Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642660 | XP_003606327.1 | 91.837 | 294 | 23 | 1 | 1 | 294 | 1 | 293 | 8.26e-164 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642660 | sp|Q681X4|ZAT5_ARATH | 39.875 | 321 | 105 | 9 | 17 | 294 | 11 | 286 | 1.43e-54 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642660 | G7JN94 | 91.837 | 294 | 23 | 1 | 1 | 294 | 1 | 293 | 3.94e-164 | 467 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0642660 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642660 | MtrunA17_Chr4g0027991 | 91.837 | 294 | 23 | 1 | 1 | 294 | 1 | 293 | 7.60e-168 | 467 |
| Msa0642660 | MtrunA17_Chr2g0320311 | 43.987 | 316 | 102 | 10 | 17 | 294 | 19 | 297 | 2.76e-65 | 206 |
| Msa0642660 | MtrunA17_Chr1g0197281 | 37.666 | 377 | 115 | 14 | 8 | 294 | 9 | 355 | 9.22e-60 | 194 |
| Msa0642660 | MtrunA17_Chr1g0180311 | 36.335 | 322 | 146 | 13 | 5 | 294 | 3 | 297 | 2.57e-49 | 165 |
| Msa0642660 | MtrunA17_Chr1g0182161 | 39.286 | 168 | 40 | 5 | 113 | 268 | 39 | 156 | 1.34e-25 | 100 |
| Msa0642660 | MtrunA17_Chr7g0263121 | 38.037 | 163 | 46 | 4 | 113 | 268 | 44 | 158 | 5.62e-24 | 95.9 |
| Msa0642660 | MtrunA17_Chr7g0263131 | 37.267 | 161 | 47 | 5 | 113 | 266 | 34 | 147 | 6.28e-21 | 87.4 |
| Msa0642660 | MtrunA17_Chr1g0188911 | 40.123 | 162 | 75 | 7 | 112 | 262 | 43 | 193 | 8.76e-20 | 85.1 |
| Msa0642660 | MtrunA17_Chr4g0012791 | 38.372 | 172 | 69 | 7 | 112 | 263 | 226 | 380 | 2.63e-19 | 87.8 |
| Msa0642660 | MtrunA17_Chr4g0061301 | 36.709 | 158 | 81 | 4 | 113 | 266 | 348 | 490 | 9.03e-19 | 86.3 |
| Msa0642660 | MtrunA17_Chr7g0231181 | 35.256 | 156 | 45 | 4 | 113 | 266 | 240 | 341 | 1.91e-18 | 84.3 |
| Msa0642660 | MtrunA17_Chr1g0188901 | 34.239 | 184 | 77 | 6 | 89 | 262 | 36 | 185 | 2.52e-16 | 75.5 |
| Msa0642660 | MtrunA17_Chr7g0222831 | 35.252 | 139 | 63 | 4 | 66 | 204 | 12 | 123 | 2.18e-14 | 70.1 |
| Msa0642660 | MtrunA17_Chr2g0331601 | 35.537 | 121 | 72 | 3 | 112 | 231 | 45 | 160 | 3.82e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642660 | AT2G28200.1 | 39.875 | 321 | 105 | 9 | 17 | 294 | 11 | 286 | 1.46e-55 | 181 |
| Msa0642660 | AT5G03510.1 | 38.538 | 301 | 133 | 10 | 21 | 294 | 17 | 292 | 7.32e-50 | 167 |
| Msa0642660 | AT5G04390.1 | 32.718 | 379 | 134 | 12 | 14 | 294 | 7 | 362 | 8.82e-46 | 158 |
| Msa0642660 | AT3G10470.1 | 32.000 | 325 | 103 | 10 | 60 | 294 | 102 | 398 | 4.55e-38 | 139 |
| Msa0642660 | AT2G37430.1 | 34.322 | 236 | 74 | 8 | 54 | 277 | 1 | 167 | 4.00e-27 | 104 |
| Msa0642660 | AT3G53600.1 | 33.742 | 163 | 46 | 4 | 113 | 267 | 49 | 157 | 1.98e-20 | 86.7 |
| Msa0642660 | AT3G60580.1 | 33.491 | 212 | 86 | 6 | 59 | 266 | 120 | 280 | 4.22e-18 | 82.8 |
| Msa0642660 | AT2G28710.1 | 30.131 | 229 | 70 | 8 | 57 | 274 | 5 | 154 | 4.46e-18 | 79.7 |
| Msa0642660 | AT3G19580.1 | 31.250 | 176 | 72 | 6 | 56 | 231 | 61 | 187 | 1.04e-15 | 75.9 |
| Msa0642660 | AT3G19580.2 | 31.250 | 176 | 72 | 6 | 56 | 231 | 61 | 187 | 1.04e-15 | 75.9 |
| Msa0642660 | AT5G67450.1 | 28.571 | 210 | 93 | 5 | 22 | 231 | 34 | 186 | 2.30e-14 | 71.6 |
| Msa0642660 | AT5G56200.1 | 32.824 | 131 | 60 | 3 | 115 | 244 | 344 | 447 | 4.00e-12 | 66.6 |
| Msa0642660 | AT1G02040.1 | 44.304 | 79 | 36 | 3 | 61 | 139 | 106 | 176 | 8.38e-11 | 62.4 |
Find 81 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAACAAAGTATCAGTTTC+CGG | 0.317665 | 4_3:-44391565 | Msa0642660:CDS |
| GGTTTGAAAGCAGCTATTAA+TGG | 0.332072 | 4_3:-44391783 | Msa0642660:CDS |
| TGATGATGAAGAAGAAAATT+TGG | 0.335616 | 4_3:-44392192 | Msa0642660:CDS |
| GATGGCTGCTGCTCCGGCTT+TGG | 0.337938 | 4_3:-44391523 | Msa0642660:CDS |
| GGCTGCTGCTCCGGCTTTGG+TGG | 0.355185 | 4_3:-44391520 | Msa0642660:CDS |
| CGCCGCGGCTGTCGCGGCCC+CGG | 0.362249 | 4_3:-44391658 | Msa0642660:CDS |
| GAAACTGATACTTTGTTTCC+CGG | 0.368555 | 4_3:+44391568 | None:intergenic |
| TTTGGTGGGTTGCCATTATT+AGG | 0.369907 | 4_3:-44391505 | None:intergenic |
| ATCCCACCATTGCCTAATAA+TGG | 0.373982 | 4_3:+44391493 | None:intergenic |
| TGTTTCCCGGAGATCCTCTT+CGG | 0.377948 | 4_3:+44391581 | None:intergenic |
| ATTCATGAGTGTTCCATTTG+TGG | 0.380454 | 4_3:-44391747 | Msa0642660:CDS |
| ACAATTGGATCTTAACCTTC+CGG | 0.380863 | 4_3:-44391607 | Msa0642660:CDS |
| GTTTGAAAGCAGCTATTAAT+GGG | 0.383602 | 4_3:-44391782 | Msa0642660:CDS |
| CGTGAACTCTGAACCACAAA+TGG | 0.399350 | 4_3:+44391734 | None:intergenic |
| TTCAAGCTTTGGGTGGTCAC+AGG | 0.400243 | 4_3:-44391995 | Msa0642660:CDS |
| GGCCGAGGCTGCTGCGGCAG+TGG | 0.401971 | 4_3:+44391921 | None:intergenic |
| TGAGATGGAAGAGTTTGTTA+TGG | 0.402618 | 4_3:-44392372 | None:intergenic |
| CTTGGCCTAACTCCTTCATC+CGG | 0.411052 | 4_3:+44391639 | None:intergenic |
| GCTGTCGCGGCCCCGGATGA+AGG | 0.431837 | 4_3:-44391651 | Msa0642660:CDS |
| TCCTTGTGGTGTTGTTGCTA+TGG | 0.433985 | 4_3:-44392267 | Msa0642660:CDS |
| GTGTCCACCCAATGCTTGTC+CGG | 0.434536 | 4_3:+44391710 | None:intergenic |
| GTTTCCCGGAGATCCTCTTC+GGG | 0.436914 | 4_3:+44391582 | None:intergenic |
| GGCAAACGCCGCGGCTGTCG+CGG | 0.437593 | 4_3:-44391664 | Msa0642660:CDS |
| TCCAATTGTAAAATATTCCT+TGG | 0.441862 | 4_3:+44391621 | None:intergenic |
| TGATGAGAATAAAAGGGAAA+AGG | 0.444034 | 4_3:-44392111 | Msa0642660:CDS |
| AATGGTGATGGCTGCTGCTC+CGG | 0.446387 | 4_3:-44391529 | Msa0642660:CDS |
| CGGCCCCGGATGAAGGAGTT+AGG | 0.454771 | 4_3:-44391644 | Msa0642660:CDS |
| GATGAGAATAAAAGGGAAAA+GGG | 0.455980 | 4_3:-44392110 | Msa0642660:CDS |
| CACCACTGCCGCAGCAGCCT+CGG | 0.457441 | 4_3:-44391923 | Msa0642660:CDS |
| CGGAGATCCTCTTCGGGCGC+CGG | 0.459805 | 4_3:+44391588 | None:intergenic |
| ATCCGGGGCCGCGACAGCCG+CGG | 0.468884 | 4_3:+44391656 | None:intergenic |
| GGCTGCTGCGGCAGTGGTGA+TGG | 0.470904 | 4_3:+44391927 | None:intergenic |
| GTTTGTTATGGAGGAAAAGA+TGG | 0.472339 | 4_3:-44392360 | Msa0642660:CDS |
| CGGCGCCCGAAGAGGATCTC+CGG | 0.472384 | 4_3:-44391587 | Msa0642660:CDS |
| AATGGAACACTCATGAATCT+TGG | 0.473930 | 4_3:+44391752 | None:intergenic |
| CCACCCAAAGCTTGAAAAGA+AGG | 0.473990 | 4_3:+44392002 | None:intergenic |
| TTTCAAATGGGGAATCATCA+TGG | 0.481342 | 4_3:-44391804 | Msa0642660:CDS |
| TTGGCCTAACTCCTTCATCC+GGG | 0.483136 | 4_3:+44391640 | None:intergenic |
| GATGGAAGAGTTTGTTATGG+AGG | 0.484063 | 4_3:-44392369 | Msa0642660:CDS |
| GGTGAGACTAGCACAAAACT+TGG | 0.487527 | 4_3:-44392065 | Msa0642660:CDS |
| TTCACGTCCGGACAAGCATT+GGG | 0.492037 | 4_3:-44391717 | Msa0642660:CDS |
| CTTGAAAAGAAGGAAAAGTT+CGG | 0.492437 | 4_3:+44392012 | None:intergenic |
| GCTGCTGCTCCGGCTTTGGT+GGG | 0.498866 | 4_3:-44391519 | Msa0642660:CDS |
| AAAAGGGAAAAGGGTAGTCA+TGG | 0.501331 | 4_3:-44392101 | Msa0642660:CDS |
| GTGGACACATGAGGAGGCAT+AGG | 0.504351 | 4_3:-44391695 | Msa0642660:CDS |
| GACTGTGGCCGAGGCTGCTG+CGG | 0.506272 | 4_3:+44391915 | None:intergenic |
| TGTTTGATTCTTCTAGCTCA+AGG | 0.518149 | 4_3:-44392164 | Msa0642660:CDS |
| TAATGGCAACCCACCAAAGC+CGG | 0.522225 | 4_3:+44391510 | None:intergenic |
| AAAGAAACCATCGGCCCACC+AGG | 0.527272 | 4_3:+44391825 | None:intergenic |
| GGCGCCCGAAGAGGATCTCC+GGG | 0.528337 | 4_3:-44391586 | Msa0642660:CDS |
| GTTCACGTCCGGACAAGCAT+TGG | 0.531044 | 4_3:-44391718 | Msa0642660:CDS |
| TGTGGTTCAGAGTTCACGTC+CGG | 0.531850 | 4_3:-44391729 | Msa0642660:CDS |
| GATCCTCTTCGGGCGCCGGA+AGG | 0.534882 | 4_3:+44391592 | None:intergenic |
| TCAAGCTTTGGGTGGTCACA+GGG | 0.535579 | 4_3:-44391994 | Msa0642660:CDS |
| AAAGCCTAAAATCATGGTTG+AGG | 0.549688 | 4_3:-44391961 | Msa0642660:CDS |
| TGGACACATGAGGAGGCATA+GGG | 0.553507 | 4_3:-44391694 | Msa0642660:CDS |
| ATTCATCACTATTCGCAACC+AGG | 0.555512 | 4_3:+44391865 | None:intergenic |
| TGAGAAACCTGGTGGGCCGA+TGG | 0.557169 | 4_3:-44391832 | Msa0642660:CDS |
| TGATTCTCAATCAGTTAACC+TGG | 0.563461 | 4_3:-44391883 | Msa0642660:CDS |
| CCCATTTGAAAAGAAACCAT+CGG | 0.580230 | 4_3:+44391816 | None:intergenic |
| GAGGAGGCATAGGGCATCTG+TGG | 0.584892 | 4_3:-44391685 | Msa0642660:CDS |
| TGTGATGAAGACTGTGGCCG+AGG | 0.593635 | 4_3:+44391906 | None:intergenic |
| AGCAGCTATTAATGGGAACA+AGG | 0.601134 | 4_3:-44391775 | Msa0642660:CDS |
| TAACCTTCCGGCGCCCGAAG+AGG | 0.605677 | 4_3:-44391595 | Msa0642660:CDS |
| TGGCCTAACTCCTTCATCCG+GGG | 0.608914 | 4_3:+44391641 | None:intergenic |
| TGCTGCGGCAGTGGTGATGG+TGG | 0.609561 | 4_3:+44391930 | None:intergenic |
| CGGATGAAGGAGTTAGGCCA+AGG | 0.613650 | 4_3:-44391638 | Msa0642660:CDS |
| TTTGAAGAAGCTGAGAAACC+TGG | 0.625192 | 4_3:-44391843 | Msa0642660:CDS |
| GATGCAACTCACATAGCCAA+AGG | 0.631447 | 4_3:-44392320 | Msa0642660:CDS |
| ACGTCCGGACAAGCATTGGG+TGG | 0.632969 | 4_3:-44391714 | Msa0642660:CDS |
| AAGCATTGGGTGGACACATG+AGG | 0.635825 | 4_3:-44391704 | Msa0642660:CDS |
| GGCATCTGTGGCAAACGCCG+CGG | 0.643037 | 4_3:-44391673 | Msa0642660:CDS |
| CATTGGGTGGACACATGAGG+AGG | 0.644735 | 4_3:-44391701 | Msa0642660:CDS |
| GCCATAGCAACAACACCACA+AGG | 0.645146 | 4_3:+44392266 | None:intergenic |
| TTGATTCTTCTAGCTCAAGG+TGG | 0.647646 | 4_3:-44392161 | Msa0642660:CDS |
| GAAGAAGCTGAGAAACCTGG+TGG | 0.669965 | 4_3:-44391840 | Msa0642660:CDS |
| CCAAAGGAAAACGTACCAAG+AGG | 0.677248 | 4_3:-44392304 | Msa0642660:CDS |
| GGTGGAAATCATAAGCAACA+TGG | 0.700755 | 4_3:-44392143 | Msa0642660:CDS |
| AAGAAGCTGAGAAACCTGGT+GGG | 0.700973 | 4_3:-44391839 | Msa0642660:CDS |
| GGAAATCATAAGCAACATGG+TGG | 0.725682 | 4_3:-44392140 | Msa0642660:CDS |
| GAATCATGTGATGAAGACTG+TGG | 0.796667 | 4_3:+44391900 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTTGATGAGAATAAAA+GGG | - | chr4_3:44391757-44391776 | Msa0642660:CDS | 20.0% |
| !! | AGTCATGGAAATAAAAAAAT+TGG | - | chr4_3:44391788-44391807 | Msa0642660:CDS | 20.0% |
| !!! | TTTTGTTGATGAGAATAAAA+GGG | - | chr4_3:44391757-44391776 | Msa0642660:CDS | 20.0% |
| !! | AGTCATGGAAATAAAAAAAT+TGG | - | chr4_3:44391788-44391807 | Msa0642660:CDS | 20.0% |
| !! | TGATGATGAAGAAGAAAATT+TGG | - | chr4_3:44391682-44391701 | Msa0642660:CDS | 25.0% |
| !!! | GTTTTGTTGATGAGAATAAA+AGG | - | chr4_3:44391756-44391775 | Msa0642660:CDS | 25.0% |
| ! | TCCAATTGTAAAATATTCCT+TGG | + | chr4_3:44392256-44392275 | None:intergenic | 25.0% |
| !! | TGATGATGAAGAAGAAAATT+TGG | - | chr4_3:44391682-44391701 | Msa0642660:CDS | 25.0% |
| !!! | GTTTTGTTGATGAGAATAAA+AGG | - | chr4_3:44391756-44391775 | Msa0642660:CDS | 25.0% |
| ! | TCCAATTGTAAAATATTCCT+TGG | + | chr4_3:44392256-44392275 | None:intergenic | 25.0% |
| AGACAAAAATCTTAACCTCT+TGG | + | chr4_3:44391588-44391607 | None:intergenic | 30.0% | |
| ! | TTAAGATTTTTGTCTCCTTG+TGG | - | chr4_3:44391593-44391612 | Msa0642660:CDS | 30.0% |
| TGATGAGAATAAAAGGGAAA+AGG | - | chr4_3:44391763-44391782 | Msa0642660:CDS | 30.0% | |
| GATGAGAATAAAAGGGAAAA+GGG | - | chr4_3:44391764-44391783 | Msa0642660:CDS | 30.0% | |
| CTTGAAAAGAAGGAAAAGTT+CGG | + | chr4_3:44391865-44391884 | None:intergenic | 30.0% | |
| !! | TTTTCCTTCTTTTCAAGCTT+TGG | - | chr4_3:44391868-44391887 | Msa0642660:CDS | 30.0% |
| !! | TTTCCTTCTTTTCAAGCTTT+GGG | - | chr4_3:44391869-44391888 | Msa0642660:CDS | 30.0% |
| TCACAAAAAGCCTAAAATCA+TGG | - | chr4_3:44391907-44391926 | Msa0642660:CDS | 30.0% | |
| GTTTGAAAGCAGCTATTAAT+GGG | - | chr4_3:44392092-44392111 | Msa0642660:CDS | 30.0% | |
| ! | GCCAAGGAATATTTTACAAT+TGG | - | chr4_3:44392252-44392271 | Msa0642660:CDS | 30.0% |
| TACACAAAAATCAATGGTGA+TGG | - | chr4_3:44392333-44392352 | Msa0642660:CDS | 30.0% | |
| AGACAAAAATCTTAACCTCT+TGG | + | chr4_3:44391588-44391607 | None:intergenic | 30.0% | |
| ! | TTAAGATTTTTGTCTCCTTG+TGG | - | chr4_3:44391593-44391612 | Msa0642660:CDS | 30.0% |
| TGATGAGAATAAAAGGGAAA+AGG | - | chr4_3:44391763-44391782 | Msa0642660:CDS | 30.0% | |
| GATGAGAATAAAAGGGAAAA+GGG | - | chr4_3:44391764-44391783 | Msa0642660:CDS | 30.0% | |
| CTTGAAAAGAAGGAAAAGTT+CGG | + | chr4_3:44391865-44391884 | None:intergenic | 30.0% | |
| !! | TTTTCCTTCTTTTCAAGCTT+TGG | - | chr4_3:44391868-44391887 | Msa0642660:CDS | 30.0% |
| !! | TTTCCTTCTTTTCAAGCTTT+GGG | - | chr4_3:44391869-44391888 | Msa0642660:CDS | 30.0% |
| TCACAAAAAGCCTAAAATCA+TGG | - | chr4_3:44391907-44391926 | Msa0642660:CDS | 30.0% | |
| GTTTGAAAGCAGCTATTAAT+GGG | - | chr4_3:44392092-44392111 | Msa0642660:CDS | 30.0% | |
| ! | GCCAAGGAATATTTTACAAT+TGG | - | chr4_3:44392252-44392271 | Msa0642660:CDS | 30.0% |
| TACACAAAAATCAATGGTGA+TGG | - | chr4_3:44392333-44392352 | Msa0642660:CDS | 30.0% | |
| !! | GTTTGTTATGGAGGAAAAGA+TGG | - | chr4_3:44391514-44391533 | Msa0642660:CDS | 35.0% |
| !! | TGTTTGATTCTTCTAGCTCA+AGG | - | chr4_3:44391710-44391729 | Msa0642660:CDS | 35.0% |
| AAAGCCTAAAATCATGGTTG+AGG | - | chr4_3:44391913-44391932 | Msa0642660:CDS | 35.0% | |
| ! | TTCTCCTCAACCATGATTTT+AGG | + | chr4_3:44391920-44391939 | None:intergenic | 35.0% |
| TGATTCTCAATCAGTTAACC+TGG | - | chr4_3:44391991-44392010 | Msa0642660:CDS | 35.0% | |
| CCCATTTGAAAAGAAACCAT+CGG | + | chr4_3:44392061-44392080 | None:intergenic | 35.0% | |
| ! | CCGATGGTTTCTTTTCAAAT+GGG | - | chr4_3:44392058-44392077 | Msa0642660:CDS | 35.0% |
| ! | CGATGGTTTCTTTTCAAATG+GGG | - | chr4_3:44392059-44392078 | Msa0642660:CDS | 35.0% |
| TTTCAAATGGGGAATCATCA+TGG | - | chr4_3:44392070-44392089 | Msa0642660:CDS | 35.0% | |
| GGTTTGAAAGCAGCTATTAA+TGG | - | chr4_3:44392091-44392110 | Msa0642660:CDS | 35.0% | |
| AATGGAACACTCATGAATCT+TGG | + | chr4_3:44392125-44392144 | None:intergenic | 35.0% | |
| ATTCATGAGTGTTCCATTTG+TGG | - | chr4_3:44392127-44392146 | Msa0642660:CDS | 35.0% | |
| ACAATTGGATCTTAACCTTC+CGG | - | chr4_3:44392267-44392286 | Msa0642660:CDS | 35.0% | |
| ! | GAAACTGATACTTTGTTTCC+CGG | + | chr4_3:44392309-44392328 | None:intergenic | 35.0% |
| ! | GGAAACAAAGTATCAGTTTC+CGG | - | chr4_3:44392309-44392328 | Msa0642660:CDS | 35.0% |
| !!! | ACCATTGATTTTTGTGTAGC+CGG | + | chr4_3:44392331-44392350 | None:intergenic | 35.0% |
| !! | GTTTGTTATGGAGGAAAAGA+TGG | - | chr4_3:44391514-44391533 | Msa0642660:CDS | 35.0% |
| !! | TGTTTGATTCTTCTAGCTCA+AGG | - | chr4_3:44391710-44391729 | Msa0642660:CDS | 35.0% |
| AAAGCCTAAAATCATGGTTG+AGG | - | chr4_3:44391913-44391932 | Msa0642660:CDS | 35.0% | |
| ! | TTCTCCTCAACCATGATTTT+AGG | + | chr4_3:44391920-44391939 | None:intergenic | 35.0% |
| TGATTCTCAATCAGTTAACC+TGG | - | chr4_3:44391991-44392010 | Msa0642660:CDS | 35.0% | |
| CCCATTTGAAAAGAAACCAT+CGG | + | chr4_3:44392061-44392080 | None:intergenic | 35.0% | |
| ! | CCGATGGTTTCTTTTCAAAT+GGG | - | chr4_3:44392058-44392077 | Msa0642660:CDS | 35.0% |
| ! | CGATGGTTTCTTTTCAAATG+GGG | - | chr4_3:44392059-44392078 | Msa0642660:CDS | 35.0% |
| TTTCAAATGGGGAATCATCA+TGG | - | chr4_3:44392070-44392089 | Msa0642660:CDS | 35.0% | |
| GGTTTGAAAGCAGCTATTAA+TGG | - | chr4_3:44392091-44392110 | Msa0642660:CDS | 35.0% | |
| AATGGAACACTCATGAATCT+TGG | + | chr4_3:44392125-44392144 | None:intergenic | 35.0% | |
| ATTCATGAGTGTTCCATTTG+TGG | - | chr4_3:44392127-44392146 | Msa0642660:CDS | 35.0% | |
| ACAATTGGATCTTAACCTTC+CGG | - | chr4_3:44392267-44392286 | Msa0642660:CDS | 35.0% | |
| ! | GAAACTGATACTTTGTTTCC+CGG | + | chr4_3:44392309-44392328 | None:intergenic | 35.0% |
| ! | GGAAACAAAGTATCAGTTTC+CGG | - | chr4_3:44392309-44392328 | Msa0642660:CDS | 35.0% |
| !!! | ACCATTGATTTTTGTGTAGC+CGG | + | chr4_3:44392331-44392350 | None:intergenic | 35.0% |
| !! | TTGATTCTTCTAGCTCAAGG+TGG | - | chr4_3:44391713-44391732 | Msa0642660:CDS | 40.0% |
| GGTGGAAATCATAAGCAACA+TGG | - | chr4_3:44391731-44391750 | Msa0642660:CDS | 40.0% | |
| GGAAATCATAAGCAACATGG+TGG | - | chr4_3:44391734-44391753 | Msa0642660:CDS | 40.0% | |
| AAAAGGGAAAAGGGTAGTCA+TGG | - | chr4_3:44391773-44391792 | Msa0642660:CDS | 40.0% | |
| GAATCATGTGATGAAGACTG+TGG | + | chr4_3:44391977-44391996 | None:intergenic | 40.0% | |
| ATTCATCACTATTCGCAACC+AGG | + | chr4_3:44392012-44392031 | None:intergenic | 40.0% | |
| TTTGAAGAAGCTGAGAAACC+TGG | - | chr4_3:44392031-44392050 | Msa0642660:CDS | 40.0% | |
| ! | GCCGATGGTTTCTTTTCAAA+TGG | - | chr4_3:44392057-44392076 | Msa0642660:CDS | 40.0% |
| AGCAGCTATTAATGGGAACA+AGG | - | chr4_3:44392099-44392118 | Msa0642660:CDS | 40.0% | |
| TCCGGCTACACAAAAATCAA+TGG | - | chr4_3:44392327-44392346 | Msa0642660:CDS | 40.0% | |
| !! | TTGATTCTTCTAGCTCAAGG+TGG | - | chr4_3:44391713-44391732 | Msa0642660:CDS | 40.0% |
| GGTGGAAATCATAAGCAACA+TGG | - | chr4_3:44391731-44391750 | Msa0642660:CDS | 40.0% | |
| GGAAATCATAAGCAACATGG+TGG | - | chr4_3:44391734-44391753 | Msa0642660:CDS | 40.0% | |
| AAAAGGGAAAAGGGTAGTCA+TGG | - | chr4_3:44391773-44391792 | Msa0642660:CDS | 40.0% | |
| GAATCATGTGATGAAGACTG+TGG | + | chr4_3:44391977-44391996 | None:intergenic | 40.0% | |
| ATTCATCACTATTCGCAACC+AGG | + | chr4_3:44392012-44392031 | None:intergenic | 40.0% | |
| TTTGAAGAAGCTGAGAAACC+TGG | - | chr4_3:44392031-44392050 | Msa0642660:CDS | 40.0% | |
| ! | GCCGATGGTTTCTTTTCAAA+TGG | - | chr4_3:44392057-44392076 | Msa0642660:CDS | 40.0% |
| AGCAGCTATTAATGGGAACA+AGG | - | chr4_3:44392099-44392118 | Msa0642660:CDS | 40.0% | |
| TCCGGCTACACAAAAATCAA+TGG | - | chr4_3:44392327-44392346 | Msa0642660:CDS | 40.0% | |
| GATGCAACTCACATAGCCAA+AGG | - | chr4_3:44391554-44391573 | Msa0642660:CDS | 45.0% | |
| ! | CCTCTTGGTACGTTTTCCTT+TGG | + | chr4_3:44391573-44391592 | None:intergenic | 45.0% |
| CCAAAGGAAAACGTACCAAG+AGG | - | chr4_3:44391570-44391589 | Msa0642660:CDS | 45.0% | |
| !! | TCCTTGTGGTGTTGTTGCTA+TGG | - | chr4_3:44391607-44391626 | Msa0642660:CDS | 45.0% |
| GGTGAGACTAGCACAAAACT+TGG | - | chr4_3:44391809-44391828 | Msa0642660:CDS | 45.0% | |
| CCACCCAAAGCTTGAAAAGA+AGG | + | chr4_3:44391875-44391894 | None:intergenic | 45.0% | |
| !!! | CCTTCTTTTCAAGCTTTGGG+TGG | - | chr4_3:44391872-44391891 | Msa0642660:CDS | 45.0% |
| AAGAAGCTGAGAAACCTGGT+GGG | - | chr4_3:44392035-44392054 | Msa0642660:CDS | 45.0% | |
| CGTGAACTCTGAACCACAAA+TGG | + | chr4_3:44392143-44392162 | None:intergenic | 45.0% | |
| GATGCAACTCACATAGCCAA+AGG | - | chr4_3:44391554-44391573 | Msa0642660:CDS | 45.0% | |
| ! | CCTCTTGGTACGTTTTCCTT+TGG | + | chr4_3:44391573-44391592 | None:intergenic | 45.0% |
| CCAAAGGAAAACGTACCAAG+AGG | - | chr4_3:44391570-44391589 | Msa0642660:CDS | 45.0% | |
| !! | TCCTTGTGGTGTTGTTGCTA+TGG | - | chr4_3:44391607-44391626 | Msa0642660:CDS | 45.0% |
| GGTGAGACTAGCACAAAACT+TGG | - | chr4_3:44391809-44391828 | Msa0642660:CDS | 45.0% | |
| CCACCCAAAGCTTGAAAAGA+AGG | + | chr4_3:44391875-44391894 | None:intergenic | 45.0% | |
| !!! | CCTTCTTTTCAAGCTTTGGG+TGG | - | chr4_3:44391872-44391891 | Msa0642660:CDS | 45.0% |
| AAGAAGCTGAGAAACCTGGT+GGG | - | chr4_3:44392035-44392054 | Msa0642660:CDS | 45.0% | |
| CGTGAACTCTGAACCACAAA+TGG | + | chr4_3:44392143-44392162 | None:intergenic | 45.0% | |
| GCCATAGCAACAACACCACA+AGG | + | chr4_3:44391611-44391630 | None:intergenic | 50.0% | |
| !! | TTCAAGCTTTGGGTGGTCAC+AGG | - | chr4_3:44391879-44391898 | Msa0642660:CDS | 50.0% |
| !! | TCAAGCTTTGGGTGGTCACA+GGG | - | chr4_3:44391880-44391899 | Msa0642660:CDS | 50.0% |
| GAAGAAGCTGAGAAACCTGG+TGG | - | chr4_3:44392034-44392053 | Msa0642660:CDS | 50.0% | |
| TGTGGTTCAGAGTTCACGTC+CGG | - | chr4_3:44392145-44392164 | Msa0642660:CDS | 50.0% | |
| TTCACGTCCGGACAAGCATT+GGG | - | chr4_3:44392157-44392176 | Msa0642660:CDS | 50.0% | |
| !! | AAGCATTGGGTGGACACATG+AGG | - | chr4_3:44392170-44392189 | Msa0642660:CDS | 50.0% |
| ! | TGGACACATGAGGAGGCATA+GGG | - | chr4_3:44392180-44392199 | Msa0642660:CDS | 50.0% |
| TTGGCCTAACTCCTTCATCC+GGG | + | chr4_3:44392237-44392256 | None:intergenic | 50.0% | |
| CTTGGCCTAACTCCTTCATC+CGG | + | chr4_3:44392238-44392257 | None:intergenic | 50.0% | |
| TGTTTCCCGGAGATCCTCTT+CGG | + | chr4_3:44392296-44392315 | None:intergenic | 50.0% | |
| TAATGGCAACCCACCAAAGC+CGG | + | chr4_3:44392367-44392386 | None:intergenic | 50.0% | |
| GCCATAGCAACAACACCACA+AGG | + | chr4_3:44391611-44391630 | None:intergenic | 50.0% | |
| !! | TTCAAGCTTTGGGTGGTCAC+AGG | - | chr4_3:44391879-44391898 | Msa0642660:CDS | 50.0% |
| !! | TCAAGCTTTGGGTGGTCACA+GGG | - | chr4_3:44391880-44391899 | Msa0642660:CDS | 50.0% |
| GAAGAAGCTGAGAAACCTGG+TGG | - | chr4_3:44392034-44392053 | Msa0642660:CDS | 50.0% | |
| TGTGGTTCAGAGTTCACGTC+CGG | - | chr4_3:44392145-44392164 | Msa0642660:CDS | 50.0% | |
| TTCACGTCCGGACAAGCATT+GGG | - | chr4_3:44392157-44392176 | Msa0642660:CDS | 50.0% | |
| !! | AAGCATTGGGTGGACACATG+AGG | - | chr4_3:44392170-44392189 | Msa0642660:CDS | 50.0% |
| ! | TGGACACATGAGGAGGCATA+GGG | - | chr4_3:44392180-44392199 | Msa0642660:CDS | 50.0% |
| TTGGCCTAACTCCTTCATCC+GGG | + | chr4_3:44392237-44392256 | None:intergenic | 50.0% | |
| CTTGGCCTAACTCCTTCATC+CGG | + | chr4_3:44392238-44392257 | None:intergenic | 50.0% | |
| TGTTTCCCGGAGATCCTCTT+CGG | + | chr4_3:44392296-44392315 | None:intergenic | 50.0% | |
| TAATGGCAACCCACCAAAGC+CGG | + | chr4_3:44392367-44392386 | None:intergenic | 50.0% | |
| TGTGATGAAGACTGTGGCCG+AGG | + | chr4_3:44391971-44391990 | None:intergenic | 55.0% | |
| AAAGAAACCATCGGCCCACC+AGG | + | chr4_3:44392052-44392071 | None:intergenic | 55.0% | |
| GTTCACGTCCGGACAAGCAT+TGG | - | chr4_3:44392156-44392175 | Msa0642660:CDS | 55.0% | |
| GTGTCCACCCAATGCTTGTC+CGG | + | chr4_3:44392167-44392186 | None:intergenic | 55.0% | |
| CATTGGGTGGACACATGAGG+AGG | - | chr4_3:44392173-44392192 | Msa0642660:CDS | 55.0% | |
| ! | GTGGACACATGAGGAGGCAT+AGG | - | chr4_3:44392179-44392198 | Msa0642660:CDS | 55.0% |
| TGGCCTAACTCCTTCATCCG+GGG | + | chr4_3:44392236-44392255 | None:intergenic | 55.0% | |
| CGGATGAAGGAGTTAGGCCA+AGG | - | chr4_3:44392236-44392255 | Msa0642660:CDS | 55.0% | |
| GTTTCCCGGAGATCCTCTTC+GGG | + | chr4_3:44392295-44392314 | None:intergenic | 55.0% | |
| !! | AATGGTGATGGCTGCTGCTC+CGG | - | chr4_3:44392345-44392364 | Msa0642660:CDS | 55.0% |
| TGTGATGAAGACTGTGGCCG+AGG | + | chr4_3:44391971-44391990 | None:intergenic | 55.0% | |
| AAAGAAACCATCGGCCCACC+AGG | + | chr4_3:44392052-44392071 | None:intergenic | 55.0% | |
| GTTCACGTCCGGACAAGCAT+TGG | - | chr4_3:44392156-44392175 | Msa0642660:CDS | 55.0% | |
| GTGTCCACCCAATGCTTGTC+CGG | + | chr4_3:44392167-44392186 | None:intergenic | 55.0% | |
| CATTGGGTGGACACATGAGG+AGG | - | chr4_3:44392173-44392192 | Msa0642660:CDS | 55.0% | |
| ! | GTGGACACATGAGGAGGCAT+AGG | - | chr4_3:44392179-44392198 | Msa0642660:CDS | 55.0% |
| TGGCCTAACTCCTTCATCCG+GGG | + | chr4_3:44392236-44392255 | None:intergenic | 55.0% | |
| CGGATGAAGGAGTTAGGCCA+AGG | - | chr4_3:44392236-44392255 | Msa0642660:CDS | 55.0% | |
| GTTTCCCGGAGATCCTCTTC+GGG | + | chr4_3:44392295-44392314 | None:intergenic | 55.0% | |
| !! | AATGGTGATGGCTGCTGCTC+CGG | - | chr4_3:44392345-44392364 | Msa0642660:CDS | 55.0% |
| ! | TGAGAAACCTGGTGGGCCGA+TGG | - | chr4_3:44392042-44392061 | Msa0642660:CDS | 60.0% |
| !! | ACGTCCGGACAAGCATTGGG+TGG | - | chr4_3:44392160-44392179 | Msa0642660:CDS | 60.0% |
| ! | GAGGAGGCATAGGGCATCTG+TGG | - | chr4_3:44392189-44392208 | Msa0642660:CDS | 60.0% |
| ! | TGAGAAACCTGGTGGGCCGA+TGG | - | chr4_3:44392042-44392061 | Msa0642660:CDS | 60.0% |
| !! | ACGTCCGGACAAGCATTGGG+TGG | - | chr4_3:44392160-44392179 | Msa0642660:CDS | 60.0% |
| ! | GAGGAGGCATAGGGCATCTG+TGG | - | chr4_3:44392189-44392208 | Msa0642660:CDS | 60.0% |
| !! | TGCTGCGGCAGTGGTGATGG+TGG | + | chr4_3:44391947-44391966 | None:intergenic | 65.0% |
| GGCATCTGTGGCAAACGCCG+CGG | - | chr4_3:44392201-44392220 | Msa0642660:CDS | 65.0% | |
| CGGCCCCGGATGAAGGAGTT+AGG | - | chr4_3:44392230-44392249 | Msa0642660:CDS | 65.0% | |
| TAACCTTCCGGCGCCCGAAG+AGG | - | chr4_3:44392279-44392298 | Msa0642660:CDS | 65.0% | |
| GATGGCTGCTGCTCCGGCTT+TGG | - | chr4_3:44392351-44392370 | Msa0642660:CDS | 65.0% | |
| ! | GCTGCTGCTCCGGCTTTGGT+GGG | - | chr4_3:44392355-44392374 | Msa0642660:CDS | 65.0% |
| !! | TGCTGCGGCAGTGGTGATGG+TGG | + | chr4_3:44391947-44391966 | None:intergenic | 65.0% |
| GGCATCTGTGGCAAACGCCG+CGG | - | chr4_3:44392201-44392220 | Msa0642660:CDS | 65.0% | |
| CGGCCCCGGATGAAGGAGTT+AGG | - | chr4_3:44392230-44392249 | Msa0642660:CDS | 65.0% | |
| TAACCTTCCGGCGCCCGAAG+AGG | - | chr4_3:44392279-44392298 | Msa0642660:CDS | 65.0% | |
| GATGGCTGCTGCTCCGGCTT+TGG | - | chr4_3:44392351-44392370 | Msa0642660:CDS | 65.0% | |
| ! | GCTGCTGCTCCGGCTTTGGT+GGG | - | chr4_3:44392355-44392374 | Msa0642660:CDS | 65.0% |
| GGCTGCTGCGGCAGTGGTGA+TGG | + | chr4_3:44391950-44391969 | None:intergenic | 70.0% | |
| CACCACTGCCGCAGCAGCCT+CGG | - | chr4_3:44391951-44391970 | Msa0642660:CDS | 70.0% | |
| GACTGTGGCCGAGGCTGCTG+CGG | + | chr4_3:44391962-44391981 | None:intergenic | 70.0% | |
| !! | GATCCTCTTCGGGCGCCGGA+AGG | + | chr4_3:44392285-44392304 | None:intergenic | 70.0% |
| CGGAGATCCTCTTCGGGCGC+CGG | + | chr4_3:44392289-44392308 | None:intergenic | 70.0% | |
| CGGCGCCCGAAGAGGATCTC+CGG | - | chr4_3:44392287-44392306 | Msa0642660:CDS | 70.0% | |
| GGCGCCCGAAGAGGATCTCC+GGG | - | chr4_3:44392288-44392307 | Msa0642660:CDS | 70.0% | |
| ! | GGCTGCTGCTCCGGCTTTGG+TGG | - | chr4_3:44392354-44392373 | Msa0642660:CDS | 70.0% |
| GGCTGCTGCGGCAGTGGTGA+TGG | + | chr4_3:44391950-44391969 | None:intergenic | 70.0% | |
| CACCACTGCCGCAGCAGCCT+CGG | - | chr4_3:44391951-44391970 | Msa0642660:CDS | 70.0% | |
| GACTGTGGCCGAGGCTGCTG+CGG | + | chr4_3:44391962-44391981 | None:intergenic | 70.0% | |
| !! | GATCCTCTTCGGGCGCCGGA+AGG | + | chr4_3:44392285-44392304 | None:intergenic | 70.0% |
| CGGAGATCCTCTTCGGGCGC+CGG | + | chr4_3:44392289-44392308 | None:intergenic | 70.0% | |
| CGGCGCCCGAAGAGGATCTC+CGG | - | chr4_3:44392287-44392306 | Msa0642660:CDS | 70.0% | |
| GGCGCCCGAAGAGGATCTCC+GGG | - | chr4_3:44392288-44392307 | Msa0642660:CDS | 70.0% | |
| ! | GGCTGCTGCTCCGGCTTTGG+TGG | - | chr4_3:44392354-44392373 | Msa0642660:CDS | 70.0% |
| GGCAAACGCCGCGGCTGTCG+CGG | - | chr4_3:44392210-44392229 | Msa0642660:CDS | 75.0% | |
| GCTGTCGCGGCCCCGGATGA+AGG | - | chr4_3:44392223-44392242 | Msa0642660:CDS | 75.0% | |
| GGCAAACGCCGCGGCTGTCG+CGG | - | chr4_3:44392210-44392229 | Msa0642660:CDS | 75.0% | |
| GCTGTCGCGGCCCCGGATGA+AGG | - | chr4_3:44392223-44392242 | Msa0642660:CDS | 75.0% | |
| ! | GGCCGAGGCTGCTGCGGCAG+TGG | + | chr4_3:44391956-44391975 | None:intergenic | 80.0% |
| ! | ATCCGGGGCCGCGACAGCCG+CGG | + | chr4_3:44392221-44392240 | None:intergenic | 80.0% |
| ! | GGCCGAGGCTGCTGCGGCAG+TGG | + | chr4_3:44391956-44391975 | None:intergenic | 80.0% |
| ! | ATCCGGGGCCGCGACAGCCG+CGG | + | chr4_3:44392221-44392240 | None:intergenic | 80.0% |
| ! | CGCCGCGGCTGTCGCGGCCC+CGG | - | chr4_3:44392216-44392235 | Msa0642660:CDS | 90.0% |
| ! | CGCCGCGGCTGTCGCGGCCC+CGG | - | chr4_3:44392216-44392235 | Msa0642660:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 44391506 | 44392390 | 44391506 | ID=Msa0642660;Name=Msa0642660 |
| chr4_3 | mRNA | 44391506 | 44392390 | 44391506 | ID=Msa0642660-mRNA-1;Parent=Msa0642660;Name=Msa0642660-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|294 |
| chr4_3 | exon | 44391506 | 44392390 | 44391506 | ID=Msa0642660-mRNA-1:exon:10199;Parent=Msa0642660-mRNA-1 |
| chr4_3 | CDS | 44391506 | 44392390 | 44391506 | ID=Msa0642660-mRNA-1:cds;Parent=Msa0642660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
