Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641040 | XP_013455733.1 | 91.489 | 235 | 19 | 1 | 1 | 235 | 1 | 234 | 1.98e-144 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641040 | sp|O64703|AGL29_ARATH | 36.585 | 123 | 70 | 4 | 9 | 124 | 2 | 123 | 1.72e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0641040 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641040 | MtrunA17_Chr4g0025531 | 91.489 | 235 | 19 | 1 | 1 | 235 | 1 | 234 | 1.82e-148 | 413 |
| Msa0641040 | MtrunA17_Chr3g0135891 | 51.969 | 127 | 49 | 3 | 106 | 220 | 16 | 142 | 8.03e-31 | 111 |
| Msa0641040 | MtrunA17_Chr1g0206721 | 34.247 | 146 | 85 | 3 | 1 | 140 | 1 | 141 | 7.38e-18 | 79.7 |
| Msa0641040 | MtrunA17_Chr1g0208561 | 31.288 | 163 | 100 | 4 | 1 | 151 | 1 | 163 | 1.45e-17 | 78.6 |
| Msa0641040 | MtrunA17_Chr3g0089141 | 31.288 | 163 | 100 | 4 | 1 | 151 | 1 | 163 | 3.65e-17 | 77.4 |
| Msa0641040 | MtrunA17_Chr1g0149391 | 28.302 | 212 | 124 | 8 | 1 | 192 | 1 | 204 | 3.98e-17 | 77.8 |
| Msa0641040 | MtrunA17_Chr1g0206701 | 34.058 | 138 | 76 | 3 | 1 | 126 | 1 | 135 | 4.27e-17 | 77.4 |
| Msa0641040 | MtrunA17_Chr8g0355091 | 33.333 | 135 | 81 | 3 | 1 | 126 | 1 | 135 | 1.15e-16 | 76.3 |
| Msa0641040 | MtrunA17_Chr3g0119901 | 45.882 | 85 | 45 | 1 | 1 | 85 | 1 | 84 | 1.20e-16 | 75.9 |
| Msa0641040 | MtrunA17_Chr8g0379021 | 31.410 | 156 | 99 | 2 | 4 | 151 | 7 | 162 | 1.68e-16 | 74.7 |
| Msa0641040 | MtrunA17_Chr1g0208581 | 32.911 | 158 | 88 | 6 | 1 | 143 | 1 | 155 | 2.62e-16 | 75.1 |
| Msa0641040 | MtrunA17_Chr5g0422421 | 30.380 | 158 | 78 | 4 | 1 | 137 | 1 | 147 | 3.81e-16 | 75.1 |
| Msa0641040 | MtrunA17_Chr3g0099421 | 34.000 | 150 | 83 | 3 | 1 | 137 | 26 | 172 | 4.00e-16 | 75.1 |
| Msa0641040 | MtrunA17_Chr2g0317451 | 31.852 | 135 | 83 | 3 | 1 | 126 | 1 | 135 | 4.39e-16 | 74.7 |
| Msa0641040 | MtrunA17_Chr2g0317481 | 31.852 | 135 | 83 | 3 | 1 | 126 | 1 | 135 | 4.52e-16 | 74.7 |
| Msa0641040 | MtrunA17_Chr3g0099411 | 42.683 | 82 | 47 | 0 | 1 | 82 | 1 | 82 | 5.18e-16 | 74.3 |
| Msa0641040 | MtrunA17_Chr1g0206991 | 34.014 | 147 | 87 | 4 | 1 | 137 | 1 | 147 | 6.80e-16 | 73.2 |
| Msa0641040 | MtrunA17_Chr3g0085241 | 46.341 | 82 | 43 | 1 | 4 | 85 | 36 | 116 | 7.00e-16 | 74.3 |
| Msa0641040 | MtrunA17_Chr2g0292791 | 34.074 | 135 | 80 | 3 | 1 | 126 | 1 | 135 | 7.74e-16 | 73.9 |
| Msa0641040 | MtrunA17_Chr2g0333981 | 29.747 | 158 | 99 | 4 | 4 | 151 | 7 | 162 | 1.24e-15 | 72.4 |
| Msa0641040 | MtrunA17_Chr1g0188671 | 41.463 | 82 | 48 | 0 | 1 | 82 | 39 | 120 | 1.64e-15 | 73.9 |
| Msa0641040 | MtrunA17_Chr2g0325971 | 31.013 | 158 | 91 | 5 | 1 | 143 | 1 | 155 | 6.46e-15 | 71.2 |
| Msa0641040 | MtrunA17_Chr5g0419601 | 41.558 | 77 | 45 | 0 | 1 | 77 | 1 | 77 | 1.89e-14 | 70.5 |
| Msa0641040 | MtrunA17_Chr5g0422941 | 30.833 | 120 | 65 | 2 | 1 | 120 | 1 | 102 | 2.05e-14 | 70.1 |
| Msa0641040 | MtrunA17_Chr1g0187361 | 31.579 | 152 | 84 | 4 | 1 | 137 | 1 | 147 | 6.97e-14 | 68.6 |
| Msa0641040 | MtrunA17_Chr2g0300421 | 34.694 | 98 | 61 | 1 | 1 | 98 | 1 | 95 | 8.93e-14 | 67.4 |
| Msa0641040 | MtrunA17_Chr4g0052081 | 40.580 | 69 | 41 | 0 | 9 | 77 | 2 | 70 | 9.16e-14 | 67.4 |
| Msa0641040 | MtrunA17_Chr4g0052061 | 37.349 | 83 | 52 | 0 | 9 | 91 | 2 | 84 | 1.00e-13 | 66.6 |
| Msa0641040 | MtrunA17_Chr3g0089151 | 40.278 | 72 | 43 | 0 | 1 | 72 | 1 | 72 | 1.25e-13 | 65.9 |
| Msa0641040 | MtrunA17_Chr2g0300441 | 24.519 | 208 | 137 | 6 | 1 | 192 | 1 | 204 | 8.24e-13 | 65.9 |
| Msa0641040 | MtrunA17_Chr3g0111841 | 44.828 | 58 | 32 | 0 | 15 | 72 | 2 | 59 | 2.40e-11 | 58.2 |
| Msa0641040 | MtrunA17_Chr8g0356071 | 36.111 | 72 | 46 | 0 | 9 | 80 | 2 | 73 | 2.60e-11 | 60.1 |
| Msa0641040 | MtrunA17_Chr8g0376821 | 33.750 | 80 | 52 | 1 | 9 | 87 | 2 | 81 | 6.32e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641040 | AT4G36590.1 | 48.529 | 68 | 35 | 0 | 5 | 72 | 3 | 70 | 5.88e-17 | 77.8 |
| Msa0641040 | AT2G34440.1 | 36.585 | 123 | 70 | 4 | 9 | 124 | 2 | 123 | 1.75e-16 | 74.7 |
| Msa0641040 | AT1G29962.1 | 45.000 | 80 | 43 | 1 | 1 | 80 | 1 | 79 | 2.92e-16 | 74.7 |
| Msa0641040 | AT2G24840.1 | 42.500 | 80 | 46 | 0 | 7 | 86 | 61 | 140 | 4.99e-15 | 72.8 |
| Msa0641040 | AT5G60440.1 | 31.724 | 145 | 86 | 4 | 5 | 148 | 3 | 135 | 2.61e-14 | 71.2 |
| Msa0641040 | AT1G28460.1 | 44.156 | 77 | 42 | 1 | 1 | 77 | 1 | 76 | 7.78e-14 | 67.8 |
| Msa0641040 | AT1G01530.1 | 33.645 | 107 | 67 | 1 | 5 | 107 | 3 | 109 | 7.29e-13 | 66.2 |
| Msa0641040 | AT3G04100.1 | 36.782 | 87 | 52 | 1 | 2 | 88 | 7 | 90 | 4.64e-12 | 63.5 |
| Msa0641040 | AT1G28450.1 | 40.000 | 80 | 47 | 1 | 1 | 80 | 1 | 79 | 1.47e-11 | 61.6 |
| Msa0641040 | AT1G65360.1 | 39.062 | 64 | 39 | 0 | 5 | 68 | 3 | 66 | 3.16e-11 | 61.6 |
| Msa0641040 | AT3G66656.1 | 40.000 | 65 | 39 | 0 | 9 | 73 | 2 | 66 | 5.68e-11 | 60.1 |
Find 41 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAGTTAACAACACTTTC+AGG | 0.202264 | 4_3:+40739462 | Msa0641040:CDS |
| TTGAAGAAGTTGGAAAGTTC+TGG | 0.270990 | 4_3:+40739693 | Msa0641040:CDS |
| TGCACCAACTTCATGATCTT+TGG | 0.281401 | 4_3:-40740024 | None:intergenic |
| ACACAAGGAGTCAACCTTAT+TGG | 0.301989 | 4_3:+40740399 | Msa0641040:CDS |
| TTTCCTCTTGATGACCTCTT+AGG | 0.319454 | 4_3:-40739351 | None:intergenic |
| ATAACCAATGTCTTGAAAAC+TGG | 0.328346 | 4_3:+40739795 | Msa0641040:CDS |
| ATCATTTCCTCTTCCATTGA+AGG | 0.330256 | 4_3:-40739588 | None:intergenic |
| CTTATTGGTGTAAGCGGAAT+AGG | 0.333563 | 4_3:+40740414 | Msa0641040:CDS |
| CTTCTACCATGTCATATATC+TGG | 0.335672 | 4_3:-40740465 | None:intergenic |
| CTATTCCGCTTACACCAATA+AGG | 0.352863 | 4_3:-40740413 | None:intergenic |
| TTTCTTTCACTTGATCATAT+TGG | 0.353442 | 4_3:-40739737 | None:intergenic |
| AAATTATCCTTATGTCTTTG+AGG | 0.373229 | 4_3:+40739995 | Msa0641040:CDS |
| AGTTGGAAAGTTCTGGATAT+TGG | 0.382288 | 4_3:+40739700 | Msa0641040:CDS |
| TTTATTTGTGACAGCAACTA+AGG | 0.402905 | 4_3:-40739769 | None:intergenic |
| ATTCTCATGCTTTCTCCAAC+GGG | 0.403336 | 4_3:+40739498 | Msa0641040:CDS |
| TTTGTTATAGATTCAGAAGA+TGG | 0.410640 | 4_3:-40739543 | None:intergenic |
| GGAAGAGGAAATGATGAAAC+CGG | 0.442189 | 4_3:+40739596 | Msa0641040:CDS |
| GCATTTACAACGAGAAAGTC+TGG | 0.455029 | 4_3:+40739423 | Msa0641040:CDS |
| GTGTTGTCCTCAAAGACATA+AGG | 0.455692 | 4_3:-40740002 | None:intergenic |
| GAAGGATGAAAATCCTTCAA+TGG | 0.468568 | 4_3:+40739575 | Msa0641040:CDS |
| GACTCCATTCAGTTCCTCAA+TGG | 0.472764 | 4_3:-40739967 | None:intergenic |
| GGTGTAAGCGGAATAGGATA+TGG | 0.475102 | 4_3:+40740420 | Msa0641040:CDS |
| CTGAGTTAACAACACTTTCA+GGG | 0.482866 | 4_3:+40739463 | Msa0641040:CDS |
| TATTCTCATGCTTTCTCCAA+CGG | 0.502164 | 4_3:+40739497 | Msa0641040:CDS |
| TGTAGCAATTTCTACCATTG+AGG | 0.503870 | 4_3:+40739953 | Msa0641040:intron |
| TGAAAATCCTTCAATGGAAG+AGG | 0.510231 | 4_3:+40739581 | Msa0641040:CDS |
| TGATCCAAAAGGTAAAGGTA+TGG | 0.511773 | 4_3:+40740341 | Msa0641040:intron |
| TCTACCATTGAGGAACTGAA+TGG | 0.512244 | 4_3:+40739963 | Msa0641040:CDS |
| GAGTAAGAATGGCGCCTAAG+AGG | 0.560699 | 4_3:+40739337 | None:intergenic |
| AACACCAAAGATCATGAAGT+TGG | 0.566706 | 4_3:+40740020 | Msa0641040:CDS |
| GTCAACCTTATTGGTGTAAG+CGG | 0.584588 | 4_3:+40740408 | Msa0641040:CDS |
| ACCAATGTCTTGAAAACTGG+AGG | 0.591573 | 4_3:+40739798 | Msa0641040:CDS |
| AGCGGAATAGGATATGGAAG+TGG | 0.601533 | 4_3:+40740426 | Msa0641040:CDS |
| TGAGTTAACAACACTTTCAG+GGG | 0.607847 | 4_3:+40739464 | Msa0641040:CDS |
| GGAGGAGAGATTGACCCTCA+TGG | 0.634950 | 4_3:+40739816 | Msa0641040:CDS |
| TGAAAGTGTTGTTAACTCAG+AGG | 0.669188 | 4_3:-40739460 | None:intergenic |
| GCGCCTAAGAGGTCATCAAG+AGG | 0.684362 | 4_3:+40739348 | Msa0641040:CDS |
| TGGATATTGGTCGATAACAG+AGG | 0.686779 | 4_3:+40739713 | Msa0641040:CDS |
| AAGATGTACACATACCATGA+GGG | 0.689701 | 4_3:-40739830 | None:intergenic |
| AAGCATGAGAATATCAACTG+AGG | 0.718686 | 4_3:-40739487 | None:intergenic |
| AAAGTCTGGAATTTACAACA+AGG | 0.757794 | 4_3:+40739437 | Msa0641040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAAAAAATTGAGAAAA+AGG | + | chr4_3:40739386-40739405 | Msa0641040:CDS | 15.0% |
| !! | CTTAAAATAATTAGGTAAAA+AGG | - | chr4_3:40739913-40739932 | None:intergenic | 15.0% |
| !! | AAAAAAATTGAATCAATGAA+AGG | - | chr4_3:40740322-40740341 | None:intergenic | 15.0% |
| !! | ATTGAAAAAAATTGAGAAAA+AGG | + | chr4_3:40739386-40739405 | Msa0641040:CDS | 15.0% |
| !! | CTTAAAATAATTAGGTAAAA+AGG | - | chr4_3:40739913-40739932 | None:intergenic | 15.0% |
| !! | AAAAAAATTGAATCAATGAA+AGG | - | chr4_3:40740322-40740341 | None:intergenic | 15.0% |
| !!! | TATAACAAAAACTAGTTTGA+AGG | + | chr4_3:40739557-40739576 | Msa0641040:CDS | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | + | chr4_3:40739635-40739654 | Msa0641040:CDS | 20.0% |
| !! | CAGATTCACTTAAAATAATT+AGG | - | chr4_3:40739921-40739940 | None:intergenic | 20.0% |
| !!! | CTAATTATTTTAAGTGAATC+TGG | + | chr4_3:40739919-40739938 | Msa0641040:intron | 20.0% |
| !! | TATTACTTGAAATATTCTAG+CGG | + | chr4_3:40740081-40740100 | Msa0641040:intron | 20.0% |
| !! | CAATACATGATATATATGTT+AGG | - | chr4_3:40740294-40740313 | None:intergenic | 20.0% |
| !!! | TTCAATTTTTTTGATCCAAA+AGG | + | chr4_3:40740330-40740349 | Msa0641040:intron | 20.0% |
| !!! | TATAACAAAAACTAGTTTGA+AGG | + | chr4_3:40739557-40739576 | Msa0641040:CDS | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | + | chr4_3:40739635-40739654 | Msa0641040:CDS | 20.0% |
| !! | CAGATTCACTTAAAATAATT+AGG | - | chr4_3:40739921-40739940 | None:intergenic | 20.0% |
| !!! | CTAATTATTTTAAGTGAATC+TGG | + | chr4_3:40739919-40739938 | Msa0641040:intron | 20.0% |
| !! | TATTACTTGAAATATTCTAG+CGG | + | chr4_3:40740081-40740100 | Msa0641040:intron | 20.0% |
| !! | CAATACATGATATATATGTT+AGG | - | chr4_3:40740294-40740313 | None:intergenic | 20.0% |
| !!! | TTCAATTTTTTTGATCCAAA+AGG | + | chr4_3:40740330-40740349 | Msa0641040:intron | 20.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | - | chr4_3:40739546-40739565 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGAAGT+TGG | + | chr4_3:40739683-40739702 | Msa0641040:CDS | 25.0% |
| ! | TTTCTTTCACTTGATCATAT+TGG | - | chr4_3:40739740-40739759 | None:intergenic | 25.0% |
| ! | AAATTATCCTTATGTCTTTG+AGG | + | chr4_3:40739995-40740014 | Msa0641040:CDS | 25.0% |
| ! | TCTTCTTAATTTCCATTACT+AGG | + | chr4_3:40740231-40740250 | Msa0641040:intron | 25.0% |
| !!! | TTTTTTGATCCAAAAGGTAA+AGG | + | chr4_3:40740336-40740355 | Msa0641040:intron | 25.0% |
| ! | ATAGCTACAAAAAAAACACA+AGG | + | chr4_3:40740384-40740403 | Msa0641040:CDS | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | - | chr4_3:40739546-40739565 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGAAGT+TGG | + | chr4_3:40739683-40739702 | Msa0641040:CDS | 25.0% |
| ! | TTTCTTTCACTTGATCATAT+TGG | - | chr4_3:40739740-40739759 | None:intergenic | 25.0% |
| ! | AAATTATCCTTATGTCTTTG+AGG | + | chr4_3:40739995-40740014 | Msa0641040:CDS | 25.0% |
| ! | TCTTCTTAATTTCCATTACT+AGG | + | chr4_3:40740231-40740250 | Msa0641040:intron | 25.0% |
| !!! | TTTTTTGATCCAAAAGGTAA+AGG | + | chr4_3:40740336-40740355 | Msa0641040:intron | 25.0% |
| ! | ATAGCTACAAAAAAAACACA+AGG | + | chr4_3:40740384-40740403 | Msa0641040:CDS | 25.0% |
| ! | AAAGTCTGGAATTTACAACA+AGG | + | chr4_3:40739437-40739456 | Msa0641040:CDS | 30.0% |
| ! | GATGGTTTTCCATAACAAAA+TGG | - | chr4_3:40739528-40739547 | None:intergenic | 30.0% |
| ! | TCATTTTGCTCTATAATCTC+CGG | - | chr4_3:40739618-40739637 | None:intergenic | 30.0% |
| ! | TTTGGATAAAAAGCATGTTG+CGG | + | chr4_3:40739653-40739672 | Msa0641040:CDS | 30.0% |
| TTTATTTGTGACAGCAACTA+AGG | - | chr4_3:40739772-40739791 | None:intergenic | 30.0% | |
| ATAACCAATGTCTTGAAAAC+TGG | + | chr4_3:40739795-40739814 | Msa0641040:CDS | 30.0% | |
| AAAGGATGACATGAAAACAT+TGG | - | chr4_3:40739895-40739914 | None:intergenic | 30.0% | |
| ! | TTTTAGACAAGAGATGTTGT+TGG | + | chr4_3:40740123-40740142 | Msa0641040:intron | 30.0% |
| !! | TACCATTTAAGTTGCACTTA+TGG | + | chr4_3:40740189-40740208 | Msa0641040:intron | 30.0% |
| !! | ACCATTTAAGTTGCACTTAT+GGG | + | chr4_3:40740190-40740209 | Msa0641040:intron | 30.0% |
| ! | AAAGTCTGGAATTTACAACA+AGG | + | chr4_3:40739437-40739456 | Msa0641040:CDS | 30.0% |
| ! | GATGGTTTTCCATAACAAAA+TGG | - | chr4_3:40739528-40739547 | None:intergenic | 30.0% |
| ! | TCATTTTGCTCTATAATCTC+CGG | - | chr4_3:40739618-40739637 | None:intergenic | 30.0% |
| ! | TTTGGATAAAAAGCATGTTG+CGG | + | chr4_3:40739653-40739672 | Msa0641040:CDS | 30.0% |
| TTTATTTGTGACAGCAACTA+AGG | - | chr4_3:40739772-40739791 | None:intergenic | 30.0% | |
| ATAACCAATGTCTTGAAAAC+TGG | + | chr4_3:40739795-40739814 | Msa0641040:CDS | 30.0% | |
| AAAGGATGACATGAAAACAT+TGG | - | chr4_3:40739895-40739914 | None:intergenic | 30.0% | |
| ! | TTTTAGACAAGAGATGTTGT+TGG | + | chr4_3:40740123-40740142 | Msa0641040:intron | 30.0% |
| !! | TACCATTTAAGTTGCACTTA+TGG | + | chr4_3:40740189-40740208 | Msa0641040:intron | 30.0% |
| !! | ACCATTTAAGTTGCACTTAT+GGG | + | chr4_3:40740190-40740209 | Msa0641040:intron | 30.0% |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | - | chr4_3:40739463-40739482 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | + | chr4_3:40739462-40739481 | Msa0641040:CDS | 35.0% | |
| CTGAGTTAACAACACTTTCA+GGG | + | chr4_3:40739463-40739482 | Msa0641040:CDS | 35.0% | |
| TGAGTTAACAACACTTTCAG+GGG | + | chr4_3:40739464-40739483 | Msa0641040:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | - | chr4_3:40739490-40739509 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | + | chr4_3:40739497-40739516 | Msa0641040:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | - | chr4_3:40739516-40739535 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | + | chr4_3:40739516-40739535 | Msa0641040:CDS | 35.0% |
| GAAGGATGAAAATCCTTCAA+TGG | + | chr4_3:40739575-40739594 | Msa0641040:CDS | 35.0% | |
| TGAAAATCCTTCAATGGAAG+AGG | + | chr4_3:40739581-40739600 | Msa0641040:CDS | 35.0% | |
| ATCATTTCCTCTTCCATTGA+AGG | - | chr4_3:40739591-40739610 | None:intergenic | 35.0% | |
| TTGAAGAAGTTGGAAAGTTC+TGG | + | chr4_3:40739693-40739712 | Msa0641040:CDS | 35.0% | |
| !! | AGTTGGAAAGTTCTGGATAT+TGG | + | chr4_3:40739700-40739719 | Msa0641040:CDS | 35.0% |
| AAGATGTACACATACCATGA+GGG | - | chr4_3:40739833-40739852 | None:intergenic | 35.0% | |
| TGTAGCAATTTCTACCATTG+AGG | + | chr4_3:40739953-40739972 | Msa0641040:intron | 35.0% | |
| AACACCAAAGATCATGAAGT+TGG | + | chr4_3:40740020-40740039 | Msa0641040:CDS | 35.0% | |
| TCCCATAAGTGCAACTTAAA+TGG | - | chr4_3:40740194-40740213 | None:intergenic | 35.0% | |
| AATGTTTGCATGCCTAGTAA+TGG | - | chr4_3:40740246-40740265 | None:intergenic | 35.0% | |
| TGATCCAAAAGGTAAAGGTA+TGG | + | chr4_3:40740341-40740360 | Msa0641040:intron | 35.0% | |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | - | chr4_3:40739463-40739482 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | + | chr4_3:40739462-40739481 | Msa0641040:CDS | 35.0% | |
| CTGAGTTAACAACACTTTCA+GGG | + | chr4_3:40739463-40739482 | Msa0641040:CDS | 35.0% | |
| TGAGTTAACAACACTTTCAG+GGG | + | chr4_3:40739464-40739483 | Msa0641040:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | - | chr4_3:40739490-40739509 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | + | chr4_3:40739497-40739516 | Msa0641040:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | - | chr4_3:40739516-40739535 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | + | chr4_3:40739516-40739535 | Msa0641040:CDS | 35.0% |
| GAAGGATGAAAATCCTTCAA+TGG | + | chr4_3:40739575-40739594 | Msa0641040:CDS | 35.0% | |
| TGAAAATCCTTCAATGGAAG+AGG | + | chr4_3:40739581-40739600 | Msa0641040:CDS | 35.0% | |
| ATCATTTCCTCTTCCATTGA+AGG | - | chr4_3:40739591-40739610 | None:intergenic | 35.0% | |
| TTGAAGAAGTTGGAAAGTTC+TGG | + | chr4_3:40739693-40739712 | Msa0641040:CDS | 35.0% | |
| !! | AGTTGGAAAGTTCTGGATAT+TGG | + | chr4_3:40739700-40739719 | Msa0641040:CDS | 35.0% |
| AAGATGTACACATACCATGA+GGG | - | chr4_3:40739833-40739852 | None:intergenic | 35.0% | |
| TGTAGCAATTTCTACCATTG+AGG | + | chr4_3:40739953-40739972 | Msa0641040:intron | 35.0% | |
| AACACCAAAGATCATGAAGT+TGG | + | chr4_3:40740020-40740039 | Msa0641040:CDS | 35.0% | |
| TCCCATAAGTGCAACTTAAA+TGG | - | chr4_3:40740194-40740213 | None:intergenic | 35.0% | |
| AATGTTTGCATGCCTAGTAA+TGG | - | chr4_3:40740246-40740265 | None:intergenic | 35.0% | |
| TGATCCAAAAGGTAAAGGTA+TGG | + | chr4_3:40740341-40740360 | Msa0641040:intron | 35.0% | |
| ! | TTTCCTCTTGATGACCTCTT+AGG | - | chr4_3:40739354-40739373 | None:intergenic | 40.0% |
| GCATTTACAACGAGAAAGTC+TGG | + | chr4_3:40739423-40739442 | Msa0641040:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | + | chr4_3:40739498-40739517 | Msa0641040:CDS | 40.0% | |
| GGAAGAGGAAATGATGAAAC+CGG | + | chr4_3:40739596-40739615 | Msa0641040:CDS | 40.0% | |
| TGGATATTGGTCGATAACAG+AGG | + | chr4_3:40739713-40739732 | Msa0641040:CDS | 40.0% | |
| ACCAATGTCTTGAAAACTGG+AGG | + | chr4_3:40739798-40739817 | Msa0641040:CDS | 40.0% | |
| !! | TCCTCCAGTTTTCAAGACAT+TGG | - | chr4_3:40739802-40739821 | None:intergenic | 40.0% |
| GAAGATGTACACATACCATG+AGG | - | chr4_3:40739834-40739853 | None:intergenic | 40.0% | |
| TCTACCATTGAGGAACTGAA+TGG | + | chr4_3:40739963-40739982 | Msa0641040:CDS | 40.0% | |
| GTGTTGTCCTCAAAGACATA+AGG | - | chr4_3:40740005-40740024 | None:intergenic | 40.0% | |
| TGCACCAACTTCATGATCTT+TGG | - | chr4_3:40740027-40740046 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | - | chr4_3:40740348-40740367 | None:intergenic | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | + | chr4_3:40740399-40740418 | Msa0641040:CDS | 40.0% | |
| GTCAACCTTATTGGTGTAAG+CGG | + | chr4_3:40740408-40740427 | Msa0641040:CDS | 40.0% | |
| CTATTCCGCTTACACCAATA+AGG | - | chr4_3:40740416-40740435 | None:intergenic | 40.0% | |
| CTTATTGGTGTAAGCGGAAT+AGG | + | chr4_3:40740414-40740433 | Msa0641040:CDS | 40.0% | |
| ! | TTTCCTCTTGATGACCTCTT+AGG | - | chr4_3:40739354-40739373 | None:intergenic | 40.0% |
| GCATTTACAACGAGAAAGTC+TGG | + | chr4_3:40739423-40739442 | Msa0641040:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | + | chr4_3:40739498-40739517 | Msa0641040:CDS | 40.0% | |
| GGAAGAGGAAATGATGAAAC+CGG | + | chr4_3:40739596-40739615 | Msa0641040:CDS | 40.0% | |
| TGGATATTGGTCGATAACAG+AGG | + | chr4_3:40739713-40739732 | Msa0641040:CDS | 40.0% | |
| ACCAATGTCTTGAAAACTGG+AGG | + | chr4_3:40739798-40739817 | Msa0641040:CDS | 40.0% | |
| !! | TCCTCCAGTTTTCAAGACAT+TGG | - | chr4_3:40739802-40739821 | None:intergenic | 40.0% |
| GAAGATGTACACATACCATG+AGG | - | chr4_3:40739834-40739853 | None:intergenic | 40.0% | |
| TCTACCATTGAGGAACTGAA+TGG | + | chr4_3:40739963-40739982 | Msa0641040:CDS | 40.0% | |
| GTGTTGTCCTCAAAGACATA+AGG | - | chr4_3:40740005-40740024 | None:intergenic | 40.0% | |
| TGCACCAACTTCATGATCTT+TGG | - | chr4_3:40740027-40740046 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | - | chr4_3:40740348-40740367 | None:intergenic | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | + | chr4_3:40740399-40740418 | Msa0641040:CDS | 40.0% | |
| GTCAACCTTATTGGTGTAAG+CGG | + | chr4_3:40740408-40740427 | Msa0641040:CDS | 40.0% | |
| CTATTCCGCTTACACCAATA+AGG | - | chr4_3:40740416-40740435 | None:intergenic | 40.0% | |
| CTTATTGGTGTAAGCGGAAT+AGG | + | chr4_3:40740414-40740433 | Msa0641040:CDS | 40.0% | |
| GACTCCATTCAGTTCCTCAA+TGG | - | chr4_3:40739970-40739989 | None:intergenic | 45.0% | |
| GGTGTAAGCGGAATAGGATA+TGG | + | chr4_3:40740420-40740439 | Msa0641040:CDS | 45.0% | |
| AGCGGAATAGGATATGGAAG+TGG | + | chr4_3:40740426-40740445 | Msa0641040:CDS | 45.0% | |
| GACTCCATTCAGTTCCTCAA+TGG | - | chr4_3:40739970-40739989 | None:intergenic | 45.0% | |
| GGTGTAAGCGGAATAGGATA+TGG | + | chr4_3:40740420-40740439 | Msa0641040:CDS | 45.0% | |
| AGCGGAATAGGATATGGAAG+TGG | + | chr4_3:40740426-40740445 | Msa0641040:CDS | 45.0% | |
| GCGCCTAAGAGGTCATCAAG+AGG | + | chr4_3:40739348-40739367 | Msa0641040:CDS | 55.0% | |
| GGAGGAGAGATTGACCCTCA+TGG | + | chr4_3:40739816-40739835 | Msa0641040:CDS | 55.0% | |
| GCGCCTAAGAGGTCATCAAG+AGG | + | chr4_3:40739348-40739367 | Msa0641040:CDS | 55.0% | |
| GGAGGAGAGATTGACCCTCA+TGG | + | chr4_3:40739816-40739835 | Msa0641040:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 40739345 | 40740476 | 40739345 | ID=Msa0641040;Name=Msa0641040 |
| chr4_3 | mRNA | 40739345 | 40740476 | 40739345 | ID=Msa0641040-mRNA-1;Parent=Msa0641040;Name=Msa0641040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|235 |
| chr4_3 | exon | 40739345 | 40739837 | 40739345 | ID=Msa0641040-mRNA-1:exon:9169;Parent=Msa0641040-mRNA-1 |
| chr4_3 | exon | 40739958 | 40740047 | 40739958 | ID=Msa0641040-mRNA-1:exon:9170;Parent=Msa0641040-mRNA-1 |
| chr4_3 | exon | 40740352 | 40740476 | 40740352 | ID=Msa0641040-mRNA-1:exon:9171;Parent=Msa0641040-mRNA-1 |
| chr4_3 | CDS | 40739345 | 40739837 | 40739345 | ID=Msa0641040-mRNA-1:cds;Parent=Msa0641040-mRNA-1 |
| chr4_3 | CDS | 40739958 | 40740047 | 40739958 | ID=Msa0641040-mRNA-1:cds;Parent=Msa0641040-mRNA-1 |
| chr4_3 | CDS | 40740352 | 40740476 | 40740352 | ID=Msa0641040-mRNA-1:cds;Parent=Msa0641040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
