Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640760 | XP_024636300.1 | 79.316 | 585 | 80 | 5 | 1 | 562 | 1 | 567 | 0.0 | 833 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640760 | sp|Q9XEC3|WRK42_ARATH | 36.433 | 527 | 243 | 16 | 52 | 539 | 30 | 503 | 6.81e-70 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0640760 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640760 | MtrunA17_Chr4g0025051 | 79.316 | 585 | 80 | 5 | 1 | 562 | 1 | 567 | 0.0 | 833 |
| Msa0640760 | MtrunA17_Chr4g0025061 | 70.588 | 612 | 122 | 10 | 9 | 579 | 17 | 611 | 0.0 | 787 |
| Msa0640760 | MtrunA17_Chr4g0024391 | 71.107 | 488 | 109 | 4 | 124 | 579 | 1 | 488 | 0.0 | 655 |
| Msa0640760 | MtrunA17_Chr2g0322391 | 39.925 | 531 | 230 | 15 | 76 | 577 | 120 | 590 | 5.67e-88 | 284 |
| Msa0640760 | MtrunA17_Chr2g0288871 | 35.294 | 544 | 217 | 19 | 52 | 540 | 67 | 530 | 4.23e-63 | 217 |
| Msa0640760 | MtrunA17_Chr4g0024401 | 74.016 | 127 | 27 | 2 | 1 | 127 | 1 | 121 | 7.95e-54 | 179 |
| Msa0640760 | MtrunA17_Chr3g0099641 | 31.299 | 508 | 227 | 19 | 52 | 539 | 39 | 444 | 1.85e-53 | 189 |
| Msa0640760 | MtrunA17_Chr4g0075201 | 49.774 | 221 | 87 | 5 | 330 | 527 | 245 | 464 | 1.04e-48 | 176 |
| Msa0640760 | MtrunA17_Chr7g0270831 | 42.798 | 243 | 99 | 8 | 337 | 563 | 201 | 419 | 3.54e-40 | 151 |
| Msa0640760 | MtrunA17_Chr2g0302391 | 44.720 | 161 | 70 | 4 | 323 | 464 | 182 | 342 | 1.36e-32 | 130 |
| Msa0640760 | MtrunA17_Chr4g0051181 | 33.582 | 268 | 120 | 8 | 337 | 554 | 228 | 487 | 6.16e-23 | 102 |
| Msa0640760 | MtrunA17_Chr7g0216891 | 41.791 | 134 | 51 | 4 | 306 | 412 | 160 | 293 | 8.56e-23 | 102 |
| Msa0640760 | MtrunA17_Chr5g0419241 | 69.811 | 53 | 16 | 0 | 330 | 382 | 55 | 107 | 1.55e-22 | 92.8 |
| Msa0640760 | MtrunA17_Chr4g0060271 | 51.316 | 76 | 23 | 2 | 337 | 398 | 240 | 315 | 4.06e-18 | 88.2 |
| Msa0640760 | MtrunA17_Chr4g0001361 | 31.757 | 148 | 63 | 5 | 329 | 462 | 139 | 262 | 2.40e-14 | 74.3 |
| Msa0640760 | MtrunA17_Chr7g0218081 | 36.082 | 97 | 47 | 2 | 328 | 410 | 386 | 481 | 4.16e-12 | 68.9 |
| Msa0640760 | MtrunA17_Chr3g0101131 | 33.028 | 109 | 55 | 4 | 325 | 416 | 388 | 495 | 1.10e-11 | 67.8 |
| Msa0640760 | MtrunA17_Chr3g0079691 | 41.250 | 80 | 32 | 3 | 335 | 400 | 478 | 556 | 2.16e-11 | 67.0 |
| Msa0640760 | MtrunA17_Chr2g0333851 | 39.744 | 78 | 31 | 3 | 338 | 399 | 153 | 230 | 2.99e-11 | 65.1 |
| Msa0640760 | MtrunA17_Chr5g0418191 | 35.417 | 96 | 43 | 3 | 323 | 400 | 287 | 381 | 5.97e-11 | 64.7 |
| Msa0640760 | MtrunA17_Chr5g0432161 | 33.333 | 114 | 57 | 4 | 305 | 400 | 370 | 482 | 6.62e-11 | 65.1 |
| Msa0640760 | MtrunA17_Chr1g0150271 | 49.091 | 55 | 27 | 1 | 347 | 400 | 96 | 150 | 7.33e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640760 | AT4G04450.1 | 36.433 | 527 | 243 | 16 | 52 | 539 | 30 | 503 | 6.92e-71 | 237 |
| Msa0640760 | AT4G04450.2 | 38.095 | 462 | 205 | 14 | 106 | 539 | 1 | 409 | 7.39e-66 | 221 |
| Msa0640760 | AT1G62300.1 | 45.850 | 253 | 98 | 7 | 329 | 542 | 289 | 541 | 2.20e-47 | 174 |
| Msa0640760 | AT4G22070.4 | 63.514 | 148 | 39 | 3 | 331 | 463 | 276 | 423 | 3.53e-42 | 159 |
| Msa0640760 | AT4G22070.4 | 36.441 | 118 | 74 | 1 | 89 | 205 | 76 | 193 | 7.40e-13 | 71.6 |
| Msa0640760 | AT4G22070.3 | 63.514 | 148 | 39 | 3 | 331 | 463 | 276 | 423 | 3.53e-42 | 159 |
| Msa0640760 | AT4G22070.3 | 36.441 | 118 | 74 | 1 | 89 | 205 | 76 | 193 | 7.40e-13 | 71.6 |
| Msa0640760 | AT4G22070.2 | 63.514 | 148 | 39 | 3 | 331 | 463 | 276 | 423 | 3.53e-42 | 159 |
| Msa0640760 | AT4G22070.2 | 36.441 | 118 | 74 | 1 | 89 | 205 | 76 | 193 | 7.40e-13 | 71.6 |
| Msa0640760 | AT4G22070.1 | 63.514 | 148 | 39 | 3 | 331 | 463 | 276 | 423 | 3.53e-42 | 159 |
| Msa0640760 | AT4G22070.1 | 36.441 | 118 | 74 | 1 | 89 | 205 | 76 | 193 | 7.40e-13 | 71.6 |
| Msa0640760 | AT4G01720.1 | 38.246 | 285 | 131 | 9 | 286 | 536 | 170 | 443 | 7.76e-31 | 126 |
| Msa0640760 | AT1G68150.1 | 40.789 | 152 | 62 | 4 | 296 | 419 | 165 | 316 | 2.10e-26 | 111 |
| Msa0640760 | AT1G69810.1 | 42.073 | 164 | 74 | 5 | 322 | 470 | 173 | 330 | 3.35e-24 | 105 |
| Msa0640760 | AT1G69810.2 | 42.073 | 164 | 74 | 5 | 322 | 470 | 115 | 272 | 3.81e-24 | 103 |
| Msa0640760 | AT5G15130.2 | 52.222 | 90 | 29 | 2 | 337 | 412 | 170 | 259 | 1.40e-22 | 102 |
| Msa0640760 | AT5G15130.1 | 51.087 | 92 | 31 | 2 | 335 | 412 | 210 | 301 | 1.74e-22 | 102 |
| Msa0640760 | AT1G18860.1 | 40.761 | 184 | 83 | 5 | 335 | 497 | 222 | 400 | 1.95e-21 | 98.6 |
| Msa0640760 | AT1G80840.1 | 37.931 | 87 | 35 | 4 | 332 | 399 | 121 | 207 | 2.12e-11 | 65.9 |
| Msa0640760 | AT2G25000.3 | 28.025 | 157 | 98 | 4 | 245 | 388 | 7 | 161 | 4.87e-11 | 63.9 |
| Msa0640760 | AT2G25000.1 | 25.871 | 201 | 128 | 6 | 217 | 401 | 14 | 209 | 5.11e-11 | 63.9 |
| Msa0640760 | AT2G25000.2 | 35.955 | 89 | 43 | 2 | 327 | 401 | 78 | 166 | 6.55e-11 | 63.2 |
| Msa0640760 | AT2G25000.4 | 35.955 | 89 | 43 | 2 | 327 | 401 | 78 | 166 | 6.55e-11 | 63.2 |
| Msa0640760 | AT1G13960.1 | 37.975 | 79 | 34 | 2 | 334 | 398 | 391 | 468 | 9.77e-11 | 64.7 |
Find 114 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAACTGATCCTTACTTAT+AGG | 0.138037 | 4_3:-39953562 | None:intergenic |
| GATAAAACTGCAGGAAAATT+TGG | 0.153966 | 4_3:-39955022 | None:intergenic |
| GAAGTTTATGATGGAAAATT+TGG | 0.188184 | 4_3:+39953313 | Msa0640760:CDS |
| GTTCTCTTGTCTTCTGAATT+AGG | 0.194946 | 4_3:-39951898 | None:intergenic |
| TTGACTGCCCGAGCAATATT+TGG | 0.223188 | 4_3:-39954980 | None:intergenic |
| AAAGGAGTTTGAAACTGATA+TGG | 0.227217 | 4_3:-39954857 | None:intergenic |
| AACTCAAGGTTGATATTAAC+TGG | 0.247645 | 4_3:-39951413 | None:intergenic |
| GCAGAAGTTTGACGGATTAA+AGG | 0.248811 | 4_3:-39954875 | None:intergenic |
| GCTACTGATAATAATAATAA+TGG | 0.268864 | 4_3:+39955097 | Msa0640760:CDS |
| AATAAGGTTATGGTAGTTAA+AGG | 0.313425 | 4_3:+39953286 | Msa0640760:CDS |
| ACTGGTGCCAAGGAAAATTA+TGG | 0.327217 | 4_3:+39953246 | Msa0640760:CDS |
| TCCCTTTCCTAGTCAATATT+AGG | 0.336762 | 4_3:+39951480 | Msa0640760:CDS |
| TCAAGTGTAATGGTTGGAAA+TGG | 0.343703 | 4_3:-39954800 | None:intergenic |
| CTTGTTTCATTAGATGAGAT+TGG | 0.354120 | 4_3:-39951527 | None:intergenic |
| TTGTGTCCCTTCAAAACTAT+TGG | 0.363975 | 4_3:+39954952 | Msa0640760:CDS |
| AAAAGGAAATTTGTTGATGC+TGG | 0.369100 | 4_3:+39953373 | Msa0640760:CDS |
| GATGCAAGATTGTAAGGTTA+AGG | 0.371759 | 4_3:+39953156 | Msa0640760:CDS |
| GCCATTTCTTTGGCTGCTGC+AGG | 0.373631 | 4_3:-39954641 | None:intergenic |
| CCCATCTTTGTTGTTGCTAC+CGG | 0.375518 | 4_3:-39955158 | None:intergenic |
| TCTTGGAGCGGCTACTAATA+AGG | 0.376028 | 4_3:+39953270 | Msa0640760:CDS |
| TAGTGATACATCATCTTTGT+TGG | 0.382295 | 4_3:+39951634 | Msa0640760:CDS |
| TGCTGGGTTGGCTACTAATA+AGG | 0.384058 | 4_3:+39953390 | Msa0640760:CDS |
| CTGCAACGATAATACGCTTT+AGG | 0.384404 | 4_3:-39953881 | None:intergenic |
| TCTTTGGCTGCTGCAGGTAA+AGG | 0.394516 | 4_3:-39954635 | None:intergenic |
| AAGGTCAAAGAAGTGTTTAA+TGG | 0.396617 | 4_3:+39953409 | Msa0640760:CDS |
| TAACATCCTCATTATTACTT+AGG | 0.406214 | 4_3:-39953627 | None:intergenic |
| TTTCAGATGGCTATTCTTCA+AGG | 0.408471 | 4_3:+39953034 | Msa0640760:intron |
| GGATGTCAATGGAGAAAGTA+TGG | 0.409848 | 4_3:+39953830 | Msa0640760:CDS |
| CAAGTGTAATGGTTGGAAAT+GGG | 0.411437 | 4_3:-39954799 | None:intergenic |
| CCAAGGAAAATTATGGATCT+TGG | 0.414960 | 4_3:+39953253 | Msa0640760:CDS |
| CTTTGGCTGCTGCAGGTAAA+GGG | 0.420375 | 4_3:-39954634 | None:intergenic |
| TAGATGAGATTGGAGAGGTT+TGG | 0.425712 | 4_3:-39951517 | None:intergenic |
| AACTGATATGGGTTCCTTTG+TGG | 0.434502 | 4_3:-39954845 | None:intergenic |
| GCTACTCTTACTTCCATGAT+TGG | 0.436300 | 4_3:+39955046 | Msa0640760:CDS |
| CTATGAATATGATCCTTGTC+GGG | 0.440174 | 4_3:-39951614 | None:intergenic |
| CTACTGATAATAATAATAAT+GGG | 0.441864 | 4_3:+39955098 | Msa0640760:CDS |
| AGGAATTTGCAGAAGTTTGA+CGG | 0.445188 | 4_3:-39954883 | None:intergenic |
| GGGTTCCTTTGTGGAGTAGT+TGG | 0.446220 | 4_3:-39954836 | None:intergenic |
| CAGAAGACAAGAGAACTAAG+AGG | 0.448055 | 4_3:+39951905 | Msa0640760:CDS |
| CGATAATACGCTTTAGGACA+TGG | 0.452989 | 4_3:-39953875 | None:intergenic |
| AAGGAGTTTGAAACTGATAT+GGG | 0.455353 | 4_3:-39954856 | None:intergenic |
| GAAAGTGATGCAAGATTGTA+AGG | 0.455429 | 4_3:+39953150 | Msa0640760:CDS |
| GTAGCAGCAGTAGTGTTGTT+TGG | 0.455433 | 4_3:-39955079 | None:intergenic |
| AGCGGCTACTAATAAGGTTA+TGG | 0.456449 | 4_3:+39953276 | Msa0640760:CDS |
| CCTATAAGTAAGGATCAGTT+AGG | 0.456485 | 4_3:+39953562 | Msa0640760:CDS |
| ACCTGCAGCAGCCAAAGAAA+TGG | 0.461509 | 4_3:+39954640 | Msa0640760:CDS |
| CTACTAGTATTGGTAGTAAC+GGG | 0.463519 | 4_3:-39951844 | None:intergenic |
| AATGAGAAAACCTATAAGTA+AGG | 0.465713 | 4_3:+39953552 | Msa0640760:CDS |
| AGTTGGTGCAAAGGCAATGT+AGG | 0.470135 | 4_3:+39953470 | Msa0640760:CDS |
| ACCGGTAGCAACAACAAAGA+TGG | 0.479103 | 4_3:+39955157 | Msa0640760:CDS |
| GACCTAATATTGACTAGGAA+AGG | 0.479292 | 4_3:-39951482 | None:intergenic |
| AAAGGACAAGAAGTTTATGA+TGG | 0.480807 | 4_3:+39953304 | Msa0640760:CDS |
| ACTATGAATATGATCCTTGT+CGG | 0.485934 | 4_3:-39951615 | None:intergenic |
| TGGTTGCTCAGTCCGAAAAC+AGG | 0.487721 | 4_3:+39953913 | Msa0640760:CDS |
| AATGGGAACAATGTCGCAAA+AGG | 0.491408 | 4_3:+39955115 | Msa0640760:CDS |
| ACATCAACATCAAGCAATGA+TGG | 0.491559 | 4_3:+39954701 | Msa0640760:CDS |
| GGCAGTTCCAAATATTGCTC+GGG | 0.494464 | 4_3:+39954973 | Msa0640760:CDS |
| AGATTGATCACTACTAGTAT+TGG | 0.495472 | 4_3:-39951854 | None:intergenic |
| AGCTGAGAATGGTGGAGTAC+TGG | 0.504825 | 4_3:+39953228 | Msa0640760:CDS |
| CTCTGCCTCTGTCCCCGACA+AGG | 0.510437 | 4_3:+39951601 | Msa0640760:CDS |
| TGGCAGTTCCAAATATTGCT+CGG | 0.513777 | 4_3:+39954972 | Msa0640760:CDS |
| TGGCTGAGTATCACCAATCA+TGG | 0.521571 | 4_3:-39955059 | None:intergenic |
| ATTAACTGGATTTGAATCCA+TGG | 0.524287 | 4_3:-39951399 | None:intergenic |
| GTATTGGTAGTAACGGGATT+GGG | 0.527800 | 4_3:-39951838 | None:intergenic |
| AGTATTGGTAGTAACGGGAT+TGG | 0.529401 | 4_3:-39951839 | None:intergenic |
| GAAATTTGTTGATGCTGGGT+TGG | 0.532637 | 4_3:+39953378 | Msa0640760:CDS |
| ACGGTGGAGAATTAGTGAAA+AGG | 0.533112 | 4_3:+39953356 | Msa0640760:CDS |
| CGAGCTTAAACAAAAGAAAA+CGG | 0.534791 | 4_3:+39953057 | Msa0640760:CDS |
| ACCTAATATTGACTAGGAAA+GGG | 0.537487 | 4_3:-39951481 | None:intergenic |
| TGGGACTAAGTTTCAACTCA+AGG | 0.537922 | 4_3:-39951427 | None:intergenic |
| AAGCTTCGAGGAGGCTTCGA+AGG | 0.539694 | 4_3:+39953597 | Msa0640760:CDS |
| AGGCAGAGACAACTTCTTGA+TGG | 0.540615 | 4_3:-39951586 | None:intergenic |
| AGATTACAATTACATGCGAA+TGG | 0.540869 | 4_3:+39953120 | Msa0640760:CDS |
| TTGAGTATAATCAAGTGTAA+TGG | 0.545850 | 4_3:-39954810 | None:intergenic |
| AAAGGAAATTTGTTGATGCT+GGG | 0.547546 | 4_3:+39953374 | Msa0640760:CDS |
| TGTAAGGTTAAGGAAGTCAA+AGG | 0.554949 | 4_3:+39953166 | Msa0640760:CDS |
| TTATTGTGTTAGATCACTGA+TGG | 0.564668 | 4_3:+39953809 | Msa0640760:intron |
| AATTGAGAATGATGGAGAGT+TGG | 0.565162 | 4_3:+39953453 | Msa0640760:CDS |
| ATGATCCTTGTCGGGGACAG+AGG | 0.567680 | 4_3:-39951606 | None:intergenic |
| AGAGTAGCTGATAAAACTGC+AGG | 0.568439 | 4_3:-39955031 | None:intergenic |
| AAAATTTGGATTAGCAGCAA+TGG | 0.568779 | 4_3:-39955008 | None:intergenic |
| ACTTAGTCCCAACGAAAACA+TGG | 0.569432 | 4_3:+39951439 | Msa0640760:CDS |
| GTCGCAAAAGGTAATAACAA+TGG | 0.570392 | 4_3:+39955127 | Msa0640760:CDS |
| TTGAGAGATCAGAGAAGCTG+AGG | 0.571353 | 4_3:-39954903 | None:intergenic |
| GTATAATCAAGTGTAATGGT+TGG | 0.576480 | 4_3:-39954806 | None:intergenic |
| ACTACTAGTATTGGTAGTAA+CGG | 0.579503 | 4_3:-39951845 | None:intergenic |
| GTTAGTCCTAAGTAATAATG+AGG | 0.580784 | 4_3:+39953621 | Msa0640760:CDS |
| CCGGTAGCAACAACAAAGAT+GGG | 0.583686 | 4_3:+39955158 | Msa0640760:CDS |
| GTTGGTGCAAAGGCAATGTA+GGG | 0.584702 | 4_3:+39953471 | Msa0640760:CDS |
| TACTAATGCTGAGACTGTGA+TGG | 0.589292 | 4_3:+39953507 | Msa0640760:CDS |
| CAATACTTGAAGAACAAGGA+AGG | 0.589537 | 4_3:-39954757 | None:intergenic |
| AATAACAATGGAAATATCAC+CGG | 0.590268 | 4_3:+39955139 | Msa0640760:CDS |
| AAGTGTAATGGTTGGAAATG+GGG | 0.590397 | 4_3:-39954798 | None:intergenic |
| ATGATGGAGAGTTGGTGCAA+AGG | 0.595504 | 4_3:+39953461 | Msa0640760:CDS |
| AGAAGACAAGAGAACTAAGA+GGG | 0.598740 | 4_3:+39951906 | Msa0640760:CDS |
| ATCAGCGTTGAAAAGCTTCG+AGG | 0.603132 | 4_3:+39953585 | Msa0640760:CDS |
| AATACTTGAAGAACAAGGAA+GGG | 0.605302 | 4_3:-39954756 | None:intergenic |
| GATAATACGCTTTAGGACAT+GGG | 0.608155 | 4_3:-39953874 | None:intergenic |
| ATGGTGGAGTACTGGTGCCA+AGG | 0.608936 | 4_3:+39953236 | Msa0640760:CDS |
| TATCGTTGCAGCATGGCCCG+TGG | 0.614367 | 4_3:+39953893 | Msa0640760:CDS |
| TAGCAACAACAAAGATGGGA+AGG | 0.617751 | 4_3:+39955162 | Msa0640760:CDS |
| TTCATTAGATGAGATTGGAG+AGG | 0.619862 | 4_3:-39951522 | None:intergenic |
| TGGAGGACCTAATATTGACT+AGG | 0.620153 | 4_3:-39951487 | None:intergenic |
| AGATCACTGATGGATGTCAA+TGG | 0.621939 | 4_3:+39953819 | Msa0640760:intron |
| ATACTTGAAGAACAAGGAAG+GGG | 0.623529 | 4_3:-39954755 | None:intergenic |
| TGGCTGCTGCAGGTAAAGGG+TGG | 0.624702 | 4_3:-39954631 | None:intergenic |
| GAAAATTATGGATCTTGGAG+CGG | 0.636307 | 4_3:+39953258 | Msa0640760:CDS |
| AGCGTATTATCGTTGCAGCA+TGG | 0.651842 | 4_3:+39953886 | Msa0640760:CDS |
| TGTTAATGTTGAAAATGTTG+AGG | 0.658284 | 4_3:+39953645 | Msa0640760:CDS |
| AGACAAGAGAACTAAGAGGG+AGG | 0.677564 | 4_3:+39951909 | Msa0640760:CDS |
| AATCTCCAACTACTCCACAA+AGG | 0.678231 | 4_3:+39954831 | Msa0640760:CDS |
| TATGAATATGATCCTTGTCG+GGG | 0.678269 | 4_3:-39951613 | None:intergenic |
| AGCGTTGAAAAGCTTCGAGG+AGG | 0.678382 | 4_3:+39953588 | Msa0640760:CDS |
| GTTGCAATACTTGAAGAACA+AGG | 0.694121 | 4_3:-39954761 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGTAGAAAAAAATAAT+GGG | - | chr4_3:39951696-39951715 | None:intergenic | 10.0% |
| !! | TAATAAGTAGAAAAAAATAA+TGG | - | chr4_3:39951697-39951716 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCTTTCTTTTATT+TGG | + | chr4_3:39952553-39952572 | Msa0640760:intron | 10.0% |
| !! | TGAATAAATAAATTCAATTT+AGG | - | chr4_3:39952617-39952636 | None:intergenic | 10.0% |
| !!! | ATGCATATTTAAATTTTTAA+TGG | - | chr4_3:39954384-39954403 | None:intergenic | 10.0% |
| !!! | AATAGAGTTTGATTTTTTTA+AGG | + | chr4_3:39951550-39951569 | Msa0640760:CDS | 15.0% |
| !! | TGTAGTTGAAAAAATTAAAA+TGG | - | chr4_3:39952137-39952156 | None:intergenic | 15.0% |
| !!! | ATATATATAATTTTCTTGGT+TGG | + | chr4_3:39952206-39952225 | Msa0640760:intron | 15.0% |
| !! | TATCTATGGTTAAAATAAAA+GGG | - | chr4_3:39952330-39952349 | None:intergenic | 15.0% |
| !! | TTATCTATGGTTAAAATAAA+AGG | - | chr4_3:39952331-39952350 | None:intergenic | 15.0% |
| !!! | TAGAATATTTTTATGTGATT+TGG | + | chr4_3:39952778-39952797 | Msa0640760:intron | 15.0% |
| !! | AATAATCGAATTCAATTTAA+TGG | + | chr4_3:39952917-39952936 | Msa0640760:intron | 15.0% |
| !! | AAATATCATCACATAAAAAA+TGG | - | chr4_3:39952998-39953017 | None:intergenic | 15.0% |
| !! | ATAATGTTGAATGTAATAAT+GGG | - | chr4_3:39954015-39954034 | None:intergenic | 15.0% |
| !! | TATAATGTTGAATGTAATAA+TGG | - | chr4_3:39954016-39954035 | None:intergenic | 15.0% |
| !! | CTACTGATAATAATAATAAT+GGG | + | chr4_3:39955098-39955117 | Msa0640760:CDS | 15.0% |
| !!! | AATAATGGGATATTGAATTA+TGG | - | chr4_3:39951682-39951701 | None:intergenic | 20.0% |
| !!! | TTATGATCATCTTGATAATT+TGG | + | chr4_3:39951783-39951802 | Msa0640760:intron | 20.0% |
| !!! | ATTTTTTTCCTTCCATTTAT+TGG | + | chr4_3:39951981-39952000 | Msa0640760:intron | 20.0% |
| !! | GAAAACAGAATTATTATCTA+TGG | - | chr4_3:39952344-39952363 | None:intergenic | 20.0% |
| !! | ATATTTGTTTCACAAATAAG+AGG | - | chr4_3:39952806-39952825 | None:intergenic | 20.0% |
| !! | AAGATAATGATTAAAGACTA+AGG | - | chr4_3:39954148-39954167 | None:intergenic | 20.0% |
| !!! | TTTAAATATGCATTGATGTT+TGG | + | chr4_3:39954391-39954410 | Msa0640760:intron | 20.0% |
| !! | TAGTTAAAATACTAATGAAG+TGG | + | chr4_3:39954521-39954540 | Msa0640760:intron | 20.0% |
| !!! | AATTTTGATTGGTTTTGATT+AGG | - | chr4_3:39954932-39954951 | None:intergenic | 20.0% |
| !! | GCTACTGATAATAATAATAA+TGG | + | chr4_3:39955097-39955116 | Msa0640760:CDS | 20.0% |
| !!! | TATTTTTTTCTTCAACAGCT+TGG | + | chr4_3:39951814-39951833 | Msa0640760:intron | 25.0% |
| ! | TAAGTTCATTAAATTCAGCT+AGG | - | chr4_3:39951949-39951968 | None:intergenic | 25.0% |
| !!! | ATTTTGATCCAATAAATGGA+AGG | - | chr4_3:39951992-39952011 | None:intergenic | 25.0% |
| !!! | CTCAATTTTGATCCAATAAA+TGG | - | chr4_3:39951996-39952015 | None:intergenic | 25.0% |
| !!! | TATAATTTTCTTGGTTGGTT+TGG | + | chr4_3:39952211-39952230 | Msa0640760:intron | 25.0% |
| ! | GTTAAAATAAAAGGGAGAAA+TGG | - | chr4_3:39952322-39952341 | None:intergenic | 25.0% |
| ! | TTAGAACACTATTAACATGA+TGG | + | chr4_3:39952869-39952888 | Msa0640760:intron | 25.0% |
| ! | TAGAACACTATTAACATGAT+GGG | + | chr4_3:39952870-39952889 | Msa0640760:intron | 25.0% |
| !! | CATCACATAAAAAATGGATT+TGG | - | chr4_3:39952992-39953011 | None:intergenic | 25.0% |
| !! | AAAGGAAAAGAAGTTTTTGA+TGG | + | chr4_3:39953184-39953203 | Msa0640760:CDS | 25.0% |
| ! | AATAAGGTTATGGTAGTTAA+AGG | + | chr4_3:39953286-39953305 | Msa0640760:CDS | 25.0% |
| !! | GAAGTTTATGATGGAAAATT+TGG | + | chr4_3:39953313-39953332 | Msa0640760:CDS | 25.0% |
| ! | AAAAAGAGAATTGAGAATGA+TGG | + | chr4_3:39953445-39953464 | Msa0640760:CDS | 25.0% |
| ! | AATGAGAAAACCTATAAGTA+AGG | + | chr4_3:39953552-39953571 | Msa0640760:CDS | 25.0% |
| ! | TAACATCCTCATTATTACTT+AGG | - | chr4_3:39953630-39953649 | None:intergenic | 25.0% |
| ! | TGTTAATGTTGAAAATGTTG+AGG | + | chr4_3:39953645-39953664 | Msa0640760:CDS | 25.0% |
| !!! | ACACTTTAAGATACTTACAA+TGG | - | chr4_3:39953719-39953738 | None:intergenic | 25.0% |
| ! | TTGAGTATAATCAAGTGTAA+TGG | - | chr4_3:39954813-39954832 | None:intergenic | 25.0% |
| ! | AATAACAATGGAAATATCAC+CGG | + | chr4_3:39955139-39955158 | Msa0640760:CDS | 25.0% |
| !! | AACTCAAGGTTGATATTAAC+TGG | - | chr4_3:39951416-39951435 | None:intergenic | 30.0% |
| ! | ACCTAATATTGACTAGGAAA+GGG | - | chr4_3:39951484-39951503 | None:intergenic | 30.0% |
| CTTGTTTCATTAGATGAGAT+TGG | - | chr4_3:39951530-39951549 | None:intergenic | 30.0% | |
| ACTATGAATATGATCCTTGT+CGG | - | chr4_3:39951618-39951637 | None:intergenic | 30.0% | |
| TAGTGATACATCATCTTTGT+TGG | + | chr4_3:39951634-39951653 | Msa0640760:CDS | 30.0% | |
| !! | ACTACTAGTATTGGTAGTAA+CGG | - | chr4_3:39951848-39951867 | None:intergenic | 30.0% |
| AGATTGATCACTACTAGTAT+TGG | - | chr4_3:39951857-39951876 | None:intergenic | 30.0% | |
| !! | TGTCTATATTTGATAATGCC+TGG | + | chr4_3:39952040-39952059 | Msa0640760:intron | 30.0% |
| ATTCACGTAGACAACAATAT+GGG | + | chr4_3:39952096-39952115 | Msa0640760:intron | 30.0% | |
| CATCCAATGATATGTTATCA+CGG | + | chr4_3:39952415-39952434 | Msa0640760:intron | 30.0% | |
| TTACCGTGATAACATATCAT+TGG | - | chr4_3:39952421-39952440 | None:intergenic | 30.0% | |
| ATTGACATACACATAAACAC+TGG | - | chr4_3:39952753-39952772 | None:intergenic | 30.0% | |
| AGAACACTATTAACATGATG+GGG | + | chr4_3:39952871-39952890 | Msa0640760:intron | 30.0% | |
| TCAGCAAAAACAAAATGCAT+TGG | - | chr4_3:39952898-39952917 | None:intergenic | 30.0% | |
| ! | TTCATTGAACTGTTTTCAGA+TGG | + | chr4_3:39953021-39953040 | Msa0640760:intron | 30.0% |
| CGAGCTTAAACAAAAGAAAA+CGG | + | chr4_3:39953057-39953076 | Msa0640760:CDS | 30.0% | |
| AGATTACAATTACATGCGAA+TGG | + | chr4_3:39953120-39953139 | Msa0640760:CDS | 30.0% | |
| GAGAAAAAAATAGCTGAGAA+TGG | + | chr4_3:39953217-39953236 | Msa0640760:CDS | 30.0% | |
| AAAAAAATAGCTGAGAATGG+TGG | + | chr4_3:39953220-39953239 | Msa0640760:CDS | 30.0% | |
| AAAGGACAAGAAGTTTATGA+TGG | + | chr4_3:39953304-39953323 | Msa0640760:CDS | 30.0% | |
| GAGAAAAAGAGAATGAAGAA+CGG | + | chr4_3:39953337-39953356 | Msa0640760:CDS | 30.0% | |
| !! | AAAAGGAAATTTGTTGATGC+TGG | + | chr4_3:39953373-39953392 | Msa0640760:CDS | 30.0% |
| !! | AAAGGAAATTTGTTGATGCT+GGG | + | chr4_3:39953374-39953393 | Msa0640760:CDS | 30.0% |
| !! | AAGGTCAAAGAAGTGTTTAA+TGG | + | chr4_3:39953409-39953428 | Msa0640760:CDS | 30.0% |
| ! | TATAGGTTTTCTCATTGATG+AGG | - | chr4_3:39953548-39953567 | None:intergenic | 30.0% |
| GTTAGTCCTAAGTAATAATG+AGG | + | chr4_3:39953621-39953640 | Msa0640760:CDS | 30.0% | |
| TTATTGTGTTAGATCACTGA+TGG | + | chr4_3:39953809-39953828 | Msa0640760:intron | 30.0% | |
| ! | AGAAGAAAGTTACCTGTTTT+CGG | - | chr4_3:39953928-39953947 | None:intergenic | 30.0% |
| AATTTGATATACATTGCACG+AGG | + | chr4_3:39954231-39954250 | Msa0640760:intron | 30.0% | |
| ! | CATGTTTCTATGCTAGAAAA+TGG | + | chr4_3:39954302-39954321 | Msa0640760:intron | 30.0% |
| ! | TCTATGCTAGAAAATGGATT+TGG | + | chr4_3:39954308-39954327 | Msa0640760:intron | 30.0% |
| ! | TAAATGCATGGATTGCATAT+TGG | - | chr4_3:39954341-39954360 | None:intergenic | 30.0% |
| CAACAAACTCAAATCCAAAA+TGG | + | chr4_3:39954481-39954500 | Msa0640760:intron | 30.0% | |
| !!! | GTATTTTAACTAACCTAGCT+AGG | - | chr4_3:39954513-39954532 | None:intergenic | 30.0% |
| CACTATAGTTCAAACTTAAC+AGG | + | chr4_3:39954569-39954588 | Msa0640760:intron | 30.0% | |
| TTCAAACTTAACAGGTACAA+AGG | + | chr4_3:39954577-39954596 | Msa0640760:intron | 30.0% | |
| !!! | AGTTGTTTTTGCCATTTCTT+TGG | - | chr4_3:39954654-39954673 | None:intergenic | 30.0% |
| AATACTTGAAGAACAAGGAA+GGG | - | chr4_3:39954759-39954778 | None:intergenic | 30.0% | |
| GTATAATCAAGTGTAATGGT+TGG | - | chr4_3:39954809-39954828 | None:intergenic | 30.0% | |
| ! | AAGGAGTTTGAAACTGATAT+GGG | - | chr4_3:39954859-39954878 | None:intergenic | 30.0% |
| ! | AAAGGAGTTTGAAACTGATA+TGG | - | chr4_3:39954860-39954879 | None:intergenic | 30.0% |
| !! | AAGGGACACAAAATTTTGAT+TGG | - | chr4_3:39954943-39954962 | None:intergenic | 30.0% |
| !! | AAAATTTGGATTAGCAGCAA+TGG | - | chr4_3:39955011-39955030 | None:intergenic | 30.0% |
| GATAAAACTGCAGGAAAATT+TGG | - | chr4_3:39955025-39955044 | None:intergenic | 30.0% | |
| TCCCTTTCCTAGTCAATATT+AGG | + | chr4_3:39951480-39951499 | Msa0640760:CDS | 35.0% | |
| ! | GACCTAATATTGACTAGGAA+AGG | - | chr4_3:39951485-39951504 | None:intergenic | 35.0% |
| TTCATTAGATGAGATTGGAG+AGG | - | chr4_3:39951525-39951544 | None:intergenic | 35.0% | |
| TATGAATATGATCCTTGTCG+GGG | - | chr4_3:39951616-39951635 | None:intergenic | 35.0% | |
| CTATGAATATGATCCTTGTC+GGG | - | chr4_3:39951617-39951636 | None:intergenic | 35.0% | |
| !! | CTACTAGTATTGGTAGTAAC+GGG | - | chr4_3:39951847-39951866 | None:intergenic | 35.0% |
| GTTCTCTTGTCTTCTGAATT+AGG | - | chr4_3:39951901-39951920 | None:intergenic | 35.0% | |
| AGAAGACAAGAGAACTAAGA+GGG | + | chr4_3:39951906-39951925 | Msa0640760:CDS | 35.0% | |
| GATTCACGTAGACAACAATA+TGG | + | chr4_3:39952095-39952114 | Msa0640760:intron | 35.0% | |
| ! | TAAAATGGAAGTGAGAGCAT+TGG | - | chr4_3:39952122-39952141 | None:intergenic | 35.0% |
| TTGATGTAGCAACACATCAT+TGG | + | chr4_3:39952481-39952500 | Msa0640760:intron | 35.0% | |
| CCGGAAAATTTGAGTAGTAA+GGG | - | chr4_3:39952655-39952674 | None:intergenic | 35.0% | |
| ! | CCCTTACTACTCAAATTTTC+CGG | + | chr4_3:39952652-39952671 | Msa0640760:intron | 35.0% |
| ! | CCTTACTACTCAAATTTTCC+GGG | + | chr4_3:39952653-39952672 | Msa0640760:intron | 35.0% |
| TTTCTGTCCGTATCATATAG+GGG | - | chr4_3:39952689-39952708 | None:intergenic | 35.0% | |
| GTTTCTGTCCGTATCATATA+GGG | - | chr4_3:39952690-39952709 | None:intergenic | 35.0% | |
| ! | TGTTTCTGTCCGTATCATAT+AGG | - | chr4_3:39952691-39952710 | None:intergenic | 35.0% |
| CATGCGAATAAAACGTTTCA+GGG | - | chr4_3:39952960-39952979 | None:intergenic | 35.0% | |
| ACATGCGAATAAAACGTTTC+AGG | - | chr4_3:39952961-39952980 | None:intergenic | 35.0% | |
| !! | AACGTTTTATTCGCATGTGA+TGG | + | chr4_3:39952963-39952982 | Msa0640760:intron | 35.0% |
| !! | ACGTTTTATTCGCATGTGAT+GGG | + | chr4_3:39952964-39952983 | Msa0640760:intron | 35.0% |
| TTTCAGATGGCTATTCTTCA+AGG | + | chr4_3:39953034-39953053 | Msa0640760:intron | 35.0% | |
| GAAAGTGATGCAAGATTGTA+AGG | + | chr4_3:39953150-39953169 | Msa0640760:CDS | 35.0% | |
| GATGCAAGATTGTAAGGTTA+AGG | + | chr4_3:39953156-39953175 | Msa0640760:CDS | 35.0% | |
| TGTAAGGTTAAGGAAGTCAA+AGG | + | chr4_3:39953166-39953185 | Msa0640760:CDS | 35.0% | |
| ! | CCAAGATCCATAATTTTCCT+TGG | - | chr4_3:39953256-39953275 | None:intergenic | 35.0% |
| CCAAGGAAAATTATGGATCT+TGG | + | chr4_3:39953253-39953272 | Msa0640760:CDS | 35.0% | |
| GAAAATTATGGATCTTGGAG+CGG | + | chr4_3:39953258-39953277 | Msa0640760:CDS | 35.0% | |
| AAAAAGAGAATGAAGAACGG+TGG | + | chr4_3:39953340-39953359 | Msa0640760:CDS | 35.0% | |
| ! | AATTGAGAATGATGGAGAGT+TGG | + | chr4_3:39953453-39953472 | Msa0640760:CDS | 35.0% |
| CCTAACTGATCCTTACTTAT+AGG | - | chr4_3:39953565-39953584 | None:intergenic | 35.0% | |
| CCTATAAGTAAGGATCAGTT+AGG | + | chr4_3:39953562-39953581 | Msa0640760:CDS | 35.0% | |
| !! | GATAATACGCTTTAGGACAT+GGG | - | chr4_3:39953877-39953896 | None:intergenic | 35.0% |
| TAATGGGAAAGCAATCACTA+AGG | - | chr4_3:39953999-39954018 | None:intergenic | 35.0% | |
| !! | AGAAACATGAGCTTTGAAAG+TGG | - | chr4_3:39954291-39954310 | None:intergenic | 35.0% |
| ACATCAACATCAAGCAATGA+TGG | + | chr4_3:39954701-39954720 | Msa0640760:CDS | 35.0% | |
| ATACTTGAAGAACAAGGAAG+GGG | - | chr4_3:39954758-39954777 | None:intergenic | 35.0% | |
| CAATACTTGAAGAACAAGGA+AGG | - | chr4_3:39954760-39954779 | None:intergenic | 35.0% | |
| GTTGCAATACTTGAAGAACA+AGG | - | chr4_3:39954764-39954783 | None:intergenic | 35.0% | |
| AAGTGTAATGGTTGGAAATG+GGG | - | chr4_3:39954801-39954820 | None:intergenic | 35.0% | |
| CAAGTGTAATGGTTGGAAAT+GGG | - | chr4_3:39954802-39954821 | None:intergenic | 35.0% | |
| TCAAGTGTAATGGTTGGAAA+TGG | - | chr4_3:39954803-39954822 | None:intergenic | 35.0% | |
| AGGAATTTGCAGAAGTTTGA+CGG | - | chr4_3:39954886-39954905 | None:intergenic | 35.0% | |
| TTGTGTCCCTTCAAAACTAT+TGG | + | chr4_3:39954952-39954971 | Msa0640760:CDS | 35.0% | |
| !!! | GAACTGCCAATAGTTTTGAA+GGG | - | chr4_3:39954961-39954980 | None:intergenic | 35.0% |
| GTCGCAAAAGGTAATAACAA+TGG | + | chr4_3:39955127-39955146 | Msa0640760:CDS | 35.0% | |
| TGGGACTAAGTTTCAACTCA+AGG | - | chr4_3:39951430-39951449 | None:intergenic | 40.0% | |
| ACTTAGTCCCAACGAAAACA+TGG | + | chr4_3:39951439-39951458 | Msa0640760:CDS | 40.0% | |
| ! | GTAGCATCCATGTTTTCGTT+GGG | - | chr4_3:39951449-39951468 | None:intergenic | 40.0% |
| ! | TGTAGCATCCATGTTTTCGT+TGG | - | chr4_3:39951450-39951469 | None:intergenic | 40.0% |
| ! | TGGAGGACCTAATATTGACT+AGG | - | chr4_3:39951490-39951509 | None:intergenic | 40.0% |
| !!! | AGAGGTTTGGTTTTCATTGG+AGG | - | chr4_3:39951507-39951526 | None:intergenic | 40.0% |
| !!! | TGGAGAGGTTTGGTTTTCAT+TGG | - | chr4_3:39951510-39951529 | None:intergenic | 40.0% |
| TAGATGAGATTGGAGAGGTT+TGG | - | chr4_3:39951520-39951539 | None:intergenic | 40.0% | |
| ! | GTATTGGTAGTAACGGGATT+GGG | - | chr4_3:39951841-39951860 | None:intergenic | 40.0% |
| !! | AGTATTGGTAGTAACGGGAT+TGG | - | chr4_3:39951842-39951861 | None:intergenic | 40.0% |
| CAGAAGACAAGAGAACTAAG+AGG | + | chr4_3:39951905-39951924 | Msa0640760:CDS | 40.0% | |
| ATTCGAGTGTCACACGTTAA+CGG | - | chr4_3:39952068-39952087 | None:intergenic | 40.0% | |
| TTAACGTGTGACACTCGAAT+AGG | + | chr4_3:39952068-39952087 | Msa0640760:intron | 40.0% | |
| TAACGTGTGACACTCGAATA+GGG | + | chr4_3:39952069-39952088 | Msa0640760:intron | 40.0% | |
| !! | GTTGGTTTGGTTTGTAGCTT+TGG | + | chr4_3:39952224-39952243 | Msa0640760:intron | 40.0% |
| GGAGAAATGGATGACACTAA+TGG | - | chr4_3:39952309-39952328 | None:intergenic | 40.0% | |
| CCCGGAAAATTTGAGTAGTA+AGG | - | chr4_3:39952656-39952675 | None:intergenic | 40.0% | |
| TATCATATAGGGGCAATGAC+GGG | - | chr4_3:39952679-39952698 | None:intergenic | 40.0% | |
| GTATCATATAGGGGCAATGA+CGG | - | chr4_3:39952680-39952699 | None:intergenic | 40.0% | |
| GTCATTGCCCCTATATGATA+CGG | + | chr4_3:39952679-39952698 | Msa0640760:intron | 40.0% | |
| ! | ACTGGTGCCAAGGAAAATTA+TGG | + | chr4_3:39953246-39953265 | Msa0640760:CDS | 40.0% |
| AGCGGCTACTAATAAGGTTA+TGG | + | chr4_3:39953276-39953295 | Msa0640760:CDS | 40.0% | |
| ACGGTGGAGAATTAGTGAAA+AGG | + | chr4_3:39953356-39953375 | Msa0640760:CDS | 40.0% | |
| !! | GAAATTTGTTGATGCTGGGT+TGG | + | chr4_3:39953378-39953397 | Msa0640760:CDS | 40.0% |
| TACTAATGCTGAGACTGTGA+TGG | + | chr4_3:39953507-39953526 | Msa0640760:CDS | 40.0% | |
| ! | AGATCACTGATGGATGTCAA+TGG | + | chr4_3:39953819-39953838 | Msa0640760:intron | 40.0% |
| GGATGTCAATGGAGAAAGTA+TGG | + | chr4_3:39953830-39953849 | Msa0640760:CDS | 40.0% | |
| !! | CGATAATACGCTTTAGGACA+TGG | - | chr4_3:39953878-39953897 | None:intergenic | 40.0% |
| CTGCAACGATAATACGCTTT+AGG | - | chr4_3:39953884-39953903 | None:intergenic | 40.0% | |
| ATGGTCGTTGTATCGAAGAT+TGG | - | chr4_3:39954422-39954441 | None:intergenic | 40.0% | |
| CCATATAGTAAGTACGTCGA+TGG | - | chr4_3:39954441-39954460 | None:intergenic | 40.0% | |
| CCATCGACGTACTTACTATA+TGG | + | chr4_3:39954438-39954457 | Msa0640760:intron | 40.0% | |
| ! | TAGCTAGGTAGCTACCATTT+TGG | - | chr4_3:39954498-39954517 | None:intergenic | 40.0% |
| AAAATGGTAGCTACCTAGCT+AGG | + | chr4_3:39954497-39954516 | Msa0640760:intron | 40.0% | |
| AATCTCCAACTACTCCACAA+AGG | + | chr4_3:39954831-39954850 | Msa0640760:CDS | 40.0% | |
| AACTGATATGGGTTCCTTTG+TGG | - | chr4_3:39954848-39954867 | None:intergenic | 40.0% | |
| !! | GCAGAAGTTTGACGGATTAA+AGG | - | chr4_3:39954878-39954897 | None:intergenic | 40.0% |
| !!! | GGAACTGCCAATAGTTTTGA+AGG | - | chr4_3:39954962-39954981 | None:intergenic | 40.0% |
| TGGCAGTTCCAAATATTGCT+CGG | + | chr4_3:39954972-39954991 | Msa0640760:CDS | 40.0% | |
| AGAGTAGCTGATAAAACTGC+AGG | - | chr4_3:39955034-39955053 | None:intergenic | 40.0% | |
| GCTACTCTTACTTCCATGAT+TGG | + | chr4_3:39955046-39955065 | Msa0640760:CDS | 40.0% | |
| AATGGGAACAATGTCGCAAA+AGG | + | chr4_3:39955115-39955134 | Msa0640760:CDS | 40.0% | |
| TAGCAACAACAAAGATGGGA+AGG | + | chr4_3:39955162-39955181 | Msa0640760:CDS | 40.0% | |
| AGGCAGAGACAACTTCTTGA+TGG | - | chr4_3:39951589-39951608 | None:intergenic | 45.0% | |
| AGACAAGAGAACTAAGAGGG+AGG | + | chr4_3:39951909-39951928 | Msa0640760:CDS | 45.0% | |
| TTCGAGTGTCACACGTTAAC+GGG | - | chr4_3:39952067-39952086 | None:intergenic | 45.0% | |
| TCTTGGAGCGGCTACTAATA+AGG | + | chr4_3:39953270-39953289 | Msa0640760:CDS | 45.0% | |
| !! | TGCTGGGTTGGCTACTAATA+AGG | + | chr4_3:39953390-39953409 | Msa0640760:CDS | 45.0% |
| !! | ATGATGGAGAGTTGGTGCAA+AGG | + | chr4_3:39953461-39953480 | Msa0640760:CDS | 45.0% |
| ! | AGTTGGTGCAAAGGCAATGT+AGG | + | chr4_3:39953470-39953489 | Msa0640760:CDS | 45.0% |
| GTTGGTGCAAAGGCAATGTA+GGG | + | chr4_3:39953471-39953490 | Msa0640760:CDS | 45.0% | |
| ! | ATCAGCGTTGAAAAGCTTCG+AGG | + | chr4_3:39953585-39953604 | Msa0640760:CDS | 45.0% |
| AGCGTATTATCGTTGCAGCA+TGG | + | chr4_3:39953886-39953905 | Msa0640760:CDS | 45.0% | |
| CATGTATGTGACTGCGATGT+AGG | - | chr4_3:39954113-39954132 | None:intergenic | 45.0% | |
| TTTAATGGCCATCGACGTAC+TGG | - | chr4_3:39954369-39954388 | None:intergenic | 45.0% | |
| TTGAGAGATCAGAGAAGCTG+AGG | - | chr4_3:39954906-39954925 | None:intergenic | 45.0% | |
| GGCAGTTCCAAATATTGCTC+GGG | + | chr4_3:39954973-39954992 | Msa0640760:CDS | 45.0% | |
| TTGACTGCCCGAGCAATATT+TGG | - | chr4_3:39954983-39955002 | None:intergenic | 45.0% | |
| TGGCTGAGTATCACCAATCA+TGG | - | chr4_3:39955062-39955081 | None:intergenic | 45.0% | |
| ! | GTAGCAGCAGTAGTGTTGTT+TGG | - | chr4_3:39955082-39955101 | None:intergenic | 45.0% |
| ACCGGTAGCAACAACAAAGA+TGG | + | chr4_3:39955157-39955176 | Msa0640760:CDS | 45.0% | |
| !! | CCCATCTTTGTTGTTGCTAC+CGG | - | chr4_3:39955161-39955180 | None:intergenic | 45.0% |
| CCGGTAGCAACAACAAAGAT+GGG | + | chr4_3:39955158-39955177 | Msa0640760:CDS | 45.0% | |
| !!! | ATATATATATATAATTTTCT+TGG | + | chr4_3:39952202-39952221 | Msa0640760:intron | 5.0% |
| !! | TAAAATATATGTATTTATTA+TGG | + | chr4_3:39953957-39953976 | Msa0640760:intron | 5.0% |
| GTGTGACACTCGAATAGGGA+TGG | + | chr4_3:39952073-39952092 | Msa0640760:intron | 50.0% | |
| ! | AGCTGAGAATGGTGGAGTAC+TGG | + | chr4_3:39953228-39953247 | Msa0640760:CDS | 50.0% |
| ! | AGCGTTGAAAAGCTTCGAGG+AGG | + | chr4_3:39953588-39953607 | Msa0640760:CDS | 50.0% |
| ! | TTTTCGGACTGAGCAACCAC+GGG | - | chr4_3:39953912-39953931 | None:intergenic | 50.0% |
| ! | GTTTTCGGACTGAGCAACCA+CGG | - | chr4_3:39953913-39953932 | None:intergenic | 50.0% |
| TGGTTGCTCAGTCCGAAAAC+AGG | + | chr4_3:39953913-39953932 | Msa0640760:CDS | 50.0% | |
| !! | GTACTGGCTGCGTAAATGCA+TGG | - | chr4_3:39954353-39954372 | None:intergenic | 50.0% |
| CTTTGGCTGCTGCAGGTAAA+GGG | - | chr4_3:39954637-39954656 | None:intergenic | 50.0% | |
| TCTTTGGCTGCTGCAGGTAA+AGG | - | chr4_3:39954638-39954657 | None:intergenic | 50.0% | |
| ACCTGCAGCAGCCAAAGAAA+TGG | + | chr4_3:39954640-39954659 | Msa0640760:CDS | 50.0% | |
| GGGTTCCTTTGTGGAGTAGT+TGG | - | chr4_3:39954839-39954858 | None:intergenic | 50.0% | |
| ATGATCCTTGTCGGGGACAG+AGG | - | chr4_3:39951609-39951628 | None:intergenic | 55.0% | |
| ! | TGTCACACGTTAACGGGTCC+AGG | - | chr4_3:39952061-39952080 | None:intergenic | 55.0% |
| !! | ATGGTGGAGTACTGGTGCCA+AGG | + | chr4_3:39953236-39953255 | Msa0640760:CDS | 55.0% |
| AAGCTTCGAGGAGGCTTCGA+AGG | + | chr4_3:39953597-39953616 | Msa0640760:CDS | 55.0% | |
| TTACGCAGCCAGTACGTCGA+TGG | + | chr4_3:39954358-39954377 | Msa0640760:intron | 55.0% | |
| GCCATTTCTTTGGCTGCTGC+AGG | - | chr4_3:39954644-39954663 | None:intergenic | 55.0% | |
| !! | TATAGGGGCAATGACGGGCC+CGG | - | chr4_3:39952674-39952693 | None:intergenic | 60.0% |
| TATCGTTGCAGCATGGCCCG+TGG | + | chr4_3:39953893-39953912 | Msa0640760:CDS | 60.0% | |
| TGGCTGCTGCAGGTAAAGGG+TGG | - | chr4_3:39954634-39954653 | None:intergenic | 60.0% | |
| CTCTGCCTCTGTCCCCGACA+AGG | + | chr4_3:39951601-39951620 | Msa0640760:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 39951401 | 39955189 | 39951401 | ID=Msa0640760;Name=Msa0640760 |
| chr4_3 | mRNA | 39951401 | 39955189 | 39951401 | ID=Msa0640760-mRNA-1;Parent=Msa0640760;Name=Msa0640760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|5|0|579 |
| chr4_3 | exon | 39951401 | 39951670 | 39951401 | ID=Msa0640760-mRNA-1:exon:8975;Parent=Msa0640760-mRNA-1 |
| chr4_3 | exon | 39951832 | 39951930 | 39951832 | ID=Msa0640760-mRNA-1:exon:8976;Parent=Msa0640760-mRNA-1 |
| chr4_3 | exon | 39953040 | 39953720 | 39953040 | ID=Msa0640760-mRNA-1:exon:8977;Parent=Msa0640760-mRNA-1 |
| chr4_3 | exon | 39953821 | 39953934 | 39953821 | ID=Msa0640760-mRNA-1:exon:8978;Parent=Msa0640760-mRNA-1 |
| chr4_3 | exon | 39954614 | 39955189 | 39954614 | ID=Msa0640760-mRNA-1:exon:8979;Parent=Msa0640760-mRNA-1 |
| chr4_3 | CDS | 39951401 | 39951670 | 39951401 | ID=Msa0640760-mRNA-1:cds;Parent=Msa0640760-mRNA-1 |
| chr4_3 | CDS | 39951832 | 39951930 | 39951832 | ID=Msa0640760-mRNA-1:cds;Parent=Msa0640760-mRNA-1 |
| chr4_3 | CDS | 39953040 | 39953720 | 39953040 | ID=Msa0640760-mRNA-1:cds;Parent=Msa0640760-mRNA-1 |
| chr4_3 | CDS | 39953821 | 39953934 | 39953821 | ID=Msa0640760-mRNA-1:cds;Parent=Msa0640760-mRNA-1 |
| chr4_3 | CDS | 39954614 | 39955189 | 39954614 | ID=Msa0640760-mRNA-1:cds;Parent=Msa0640760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
