ACGTCCCACAATGTCAAATG+TGG	0.675854	4_3:-36735067	Msa0639830:CDS
AGGGCATCTTCTAATAACAA+AGG	0.639606	4_3:+36734993	None:intergenic
ATAACAAAGGCTGGTTCCTT+AGG	0.405438	4_3:+36735006	None:intergenic
ATGCTTAAAATGTGTGAATG+TGG	0.580692	4_3:-36735121	Msa0639830:CDS
ATGTAGATGCTCTGCTTGAA+GGG	0.499766	4_3:+36734974	None:intergenic
ATGTTCAACTTGATAAAATC+CGG	0.463085	4_3:+36735568	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAGTGGAAAAAGAAACAC+CGG	-	chr4_3:36734993-36735012	Msa0639830:CDS	30.0%
ATGCTTAAAATGTGTGAATG+TGG	-	chr4_3:36735459-36735478	Msa0639830:intron	30.0%
TGCTTAAAATGTGTGAATGT+GGG	-	chr4_3:36735460-36735479	Msa0639830:intron	30.0%
AATACCACATTTGACATTGT+GGG	+	chr4_3:36735520-36735539	None:intergenic	30.0%
AAATACCACATTTGACATTG+TGG	+	chr4_3:36735521-36735540	None:intergenic	30.0%
TCAAATGTGGTATTTATGCT+AGG	-	chr4_3:36735526-36735545	Msa0639830:CDS	30.0%
ATTAGTGGAAAAAGAAACAC+CGG	-	chr4_3:36734993-36735012	Msa0639830:CDS	30.0%
ATGCTTAAAATGTGTGAATG+TGG	-	chr4_3:36735459-36735478	Msa0639830:intron	30.0%
TGCTTAAAATGTGTGAATGT+GGG	-	chr4_3:36735460-36735479	Msa0639830:intron	30.0%
AATACCACATTTGACATTGT+GGG	+	chr4_3:36735520-36735539	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	36734912	36735690	36734912	ID=Msa0639830;Name=Msa0639830
chr4_3	mRNA	36734912	36735690	36734912	ID=Msa0639830-mRNA-1;Parent=Msa0639830;Name=Msa0639830-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0\|0\|0\|1\|1\|1\|2\|0\|173
chr4_3	exon	36735472	36735690	36735472	ID=Msa0639830-mRNA-1:exon:8496;Parent=Msa0639830-mRNA-1
chr4_3	exon	36734912	36735214	36734912	ID=Msa0639830-mRNA-1:exon:8495;Parent=Msa0639830-mRNA-1
chr4_3	CDS	36735472	36735690	36735472	ID=Msa0639830-mRNA-1:cds;Parent=Msa0639830-mRNA-1
chr4_3	CDS	36734912	36735214	36734912	ID=Msa0639830-mRNA-1:cds;Parent=Msa0639830-mRNA-1

Gene Sequence

>Msa0639830

ATGTCTCCAGAGTACGCCCTTGATGGACATTTTTCAGTGAAGTCCGATGTTTTTAGCTTCGGTGTTGTGGTACTTGAGATTATTAGTGGAAAAAGAAACACCGGATTTTATCAAGTTGAACATGAATTGAGTCTTCTTGGATATGTAAGTATCTCGAGTTCTTATAATATGTCTAGCACATACTACGAGAAATGTTCAATCACTGTAATTGATCGCTCTGCATGGCATTTGTGGAAAGTAAGCAGGGCAATGGACTTCATAGACCAAACACTAACATGCAATGCAGAAGAATGCTTAAAATGTGTGAATGTGGGGCTATTATGCTTACAAGAAGACCCAAATGAACGTCCCACAATGTCAAATGTGGTATTTATGCTAGGAAGTGAATCTAATACTCTTCCAACTCCTAAGGAACCAGCCTTTGTTATTAGAAGATGCCCTTCAAGCAGAGCATCTACATCTAGTAAAATTGAAACTTTTTCACGTAATGAATTGACCGTCACTTTGGAAAATGGTAGGTAG

Protein sequence

>Msa0639830

MSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQVEHELSLLGYVSISSSYNMSSTYYEKCSITVIDRSAWHLWKVSRAMDFIDQTLTCNAEECLKCVNVGLLCLQEDPNERPTMSNVVFMLGSESNTLPTPKEPAFVIRRCPSSRASTSSKIETFSRNELTVTLENGR*