Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640310 | KEH29641.1 | 90.591 | 457 | 24 | 2 | 29 | 467 | 6 | 461 | 0.0 | 838 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640310 | sp|Q6H7U2|C3H13_ORYSJ | 33.258 | 445 | 224 | 15 | 53 | 453 | 11 | 426 | 1.81e-52 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640310 | A0A072UJM8 | 90.591 | 457 | 24 | 2 | 29 | 467 | 6 | 461 | 0.0 | 838 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0640310 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640310 | MtrunA17_Chr4g0024081 | 91.189 | 454 | 21 | 2 | 32 | 467 | 44 | 496 | 0.0 | 838 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640310 | AT3G21810.1 | 34.932 | 292 | 157 | 5 | 53 | 311 | 7 | 298 | 4.45e-36 | 139 |
| Msa0640310 | AT3G21810.2 | 33.333 | 237 | 137 | 2 | 96 | 311 | 38 | 274 | 2.25e-23 | 102 |
Find 103 sgRNAs with CRISPR-Local
Find 514 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATCACCAAACATAATT+TGG | 0.129454 | 4_3:-38501786 | Msa0640310:CDS |
| GCGGATCTCCTTGCAGAAAA+AGG | 0.236552 | 4_3:-38501754 | Msa0640310:CDS |
| GTTCCTGAATTCTAGAATTA+AGG | 0.245226 | 4_3:+38502299 | None:intergenic |
| TAGCCTTAATTCTAGAATTC+AGG | 0.264978 | 4_3:-38502302 | Msa0640310:CDS |
| TGATAATGAAATGGCATTAC+AGG | 0.283794 | 4_3:-38500471 | Msa0640310:CDS |
| TTCTCAGACATTTCTAGAAT+TGG | 0.297684 | 4_3:-38501869 | Msa0640310:CDS |
| TTGCTGCGGGGAATCAAATC+TGG | 0.330633 | 4_3:+38500422 | None:intergenic |
| GTTACTTCAATTCCATTGTC+AGG | 0.351030 | 4_3:+38500902 | None:intergenic |
| AAGAGGATGGGGAGTATAAA+AGG | 0.358505 | 4_3:-38502258 | Msa0640310:intron |
| GCAGGAAAGAGAGACTATTT+AGG | 0.365279 | 4_3:-38505431 | Msa0640310:intron |
| TAGAAATACTCTTGAGGATC+AGG | 0.371223 | 4_3:-38503824 | Msa0640310:intron |
| TGAAAATTCACCATTATAGT+TGG | 0.375369 | 4_3:+38507790 | None:intergenic |
| GAAAACACAAGAAAGGAATA+TGG | 0.376155 | 4_3:-38500859 | Msa0640310:CDS |
| GGTTGACGGCACTTCAATCC+TGG | 0.385159 | 4_3:+38500580 | None:intergenic |
| TCCAAATTATGTTTGGTGAT+TGG | 0.421141 | 4_3:+38501785 | None:intergenic |
| TTAAAGCATTATGTTGAAGA+AGG | 0.425995 | 4_3:-38500164 | Msa0640310:three_prime_UTR |
| GACAGAAAATGATAATGAAA+TGG | 0.435884 | 4_3:-38500480 | Msa0640310:CDS |
| CTTGTCTAGTTGTCTTTGCA+TGG | 0.441905 | 4_3:-38500085 | Msa0640310:three_prime_UTR |
| CAGAAGACATAGGAGAAAAC+AGG | 0.454769 | 4_3:-38503941 | Msa0640310:CDS |
| GACAAAACTAACCGATAGTT+GGG | 0.456546 | 4_3:+38503655 | None:intergenic |
| GTTCTGTTCCAAATTATGTT+TGG | 0.459172 | 4_3:+38501778 | None:intergenic |
| CATGTGCAAAAGAACAGTTC+TGG | 0.459711 | 4_3:+38507840 | None:intergenic |
| TCTCGAGCCGGTGAATATCT+TGG | 0.463968 | 4_3:+38505362 | None:intergenic |
| ACAATACACTTGGCGCAACT+TGG | 0.466455 | 4_3:-38507963 | Msa0640310:CDS |
| TTTAGGTAATAATGACTTGA+GGG | 0.469756 | 4_3:-38505414 | Msa0640310:CDS |
| AGACAAAACTAACCGATAGT+TGG | 0.470883 | 4_3:+38503654 | None:intergenic |
| CATGGTTTAACTAGTATTTG+TGG | 0.472021 | 4_3:-38500226 | Msa0640310:exon |
| TAACAACATTCATTCAGAAA+AGG | 0.473891 | 4_3:-38500828 | Msa0640310:intron |
| GTAAGCAATGGTGAGAATAC+TGG | 0.475904 | 4_3:-38501815 | Msa0640310:CDS |
| TTGAAGAAGAAAAGAAAGAG+TGG | 0.480913 | 4_3:+38508078 | None:intergenic |
| CGACCTCTTGCCTCTCGAGC+CGG | 0.496526 | 4_3:+38505350 | None:intergenic |
| TGCTGCGGGGAATCAAATCT+GGG | 0.499304 | 4_3:+38500423 | None:intergenic |
| TTCTAGAATTCAGGAACTTG+AGG | 0.500849 | 4_3:-38502293 | Msa0640310:CDS |
| CTCAGTTAAGCAAAGAGGAT+GGG | 0.508425 | 4_3:-38502270 | Msa0640310:CDS |
| AACTTTCAGAAATATCACTT+TGG | 0.509116 | 4_3:+38503908 | None:intergenic |
| CAGGTCCGACTTCAAAGGTT+CGG | 0.509285 | 4_3:-38501902 | Msa0640310:CDS |
| ACTTCAATCCTGGATTCCTT+CGG | 0.509539 | 4_3:+38500590 | None:intergenic |
| TCCCCGCAGCAATTATTCAC+AGG | 0.509785 | 4_3:-38500411 | Msa0640310:intron |
| AGCGTTGATATTGTAAGCAA+TGG | 0.513750 | 4_3:-38501827 | Msa0640310:CDS |
| CTGATACTAATGAAACTTCA+AGG | 0.514385 | 4_3:-38500502 | Msa0640310:CDS |
| TCAGTTAAGCAAAGAGGATG+GGG | 0.520374 | 4_3:-38502269 | Msa0640310:CDS |
| AAATTATGTTTGGTGATTGG+AGG | 0.521526 | 4_3:+38501788 | None:intergenic |
| TTACTTCAATTCCATTGTCA+GGG | 0.521676 | 4_3:+38500903 | None:intergenic |
| ACTAGGCACCAAGATCTTGA+AGG | 0.524279 | 4_3:-38500881 | Msa0640310:CDS |
| AACCTGTGAATAATTGCTGC+GGG | 0.525149 | 4_3:+38500409 | None:intergenic |
| GTTGATATTGAGCATGATAA+CGG | 0.525710 | 4_3:-38500527 | Msa0640310:CDS |
| TGAAATGGCATTACAGGTGA+AGG | 0.526645 | 4_3:-38500465 | Msa0640310:CDS |
| ATCACCTCCAAGATATTCAC+CGG | 0.528176 | 4_3:-38505369 | Msa0640310:CDS |
| CTTGAAGGAAAACACAAGAA+AGG | 0.535513 | 4_3:-38500866 | Msa0640310:CDS |
| ATATACAGCCGAAGGAATCC+AGG | 0.536998 | 4_3:-38500598 | Msa0640310:intron |
| TTCTAGAATTGGTGCTGATG+AGG | 0.537743 | 4_3:-38501858 | Msa0640310:CDS |
| TGAGGTCTCCAGAGAAAAGA+AGG | 0.539215 | 4_3:-38504889 | Msa0640310:intron |
| AGCAGCAGCCCATGTGGACA+TGG | 0.545851 | 4_3:-38500244 | Msa0640310:CDS |
| AAGAGTATTTCTAGAACCAA+AGG | 0.550868 | 4_3:+38503834 | None:intergenic |
| TTTCTCAGCAACAATACACT+TGG | 0.552357 | 4_3:-38507973 | Msa0640310:intron |
| AGAGGTCGGCAGACCATTCG+CGG | 0.553269 | 4_3:-38505335 | Msa0640310:intron |
| CTTCTTGAACACTCTCATCC+AGG | 0.556266 | 4_3:+38502329 | None:intergenic |
| ATCTTGTGTCTAACCGCGAA+TGG | 0.556846 | 4_3:+38505322 | None:intergenic |
| CGAGCCGGTGAATATCTTGG+AGG | 0.558434 | 4_3:+38505365 | None:intergenic |
| CTAGTTAAACCATGTCCACA+TGG | 0.563579 | 4_3:+38500235 | None:intergenic |
| GATCACAGGTCCGACTTCAA+AGG | 0.566508 | 4_3:-38501907 | Msa0640310:intron |
| AAGATATTCACCGGCTCGAG+AGG | 0.567135 | 4_3:-38505360 | Msa0640310:CDS |
| TGTGAAGAGGCCCCTGACAA+TGG | 0.567240 | 4_3:-38500914 | Msa0640310:CDS |
| ATTCTGTACTTGTCTTTGCA+AGG | 0.567354 | 4_3:-38500050 | Msa0640310:three_prime_UTR |
| TAACTTAATGTGCAGTATGA+GGG | 0.569651 | 4_3:-38500309 | Msa0640310:intron |
| GACAACATGAGCTGCCATGC+TGG | 0.571700 | 4_3:+38500559 | None:intergenic |
| TCGATTGAAACAGCAAGAAG+TGG | 0.577315 | 4_3:-38500983 | Msa0640310:CDS |
| TGGTTCTAGAAATACTCTTG+AGG | 0.579358 | 4_3:-38503830 | Msa0640310:CDS |
| GGATGAGAGTGTTCAAGAAG+TGG | 0.580126 | 4_3:-38502326 | Msa0640310:CDS |
| GAACCGAAAATCCCAACTAT+CGG | 0.583849 | 4_3:-38503666 | Msa0640310:intron |
| GCTCAGTTAAGCAAAGAGGA+TGG | 0.587523 | 4_3:-38502271 | Msa0640310:CDS |
| TACTTCAATTCCATTGTCAG+GGG | 0.588269 | 4_3:+38500904 | None:intergenic |
| TGAGCTGCCATGCTGGTTGA+CGG | 0.590544 | 4_3:+38500566 | None:intergenic |
| TCAACTTCGAACAATTCGAT+CGG | 0.591189 | 4_3:+38507933 | None:intergenic |
| AAACAGCAAGAAGTGGGAAG+CGG | 0.597796 | 4_3:-38500976 | Msa0640310:CDS |
| ATTTAGGTAATAATGACTTG+AGG | 0.602441 | 4_3:-38505415 | Msa0640310:CDS |
| GATCTCCGAACCTTTGAAGT+CGG | 0.606184 | 4_3:+38501897 | None:intergenic |
| GCATGCAGAACGAGATTCTG+TGG | 0.609093 | 4_3:-38501729 | Msa0640310:CDS |
| CGATTGAAACAGCAAGAAGT+GGG | 0.609465 | 4_3:-38500982 | Msa0640310:CDS |
| ACAATGGAATTGAAGTAACT+AGG | 0.622626 | 4_3:-38500898 | Msa0640310:CDS |
| GAAATGGCATTACAGGTGAA+GGG | 0.623055 | 4_3:-38500464 | Msa0640310:CDS |
| TGAAGTGCCGTCAACCAGCA+TGG | 0.625663 | 4_3:-38500573 | Msa0640310:CDS |
| GATTGACAAGAGTTGTGAAG+AGG | 0.628812 | 4_3:-38500927 | Msa0640310:CDS |
| GGCAGCTCATGTTGTCGATG+AGG | 0.635035 | 4_3:-38500552 | Msa0640310:CDS |
| TGTGGATGGTCTTGATGAAG+AGG | 0.636361 | 4_3:-38500268 | Msa0640310:CDS |
| GGAGAAGTAACGCTGAACAC+TGG | 0.644160 | 4_3:+38508099 | None:intergenic |
| TAACCTGTGAATAATTGCTG+CGG | 0.646818 | 4_3:+38500408 | None:intergenic |
| AACGAGAATGTGGATGTGGA+TGG | 0.650385 | 4_3:-38500282 | Msa0640310:CDS |
| TCACCGGCTCGAGAGGCAAG+AGG | 0.653046 | 4_3:-38505353 | Msa0640310:CDS |
| TTATGTGCGCTTTATCAGAA+CGG | 0.656000 | 4_3:-38507875 | Msa0640310:CDS |
| TGAGGGATAAACTTGACAGA+AGG | 0.656295 | 4_3:-38505397 | Msa0640310:CDS |
| AGAGGCAGCAGCAGCCCATG+TGG | 0.658557 | 4_3:-38500250 | Msa0640310:CDS |
| CGGCTCGAGAGGCAAGAGGT+CGG | 0.660465 | 4_3:-38505349 | Msa0640310:CDS |
| TGAGGCTCAGTTAAGCAAAG+AGG | 0.663346 | 4_3:-38502275 | Msa0640310:CDS |
| GGTGCAGTGACAGAAGACAT+AGG | 0.669837 | 4_3:-38503951 | Msa0640310:intron |
| AGGAGAAAACAGGATATCAG+TGG | 0.680364 | 4_3:-38503931 | Msa0640310:CDS |
| TAGTTAAACCATGTCCACAT+GGG | 0.685652 | 4_3:+38500236 | None:intergenic |
| CATAATTTGGAACAGAACAG+CGG | 0.694176 | 4_3:-38501773 | Msa0640310:CDS |
| AACACTGGTAGAGCTACTCG+TGG | 0.699304 | 4_3:+38508114 | None:intergenic |
| ACCTGTGAATAATTGCTGCG+GGG | 0.699773 | 4_3:+38500410 | None:intergenic |
| GCTGCGGGGAATCAAATCTG+GGG | 0.713601 | 4_3:+38500424 | None:intergenic |
| TCTGTGGAAGAGTTACAACA+AGG | 0.739554 | 4_3:-38501713 | Msa0640310:intron |
| TTGCAGAATATAGTCCACTG+AGG | 0.772392 | 4_3:-38504907 | Msa0640310:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCTTTTTTTTTTTTTTTTTA+AGG | - | chr4_3:38502620-38502639 | Msa0640310:intron | 10.0% |
| !!! | TTTTTTTGTAATTTTAGTTA+CGG | - | chr4_3:38503736-38503755 | Msa0640310:intron | 10.0% |
| !! | AAAATGAATAAATAAAAATC+AGG | + | chr4_3:38505952-38505971 | None:intergenic | 10.0% |
| !!! | ATATACCAATAATTTTATTT+GGG | - | chr4_3:38506925-38506944 | Msa0640310:intron | 10.0% |
| !! | AATTGAATAAGGAAAAAAAA+AGG | + | chr4_3:38500073-38500092 | None:intergenic | 15.0% |
| !!! | TTCAATTATTTTTTGGATTT+TGG | - | chr4_3:38501133-38501152 | Msa0640310:intron | 15.0% |
| !! | ATGATATAAGTTTAATCTAT+GGG | - | chr4_3:38501414-38501433 | Msa0640310:intron | 15.0% |
| !! | ATTGAATTCAGATAAATAAA+TGG | + | chr4_3:38501631-38501650 | None:intergenic | 15.0% |
| !! | AATTCATATATGAAATGATT+GGG | + | chr4_3:38502077-38502096 | None:intergenic | 15.0% |
| !! | TACAAATGATATATAATACA+AGG | + | chr4_3:38503612-38503631 | None:intergenic | 15.0% |
| !!! | TTTTTTGTAATTTTAGTTAC+GGG | - | chr4_3:38503737-38503756 | Msa0640310:intron | 15.0% |
| !!! | AGTTTATATAACATTTTAGA+TGG | + | chr4_3:38504569-38504588 | None:intergenic | 15.0% |
| !!! | ACATTCTTTCTTTAATTTTT+TGG | - | chr4_3:38506127-38506146 | Msa0640310:intron | 15.0% |
| !!! | CATTCTTTCTTTAATTTTTT+GGG | - | chr4_3:38506128-38506147 | Msa0640310:intron | 15.0% |
| !!! | TTTGGTAAATATAGTTATTT+TGG | - | chr4_3:38506411-38506430 | Msa0640310:intron | 15.0% |
| !! | TAATAGTTGTTAATCATAAA+CGG | - | chr4_3:38506655-38506674 | Msa0640310:intron | 15.0% |
| !!! | CATATACCAATAATTTTATT+TGG | - | chr4_3:38506924-38506943 | Msa0640310:intron | 15.0% |
| !! | CTTAAAAGTAGAATTGAATA+AGG | + | chr4_3:38500084-38500103 | None:intergenic | 20.0% |
| !! | GAGTACAACTAATAAAAAAA+GGG | + | chr4_3:38500702-38500721 | None:intergenic | 20.0% |
| !!! | TTTGCACTTCAATTATTTTT+TGG | - | chr4_3:38501126-38501145 | Msa0640310:intron | 20.0% |
| !! | CATGATATAAGTTTAATCTA+TGG | - | chr4_3:38501413-38501432 | Msa0640310:intron | 20.0% |
| !! | TGATATAAGTTTAATCTATG+GGG | - | chr4_3:38501415-38501434 | Msa0640310:intron | 20.0% |
| !! | TGAGGAAATAAATTATATAG+TGG | - | chr4_3:38501534-38501553 | Msa0640310:intron | 20.0% |
| !! | ATGTGAATTAATTAGATTAC+AGG | + | chr4_3:38501579-38501598 | None:intergenic | 20.0% |
| !! | ATTAATATGCTCAATTTCAA+CGG | - | chr4_3:38501774-38501793 | Msa0640310:CDS | 20.0% |
| !! | GAATTCATATATGAAATGAT+TGG | + | chr4_3:38502078-38502097 | None:intergenic | 20.0% |
| !!! | ATGATATATGATATTCCTTT+TGG | - | chr4_3:38502157-38502176 | Msa0640310:intron | 20.0% |
| !! | AAAATGTAAAATTGCTATCA+TGG | + | chr4_3:38502897-38502916 | None:intergenic | 20.0% |
| !! | GCTTAAATATCTCTTAAAAA+TGG | + | chr4_3:38502969-38502988 | None:intergenic | 20.0% |
| !!! | TTTCTTATTTATCATTCATG+AGG | + | chr4_3:38503432-38503451 | None:intergenic | 20.0% |
| !!! | TTTTTGTAATTTTAGTTACG+GGG | - | chr4_3:38503738-38503757 | Msa0640310:intron | 20.0% |
| !! | ATATTTGATGTGCAAATTAA+AGG | + | chr4_3:38504070-38504089 | None:intergenic | 20.0% |
| !! | TTTATACTAAATCATAGACA+AGG | + | chr4_3:38504110-38504129 | None:intergenic | 20.0% |
| !!! | ATCATTTTTTCTTCTTTAAC+TGG | + | chr4_3:38504239-38504258 | None:intergenic | 20.0% |
| !!! | CACATGTTTATTTTTATTCT+TGG | - | chr4_3:38504359-38504378 | Msa0640310:intron | 20.0% |
| !! | TTTGTTAGGATATATTGTAA+TGG | - | chr4_3:38504691-38504710 | Msa0640310:intron | 20.0% |
| !! | ATAAGTCTATTTGTATAACT+AGG | - | chr4_3:38504778-38504797 | Msa0640310:intron | 20.0% |
| !! | TAAGTCTATTTGTATAACTA+GGG | - | chr4_3:38504779-38504798 | Msa0640310:intron | 20.0% |
| !! | ACTAAGAAATATGATAGAAT+AGG | + | chr4_3:38504903-38504922 | None:intergenic | 20.0% |
| !! | TGACTTATTCATATTTATGT+TGG | + | chr4_3:38505190-38505209 | None:intergenic | 20.0% |
| !! | ATAAATATGAATAAGTCACA+AGG | - | chr4_3:38505192-38505211 | Msa0640310:intron | 20.0% |
| !! | TAAATATGAATAAGTCACAA+GGG | - | chr4_3:38505193-38505212 | Msa0640310:intron | 20.0% |
| !!! | TTAAAAAAAAGGCATGATTA+AGG | + | chr4_3:38505423-38505442 | None:intergenic | 20.0% |
| !!! | TGCCTTTTTTTTAAATAGAT+TGG | - | chr4_3:38505429-38505448 | Msa0640310:CDS | 20.0% |
| !! | AGCCAATCTATTTAAAAAAA+AGG | + | chr4_3:38505434-38505453 | None:intergenic | 20.0% |
| !!! | TTAAATCTGATACTGATTTT+GGG | - | chr4_3:38505560-38505579 | Msa0640310:intron | 20.0% |
| !! | TTTCATTAATATTCTCAAGA+CGG | + | chr4_3:38505600-38505619 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCACATTTTTTCA+GGG | + | chr4_3:38505642-38505661 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTCACATTTTTTC+AGG | + | chr4_3:38505643-38505662 | None:intergenic | 20.0% |
| !! | TATTTCAACTGAAAAAACAA+AGG | + | chr4_3:38505667-38505686 | None:intergenic | 20.0% |
| !! | TGAAATATTTATCCACTTTA+AGG | - | chr4_3:38505680-38505699 | Msa0640310:intron | 20.0% |
| !! | AATTTAATACAACCTTAAAG+TGG | + | chr4_3:38505695-38505714 | None:intergenic | 20.0% |
| !!! | GTACAAATGTATATTTTTGA+AGG | - | chr4_3:38505739-38505758 | Msa0640310:intron | 20.0% |
| !! | ATCAAGAATTGTCAAAATAA+TGG | + | chr4_3:38505914-38505933 | None:intergenic | 20.0% |
| !! | TATTGTGAATAATGTAGATT+TGG | - | chr4_3:38506565-38506584 | Msa0640310:intron | 20.0% |
| !! | CATATTGAAAAAGAACATAA+AGG | - | chr4_3:38506714-38506733 | Msa0640310:intron | 20.0% |
| !! | TTATGCCCAAATAAAATTAT+TGG | + | chr4_3:38506933-38506952 | None:intergenic | 20.0% |
| !! | TACTAATTCAATTAATTCCA+TGG | - | chr4_3:38507290-38507309 | Msa0640310:intron | 20.0% |
| ! | TGAAAATTCACCATTATAGT+TGG | + | chr4_3:38500308-38500327 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTTTTGTTGAGAT+AGG | - | chr4_3:38500359-38500378 | Msa0640310:intron | 25.0% |
| ! | GGAGTACAACTAATAAAAAA+AGG | + | chr4_3:38500703-38500722 | None:intergenic | 25.0% |
| !! | TTTTATTAGTTGTACTCCTA+AGG | - | chr4_3:38500705-38500724 | Msa0640310:intron | 25.0% |
| ! | TTTATTAGTTGTACTCCTAA+GGG | - | chr4_3:38500706-38500725 | Msa0640310:intron | 25.0% |
| ! | TTTGCGAGAACTTATAAAAA+GGG | - | chr4_3:38500784-38500803 | Msa0640310:intron | 25.0% |
| !!! | AACTAATCACTATTGTTTTG+CGG | - | chr4_3:38500969-38500988 | Msa0640310:CDS | 25.0% |
| !! | TACAAAGTGTTATCAAATAG+CGG | - | chr4_3:38501004-38501023 | Msa0640310:intron | 25.0% |
| !! | ATTGTACCTGTTTTATATCT+CGG | - | chr4_3:38501173-38501192 | Msa0640310:intron | 25.0% |
| !!! | ATAACATACTTAACTTGCAT+GGG | - | chr4_3:38501464-38501483 | Msa0640310:intron | 25.0% |
| ! | ATTCAATACTCTTAAAACAG+AGG | - | chr4_3:38501644-38501663 | Msa0640310:intron | 25.0% |
| ! | TGGATGCTTATCTAATAATA+TGG | - | chr4_3:38501670-38501689 | Msa0640310:intron | 25.0% |
| !! | TGTTTGACATAGTATTTTCT+TGG | - | chr4_3:38501921-38501940 | Msa0640310:intron | 25.0% |
| ! | ACACTTGTTCTGTATATTTA+TGG | + | chr4_3:38501968-38501987 | None:intergenic | 25.0% |
| ! | TCTTTATTACTTAAGCATCT+TGG | - | chr4_3:38502272-38502291 | Msa0640310:CDS | 25.0% |
| ! | ACATAATATATAACCTCGAA+TGG | + | chr4_3:38502308-38502327 | None:intergenic | 25.0% |
| !!! | ATATCTTTGAAGTGTAATCA+AGG | + | chr4_3:38502383-38502402 | None:intergenic | 25.0% |
| ! | AAAGATATAAGCTACATACA+TGG | - | chr4_3:38502395-38502414 | Msa0640310:intron | 25.0% |
| ! | AAGATATAAGCTACATACAT+GGG | - | chr4_3:38502396-38502415 | Msa0640310:intron | 25.0% |
| ! | ACTATATCTGTCATAATTTG+AGG | - | chr4_3:38502423-38502442 | Msa0640310:intron | 25.0% |
| ! | CTATATCTGTCATAATTTGA+GGG | - | chr4_3:38502424-38502443 | Msa0640310:intron | 25.0% |
| ! | TCTCTTATTATTCCTGATAT+TGG | - | chr4_3:38502510-38502529 | Msa0640310:intron | 25.0% |
| !!! | AAAGCTTATTTTCTTATTGC+AGG | - | chr4_3:38502646-38502665 | Msa0640310:intron | 25.0% |
| ! | ATTTAGGTAATAATGACTTG+AGG | - | chr4_3:38502680-38502699 | Msa0640310:intron | 25.0% |
| ! | TTTAGGTAATAATGACTTGA+GGG | - | chr4_3:38502681-38502700 | Msa0640310:intron | 25.0% |
| !!! | TTTTTAGTTTAGTCATACCA+TGG | - | chr4_3:38502833-38502852 | Msa0640310:intron | 25.0% |
| ! | ATTTCAATTCATGGAACATT+AGG | + | chr4_3:38503169-38503188 | None:intergenic | 25.0% |
| ! | TATTCTGCAATTTCAATTCA+TGG | + | chr4_3:38503178-38503197 | None:intergenic | 25.0% |
| !! | TTAATTTACCTTCTTTTCTC+TGG | + | chr4_3:38503217-38503236 | None:intergenic | 25.0% |
| ! | AAGTATATATTTGTCACATC+TGG | + | chr4_3:38503487-38503506 | None:intergenic | 25.0% |
| !! | TTCATGAAACTTATTTGCTA+TGG | - | chr4_3:38503689-38503708 | Msa0640310:CDS | 25.0% |
| !!! | TCATGAAACTTATTTGCTAT+GGG | - | chr4_3:38503690-38503709 | Msa0640310:CDS | 25.0% |
| ! | ATGGAATTCTATTCTATGTT+TGG | - | chr4_3:38503865-38503884 | Msa0640310:CDS | 25.0% |
| ! | CATGATTTGATATAAGAATG+TGG | - | chr4_3:38503910-38503929 | Msa0640310:CDS | 25.0% |
| !!! | GGTTATTTTGATTCAACTAA+AGG | - | chr4_3:38503931-38503950 | Msa0640310:CDS | 25.0% |
| !!! | TGGTTCTATTTTGTACTATT+TGG | + | chr4_3:38503964-38503983 | None:intergenic | 25.0% |
| ! | TGGAATGGAATGAAATTAAA+TGG | + | chr4_3:38503984-38504003 | None:intergenic | 25.0% |
| ! | AACTTTCAGAAATATCACTT+TGG | + | chr4_3:38504190-38504209 | None:intergenic | 25.0% |
| ! | GAAGAAAAAATGATTTCCTT+TGG | - | chr4_3:38504245-38504264 | Msa0640310:intron | 25.0% |
| ! | GAAAAAACAAGAGAATGTAT+TGG | + | chr4_3:38504332-38504351 | None:intergenic | 25.0% |
| ! | AATGACACAAGAAAACAATA+TGG | + | chr4_3:38504530-38504549 | None:intergenic | 25.0% |
| !!! | TATTGTTTTCTTGTGTCATT+TGG | - | chr4_3:38504530-38504549 | Msa0640310:intron | 25.0% |
| !! | GCTTTCTTTTGATATTTGTT+AGG | - | chr4_3:38504677-38504696 | Msa0640310:intron | 25.0% |
| ! | ACTACTTTAACTACACTAAT+TGG | + | chr4_3:38504717-38504736 | None:intergenic | 25.0% |
| ! | AAGTCTATTTGTATAACTAG+GGG | - | chr4_3:38504780-38504799 | Msa0640310:intron | 25.0% |
| !! | TTTCTAAAGAATCCAATTCT+TGG | - | chr4_3:38504933-38504952 | Msa0640310:intron | 25.0% |
| !! | TTCTAAAGAATCCAATTCTT+GGG | - | chr4_3:38504934-38504953 | Msa0640310:intron | 25.0% |
| ! | TAAACTATTCGATATAAACC+TGG | + | chr4_3:38505021-38505040 | None:intergenic | 25.0% |
| !! | TAACTTTGAAAAAATTCACC+CGG | - | chr4_3:38505039-38505058 | Msa0640310:intron | 25.0% |
| !!! | ATTTCACTCGTTTTTTGTTA+GGG | + | chr4_3:38505124-38505143 | None:intergenic | 25.0% |
| ! | TAACAAAAAACGAGTGAAAT+GGG | - | chr4_3:38505124-38505143 | Msa0640310:intron | 25.0% |
| !! | TTTTCTAAGTCTAACACTAT+GGG | + | chr4_3:38505258-38505277 | None:intergenic | 25.0% |
| !! | ATTTTCTAAGTCTAACACTA+TGG | + | chr4_3:38505259-38505278 | None:intergenic | 25.0% |
| ! | GTTACTATTTCCTATCTATT+AGG | + | chr4_3:38505313-38505332 | None:intergenic | 25.0% |
| !!! | CTTAAATCTGATACTGATTT+TGG | - | chr4_3:38505559-38505578 | Msa0640310:intron | 25.0% |
| !!! | CCTTATTTTTGAAGTAATTC+TGG | + | chr4_3:38505988-38506007 | None:intergenic | 25.0% |
| ! | CCAGAATTACTTCAAAAATA+AGG | - | chr4_3:38505985-38506004 | Msa0640310:intron | 25.0% |
| ! | CAATCAATTCATATGATTTG+AGG | - | chr4_3:38506086-38506105 | Msa0640310:intron | 25.0% |
| !! | AACATAAAGGTATGTGTATA+TGG | - | chr4_3:38506727-38506746 | Msa0640310:intron | 25.0% |
| ! | TAACAACATTCATTCAGAAA+AGG | - | chr4_3:38507267-38507286 | Msa0640310:intron | 25.0% |
| !! | CACTACATAAGATTTTCAAA+TGG | - | chr4_3:38507429-38507448 | Msa0640310:intron | 25.0% |
| ! | TGTATATTCATGGTTATGAA+TGG | + | chr4_3:38507484-38507503 | None:intergenic | 25.0% |
| !! | GACAGAAAATGATAATGAAA+TGG | - | chr4_3:38507615-38507634 | Msa0640310:intron | 25.0% |
| !! | TTAAAGCATTATGTTGAAGA+AGG | - | chr4_3:38507931-38507950 | Msa0640310:CDS | 25.0% |
| ! | AAAACCCAAAAAAATGACAT+AGG | + | chr4_3:38508107-38508126 | None:intergenic | 25.0% |
| TTGAAGAAGAAAAGAAAGAG+TGG | + | chr4_3:38500020-38500039 | None:intergenic | 30.0% | |
| ! | TCTTTTCTTCTTCAACTTCA+AGG | - | chr4_3:38500025-38500044 | Msa0640310:three_prime_UTR | 30.0% |
| AGGAAAAAAAAAGGTTCGAT+GGG | + | chr4_3:38500064-38500083 | None:intergenic | 30.0% | |
| AAGGAAAAAAAAAGGTTCGA+TGG | + | chr4_3:38500065-38500084 | None:intergenic | 30.0% | |
| TGTATTGTTGCTGAGAAAAA+GGG | + | chr4_3:38500120-38500139 | None:intergenic | 30.0% | |
| ! | CGATTTTCTTCCAACTATAA+TGG | - | chr4_3:38500295-38500314 | Msa0640310:CDS | 30.0% |
| !!! | GTTTTTTGTTGAGATAGGTT+TGG | - | chr4_3:38500364-38500383 | Msa0640310:intron | 30.0% |
| ! | AGATAGGTTTGGATTTGTTT+GGG | - | chr4_3:38500375-38500394 | Msa0640310:intron | 30.0% |
| ATTGTTAGTTGAGGGATATT+TGG | - | chr4_3:38500465-38500484 | Msa0640310:CDS | 30.0% | |
| ! | TATTTGGTGGATGTAAATTG+TGG | - | chr4_3:38500481-38500500 | Msa0640310:CDS | 30.0% |
| AATTATTACTTGTACCCCTA+AGG | - | chr4_3:38500505-38500524 | Msa0640310:CDS | 30.0% | |
| ATTATTACTTGTACCCCTAA+GGG | - | chr4_3:38500506-38500525 | Msa0640310:CDS | 30.0% | |
| ! | GACTATTTGAGTTTATCTAC+TGG | - | chr4_3:38500741-38500760 | Msa0640310:intron | 30.0% |
| CTTTGCGAGAACTTATAAAA+AGG | - | chr4_3:38500783-38500802 | Msa0640310:intron | 30.0% | |
| ! | GAAAAGAAATATAGTTTGCC+AGG | + | chr4_3:38501207-38501226 | None:intergenic | 30.0% |
| ! | GGCAAACTATATTTCTTTTC+TGG | - | chr4_3:38501207-38501226 | Msa0640310:intron | 30.0% |
| TGTTTGTAAGTTCTTCATTC+AGG | + | chr4_3:38501256-38501275 | None:intergenic | 30.0% | |
| !! | GATAACATACTTAACTTGCA+TGG | - | chr4_3:38501463-38501482 | Msa0640310:intron | 30.0% |
| !! | TAACATACTTAACTTGCATG+GGG | - | chr4_3:38501465-38501484 | Msa0640310:intron | 30.0% |
| CATTGCATGAAGAAAATTTG+AGG | - | chr4_3:38501516-38501535 | Msa0640310:intron | 30.0% | |
| ATATAGTGGTGACACTTTAT+CGG | - | chr4_3:38501548-38501567 | Msa0640310:intron | 30.0% | |
| CATACATATGCAATAACACA+TGG | - | chr4_3:38501732-38501751 | Msa0640310:CDS | 30.0% | |
| TGGATCTTATGATATTCCTT+TGG | - | chr4_3:38502111-38502130 | Msa0640310:intron | 30.0% | |
| GGATCTTATGATATTCCTTT+GGG | - | chr4_3:38502112-38502131 | Msa0640310:intron | 30.0% | |
| ATATCAAATCTCATAGCCTT+CGG | - | chr4_3:38502244-38502263 | Msa0640310:intron | 30.0% | |
| GAACATTAGGAAAGAGAAAA+GGG | + | chr4_3:38503156-38503175 | None:intergenic | 30.0% | |
| ACAAAAGTAGTAGACAACAT+TGG | + | chr4_3:38503286-38503305 | None:intergenic | 30.0% | |
| GATATATAATACAAGGACAC+CGG | + | chr4_3:38503605-38503624 | None:intergenic | 30.0% | |
| CATTTGTAATTGTTAGTCGA+TGG | - | chr4_3:38503624-38503643 | Msa0640310:intron | 30.0% | |
| ATTCTTACTCTCAATACACT+TGG | - | chr4_3:38503805-38503824 | Msa0640310:intron | 30.0% | |
| TTGATGTGCAAATTAAAGGT+TGG | + | chr4_3:38504066-38504085 | None:intergenic | 30.0% | |
| !! | AAGAGTATTTCTAGAACCAA+AGG | + | chr4_3:38504264-38504283 | None:intergenic | 30.0% |
| CAATATGGTCAATTCTGTTT+GGG | + | chr4_3:38504515-38504534 | None:intergenic | 30.0% | |
| ACAATATGGTCAATTCTGTT+TGG | + | chr4_3:38504516-38504535 | None:intergenic | 30.0% | |
| ATAGAAGTCAGTTAGTTAGT+TGG | - | chr4_3:38504748-38504767 | Msa0640310:intron | 30.0% | |
| TAGAAGTCAGTTAGTTAGTT+GGG | - | chr4_3:38504749-38504768 | Msa0640310:intron | 30.0% | |
| AGTAGTAACTCTATTGTGAA+GGG | - | chr4_3:38504851-38504870 | Msa0640310:intron | 30.0% | |
| TCCACAAATTACTAGACAAA+AGG | - | chr4_3:38505075-38505094 | Msa0640310:intron | 30.0% | |
| ! | ACCTTTTGTCTAGTAATTTG+TGG | + | chr4_3:38505079-38505098 | None:intergenic | 30.0% |
| !!! | CATTTCACTCGTTTTTTGTT+AGG | + | chr4_3:38505125-38505144 | None:intergenic | 30.0% |
| CTAACAAAAAACGAGTGAAA+TGG | - | chr4_3:38505123-38505142 | Msa0640310:intron | 30.0% | |
| !! | CTGGTTTGATCTCTAATTTT+TGG | + | chr4_3:38505153-38505172 | None:intergenic | 30.0% |
| ACTATGAAAGCCTAATAGAT+AGG | - | chr4_3:38505300-38505319 | Msa0640310:intron | 30.0% | |
| AGGAAATAGTAACAGTGTAA+CGG | - | chr4_3:38505320-38505339 | Msa0640310:intron | 30.0% | |
| AGGGCAAAATCATCTTATAA+GGG | - | chr4_3:38505502-38505521 | Msa0640310:intron | 30.0% | |
| !!! | GATTTCAAGTCTTTGTTTTG+AGG | - | chr4_3:38505536-38505555 | Msa0640310:intron | 30.0% |
| !!! | TTCACATTTTTTCAGGGAAA+TGG | + | chr4_3:38505636-38505655 | None:intergenic | 30.0% |
| !! | TAGCCTTAATTCTAGAATTC+AGG | - | chr4_3:38505793-38505812 | Msa0640310:intron | 30.0% |
| !! | GTTCCTGAATTCTAGAATTA+AGG | + | chr4_3:38505799-38505818 | None:intergenic | 30.0% |
| !! | TTCTCAGACATTTCTAGAAT+TGG | - | chr4_3:38506226-38506245 | Msa0640310:intron | 30.0% |
| ! | AAATTATGTTTGGTGATTGG+AGG | + | chr4_3:38506310-38506329 | None:intergenic | 30.0% |
| TCCAATCACCAAACATAATT+TGG | - | chr4_3:38506309-38506328 | Msa0640310:intron | 30.0% | |
| ! | TCCAAATTATGTTTGGTGAT+TGG | + | chr4_3:38506313-38506332 | None:intergenic | 30.0% |
| GTTCTGTTCCAAATTATGTT+TGG | + | chr4_3:38506320-38506339 | None:intergenic | 30.0% | |
| ! | CTTATGTTTTGTAACCTGTA+TGG | - | chr4_3:38506598-38506617 | Msa0640310:intron | 30.0% |
| TGAAATGAAACGAGAATATG+AGG | + | chr4_3:38506696-38506715 | None:intergenic | 30.0% | |
| AAATTGTGAATACGTGTCTT+TGG | + | chr4_3:38506824-38506843 | None:intergenic | 30.0% | |
| TTACTTCAATTCCATTGTCA+GGG | + | chr4_3:38507195-38507214 | None:intergenic | 30.0% | |
| ACAATGGAATTGAAGTAACT+AGG | - | chr4_3:38507197-38507216 | Msa0640310:intron | 30.0% | |
| GAAAACACAAGAAAGGAATA+TGG | - | chr4_3:38507236-38507255 | Msa0640310:intron | 30.0% | |
| ATGACTGAAACAAAAGAAAC+CGG | + | chr4_3:38507382-38507401 | None:intergenic | 30.0% | |
| ! | AGATTTTCAAATGGTTATCG+TGG | - | chr4_3:38507438-38507457 | Msa0640310:intron | 30.0% |
| GTTGATATTGAGCATGATAA+CGG | - | chr4_3:38507568-38507587 | Msa0640310:intron | 30.0% | |
| CTGATACTAATGAAACTTCA+AGG | - | chr4_3:38507593-38507612 | Msa0640310:intron | 30.0% | |
| ! | TGATAATGAAATGGCATTAC+AGG | - | chr4_3:38507624-38507643 | Msa0640310:intron | 30.0% |
| ACAAGTGTCTATAGCTTATA+AGG | + | chr4_3:38507743-38507762 | None:intergenic | 30.0% | |
| TTAACTTAATGTGCAGTATG+AGG | - | chr4_3:38507785-38507804 | Msa0640310:intron | 30.0% | |
| TAACTTAATGTGCAGTATGA+GGG | - | chr4_3:38507786-38507805 | Msa0640310:intron | 30.0% | |
| CATGGTTTAACTAGTATTTG+TGG | - | chr4_3:38507869-38507888 | Msa0640310:CDS | 30.0% | |
| !!! | TGGTTTCTAGCTTTTTGTTT+TGG | - | chr4_3:38507889-38507908 | Msa0640310:CDS | 30.0% |
| !!! | GGTTTCTAGCTTTTTGTTTT+GGG | - | chr4_3:38507890-38507909 | Msa0640310:CDS | 30.0% |
| !!! | GTTTCTAGCTTTTTGTTTTG+GGG | - | chr4_3:38507891-38507910 | Msa0640310:CDS | 30.0% |
| !!! | TTTCTAGCTTTTTGTTTTGG+GGG | - | chr4_3:38507892-38507911 | Msa0640310:CDS | 30.0% |
| ! | GAAGGATTTTCTAATAGCAT+AGG | - | chr4_3:38507949-38507968 | Msa0640310:CDS | 30.0% |
| !!! | ACATGCCTATGTCATTTTTT+TGG | - | chr4_3:38508099-38508118 | Msa0640310:CDS | 30.0% |
| !!! | CATGCCTATGTCATTTTTTT+GGG | - | chr4_3:38508100-38508119 | Msa0640310:CDS | 30.0% |
| GTGTATTGTTGCTGAGAAAA+AGG | + | chr4_3:38500121-38500140 | None:intergenic | 35.0% | |
| TTTCTCAGCAACAATACACT+TGG | - | chr4_3:38500122-38500141 | Msa0640310:three_prime_UTR | 35.0% | |
| TCAACTTCGAACAATTCGAT+CGG | + | chr4_3:38500165-38500184 | None:intergenic | 35.0% | |
| TTATGTGCGCTTTATCAGAA+CGG | - | chr4_3:38500220-38500239 | Msa0640310:exon | 35.0% | |
| ! | AGAACTGTTCTTTTGCACAT+GGG | - | chr4_3:38500257-38500276 | Msa0640310:CDS | 35.0% |
| ! | GAGATAGGTTTGGATTTGTT+TGG | - | chr4_3:38500374-38500393 | Msa0640310:intron | 35.0% |
| AGTGGTTTGATTGTTAGTTG+AGG | - | chr4_3:38500456-38500475 | Msa0640310:CDS | 35.0% | |
| GTGGTTTGATTGTTAGTTGA+GGG | - | chr4_3:38500457-38500476 | Msa0640310:CDS | 35.0% | |
| TTATTACTTGTACCCCTAAG+GGG | - | chr4_3:38500507-38500526 | Msa0640310:CDS | 35.0% | |
| CTCAAATAGTCAATCCAAAC+AGG | + | chr4_3:38500732-38500751 | None:intergenic | 35.0% | |
| ATGCTTATGCTATAAGTTGC+AGG | - | chr4_3:38500889-38500908 | Msa0640310:CDS | 35.0% | |
| GTGTTGTCAAATAAGTAGCA+TGG | - | chr4_3:38500940-38500959 | Msa0640310:CDS | 35.0% | |
| TTATCAAATAGCGGCTATTG+TGG | - | chr4_3:38501013-38501032 | Msa0640310:intron | 35.0% | |
| ATCATAATGTAAGTCCGTTG+TGG | + | chr4_3:38501090-38501109 | None:intergenic | 35.0% | |
| CAAGAACCGAGATATAAAAC+AGG | + | chr4_3:38501182-38501201 | None:intergenic | 35.0% | |
| ! | GTGGACTACAAAATAGTTCA+AGG | + | chr4_3:38501333-38501352 | None:intergenic | 35.0% |
| TACTCTTAAAACAGAGGATC+TGG | - | chr4_3:38501650-38501669 | Msa0640310:intron | 35.0% | |
| ATCTCCTTTCACAGAATCAA+TGG | + | chr4_3:38501705-38501724 | None:intergenic | 35.0% | |
| ATATGCTCAATTTCAACGGT+AGG | - | chr4_3:38501778-38501797 | Msa0640310:CDS | 35.0% | |
| !! | TGCTGATTGGTTTATCTTAG+AGG | - | chr4_3:38501886-38501905 | Msa0640310:CDS | 35.0% |
| TTTCCTGAAGGATCTTAATC+AGG | - | chr4_3:38501987-38502006 | Msa0640310:intron | 35.0% | |
| TGAATTCCACTACTTAAGAG+TGG | - | chr4_3:38502091-38502110 | Msa0640310:intron | 35.0% | |
| TAAGATCCACTCTTAAGTAG+TGG | + | chr4_3:38502100-38502119 | None:intergenic | 35.0% | |
| AGTAATAAAGATCCATCCGA+AGG | + | chr4_3:38502263-38502282 | None:intergenic | 35.0% | |
| AAGTGTAATCAAGGTAGCAA+TGG | + | chr4_3:38502374-38502393 | None:intergenic | 35.0% | |
| !!! | ATCTACTTTTTGCTCTTACG+TGG | - | chr4_3:38502458-38502477 | Msa0640310:intron | 35.0% |
| !!! | TCTACTTTTTGCTCTTACGT+GGG | - | chr4_3:38502459-38502478 | Msa0640310:intron | 35.0% |
| ATTCCTGATATTGGTAAGCT+TGG | - | chr4_3:38502519-38502538 | Msa0640310:intron | 35.0% | |
| ATACCAAGCTTACCAATATC+AGG | + | chr4_3:38502525-38502544 | None:intergenic | 35.0% | |
| AACGAGAACAAGCAGAAATA+AGG | + | chr4_3:38502799-38502818 | None:intergenic | 35.0% | |
| GGTTCAAAGTCACTTGAAAA+AGG | - | chr4_3:38502863-38502882 | Msa0640310:intron | 35.0% | |
| TATAACTTCAGAAGGAAGCA+AGG | + | chr4_3:38503060-38503079 | None:intergenic | 35.0% | |
| ATGTCAGCTATAACTTCAGA+AGG | + | chr4_3:38503068-38503087 | None:intergenic | 35.0% | |
| GGAACATTAGGAAAGAGAAA+AGG | + | chr4_3:38503157-38503176 | None:intergenic | 35.0% | |
| ACATTGGCAACAGAAATGAA+AGG | + | chr4_3:38503270-38503289 | None:intergenic | 35.0% | |
| TGAGAGAGACAAACTTTGAA+AGG | - | chr4_3:38503353-38503372 | Msa0640310:intron | 35.0% | |
| ! | GAGAGAGACAAACTTTGAAA+GGG | - | chr4_3:38503354-38503373 | Msa0640310:intron | 35.0% |
| ! | AGAGAGACAAACTTTGAAAG+GGG | - | chr4_3:38503355-38503374 | Msa0640310:intron | 35.0% |
| ! | TAACACGAGGCATTAATTCA+TGG | + | chr4_3:38503515-38503534 | None:intergenic | 35.0% |
| CAATTGAACGTAATAACACG+AGG | + | chr4_3:38503528-38503547 | None:intergenic | 35.0% | |
| GTCGATGGTATTATGTTCAT+TGG | - | chr4_3:38503639-38503658 | Msa0640310:intron | 35.0% | |
| !! | ACTTATTTGCTATGGGATGA+TGG | - | chr4_3:38503697-38503716 | Msa0640310:CDS | 35.0% |
| !! | CTTATTTGCTATGGGATGAT+GGG | - | chr4_3:38503698-38503717 | Msa0640310:CDS | 35.0% |
| ! | TTTGATACTAGGACTTGTTC+AGG | - | chr4_3:38503761-38503780 | Msa0640310:intron | 35.0% |
| ! | TTGATACTAGGACTTGTTCA+GGG | - | chr4_3:38503762-38503781 | Msa0640310:intron | 35.0% |
| AGATGAGACATGTCAAAACA+TGG | - | chr4_3:38503846-38503865 | Msa0640310:CDS | 35.0% | |
| ! | CAGCAAGGATTATAATGGAA+TGG | + | chr4_3:38503999-38504018 | None:intergenic | 35.0% |
| ATGAATGTAATATCTCCGTC+AGG | - | chr4_3:38504039-38504058 | Msa0640310:intron | 35.0% | |
| TGAATGTAATATCTCCGTCA+GGG | - | chr4_3:38504040-38504059 | Msa0640310:intron | 35.0% | |
| GTATAAACATTAGCAACTCC+TGG | - | chr4_3:38504123-38504142 | Msa0640310:intron | 35.0% | |
| !! | TGGTTCTAGAAATACTCTTG+AGG | - | chr4_3:38504265-38504284 | Msa0640310:intron | 35.0% |
| TAGAAATACTCTTGAGGATC+AGG | - | chr4_3:38504271-38504290 | Msa0640310:intron | 35.0% | |
| ! | TAACCGATAGTTGGGATTTT+CGG | + | chr4_3:38504435-38504454 | None:intergenic | 35.0% |
| GACAAAACTAACCGATAGTT+GGG | + | chr4_3:38504443-38504462 | None:intergenic | 35.0% | |
| AGACAAAACTAACCGATAGT+TGG | + | chr4_3:38504444-38504463 | None:intergenic | 35.0% | |
| AGAAGTCAGTTAGTTAGTTG+GGG | - | chr4_3:38504750-38504769 | Msa0640310:intron | 35.0% | |
| GAGTAGTAACTCTATTGTGA+AGG | - | chr4_3:38504850-38504869 | Msa0640310:intron | 35.0% | |
| GTAGTAACTCTATTGTGAAG+GGG | - | chr4_3:38504852-38504871 | Msa0640310:intron | 35.0% | |
| ATTGTTAGGAACCCAAGAAT+TGG | + | chr4_3:38504948-38504967 | None:intergenic | 35.0% | |
| ATTCTTGGGTTCCTAACAAT+TGG | - | chr4_3:38504948-38504967 | Msa0640310:intron | 35.0% | |
| ! | AATTGGTCCGACCTTTAAAA+TGG | - | chr4_3:38504965-38504984 | Msa0640310:intron | 35.0% |
| !! | ATTGGTCCGACCTTTAAAAT+GGG | - | chr4_3:38504966-38504985 | Msa0640310:intron | 35.0% |
| ! | AGTAATTTGTGGAGCCTTTA+TGG | + | chr4_3:38505068-38505087 | None:intergenic | 35.0% |
| !!! | CTCGTTTTTTGTTAGGGTTT+TGG | + | chr4_3:38505118-38505137 | None:intergenic | 35.0% |
| AAATCAAGTCATTCTGCCTA+AGG | - | chr4_3:38505275-38505294 | Msa0640310:intron | 35.0% | |
| ! | CAATTTTTCCTCTCTGAACA+AGG | + | chr4_3:38505481-38505500 | None:intergenic | 35.0% |
| CTTGTTCAGAGAGGAAAAAT+TGG | - | chr4_3:38505479-38505498 | Msa0640310:intron | 35.0% | |
| TTCAGAGAGGAAAAATTGGA+GGG | - | chr4_3:38505483-38505502 | Msa0640310:intron | 35.0% | |
| GAGGGCAAAATCATCTTATA+AGG | - | chr4_3:38505501-38505520 | Msa0640310:intron | 35.0% | |
| !! | TATATTTTTGAAGGTCTGCC+TGG | - | chr4_3:38505748-38505767 | Msa0640310:intron | 35.0% |
| !! | TTCTAGAATTCAGGAACTTG+AGG | - | chr4_3:38505802-38505821 | Msa0640310:intron | 35.0% |
| TCGAATGCACAATCAGAAAT+TGG | - | chr4_3:38506016-38506035 | Msa0640310:intron | 35.0% | |
| !! | AGCGTTGATATTGTAAGCAA+TGG | - | chr4_3:38506268-38506287 | Msa0640310:intron | 35.0% |
| ! | CATAATTTGGAACAGAACAG+CGG | - | chr4_3:38506322-38506341 | Msa0640310:intron | 35.0% |
| GTTACAACAAGGTAGTAGTT+TGG | - | chr4_3:38506393-38506412 | Msa0640310:intron | 35.0% | |
| ACCTTTGCTAAGCAAAACAT+TGG | - | chr4_3:38506452-38506471 | Msa0640310:intron | 35.0% | |
| CCTTTGCTAAGCAAAACATT+GGG | - | chr4_3:38506453-38506472 | Msa0640310:intron | 35.0% | |
| AAATGTCTTTCATCTGTGTG+CGG | - | chr4_3:38506490-38506509 | Msa0640310:intron | 35.0% | |
| TAATGTAGATTTGGCTGTTG+AGG | - | chr4_3:38506574-38506593 | Msa0640310:intron | 35.0% | |
| AATGTAGATTTGGCTGTTGA+GGG | - | chr4_3:38506575-38506594 | Msa0640310:intron | 35.0% | |
| ! | TTTTGTAACCTGTATGGTTC+TGG | - | chr4_3:38506604-38506623 | Msa0640310:intron | 35.0% |
| ATATACTCTAGTGCAAAGGT+CGG | + | chr4_3:38506773-38506792 | None:intergenic | 35.0% | |
| TTCCATATACTCTAGTGCAA+AGG | + | chr4_3:38506777-38506796 | None:intergenic | 35.0% | |
| AATTCAATTACCAGACCAAC+TGG | + | chr4_3:38506875-38506894 | None:intergenic | 35.0% | |
| ! | GTTGGTCTGGTAATTGAATT+TGG | - | chr4_3:38506875-38506894 | Msa0640310:intron | 35.0% |
| ! | TTTTCCTTTAATCTTGCCAC+TGG | - | chr4_3:38507022-38507041 | Msa0640310:intron | 35.0% |
| TTTCCTTTAATCTTGCCACT+GGG | - | chr4_3:38507023-38507042 | Msa0640310:intron | 35.0% | |
| TACTTCAATTCCATTGTCAG+GGG | + | chr4_3:38507194-38507213 | None:intergenic | 35.0% | |
| GTTACTTCAATTCCATTGTC+AGG | + | chr4_3:38507196-38507215 | None:intergenic | 35.0% | |
| ! | TGTGTTTTCCTTCAAGATCT+TGG | + | chr4_3:38507225-38507244 | None:intergenic | 35.0% |
| CTTGAAGGAAAACACAAGAA+AGG | - | chr4_3:38507229-38507248 | Msa0640310:intron | 35.0% | |
| TAACCTGTGAATAATTGCTG+CGG | + | chr4_3:38507690-38507709 | None:intergenic | 35.0% | |
| TAAAAACGAGAATGTGGATG+TGG | - | chr4_3:38507809-38507828 | Msa0640310:CDS | 35.0% | |
| TAGTTAAACCATGTCCACAT+GGG | + | chr4_3:38507862-38507881 | None:intergenic | 35.0% | |
| ATTCTGTACTTGTCTTTGCA+AGG | - | chr4_3:38508045-38508064 | Msa0640310:intron | 35.0% | |
| AAAAATGACATAGGCATGTG+AGG | + | chr4_3:38508098-38508117 | None:intergenic | 35.0% | |
| GACTTGACTCTTTGCATTTG+GGG | + | chr4_3:38499962-38499981 | None:intergenic | 40.0% | |
| GGACTTGACTCTTTGCATTT+GGG | + | chr4_3:38499963-38499982 | None:intergenic | 40.0% | |
| TGGACTTGACTCTTTGCATT+TGG | + | chr4_3:38499964-38499983 | None:intergenic | 40.0% | |
| CATGTGCAAAAGAACAGTTC+TGG | + | chr4_3:38500258-38500277 | None:intergenic | 40.0% | |
| ! | CAGAACTGTTCTTTTGCACA+TGG | - | chr4_3:38500256-38500275 | Msa0640310:CDS | 40.0% |
| GTTTGGGTGAGTGAATTAGT+CGG | - | chr4_3:38500391-38500410 | Msa0640310:intron | 40.0% | |
| AAGTTCACCCCAACATTGTA+GGG | + | chr4_3:38500436-38500455 | None:intergenic | 40.0% | |
| TAAGTTCACCCCAACATTGT+AGG | + | chr4_3:38500437-38500456 | None:intergenic | 40.0% | |
| GTTAGTTGAGGGATATTTGG+TGG | - | chr4_3:38500468-38500487 | Msa0640310:CDS | 40.0% | |
| TATTACTTGTACCCCTAAGG+GGG | - | chr4_3:38500508-38500527 | Msa0640310:CDS | 40.0% | |
| AGCCTCTTGTGTAAAAACCA+GGG | - | chr4_3:38500597-38500616 | Msa0640310:intron | 40.0% | |
| !! | TACCCTGGTTTTTACACAAG+AGG | + | chr4_3:38500602-38500621 | None:intergenic | 40.0% |
| TATTGTACGCAACTTTACCC+TGG | + | chr4_3:38500617-38500636 | None:intergenic | 40.0% | |
| CTAATAAAAAAAGGGCCTCC+AGG | + | chr4_3:38500694-38500713 | None:intergenic | 40.0% | |
| TATATCTCGGTTCTTGAACC+TGG | - | chr4_3:38501186-38501205 | Msa0640310:intron | 40.0% | |
| GTACAAACACAGACAAACAC+AGG | + | chr4_3:38501360-38501379 | None:intergenic | 40.0% | |
| ! | ACTTTGACTTCTACACAAGC+TGG | - | chr4_3:38501378-38501397 | Msa0640310:intron | 40.0% |
| TCACAGAATCAATGGACGTA+TGG | + | chr4_3:38501697-38501716 | None:intergenic | 40.0% | |
| !! | ACGTCCATTGATTCTGTGAA+AGG | - | chr4_3:38501698-38501717 | Msa0640310:intron | 40.0% |
| ATGCAATAACACATGGCATG+TGG | - | chr4_3:38501739-38501758 | Msa0640310:CDS | 40.0% | |
| TGCAATAACACATGGCATGT+GGG | - | chr4_3:38501740-38501759 | Msa0640310:CDS | 40.0% | |
| CAACAGTCTGCAAGATAAAG+TGG | + | chr4_3:38501811-38501830 | None:intergenic | 40.0% | |
| AAATGAAATATCCGCACTGC+TGG | + | chr4_3:38501839-38501858 | None:intergenic | 40.0% | |
| TCGCAATGAATTCTGCTGAT+TGG | - | chr4_3:38501873-38501892 | Msa0640310:CDS | 40.0% | |
| GTTTATCTTAGAGGCAATGC+TGG | - | chr4_3:38501895-38501914 | Msa0640310:CDS | 40.0% | |
| ACAGAACAAGTGTTTCCTGA+AGG | - | chr4_3:38501975-38501994 | Msa0640310:intron | 40.0% | |
| AAGCCTGATTAAGATCCTTC+AGG | + | chr4_3:38501993-38502012 | None:intergenic | 40.0% | |
| GGATCTTAATCAGGCTTACA+TGG | - | chr4_3:38501996-38502015 | Msa0640310:intron | 40.0% | |
| AAAACGAAGTAACAGCCCAA+AGG | + | chr4_3:38502130-38502149 | None:intergenic | 40.0% | |
| !! | TTTGGGCTGTTACTTCGTTT+TGG | - | chr4_3:38502129-38502148 | Msa0640310:intron | 40.0% |
| !! | TCCTTTTGGCTGTTACTTCA+TGG | - | chr4_3:38502171-38502190 | Msa0640310:intron | 40.0% |
| CTACATGGACATAGGCAAAA+TGG | - | chr4_3:38502194-38502213 | Msa0640310:intron | 40.0% | |
| TGGATATGACTTTCCATTCG+AGG | - | chr4_3:38502292-38502311 | Msa0640310:CDS | 40.0% | |
| GCAGGAAAGAGAGACTATTT+AGG | - | chr4_3:38502664-38502683 | Msa0640310:intron | 40.0% | |
| TGAGGGATAAACTTGACAGA+AGG | - | chr4_3:38502698-38502717 | Msa0640310:intron | 40.0% | |
| ATCACCTCCAAGATATTCAC+CGG | - | chr4_3:38502726-38502745 | Msa0640310:intron | 40.0% | |
| AGTTTAGTCATACCATGGAG+AGG | - | chr4_3:38502838-38502857 | Msa0640310:intron | 40.0% | |
| ACGACAAGTTAGGGTGAAAT+AGG | + | chr4_3:38503013-38503032 | None:intergenic | 40.0% | |
| ! | TATTTCACCCTAACTTGTCG+TGG | - | chr4_3:38503012-38503031 | Msa0640310:intron | 40.0% |
| TTGCAGAATATAGTCCACTG+AGG | - | chr4_3:38503188-38503207 | Msa0640310:intron | 40.0% | |
| ! | GAGAGACAAACTTTGAAAGG+GGG | - | chr4_3:38503356-38503375 | Msa0640310:intron | 40.0% |
| ! | AGAGACAAACTTTGAAAGGG+GGG | - | chr4_3:38503357-38503376 | Msa0640310:intron | 40.0% |
| TAGTTACGGGGTTTGATACT+AGG | - | chr4_3:38503750-38503769 | Msa0640310:intron | 40.0% | |
| GCTGTCAGCAAGGATTATAA+TGG | + | chr4_3:38504004-38504023 | None:intergenic | 40.0% | |
| ! | AATTTTGCATGCTGTCAGCA+AGG | + | chr4_3:38504014-38504033 | None:intergenic | 40.0% |
| ! | AAATTAAAGGTTGGCCCTGA+CGG | + | chr4_3:38504057-38504076 | None:intergenic | 40.0% |
| CAGAAGACATAGGAGAAAAC+AGG | - | chr4_3:38504154-38504173 | Msa0640310:intron | 40.0% | |
| AGGAGAAAACAGGATATCAG+TGG | - | chr4_3:38504164-38504183 | Msa0640310:intron | 40.0% | |
| GAACCGAAAATCCCAACTAT+CGG | - | chr4_3:38504429-38504448 | Msa0640310:intron | 40.0% | |
| TAAAGGTCGGACCAATTGTT+AGG | + | chr4_3:38504962-38504981 | None:intergenic | 40.0% | |
| !! | CTTTAAAATGGGCAGTGGAT+GGG | - | chr4_3:38504977-38504996 | Msa0640310:intron | 40.0% |
| ! | TTCCTAACTGACTGATTTCC+AGG | - | chr4_3:38505000-38505019 | Msa0640310:intron | 40.0% |
| AACCTGGAAATCAGTCAGTT+AGG | + | chr4_3:38505005-38505024 | None:intergenic | 40.0% | |
| TAGGCTTTCATAGTTGCCTT+AGG | + | chr4_3:38505294-38505313 | None:intergenic | 40.0% | |
| GTTCAGAGAGGAAAAATTGG+AGG | - | chr4_3:38505482-38505501 | Msa0640310:intron | 40.0% | |
| CTCAGTTAAGCAAAGAGGAT+GGG | - | chr4_3:38505825-38505844 | Msa0640310:intron | 40.0% | |
| TCAGTTAAGCAAAGAGGATG+GGG | - | chr4_3:38505826-38505845 | Msa0640310:intron | 40.0% | |
| ! | AAGAGGATGGGGAGTATAAA+AGG | - | chr4_3:38505837-38505856 | Msa0640310:intron | 40.0% |
| ! | ATGGGGAGTATAAAAGGTAC+TGG | - | chr4_3:38505843-38505862 | Msa0640310:intron | 40.0% |
| AGTTGCAAGATGAACTGAAG+AGG | - | chr4_3:38506039-38506058 | Msa0640310:intron | 40.0% | |
| TTGTTCTGTATGCAGATCAC+AGG | - | chr4_3:38506174-38506193 | Msa0640310:intron | 40.0% | |
| !! | TTCTAGAATTGGTGCTGATG+AGG | - | chr4_3:38506237-38506256 | Msa0640310:intron | 40.0% |
| GTAAGCAATGGTGAGAATAC+TGG | - | chr4_3:38506280-38506299 | Msa0640310:intron | 40.0% | |
| TCTGTGGAAGAGTTACAACA+AGG | - | chr4_3:38506382-38506401 | Msa0640310:intron | 40.0% | |
| ! | CCCAATGTTTTGCTTAGCAA+AGG | + | chr4_3:38506456-38506475 | None:intergenic | 40.0% |
| AATGTCTTTCATCTGTGTGC+GGG | - | chr4_3:38506491-38506510 | Msa0640310:intron | 40.0% | |
| TATACTCTAGTGCAAAGGTC+GGG | + | chr4_3:38506772-38506791 | None:intergenic | 40.0% | |
| GACCTTTGCACTAGAGTATA+TGG | - | chr4_3:38506772-38506791 | Msa0640310:intron | 40.0% | |
| !! | GATCGTCGTTTTAAACCAGT+TGG | - | chr4_3:38506857-38506876 | Msa0640310:intron | 40.0% |
| !! | TCGTTTTAAACCAGTTGGTC+TGG | - | chr4_3:38506862-38506881 | Msa0640310:intron | 40.0% |
| TTCAATAACCATATGCCCAG+TGG | + | chr4_3:38507041-38507060 | None:intergenic | 40.0% | |
| TCGATTGAAACAGCAAGAAG+TGG | - | chr4_3:38507112-38507131 | Msa0640310:intron | 40.0% | |
| CGATTGAAACAGCAAGAAGT+GGG | - | chr4_3:38507113-38507132 | Msa0640310:intron | 40.0% | |
| GATTGACAAGAGTTGTGAAG+AGG | - | chr4_3:38507168-38507187 | Msa0640310:intron | 40.0% | |
| TGTTGCATTCTTTGTGATGC+CGG | - | chr4_3:38507360-38507379 | Msa0640310:intron | 40.0% | |
| AACCATGAATATACAGCCGA+AGG | - | chr4_3:38507489-38507508 | Msa0640310:intron | 40.0% | |
| TTCCTTCGGCTGTATATTCA+TGG | + | chr4_3:38507494-38507513 | None:intergenic | 40.0% | |
| ACTTCAATCCTGGATTCCTT+CGG | + | chr4_3:38507508-38507527 | None:intergenic | 40.0% | |
| TGAAATGGCATTACAGGTGA+AGG | - | chr4_3:38507630-38507649 | Msa0640310:intron | 40.0% | |
| GAAATGGCATTACAGGTGAA+GGG | - | chr4_3:38507631-38507650 | Msa0640310:intron | 40.0% | |
| AACCTGTGAATAATTGCTGC+GGG | + | chr4_3:38507689-38507708 | None:intergenic | 40.0% | |
| ! | CACAGGTTAGTTCTTCTTTG+AGG | - | chr4_3:38507701-38507720 | Msa0640310:intron | 40.0% |
| TGAGGGTAAAAACGAGAATG+TGG | - | chr4_3:38507803-38507822 | Msa0640310:CDS | 40.0% | |
| CTAGTTAAACCATGTCCACA+TGG | + | chr4_3:38507863-38507882 | None:intergenic | 40.0% | |
| !!! | TTTTTGTTTTGGGGGTTCAG+AGG | - | chr4_3:38507900-38507919 | Msa0640310:CDS | 40.0% |
| CTTGTCTAGTTGTCTTTGCA+TGG | - | chr4_3:38508010-38508029 | Msa0640310:intron | 40.0% | |
| ! | TTGCATTTGGGGTAGACAAG+TGG | + | chr4_3:38499951-38499970 | None:intergenic | 45.0% |
| ACAATACACTTGGCGCAACT+TGG | - | chr4_3:38500132-38500151 | Msa0640310:three_prime_UTR | 45.0% | |
| TTGAGAGAGCCCTACAATGT+TGG | - | chr4_3:38500424-38500443 | Msa0640310:CDS | 45.0% | |
| TGAGAGAGCCCTACAATGTT+GGG | - | chr4_3:38500425-38500444 | Msa0640310:CDS | 45.0% | |
| CAATGTTGGGGTGAACTTAG+TGG | - | chr4_3:38500438-38500457 | Msa0640310:CDS | 45.0% | |
| ! | GAGTTCGTGGTTTCAAGTCT+TGG | - | chr4_3:38500570-38500589 | Msa0640310:CDS | 45.0% |
| CAGCCTCTTGTGTAAAAACC+AGG | - | chr4_3:38500596-38500615 | Msa0640310:intron | 45.0% | |
| GTTGCGTACAATACCCCAAA+TGG | - | chr4_3:38500624-38500643 | Msa0640310:intron | 45.0% | |
| CGTACAATACCCCAAATGGT+GGG | - | chr4_3:38500628-38500647 | Msa0640310:intron | 45.0% | |
| AAAGAGCCTCACTAGTGCTT+GGG | + | chr4_3:38500767-38500786 | None:intergenic | 45.0% | |
| TTGTGGATCGCAGAGAATAG+CGG | + | chr4_3:38501073-38501092 | None:intergenic | 45.0% | |
| CTATTCTCTGCGATCCACAA+CGG | - | chr4_3:38501073-38501092 | Msa0640310:intron | 45.0% | |
| TGTCTTCTTGCAGACGTAGA+TGG | - | chr4_3:38501295-38501314 | Msa0640310:intron | 45.0% | |
| ACAGACAAACACAGGACTAG+TGG | + | chr4_3:38501352-38501371 | None:intergenic | 45.0% | |
| !! | AGTGTGCTGACTAAACAAGC+TGG | + | chr4_3:38501604-38501623 | None:intergenic | 45.0% |
| CAGGCTTACATGGATGTATC+TGG | - | chr4_3:38502006-38502025 | Msa0640310:intron | 45.0% | |
| GCCATGAAGTAACAGCCAAA+AGG | + | chr4_3:38502175-38502194 | None:intergenic | 45.0% | |
| ! | GCTGTTACTTCATGGCTACA+TGG | - | chr4_3:38502179-38502198 | Msa0640310:intron | 45.0% |
| CTTCATGGCTACATGGACAT+AGG | - | chr4_3:38502186-38502205 | Msa0640310:intron | 45.0% | |
| CAAATCTCATAGCCTTCGGA+TGG | - | chr4_3:38502248-38502267 | Msa0640310:intron | 45.0% | |
| ! | ACTTTTTGCTCTTACGTGGG+AGG | - | chr4_3:38502462-38502481 | Msa0640310:intron | 45.0% |
| ATCTTGTGTCTAACCGCGAA+TGG | + | chr4_3:38502776-38502795 | None:intergenic | 45.0% | |
| TAGTCATACCATGGAGAGGA+AGG | - | chr4_3:38502842-38502861 | Msa0640310:intron | 45.0% | |
| ACTTTGAACCTTCCTCTCCA+TGG | + | chr4_3:38502853-38502872 | None:intergenic | 45.0% | |
| CCATGATCCACGACAAGTTA+GGG | + | chr4_3:38503022-38503041 | None:intergenic | 45.0% | |
| ACCATGATCCACGACAAGTT+AGG | + | chr4_3:38503023-38503042 | None:intergenic | 45.0% | |
| TGAGGTCTCCAGAGAAAAGA+AGG | - | chr4_3:38503206-38503225 | Msa0640310:intron | 45.0% | |
| GGAGGAGATTAGAGAAGGAT+GGG | - | chr4_3:38503378-38503397 | Msa0640310:intron | 45.0% | |
| GAGGAGATTAGAGAAGGATG+GGG | - | chr4_3:38503379-38503398 | Msa0640310:intron | 45.0% | |
| AGGAGATTAGAGAAGGATGG+GGG | - | chr4_3:38503380-38503399 | Msa0640310:intron | 45.0% | |
| TATTGTGAAGGGGAAACCCT+TGG | - | chr4_3:38504862-38504881 | Msa0640310:intron | 45.0% | |
| GAGAGAAATCTCTCCTCCAA+GGG | + | chr4_3:38504881-38504900 | None:intergenic | 45.0% | |
| !! | CCACTGCCCATTTTAAAGGT+CGG | + | chr4_3:38504975-38504994 | None:intergenic | 45.0% |
| ! | CCATCCACTGCCCATTTTAA+AGG | + | chr4_3:38504979-38504998 | None:intergenic | 45.0% |
| !! | CCTTTAAAATGGGCAGTGGA+TGG | - | chr4_3:38504976-38504995 | Msa0640310:intron | 45.0% |
| AATTCACCCGGAGTCCATAA+AGG | - | chr4_3:38505051-38505070 | Msa0640310:intron | 45.0% | |
| GTTGGAACTAGAGATGTCTC+TGG | + | chr4_3:38505172-38505191 | None:intergenic | 45.0% | |
| TCTGCCAAGCTGAATCTACA+AGG | - | chr4_3:38505383-38505402 | Msa0640310:CDS | 45.0% | |
| TGTGCCTTGTAGATTCAGCT+TGG | + | chr4_3:38505390-38505409 | None:intergenic | 45.0% | |
| AGTTGCATCCTTGTTCAGAG+AGG | - | chr4_3:38505470-38505489 | Msa0640310:intron | 45.0% | |
| CTTCTTGAACACTCTCATCC+AGG | + | chr4_3:38505769-38505788 | None:intergenic | 45.0% | |
| !! | GGATGAGAGTGTTCAAGAAG+TGG | - | chr4_3:38505769-38505788 | Msa0640310:intron | 45.0% |
| TGAGGCTCAGTTAAGCAAAG+AGG | - | chr4_3:38505820-38505839 | Msa0640310:intron | 45.0% | |
| GCTCAGTTAAGCAAAGAGGA+TGG | - | chr4_3:38505824-38505843 | Msa0640310:intron | 45.0% | |
| !! | GATCTCCGAACCTTTGAAGT+CGG | + | chr4_3:38506201-38506220 | None:intergenic | 45.0% |
| CGGATCTCCTTGCAGAAAAA+GGG | - | chr4_3:38506342-38506361 | Msa0640310:intron | 45.0% | |
| CTAGAAGTCCAGAACCATAC+AGG | + | chr4_3:38506615-38506634 | None:intergenic | 45.0% | |
| ATGCCCAGTGGCAAGATTAA+AGG | + | chr4_3:38507029-38507048 | None:intergenic | 45.0% | |
| TAATCTTGCCACTGGGCATA+TGG | - | chr4_3:38507030-38507049 | Msa0640310:intron | 45.0% | |
| AAACAGCAAGAAGTGGGAAG+CGG | - | chr4_3:38507119-38507138 | Msa0640310:intron | 45.0% | |
| ACTAGGCACCAAGATCTTGA+AGG | - | chr4_3:38507214-38507233 | Msa0640310:intron | 45.0% | |
| ATATACAGCCGAAGGAATCC+AGG | - | chr4_3:38507497-38507516 | Msa0640310:intron | 45.0% | |
| ACCTGTGAATAATTGCTGCG+GGG | + | chr4_3:38507688-38507707 | None:intergenic | 45.0% | |
| AACGAGAATGTGGATGTGGA+TGG | - | chr4_3:38507813-38507832 | Msa0640310:CDS | 45.0% | |
| ! | TGTGGATGGTCTTGATGAAG+AGG | - | chr4_3:38507827-38507846 | Msa0640310:CDS | 45.0% |
| !!! | CTTTTTTTTTTTTTTTTTAA+GGG | - | chr4_3:38502621-38502640 | Msa0640310:intron | 5.0% |
| AACACTGGTAGAGCTACTCG+TGG | + | chr4_3:38499984-38500003 | None:intergenic | 50.0% | |
| GGAGAAGTAACGCTGAACAC+TGG | + | chr4_3:38499999-38500018 | None:intergenic | 50.0% | |
| GAGAGAGCCCTACAATGTTG+GGG | - | chr4_3:38500426-38500445 | Msa0640310:CDS | 50.0% | |
| GTCATGTGACTGAGAGTTCG+TGG | - | chr4_3:38500557-38500576 | Msa0640310:CDS | 50.0% | |
| GCGTACAATACCCCAAATGG+TGG | - | chr4_3:38500627-38500646 | Msa0640310:intron | 50.0% | |
| ATGAAGGGGTCCCACCATTT+GGG | + | chr4_3:38500641-38500660 | None:intergenic | 50.0% | |
| ACATACGCAGGGTCCATGAA+GGG | + | chr4_3:38500656-38500675 | None:intergenic | 50.0% | |
| TTCATGGACCCTGCGTATGT+GGG | - | chr4_3:38500656-38500675 | Msa0640310:intron | 50.0% | |
| CTAAAGCTCCCACATACGCA+GGG | + | chr4_3:38500667-38500686 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCACATACGC+AGG | + | chr4_3:38500668-38500687 | None:intergenic | 50.0% | |
| ! | TGTGGGAGCTTTAGTACACC+TGG | - | chr4_3:38500673-38500692 | Msa0640310:intron | 50.0% |
| TGTACTCCTAAGGGCCTGTT+TGG | - | chr4_3:38500715-38500734 | Msa0640310:intron | 50.0% | |
| GTCAATCCAAACAGGCCCTT+AGG | + | chr4_3:38500724-38500743 | None:intergenic | 50.0% | |
| CAAAGAGCCTCACTAGTGCT+TGG | + | chr4_3:38500768-38500787 | None:intergenic | 50.0% | |
| CTGTTGCATTTCCAGCAGTG+CGG | - | chr4_3:38501825-38501844 | Msa0640310:CDS | 50.0% | |
| TCTCGAGCCGGTGAATATCT+TGG | + | chr4_3:38502736-38502755 | None:intergenic | 50.0% | |
| !! | AAGATATTCACCGGCTCGAG+AGG | - | chr4_3:38502735-38502754 | Msa0640310:intron | 50.0% |
| ! | CCCTAACTTGTCGTGGATCA+TGG | - | chr4_3:38503019-38503038 | Msa0640310:intron | 50.0% |
| !! | CTTTTCTCTGGAGACCTCAG+TGG | + | chr4_3:38503205-38503224 | None:intergenic | 50.0% |
| ! | GACAAACTTTGAAAGGGGGG+AGG | - | chr4_3:38503360-38503379 | Msa0640310:intron | 50.0% |
| GGGAGGAGATTAGAGAAGGA+TGG | - | chr4_3:38503377-38503396 | Msa0640310:intron | 50.0% | |
| GGAGATTAGAGAAGGATGGG+GGG | - | chr4_3:38503381-38503400 | Msa0640310:intron | 50.0% | |
| ATGTCTTCTGTCACTGCACC+AGG | + | chr4_3:38504144-38504163 | None:intergenic | 50.0% | |
| GGTGCAGTGACAGAAGACAT+AGG | - | chr4_3:38504144-38504163 | Msa0640310:intron | 50.0% | |
| GGAGAGAAATCTCTCCTCCA+AGG | + | chr4_3:38504882-38504901 | None:intergenic | 50.0% | |
| !! | CCGACCTTTAAAATGGGCAG+TGG | - | chr4_3:38504972-38504991 | Msa0640310:intron | 50.0% |
| TGTGGAGCCTTTATGGACTC+CGG | + | chr4_3:38505061-38505080 | None:intergenic | 50.0% | |
| GATCACAGGTCCGACTTCAA+AGG | - | chr4_3:38506188-38506207 | Msa0640310:intron | 50.0% | |
| CAGGTCCGACTTCAAAGGTT+CGG | - | chr4_3:38506193-38506212 | Msa0640310:intron | 50.0% | |
| GCGGATCTCCTTGCAGAAAA+AGG | - | chr4_3:38506341-38506360 | Msa0640310:intron | 50.0% | |
| ! | GCATGCACCCTTTTTCTGCA+AGG | + | chr4_3:38506352-38506371 | None:intergenic | 50.0% |
| GCATGCAGAACGAGATTCTG+TGG | - | chr4_3:38506366-38506385 | Msa0640310:intron | 50.0% | |
| TCTTTCATCTGTGTGCGGGA+TGG | - | chr4_3:38506495-38506514 | Msa0640310:intron | 50.0% | |
| AATGCCCTGCATGCACGTTT+GGG | + | chr4_3:38507093-38507112 | None:intergenic | 50.0% | |
| TGCTGCGGGGAATCAAATCT+GGG | + | chr4_3:38507675-38507694 | None:intergenic | 50.0% | |
| TTGCTGCGGGGAATCAAATC+TGG | + | chr4_3:38507676-38507695 | None:intergenic | 50.0% | |
| TCCCCGCAGCAATTATTCAC+AGG | - | chr4_3:38507684-38507703 | Msa0640310:intron | 50.0% | |
| TGTGCCAAAGCTCCCCCTTA+GGG | + | chr4_3:38500523-38500542 | None:intergenic | 55.0% | |
| TTGTGCCAAAGCTCCCCCTT+AGG | + | chr4_3:38500524-38500543 | None:intergenic | 55.0% | |
| ! | AAGGGGGAGCTTTGGCACAA+CGG | - | chr4_3:38500524-38500543 | Msa0640310:CDS | 55.0% |
| TGAAGGGGTCCCACCATTTG+GGG | + | chr4_3:38500640-38500659 | None:intergenic | 55.0% | |
| CATGAAGGGGTCCCACCATT+TGG | + | chr4_3:38500642-38500661 | None:intergenic | 55.0% | |
| ! | CAAATGGTGGGACCCCTTCA+TGG | - | chr4_3:38500640-38500659 | Msa0640310:intron | 55.0% |
| CATACGCAGGGTCCATGAAG+GGG | + | chr4_3:38500655-38500674 | None:intergenic | 55.0% | |
| CACATACGCAGGGTCCATGA+AGG | + | chr4_3:38500657-38500676 | None:intergenic | 55.0% | |
| CTTCATGGACCCTGCGTATG+TGG | - | chr4_3:38500655-38500674 | Msa0640310:intron | 55.0% | |
| ! | GGGAGCTTTAGTACACCTGG+AGG | - | chr4_3:38500676-38500695 | Msa0640310:intron | 55.0% |
| TACTGGCCCAAGCACTAGTG+AGG | - | chr4_3:38500758-38500777 | Msa0640310:intron | 55.0% | |
| CGAGCCGGTGAATATCTTGG+AGG | + | chr4_3:38502733-38502752 | None:intergenic | 55.0% | |
| AGGGGGGAGGAGATTAGAGA+AGG | - | chr4_3:38503373-38503392 | Msa0640310:intron | 55.0% | |
| TGGCACGGACACATCAACAC+GGG | + | chr4_3:38503573-38503592 | None:intergenic | 55.0% | |
| CTGGCACGGACACATCAACA+CGG | + | chr4_3:38503574-38503593 | None:intergenic | 55.0% | |
| TGTGAAGGGGAAACCCTTGG+AGG | - | chr4_3:38504865-38504884 | Msa0640310:intron | 55.0% | |
| GTGGAGCCTTTATGGACTCC+GGG | + | chr4_3:38505060-38505079 | None:intergenic | 55.0% | |
| GTCTCCCAAACGTGCATGCA+GGG | - | chr4_3:38507086-38507105 | Msa0640310:intron | 55.0% | |
| GAATGCCCTGCATGCACGTT+TGG | + | chr4_3:38507094-38507113 | None:intergenic | 55.0% | |
| TGTGAAGAGGCCCCTGACAA+TGG | - | chr4_3:38507181-38507200 | Msa0640310:intron | 55.0% | |
| GGTTGACGGCACTTCAATCC+TGG | + | chr4_3:38507518-38507537 | None:intergenic | 55.0% | |
| !! | TGAAGTGCCGTCAACCAGCA+TGG | - | chr4_3:38507522-38507541 | Msa0640310:intron | 55.0% |
| ! | TGAGCTGCCATGCTGGTTGA+CGG | + | chr4_3:38507532-38507551 | None:intergenic | 55.0% |
| GACAACATGAGCTGCCATGC+TGG | + | chr4_3:38507539-38507558 | None:intergenic | 55.0% | |
| GGCAGCTCATGTTGTCGATG+AGG | - | chr4_3:38507543-38507562 | Msa0640310:intron | 55.0% | |
| GCTGCGGGGAATCAAATCTG+GGG | + | chr4_3:38507674-38507693 | None:intergenic | 55.0% | |
| GTACCCCTAAGGGGGAGCTT+TGG | - | chr4_3:38500516-38500535 | Msa0640310:CDS | 60.0% | |
| GTGCCAAAGCTCCCCCTTAG+GGG | + | chr4_3:38500522-38500541 | None:intergenic | 60.0% | |
| AGAGGTCGGCAGACCATTCG+CGG | - | chr4_3:38502760-38502779 | Msa0640310:intron | 60.0% | |
| AAGGACACCGGACACGACAC+TGG | + | chr4_3:38503593-38503612 | None:intergenic | 60.0% | |
| CGTCTCCCAAACGTGCATGC+AGG | - | chr4_3:38507085-38507104 | Msa0640310:intron | 60.0% | |
| CAGCAGAGACAGAGCTGCCA+TGG | + | chr4_3:38507310-38507329 | None:intergenic | 60.0% | |
| CATGGCAGCTCTGTCTCTGC+TGG | - | chr4_3:38507308-38507327 | Msa0640310:intron | 60.0% | |
| AGCAGCAGCCCATGTGGACA+TGG | - | chr4_3:38507851-38507870 | Msa0640310:CDS | 60.0% | |
| !! | TCACCGGCTCGAGAGGCAAG+AGG | - | chr4_3:38502742-38502761 | Msa0640310:intron | 65.0% |
| CGACCTCTTGCCTCTCGAGC+CGG | + | chr4_3:38502748-38502767 | None:intergenic | 65.0% | |
| CGGCTCGAGAGGCAAGAGGT+CGG | - | chr4_3:38502746-38502765 | Msa0640310:intron | 65.0% | |
| GTCCGTGCCAGTGTCGTGTC+CGG | - | chr4_3:38503583-38503602 | Msa0640310:intron | 65.0% | |
| CACCGGACACGACACTGGCA+CGG | + | chr4_3:38503588-38503607 | None:intergenic | 65.0% | |
| AGAGGCAGCAGCAGCCCATG+TGG | - | chr4_3:38507845-38507864 | Msa0640310:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 38499931 | 38508186 | 38499931 | ID=Msa0640310;Name=Msa0640310 |
| chr4_3 | mRNA | 38499931 | 38508186 | 38499931 | ID=Msa0640310-mRNA-1;Parent=Msa0640310;Name=Msa0640310-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.83|0.69|0.92|0.83|0.76|13|308|467 |
| chr4_3 | exon | 38499931 | 38500316 | 38499931 | ID=Msa0640310-mRNA-1:exon:8719;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38500412 | 38500612 | 38500412 | ID=Msa0640310-mRNA-1:exon:8718;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38500829 | 38501010 | 38500829 | ID=Msa0640310-mRNA-1:exon:8717;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38501714 | 38501921 | 38501714 | ID=Msa0640310-mRNA-1:exon:8716;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38502104 | 38502128 | 38502104 | ID=Msa0640310-mRNA-1:exon:8715;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38502259 | 38502356 | 38502259 | ID=Msa0640310-mRNA-1:exon:8714;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38503667 | 38503723 | 38503667 | ID=Msa0640310-mRNA-1:exon:8713;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38503825 | 38503966 | 38503825 | ID=Msa0640310-mRNA-1:exon:8712;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38504890 | 38504923 | 38504890 | ID=Msa0640310-mRNA-1:exon:8711;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38505336 | 38505449 | 38505336 | ID=Msa0640310-mRNA-1:exon:8710;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38507801 | 38507987 | 38507801 | ID=Msa0640310-mRNA-1:exon:8709;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38508071 | 38508144 | 38508071 | ID=Msa0640310-mRNA-1:exon:8708;Parent=Msa0640310-mRNA-1 |
| chr4_3 | exon | 38508183 | 38508186 | 38508183 | ID=Msa0640310-mRNA-1:exon:8707;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38508183 | 38508186 | 38508183 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38508071 | 38508144 | 38508071 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38507801 | 38507987 | 38507801 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38505336 | 38505449 | 38505336 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38504890 | 38504923 | 38504890 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38503825 | 38503966 | 38503825 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38503667 | 38503723 | 38503667 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38502259 | 38502356 | 38502259 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38502104 | 38502128 | 38502104 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38501714 | 38501921 | 38501714 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38500829 | 38501010 | 38500829 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38500412 | 38500612 | 38500412 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | CDS | 38500239 | 38500316 | 38500239 | ID=Msa0640310-mRNA-1:cds;Parent=Msa0640310-mRNA-1 |
| chr4_3 | three_prime_UTR | 38499931 | 38500238 | 38499931 | ID=Msa0640310-mRNA-1:three_prime_utr;Parent=Msa0640310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
