Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642290 | KAH1104382.1 | 45.918 | 196 | 51 | 6 | 1 | 143 | 1 | 194 | 1.13e-41 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642290 | sp|Q8LJS2|HDT1_SOYBN | 57.303 | 89 | 38 | 0 | 1 | 89 | 1 | 89 | 1.83e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642290 | A0A072VB01 | 61.017 | 59 | 19 | 2 | 89 | 143 | 221 | 279 | 7.96e-11 | 69.3 |
| Msa0642290 | A0A072VB01 | 74.725 | 91 | 23 | 0 | 1 | 91 | 1 | 91 | 4.66e-38 | 141 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0642290 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642290 | MtrunA17_Chr2g0320884 | 69.072 | 97 | 30 | 0 | 1 | 97 | 35 | 131 | 4.51e-39 | 135 |
| Msa0642290 | MtrunA17_Chr2g0320884 | 61.017 | 59 | 19 | 2 | 89 | 143 | 271 | 329 | 1.72e-14 | 69.7 |
| Msa0642290 | MtrunA17_Chr4g0027191 | 52.577 | 97 | 46 | 0 | 2 | 98 | 6 | 102 | 6.47e-26 | 101 |
| Msa0642290 | MtrunA17_Chr4g0027181 | 48.980 | 98 | 50 | 0 | 1 | 98 | 5 | 102 | 1.40e-25 | 99.0 |
| Msa0642290 | MtrunA17_Chr7g0265761 | 46.512 | 86 | 44 | 1 | 1 | 86 | 1 | 84 | 2.29e-20 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642290 | AT5G03740.1 | 42.169 | 83 | 45 | 2 | 1 | 83 | 1 | 80 | 2.01e-16 | 75.1 |
| Msa0642290 | AT5G22650.2 | 42.697 | 89 | 47 | 2 | 1 | 89 | 1 | 85 | 1.19e-15 | 73.2 |
| Msa0642290 | AT5G22650.1 | 42.697 | 89 | 47 | 2 | 1 | 89 | 1 | 85 | 1.23e-15 | 73.2 |
| Msa0642290 | AT3G44750.2 | 42.169 | 83 | 45 | 2 | 1 | 83 | 1 | 80 | 2.53e-13 | 65.9 |
| Msa0642290 | AT3G44750.1 | 42.169 | 83 | 45 | 2 | 1 | 83 | 1 | 80 | 2.61e-13 | 65.9 |
Find 38 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCGTTTCCAATGGAGTTT+TGG | 0.171376 | 4_3:+43766602 | None:intergenic |
| GTGGTTATTTACCTCGTATT+TGG | 0.275316 | 4_3:+43767088 | Msa0642290:CDS |
| GAAATAAACACTCGCAGTTT+TGG | 0.276973 | 4_3:-43767209 | None:intergenic |
| AGGACATTCACCTCTGAAAA+TGG | 0.285743 | 4_3:+43767983 | Msa0642290:intron |
| TAAATAACCACAGGCTCTTC+TGG | 0.321440 | 4_3:-43767076 | None:intergenic |
| GAAGTTTCAGCATCATTGTT+AGG | 0.324985 | 4_3:-43767836 | None:intergenic |
| TGGTGGCCAGAAGATTGTTT+TGG | 0.336064 | 4_3:+43767108 | Msa0642290:CDS |
| TGAATTAGCTGCCGAGGTTA+AGG | 0.369389 | 4_3:+43766845 | Msa0642290:intron |
| AAGCATACCTGCTGCAATTA+CGG | 0.369962 | 4_3:-43767880 | None:intergenic |
| TGGATTGCAAGAACATATAA+AGG | 0.382037 | 4_3:+43768003 | Msa0642290:CDS |
| AGGTTCCCAAAACAATCTTC+TGG | 0.382371 | 4_3:-43767114 | None:intergenic |
| GCACTTGGCGCAGCAAATAA+AGG | 0.387444 | 4_3:+43767049 | Msa0642290:CDS |
| TTAGGACCTTTCTTAGAGTC+AGG | 0.425080 | 4_3:-43767818 | None:intergenic |
| GATGCTGAAACTTCCAAGTC+TGG | 0.441612 | 4_3:+43767845 | Msa0642290:CDS |
| AGCAGCTATTCACATTTCTC+AGG | 0.458967 | 4_3:+43766908 | Msa0642290:CDS |
| TTGTTAGATTCTGAGAAAGC+TGG | 0.482257 | 4_3:+43767782 | Msa0642290:intron |
| GCAAGAGAGTCCTCCAGACT+TGG | 0.490554 | 4_3:-43767858 | None:intergenic |
| GTTATTTACCTCGTATTTGG+TGG | 0.494314 | 4_3:+43767091 | Msa0642290:CDS |
| GAGTCCTCTAGCAGCATGCT+TGG | 0.518176 | 4_3:-43768026 | None:intergenic |
| GCTGCTGCATCATGGGCATA+CGG | 0.519271 | 4_3:-43766891 | None:intergenic |
| GCAATTCCTGACTCTAAGAA+AGG | 0.524303 | 4_3:+43767812 | Msa0642290:CDS |
| CTGCTGCATCATGGGCATAC+GGG | 0.528977 | 4_3:-43766890 | None:intergenic |
| ACTTCACTTAGTAGCATGCT+TGG | 0.535966 | 4_3:-43768205 | None:intergenic |
| TCTCTTGCCGTAATTGCAGC+AGG | 0.544962 | 4_3:+43767873 | Msa0642290:CDS |
| GTGAATAGCTGCTGCATCAT+GGG | 0.548035 | 4_3:-43766898 | None:intergenic |
| TTAGCTGCCGAGGTTAAGGT+TGG | 0.554128 | 4_3:+43766849 | Msa0642290:intron |
| TGTGAATAGCTGCTGCATCA+TGG | 0.561080 | 4_3:-43766899 | None:intergenic |
| AGGTTACCCCAAAACTCCAT+TGG | 0.577427 | 4_3:-43766610 | None:intergenic |
| AAGGCCAAGCATGCTGCTAG+AGG | 0.601545 | 4_3:+43768022 | Msa0642290:CDS |
| AGTTTCTCCAACCTTAACCT+CGG | 0.624909 | 4_3:-43766856 | None:intergenic |
| GATCTTTGAATTAGCTGCCG+AGG | 0.634911 | 4_3:+43766839 | Msa0642290:intron |
| TGCATTGCAAGAACATAACA+AGG | 0.638959 | 4_3:+43768182 | Msa0642290:CDS |
| AATACGAGGTAAATAACCAC+AGG | 0.651072 | 4_3:-43767085 | None:intergenic |
| ATATTATTAAAAGTTATCTG+AGG | 0.654039 | 4_3:-43767154 | None:intergenic |
| GCTGAAACTTCCAAGTCTGG+AGG | 0.660898 | 4_3:+43767848 | Msa0642290:CDS |
| TCTGTTGCAGAAGTTGCAAG+AGG | 0.682206 | 4_3:+43768047 | Msa0642290:CDS |
| TCTTCTGGCCACCAAATACG+AGG | 0.688955 | 4_3:-43767099 | None:intergenic |
| AGGCATACCAGAAGAGCCTG+TGG | 0.689406 | 4_3:+43767069 | Msa0642290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATAATATTCTTGAAA+AGG | + | chr4_3:43767165-43767184 | Msa0642290:CDS | 10.0% |
| !!! | ATATATTTATTACTTTTAGA+TGG | + | chr4_3:43767920-43767939 | Msa0642290:intron | 10.0% |
| !!! | TATATTTATTACTTTTAGAT+GGG | + | chr4_3:43767921-43767940 | Msa0642290:intron | 10.0% |
| !! | ATAAATATAAATATATGCTT+CGG | - | chr4_3:43768090-43768109 | None:intergenic | 10.0% |
| !!! | TTATATTTATTACTTTTAGA+TGG | + | chr4_3:43768100-43768119 | Msa0642290:intron | 10.0% |
| !!! | TATATTTATTACTTTTAGAT+GGG | + | chr4_3:43767921-43767940 | Msa0642290:intron | 10.0% |
| !!! | TTTTAATAATATTCTTGAAA+AGG | + | chr4_3:43767165-43767184 | Msa0642290:CDS | 10.0% |
| !!! | ATATATTTATTACTTTTAGA+TGG | + | chr4_3:43767920-43767939 | Msa0642290:intron | 10.0% |
| !!! | TATATTTATTACTTTTAGAT+GGG | + | chr4_3:43767921-43767940 | Msa0642290:intron | 10.0% |
| !! | ATAAATATAAATATATGCTT+CGG | - | chr4_3:43768090-43768109 | None:intergenic | 10.0% |
| !!! | TTATATTTATTACTTTTAGA+TGG | + | chr4_3:43768100-43768119 | Msa0642290:intron | 10.0% |
| !!! | TATATTTATTACTTTTAGAT+GGG | + | chr4_3:43767921-43767940 | Msa0642290:intron | 10.0% |
| !! | ATATTATTAAAAGTTATCTG+AGG | - | chr4_3:43767157-43767176 | None:intergenic | 15.0% |
| !! | AAAAATTTAAGCACAAATTA+CGG | - | chr4_3:43767764-43767783 | None:intergenic | 15.0% |
| !! | AAAGTAATAAATATATGCTT+CGG | - | chr4_3:43767916-43767935 | None:intergenic | 15.0% |
| !! | TAAATATAAATATATGCTTC+GGG | - | chr4_3:43768089-43768108 | None:intergenic | 15.0% |
| !! | ATATTATTAAAAGTTATCTG+AGG | - | chr4_3:43767157-43767176 | None:intergenic | 15.0% |
| !! | AAAAATTTAAGCACAAATTA+CGG | - | chr4_3:43767764-43767783 | None:intergenic | 15.0% |
| !! | AAAGTAATAAATATATGCTT+CGG | - | chr4_3:43767916-43767935 | None:intergenic | 15.0% |
| !! | TAAATATAAATATATGCTTC+GGG | - | chr4_3:43768089-43768108 | None:intergenic | 15.0% |
| !! | TAATAAATAAGTCTCAACTA+AGG | - | chr4_3:43767262-43767281 | None:intergenic | 20.0% |
| !!! | TTGTCATACAATTGTTTTTA+AGG | + | chr4_3:43767426-43767445 | Msa0642290:intron | 20.0% |
| !!! | TTGTTTTTAAGGTTAGATTA+AGG | + | chr4_3:43767437-43767456 | Msa0642290:intron | 20.0% |
| !! | AAGTAATAAATATATGCTTC+GGG | - | chr4_3:43767915-43767934 | None:intergenic | 20.0% |
| !! | AAAGACAACAAAAAAAAGAA+AGG | - | chr4_3:43767957-43767976 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTCTTTATTACT+AGG | + | chr4_3:43767963-43767982 | Msa0642290:intron | 20.0% |
| !! | TAAAGACATGAAAAAAAGAA+AGG | - | chr4_3:43768137-43768156 | None:intergenic | 20.0% |
| !! | TAATAAATAAGTCTCAACTA+AGG | - | chr4_3:43767262-43767281 | None:intergenic | 20.0% |
| !!! | TTGTCATACAATTGTTTTTA+AGG | + | chr4_3:43767426-43767445 | Msa0642290:intron | 20.0% |
| !!! | TTGTTTTTAAGGTTAGATTA+AGG | + | chr4_3:43767437-43767456 | Msa0642290:intron | 20.0% |
| !! | AAGTAATAAATATATGCTTC+GGG | - | chr4_3:43767915-43767934 | None:intergenic | 20.0% |
| !! | AAAGACAACAAAAAAAAGAA+AGG | - | chr4_3:43767957-43767976 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTCTTTATTACT+AGG | + | chr4_3:43767963-43767982 | Msa0642290:intron | 20.0% |
| !! | TAAAGACATGAAAAAAAGAA+AGG | - | chr4_3:43768137-43768156 | None:intergenic | 20.0% |
| !! | TCTTAACTATTGATGTGTTT+TGG | + | chr4_3:43767358-43767377 | Msa0642290:intron | 25.0% |
| ! | TATCTAACACAATTTAAGCA+AGG | - | chr4_3:43767495-43767514 | None:intergenic | 25.0% |
| !!! | AATTTAGCTTGTTTGCATTA+TGG | + | chr4_3:43767550-43767569 | Msa0642290:intron | 25.0% |
| ! | TCAAACAACGTTTCAATTTA+CGG | - | chr4_3:43767666-43767685 | None:intergenic | 25.0% |
| !! | TTTTTCATGTCTTTATTACC+AGG | + | chr4_3:43768142-43768161 | Msa0642290:intron | 25.0% |
| !! | TCTTAACTATTGATGTGTTT+TGG | + | chr4_3:43767358-43767377 | Msa0642290:intron | 25.0% |
| ! | TATCTAACACAATTTAAGCA+AGG | - | chr4_3:43767495-43767514 | None:intergenic | 25.0% |
| !!! | AATTTAGCTTGTTTGCATTA+TGG | + | chr4_3:43767550-43767569 | Msa0642290:intron | 25.0% |
| ! | TCAAACAACGTTTCAATTTA+CGG | - | chr4_3:43767666-43767685 | None:intergenic | 25.0% |
| !! | TTTTTCATGTCTTTATTACC+AGG | + | chr4_3:43768142-43768161 | Msa0642290:intron | 25.0% |
| ATGATGAAAGGAGAAATATG+AGG | - | chr4_3:43766633-43766652 | None:intergenic | 30.0% | |
| GAAGAAAAGTAGATGATGAA+AGG | - | chr4_3:43766645-43766664 | None:intergenic | 30.0% | |
| TATTCACATTTCTCAGGTTA+GGG | + | chr4_3:43766914-43766933 | Msa0642290:intron | 30.0% | |
| !!! | TGCTGCTTTGGTTATTTTAT+AGG | + | chr4_3:43767024-43767043 | Msa0642290:intron | 30.0% |
| !! | GTTATTTTATAGGTAGCACT+TGG | + | chr4_3:43767034-43767053 | Msa0642290:intron | 30.0% |
| CAAACAACGTTTCAATTTAC+GGG | - | chr4_3:43767665-43767684 | None:intergenic | 30.0% | |
| TGGATTGCAAGAACATATAA+AGG | + | chr4_3:43768003-43768022 | Msa0642290:CDS | 30.0% | |
| ATGATGAAAGGAGAAATATG+AGG | - | chr4_3:43766633-43766652 | None:intergenic | 30.0% | |
| GAAGAAAAGTAGATGATGAA+AGG | - | chr4_3:43766645-43766664 | None:intergenic | 30.0% | |
| TATTCACATTTCTCAGGTTA+GGG | + | chr4_3:43766914-43766933 | Msa0642290:intron | 30.0% | |
| !!! | TGCTGCTTTGGTTATTTTAT+AGG | + | chr4_3:43767024-43767043 | Msa0642290:intron | 30.0% |
| !! | GTTATTTTATAGGTAGCACT+TGG | + | chr4_3:43767034-43767053 | Msa0642290:intron | 30.0% |
| CAAACAACGTTTCAATTTAC+GGG | - | chr4_3:43767665-43767684 | None:intergenic | 30.0% | |
| TGGATTGCAAGAACATATAA+AGG | + | chr4_3:43768003-43768022 | Msa0642290:CDS | 30.0% | |
| CTATTCACATTTCTCAGGTT+AGG | + | chr4_3:43766913-43766932 | Msa0642290:intron | 35.0% | |
| !! | GTTGTGTGTTTTTGTGTCTA+GGG | + | chr4_3:43766991-43767010 | Msa0642290:intron | 35.0% |
| ! | GGTTTACTAAATTGCTGCTT+TGG | + | chr4_3:43767012-43767031 | Msa0642290:intron | 35.0% |
| AATACGAGGTAAATAACCAC+AGG | - | chr4_3:43767088-43767107 | None:intergenic | 35.0% | |
| GTGGTTATTTACCTCGTATT+TGG | + | chr4_3:43767088-43767107 | Msa0642290:CDS | 35.0% | |
| GTTATTTACCTCGTATTTGG+TGG | + | chr4_3:43767091-43767110 | Msa0642290:CDS | 35.0% | |
| !!! | TTGTTTTGGGAACCTTAATC+AGG | + | chr4_3:43767122-43767141 | Msa0642290:CDS | 35.0% |
| !!! | TGTTTTGGGAACCTTAATCA+GGG | + | chr4_3:43767123-43767142 | Msa0642290:CDS | 35.0% |
| ! | AGGAATTTTGTCCCTGATTA+AGG | - | chr4_3:43767137-43767156 | None:intergenic | 35.0% |
| ! | GAAATAAACACTCGCAGTTT+TGG | - | chr4_3:43767212-43767231 | None:intergenic | 35.0% |
| AGGTTAGATTAAGGTTGTGT+TGG | + | chr4_3:43767446-43767465 | Msa0642290:intron | 35.0% | |
| GTTGTTTGAATGTTGCATTG+AGG | + | chr4_3:43767677-43767696 | Msa0642290:intron | 35.0% | |
| AATTACGGATGTGTAACAGA+AGG | - | chr4_3:43767749-43767768 | None:intergenic | 35.0% | |
| ! | TTGTTAGATTCTGAGAAAGC+TGG | + | chr4_3:43767782-43767801 | Msa0642290:intron | 35.0% |
| GAAGTTTCAGCATCATTGTT+AGG | - | chr4_3:43767839-43767858 | None:intergenic | 35.0% | |
| ! | TTCTTGCAATCCATTTTCAG+AGG | - | chr4_3:43767996-43768015 | None:intergenic | 35.0% |
| ! | TTCTTGCAATGCATTTTCAG+AGG | - | chr4_3:43768175-43768194 | None:intergenic | 35.0% |
| TGCATTGCAAGAACATAACA+AGG | + | chr4_3:43768182-43768201 | Msa0642290:CDS | 35.0% | |
| CTATTCACATTTCTCAGGTT+AGG | + | chr4_3:43766913-43766932 | Msa0642290:intron | 35.0% | |
| !! | GTTGTGTGTTTTTGTGTCTA+GGG | + | chr4_3:43766991-43767010 | Msa0642290:intron | 35.0% |
| ! | GGTTTACTAAATTGCTGCTT+TGG | + | chr4_3:43767012-43767031 | Msa0642290:intron | 35.0% |
| AATACGAGGTAAATAACCAC+AGG | - | chr4_3:43767088-43767107 | None:intergenic | 35.0% | |
| GTGGTTATTTACCTCGTATT+TGG | + | chr4_3:43767088-43767107 | Msa0642290:CDS | 35.0% | |
| GTTATTTACCTCGTATTTGG+TGG | + | chr4_3:43767091-43767110 | Msa0642290:CDS | 35.0% | |
| !!! | TTGTTTTGGGAACCTTAATC+AGG | + | chr4_3:43767122-43767141 | Msa0642290:CDS | 35.0% |
| !!! | TGTTTTGGGAACCTTAATCA+GGG | + | chr4_3:43767123-43767142 | Msa0642290:CDS | 35.0% |
| ! | AGGAATTTTGTCCCTGATTA+AGG | - | chr4_3:43767137-43767156 | None:intergenic | 35.0% |
| ! | GAAATAAACACTCGCAGTTT+TGG | - | chr4_3:43767212-43767231 | None:intergenic | 35.0% |
| AGGTTAGATTAAGGTTGTGT+TGG | + | chr4_3:43767446-43767465 | Msa0642290:intron | 35.0% | |
| GTTGTTTGAATGTTGCATTG+AGG | + | chr4_3:43767677-43767696 | Msa0642290:intron | 35.0% | |
| AATTACGGATGTGTAACAGA+AGG | - | chr4_3:43767749-43767768 | None:intergenic | 35.0% | |
| ! | TTGTTAGATTCTGAGAAAGC+TGG | + | chr4_3:43767782-43767801 | Msa0642290:intron | 35.0% |
| GAAGTTTCAGCATCATTGTT+AGG | - | chr4_3:43767839-43767858 | None:intergenic | 35.0% | |
| ! | TTCTTGCAATCCATTTTCAG+AGG | - | chr4_3:43767996-43768015 | None:intergenic | 35.0% |
| ! | TTCTTGCAATGCATTTTCAG+AGG | - | chr4_3:43768175-43768194 | None:intergenic | 35.0% |
| TGCATTGCAAGAACATAACA+AGG | + | chr4_3:43768182-43768201 | Msa0642290:CDS | 35.0% | |
| TGTACGTACGTACGTGTATT+AGG | + | chr4_3:43766787-43766806 | Msa0642290:intron | 40.0% | |
| AGTTTCTCCAACCTTAACCT+CGG | - | chr4_3:43766859-43766878 | None:intergenic | 40.0% | |
| AGCAGCTATTCACATTTCTC+AGG | + | chr4_3:43766908-43766927 | Msa0642290:CDS | 40.0% | |
| !! | CGTTGTGTGTTTTTGTGTCT+AGG | + | chr4_3:43766990-43767009 | Msa0642290:intron | 40.0% |
| TAAATAACCACAGGCTCTTC+TGG | - | chr4_3:43767079-43767098 | None:intergenic | 40.0% | |
| AGGTTCCCAAAACAATCTTC+TGG | - | chr4_3:43767117-43767136 | None:intergenic | 40.0% | |
| ACTGCGAGTGTTTATTTCAG+TGG | + | chr4_3:43767214-43767233 | Msa0642290:intron | 40.0% | |
| AACGTTTCAATTTACGGGTG+GGG | - | chr4_3:43767660-43767679 | None:intergenic | 40.0% | |
| CAACGTTTCAATTTACGGGT+GGG | - | chr4_3:43767661-43767680 | None:intergenic | 40.0% | |
| ACAACGTTTCAATTTACGGG+TGG | - | chr4_3:43767662-43767681 | None:intergenic | 40.0% | |
| ! | GCAATTCCTGACTCTAAGAA+AGG | + | chr4_3:43767812-43767831 | Msa0642290:CDS | 40.0% |
| TTAGGACCTTTCTTAGAGTC+AGG | - | chr4_3:43767821-43767840 | None:intergenic | 40.0% | |
| AAGCATACCTGCTGCAATTA+CGG | - | chr4_3:43767883-43767902 | None:intergenic | 40.0% | |
| ! | AGGACATTCACCTCTGAAAA+TGG | + | chr4_3:43767983-43768002 | Msa0642290:intron | 40.0% |
| ! | ATTTTCAGAGGTGAATGTCC+TGG | - | chr4_3:43767984-43768003 | None:intergenic | 40.0% |
| TGTACGTACGTACGTGTATT+AGG | + | chr4_3:43766787-43766806 | Msa0642290:intron | 40.0% | |
| AGTTTCTCCAACCTTAACCT+CGG | - | chr4_3:43766859-43766878 | None:intergenic | 40.0% | |
| AGCAGCTATTCACATTTCTC+AGG | + | chr4_3:43766908-43766927 | Msa0642290:CDS | 40.0% | |
| !! | CGTTGTGTGTTTTTGTGTCT+AGG | + | chr4_3:43766990-43767009 | Msa0642290:intron | 40.0% |
| TAAATAACCACAGGCTCTTC+TGG | - | chr4_3:43767079-43767098 | None:intergenic | 40.0% | |
| AGGTTCCCAAAACAATCTTC+TGG | - | chr4_3:43767117-43767136 | None:intergenic | 40.0% | |
| ACTGCGAGTGTTTATTTCAG+TGG | + | chr4_3:43767214-43767233 | Msa0642290:intron | 40.0% | |
| AACGTTTCAATTTACGGGTG+GGG | - | chr4_3:43767660-43767679 | None:intergenic | 40.0% | |
| CAACGTTTCAATTTACGGGT+GGG | - | chr4_3:43767661-43767680 | None:intergenic | 40.0% | |
| ACAACGTTTCAATTTACGGG+TGG | - | chr4_3:43767662-43767681 | None:intergenic | 40.0% | |
| ! | GCAATTCCTGACTCTAAGAA+AGG | + | chr4_3:43767812-43767831 | Msa0642290:CDS | 40.0% |
| TTAGGACCTTTCTTAGAGTC+AGG | - | chr4_3:43767821-43767840 | None:intergenic | 40.0% | |
| AAGCATACCTGCTGCAATTA+CGG | - | chr4_3:43767883-43767902 | None:intergenic | 40.0% | |
| ! | AGGACATTCACCTCTGAAAA+TGG | + | chr4_3:43767983-43768002 | Msa0642290:intron | 40.0% |
| ! | ATTTTCAGAGGTGAATGTCC+TGG | - | chr4_3:43767984-43768003 | None:intergenic | 40.0% |
| GATCTTTGAATTAGCTGCCG+AGG | + | chr4_3:43766839-43766858 | Msa0642290:intron | 45.0% | |
| TGAATTAGCTGCCGAGGTTA+AGG | + | chr4_3:43766845-43766864 | Msa0642290:intron | 45.0% | |
| GTGAATAGCTGCTGCATCAT+GGG | - | chr4_3:43766901-43766920 | None:intergenic | 45.0% | |
| TGTGAATAGCTGCTGCATCA+TGG | - | chr4_3:43766902-43766921 | None:intergenic | 45.0% | |
| ! | TGGTGGCCAGAAGATTGTTT+TGG | + | chr4_3:43767108-43767127 | Msa0642290:CDS | 45.0% |
| ! | GGTGGCCAGAAGATTGTTTT+GGG | + | chr4_3:43767109-43767128 | Msa0642290:CDS | 45.0% |
| AGTGAGGAAGAAGGTGAAAC+TGG | + | chr4_3:43767389-43767408 | Msa0642290:intron | 45.0% | |
| GATGCTGAAACTTCCAAGTC+TGG | + | chr4_3:43767845-43767864 | Msa0642290:CDS | 45.0% | |
| TCTGTTGCAGAAGTTGCAAG+AGG | + | chr4_3:43768047-43768066 | Msa0642290:CDS | 45.0% | |
| GATCTTTGAATTAGCTGCCG+AGG | + | chr4_3:43766839-43766858 | Msa0642290:intron | 45.0% | |
| TGAATTAGCTGCCGAGGTTA+AGG | + | chr4_3:43766845-43766864 | Msa0642290:intron | 45.0% | |
| GTGAATAGCTGCTGCATCAT+GGG | - | chr4_3:43766901-43766920 | None:intergenic | 45.0% | |
| TGTGAATAGCTGCTGCATCA+TGG | - | chr4_3:43766902-43766921 | None:intergenic | 45.0% | |
| ! | TGGTGGCCAGAAGATTGTTT+TGG | + | chr4_3:43767108-43767127 | Msa0642290:CDS | 45.0% |
| ! | GGTGGCCAGAAGATTGTTTT+GGG | + | chr4_3:43767109-43767128 | Msa0642290:CDS | 45.0% |
| AGTGAGGAAGAAGGTGAAAC+TGG | + | chr4_3:43767389-43767408 | Msa0642290:intron | 45.0% | |
| GATGCTGAAACTTCCAAGTC+TGG | + | chr4_3:43767845-43767864 | Msa0642290:CDS | 45.0% | |
| TCTGTTGCAGAAGTTGCAAG+AGG | + | chr4_3:43768047-43768066 | Msa0642290:CDS | 45.0% | |
| !! | TATATATATATATCTATATA+TGG | - | chr4_3:43767723-43767742 | None:intergenic | 5.0% |
| !! | TATATATATATATCTATATA+TGG | - | chr4_3:43767723-43767742 | None:intergenic | 5.0% |
| TTAGCTGCCGAGGTTAAGGT+TGG | + | chr4_3:43766849-43766868 | Msa0642290:intron | 50.0% | |
| GCACTTGGCGCAGCAAATAA+AGG | + | chr4_3:43767049-43767068 | Msa0642290:CDS | 50.0% | |
| TCTTCTGGCCACCAAATACG+AGG | - | chr4_3:43767102-43767121 | None:intergenic | 50.0% | |
| GGAAGAAGGTGAAACTGGTG+AGG | + | chr4_3:43767394-43767413 | Msa0642290:intron | 50.0% | |
| GCTGAAACTTCCAAGTCTGG+AGG | + | chr4_3:43767848-43767867 | Msa0642290:CDS | 50.0% | |
| TCTCTTGCCGTAATTGCAGC+AGG | + | chr4_3:43767873-43767892 | Msa0642290:CDS | 50.0% | |
| TTAGCTGCCGAGGTTAAGGT+TGG | + | chr4_3:43766849-43766868 | Msa0642290:intron | 50.0% | |
| GCACTTGGCGCAGCAAATAA+AGG | + | chr4_3:43767049-43767068 | Msa0642290:CDS | 50.0% | |
| TCTTCTGGCCACCAAATACG+AGG | - | chr4_3:43767102-43767121 | None:intergenic | 50.0% | |
| GGAAGAAGGTGAAACTGGTG+AGG | + | chr4_3:43767394-43767413 | Msa0642290:intron | 50.0% | |
| GCTGAAACTTCCAAGTCTGG+AGG | + | chr4_3:43767848-43767867 | Msa0642290:CDS | 50.0% | |
| TCTCTTGCCGTAATTGCAGC+AGG | + | chr4_3:43767873-43767892 | Msa0642290:CDS | 50.0% | |
| CTGCTGCATCATGGGCATAC+GGG | - | chr4_3:43766893-43766912 | None:intergenic | 55.0% | |
| GCTGCTGCATCATGGGCATA+CGG | - | chr4_3:43766894-43766913 | None:intergenic | 55.0% | |
| AGGCATACCAGAAGAGCCTG+TGG | + | chr4_3:43767069-43767088 | Msa0642290:CDS | 55.0% | |
| !!! | TGTTTTGGCCTGCACGAGTG+AGG | + | chr4_3:43767373-43767392 | Msa0642290:intron | 55.0% |
| ACCTTCTTCCTCACTCGTGC+AGG | - | chr4_3:43767384-43767403 | None:intergenic | 55.0% | |
| GCAAGAGAGTCCTCCAGACT+TGG | - | chr4_3:43767861-43767880 | None:intergenic | 55.0% | |
| AAGGCCAAGCATGCTGCTAG+AGG | + | chr4_3:43768022-43768041 | Msa0642290:CDS | 55.0% | |
| GAGTCCTCTAGCAGCATGCT+TGG | - | chr4_3:43768029-43768048 | None:intergenic | 55.0% | |
| CTGCTGCATCATGGGCATAC+GGG | - | chr4_3:43766893-43766912 | None:intergenic | 55.0% | |
| GCTGCTGCATCATGGGCATA+CGG | - | chr4_3:43766894-43766913 | None:intergenic | 55.0% | |
| AGGCATACCAGAAGAGCCTG+TGG | + | chr4_3:43767069-43767088 | Msa0642290:CDS | 55.0% | |
| !!! | TGTTTTGGCCTGCACGAGTG+AGG | + | chr4_3:43767373-43767392 | Msa0642290:intron | 55.0% |
| ACCTTCTTCCTCACTCGTGC+AGG | - | chr4_3:43767384-43767403 | None:intergenic | 55.0% | |
| GCAAGAGAGTCCTCCAGACT+TGG | - | chr4_3:43767861-43767880 | None:intergenic | 55.0% | |
| AAGGCCAAGCATGCTGCTAG+AGG | + | chr4_3:43768022-43768041 | Msa0642290:CDS | 55.0% | |
| GAGTCCTCTAGCAGCATGCT+TGG | - | chr4_3:43768029-43768048 | None:intergenic | 55.0% | |
| GCCTGCACGAGTGAGGAAGA+AGG | + | chr4_3:43767380-43767399 | Msa0642290:intron | 60.0% | |
| GCCTGCACGAGTGAGGAAGA+AGG | + | chr4_3:43767380-43767399 | Msa0642290:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 43766613 | 43768224 | 43766613 | ID=Msa0642290;Name=Msa0642290 |
| chr4_3 | mRNA | 43766613 | 43768224 | 43766613 | ID=Msa0642290-mRNA-1;Parent=Msa0642290;Name=Msa0642290-mRNA-1;_AED=0.28;_eAED=0.29;_QI=0|0|0|0.66|1|1|6|0|171 |
| chr4_3 | exon | 43766613 | 43766625 | 43766613 | ID=Msa0642290-mRNA-1:exon:9969;Parent=Msa0642290-mRNA-1 |
| chr4_3 | exon | 43766853 | 43766929 | 43766853 | ID=Msa0642290-mRNA-1:exon:9970;Parent=Msa0642290-mRNA-1 |
| chr4_3 | exon | 43767046 | 43767220 | 43767046 | ID=Msa0642290-mRNA-1:exon:9971;Parent=Msa0642290-mRNA-1 |
| chr4_3 | exon | 43767789 | 43767894 | 43767789 | ID=Msa0642290-mRNA-1:exon:9972;Parent=Msa0642290-mRNA-1 |
| chr4_3 | exon | 43767985 | 43768068 | 43767985 | ID=Msa0642290-mRNA-1:exon:9973;Parent=Msa0642290-mRNA-1 |
| chr4_3 | exon | 43768164 | 43768224 | 43768164 | ID=Msa0642290-mRNA-1:exon:9974;Parent=Msa0642290-mRNA-1 |
| chr4_3 | CDS | 43766613 | 43766625 | 43766613 | ID=Msa0642290-mRNA-1:cds;Parent=Msa0642290-mRNA-1 |
| chr4_3 | CDS | 43766853 | 43766929 | 43766853 | ID=Msa0642290-mRNA-1:cds;Parent=Msa0642290-mRNA-1 |
| chr4_3 | CDS | 43767046 | 43767220 | 43767046 | ID=Msa0642290-mRNA-1:cds;Parent=Msa0642290-mRNA-1 |
| chr4_3 | CDS | 43767789 | 43767894 | 43767789 | ID=Msa0642290-mRNA-1:cds;Parent=Msa0642290-mRNA-1 |
| chr4_3 | CDS | 43767985 | 43768068 | 43767985 | ID=Msa0642290-mRNA-1:cds;Parent=Msa0642290-mRNA-1 |
| chr4_3 | CDS | 43768164 | 43768224 | 43768164 | ID=Msa0642290-mRNA-1:cds;Parent=Msa0642290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
