Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642760 | XP_013455901.1 | 97.680 | 388 | 9 | 0 | 1 | 388 | 1 | 388 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642760 | sp|P36616|DSK1_SCHPO | 41.294 | 402 | 182 | 8 | 12 | 388 | 54 | 426 | 5.20e-94 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642760 | A0A072UJU0 | 97.680 | 388 | 9 | 0 | 1 | 388 | 1 | 388 | 0.0 | 793 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642760 | MtrunA17_Chr4g0027671 | 97.680 | 388 | 9 | 0 | 1 | 388 | 1 | 388 | 0.0 | 793 |
| Msa0642760 | MtrunA17_Chr2g0320631 | 80.157 | 383 | 70 | 3 | 8 | 388 | 9 | 387 | 0.0 | 598 |
| Msa0642760 | MtrunA17_Chr1g0179611 | 69.110 | 382 | 113 | 1 | 7 | 388 | 12 | 388 | 0.0 | 565 |
| Msa0642760 | MtrunA17_Chr5g0407121 | 47.849 | 372 | 129 | 5 | 18 | 388 | 17 | 324 | 1.34e-116 | 347 |
| Msa0642760 | MtrunA17_Chr8g0370321 | 46.612 | 369 | 130 | 4 | 20 | 388 | 19 | 320 | 3.28e-110 | 330 |
| Msa0642760 | MtrunA17_Chr3g0116701 | 36.943 | 157 | 92 | 4 | 24 | 180 | 80 | 229 | 1.09e-24 | 104 |
| Msa0642760 | MtrunA17_Chr3g0116701 | 44.262 | 61 | 34 | 0 | 319 | 379 | 259 | 319 | 4.55e-11 | 64.3 |
| Msa0642760 | MtrunA17_Chr3g0139371 | 35.227 | 176 | 105 | 5 | 5 | 180 | 43 | 209 | 9.06e-24 | 102 |
| Msa0642760 | MtrunA17_Chr3g0139371 | 45.902 | 61 | 33 | 0 | 319 | 379 | 238 | 298 | 1.69e-12 | 68.6 |
| Msa0642760 | MtrunA17_Chr4g0058241 | 36.306 | 157 | 93 | 4 | 24 | 180 | 84 | 233 | 9.77e-24 | 102 |
| Msa0642760 | MtrunA17_Chr8g0369241 | 37.589 | 141 | 82 | 3 | 39 | 178 | 139 | 274 | 4.75e-22 | 98.6 |
| Msa0642760 | MtrunA17_Chr8g0369241 | 51.667 | 60 | 29 | 0 | 317 | 376 | 283 | 342 | 6.18e-13 | 70.5 |
| Msa0642760 | MtrunA17_Chr3g0123491 | 31.765 | 170 | 106 | 5 | 14 | 180 | 66 | 228 | 2.16e-21 | 95.5 |
| Msa0642760 | MtrunA17_Chr3g0123491 | 40.323 | 62 | 37 | 0 | 318 | 379 | 259 | 320 | 6.49e-11 | 63.5 |
| Msa0642760 | MtrunA17_Chr1g0210061 | 32.065 | 184 | 103 | 7 | 1 | 178 | 582 | 749 | 2.17e-17 | 84.3 |
| Msa0642760 | MtrunA17_Chr5g0437131 | 37.162 | 148 | 84 | 3 | 37 | 180 | 401 | 543 | 1.45e-16 | 81.6 |
| Msa0642760 | MtrunA17_Chr6g0480541 | 35.811 | 148 | 86 | 4 | 37 | 180 | 896 | 1038 | 3.72e-15 | 77.8 |
| Msa0642760 | MtrunA17_Chr6g0480541 | 43.333 | 60 | 34 | 0 | 317 | 376 | 1043 | 1102 | 2.00e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642760 | AT3G53030.1 | 66.667 | 399 | 99 | 5 | 1 | 388 | 1 | 376 | 0.0 | 521 |
| Msa0642760 | AT3G44850.1 | 69.531 | 384 | 108 | 3 | 8 | 388 | 14 | 391 | 0.0 | 519 |
| Msa0642760 | AT5G22840.1 | 64.767 | 386 | 112 | 3 | 8 | 388 | 14 | 380 | 0.0 | 519 |
| Msa0642760 | AT4G35500.1 | 48.649 | 370 | 127 | 5 | 20 | 388 | 19 | 326 | 7.56e-117 | 347 |
| Msa0642760 | AT4G35500.2 | 46.092 | 371 | 136 | 6 | 20 | 388 | 19 | 327 | 1.53e-107 | 323 |
| Msa0642760 | AT2G17530.2 | 59.487 | 195 | 77 | 1 | 20 | 212 | 19 | 213 | 7.52e-81 | 252 |
| Msa0642760 | AT2G17530.2 | 59.259 | 81 | 33 | 0 | 308 | 388 | 245 | 325 | 1.21e-27 | 112 |
| Msa0642760 | AT2G17530.1 | 59.487 | 195 | 77 | 1 | 20 | 212 | 19 | 213 | 2.33e-79 | 251 |
| Msa0642760 | AT2G17530.1 | 59.259 | 81 | 33 | 0 | 308 | 388 | 245 | 325 | 6.00e-27 | 112 |
| Msa0642760 | AT2G17530.3 | 59.487 | 195 | 77 | 1 | 20 | 212 | 19 | 213 | 2.33e-79 | 251 |
| Msa0642760 | AT2G17530.3 | 59.259 | 81 | 33 | 0 | 308 | 388 | 245 | 325 | 6.00e-27 | 112 |
| Msa0642760 | AT4G24740.4 | 37.209 | 172 | 100 | 5 | 24 | 195 | 84 | 247 | 3.67e-26 | 107 |
| Msa0642760 | AT4G24740.3 | 37.209 | 172 | 100 | 5 | 24 | 195 | 84 | 247 | 7.13e-26 | 107 |
| Msa0642760 | AT4G24740.3 | 45.902 | 61 | 33 | 0 | 319 | 379 | 263 | 323 | 1.27e-11 | 65.9 |
| Msa0642760 | AT4G24740.7 | 37.209 | 172 | 100 | 5 | 24 | 195 | 46 | 209 | 1.34e-25 | 107 |
| Msa0642760 | AT4G24740.7 | 45.902 | 61 | 33 | 0 | 319 | 379 | 225 | 285 | 1.41e-11 | 65.9 |
| Msa0642760 | AT4G24740.1 | 37.209 | 172 | 100 | 5 | 24 | 195 | 84 | 247 | 2.09e-25 | 107 |
| Msa0642760 | AT4G24740.1 | 45.902 | 61 | 33 | 0 | 319 | 379 | 263 | 323 | 1.41e-11 | 66.2 |
| Msa0642760 | AT4G32660.2 | 37.107 | 159 | 93 | 4 | 22 | 180 | 55 | 206 | 1.61e-24 | 103 |
| Msa0642760 | AT4G32660.2 | 47.541 | 61 | 32 | 0 | 319 | 379 | 235 | 295 | 1.11e-11 | 66.2 |
| Msa0642760 | AT4G32660.3 | 37.107 | 159 | 93 | 4 | 22 | 180 | 47 | 198 | 2.10e-24 | 103 |
| Msa0642760 | AT4G32660.3 | 47.541 | 61 | 32 | 0 | 319 | 379 | 227 | 287 | 1.35e-11 | 66.2 |
| Msa0642760 | AT4G32660.1 | 37.107 | 159 | 93 | 4 | 22 | 180 | 55 | 206 | 2.12e-24 | 103 |
| Msa0642760 | AT4G32660.1 | 47.541 | 61 | 32 | 0 | 319 | 379 | 235 | 295 | 1.32e-11 | 66.2 |
| Msa0642760 | AT5G35980.3 | 37.584 | 149 | 87 | 3 | 39 | 186 | 87 | 230 | 9.00e-24 | 104 |
| Msa0642760 | AT5G35980.3 | 53.333 | 60 | 28 | 0 | 317 | 376 | 230 | 289 | 8.06e-13 | 70.9 |
| Msa0642760 | AT5G35980.1 | 37.584 | 149 | 87 | 3 | 39 | 186 | 122 | 265 | 9.32e-24 | 104 |
| Msa0642760 | AT5G35980.1 | 53.333 | 60 | 28 | 0 | 317 | 376 | 265 | 324 | 6.48e-13 | 70.9 |
| Msa0642760 | AT5G35980.2 | 37.584 | 149 | 87 | 3 | 39 | 186 | 122 | 265 | 1.49e-23 | 103 |
| Msa0642760 | AT5G35980.2 | 53.333 | 60 | 28 | 0 | 317 | 376 | 265 | 324 | 7.43e-13 | 70.9 |
| Msa0642760 | AT4G24740.5 | 37.748 | 151 | 87 | 4 | 45 | 195 | 1 | 144 | 2.91e-23 | 97.8 |
| Msa0642760 | AT4G24740.5 | 45.902 | 61 | 33 | 0 | 319 | 379 | 160 | 220 | 6.16e-12 | 65.5 |
| Msa0642760 | AT4G24740.6 | 37.748 | 151 | 87 | 4 | 45 | 195 | 1 | 144 | 1.13e-22 | 98.2 |
| Msa0642760 | AT4G24740.6 | 45.902 | 61 | 33 | 0 | 319 | 379 | 160 | 220 | 9.57e-12 | 66.2 |
| Msa0642760 | AT4G24740.9 | 37.748 | 151 | 87 | 4 | 45 | 195 | 1 | 144 | 1.13e-22 | 98.2 |
| Msa0642760 | AT4G24740.9 | 45.902 | 61 | 33 | 0 | 319 | 379 | 160 | 220 | 9.57e-12 | 66.2 |
| Msa0642760 | AT4G24740.2 | 37.748 | 151 | 87 | 4 | 45 | 195 | 1 | 144 | 1.13e-22 | 98.2 |
| Msa0642760 | AT4G24740.2 | 45.902 | 61 | 33 | 0 | 319 | 379 | 160 | 220 | 9.57e-12 | 66.2 |
| Msa0642760 | AT3G53570.1 | 35.669 | 157 | 94 | 4 | 24 | 180 | 101 | 250 | 7.05e-22 | 97.4 |
| Msa0642760 | AT3G53570.1 | 41.935 | 62 | 36 | 0 | 318 | 379 | 281 | 342 | 3.90e-11 | 65.1 |
| Msa0642760 | AT3G53570.4 | 35.669 | 157 | 94 | 4 | 24 | 180 | 101 | 250 | 7.05e-22 | 97.4 |
| Msa0642760 | AT3G53570.4 | 41.935 | 62 | 36 | 0 | 318 | 379 | 281 | 342 | 3.90e-11 | 65.1 |
| Msa0642760 | AT3G53570.2 | 35.669 | 157 | 94 | 4 | 24 | 180 | 101 | 250 | 7.05e-22 | 97.4 |
| Msa0642760 | AT3G53570.2 | 41.935 | 62 | 36 | 0 | 318 | 379 | 281 | 342 | 3.90e-11 | 65.1 |
| Msa0642760 | AT3G53570.3 | 35.669 | 157 | 94 | 4 | 24 | 180 | 87 | 236 | 9.26e-22 | 97.1 |
| Msa0642760 | AT3G53570.3 | 41.935 | 62 | 36 | 0 | 318 | 379 | 267 | 328 | 4.18e-11 | 64.7 |
| Msa0642760 | AT3G53570.5 | 35.669 | 157 | 94 | 4 | 24 | 180 | 87 | 236 | 9.26e-22 | 97.1 |
| Msa0642760 | AT3G53570.5 | 41.935 | 62 | 36 | 0 | 318 | 379 | 267 | 328 | 4.18e-11 | 64.7 |
| Msa0642760 | AT1G13350.1 | 33.540 | 161 | 96 | 5 | 24 | 179 | 428 | 582 | 8.08e-17 | 82.8 |
| Msa0642760 | AT1G13350.2 | 33.540 | 161 | 96 | 5 | 24 | 179 | 455 | 609 | 1.05e-16 | 82.8 |
| Msa0642760 | AT1G13350.3 | 33.540 | 161 | 96 | 5 | 24 | 179 | 501 | 655 | 1.77e-16 | 82.0 |
| Msa0642760 | AT3G25840.1 | 31.677 | 161 | 99 | 5 | 24 | 179 | 603 | 757 | 1.25e-14 | 76.3 |
| Msa0642760 | AT2G40120.1 | 35.135 | 148 | 87 | 3 | 37 | 180 | 259 | 401 | 1.27e-14 | 75.9 |
| Msa0642760 | AT1G73460.2 | 35.135 | 148 | 87 | 4 | 37 | 180 | 856 | 998 | 2.55e-14 | 75.5 |
| Msa0642760 | AT1G73460.1 | 35.135 | 148 | 87 | 4 | 37 | 180 | 856 | 998 | 2.55e-14 | 75.5 |
| Msa0642760 | AT1G73450.1 | 35.135 | 148 | 87 | 4 | 37 | 180 | 839 | 981 | 3.12e-14 | 75.1 |
| Msa0642760 | AT3G25840.2 | 31.677 | 161 | 99 | 5 | 24 | 179 | 341 | 495 | 3.29e-14 | 74.7 |
| Msa0642760 | AT3G17750.1 | 33.784 | 148 | 89 | 3 | 37 | 180 | 825 | 967 | 6.17e-14 | 74.3 |
| Msa0642760 | AT3G53640.1 | 30.220 | 182 | 107 | 6 | 3 | 179 | 297 | 463 | 6.37e-14 | 73.9 |
| Msa0642760 | AT4G32660.4 | 37.000 | 100 | 57 | 3 | 81 | 180 | 1 | 94 | 5.73e-13 | 69.3 |
| Msa0642760 | AT4G32660.4 | 47.541 | 61 | 32 | 0 | 319 | 379 | 123 | 183 | 8.25e-12 | 65.9 |
| Msa0642760 | AT4G24740.10 | 45.902 | 61 | 33 | 0 | 319 | 379 | 57 | 117 | 2.07e-12 | 66.6 |
| Msa0642760 | AT4G24740.8 | 45.902 | 61 | 33 | 0 | 319 | 379 | 57 | 117 | 2.07e-12 | 66.6 |
Find 94 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAATGAATCTGAGATTT+TGG | 0.104333 | 4_3:+44803760 | None:intergenic |
| CTAATTGAAAAGGGAAATTT+TGG | 0.123674 | 4_3:+44803836 | None:intergenic |
| ATAATCCAAAACAGTAAAAT+TGG | 0.192415 | 4_3:-44801664 | Msa0642760:CDS |
| TTGGATCACTTCAAGCATTC+AGG | 0.225873 | 4_3:-44801979 | Msa0642760:CDS |
| AACTTTACTCGAAGAGCTAT+TGG | 0.245290 | 4_3:+44801468 | None:intergenic |
| AAGTGCAAGCTGGTTGATTT+TGG | 0.274103 | 4_3:-44801343 | Msa0642760:CDS |
| TTTCTACTGTTTGGCTTGCT+TGG | 0.286757 | 4_3:-44803584 | Msa0642760:CDS |
| TTCTACTGTTTGGCTTGCTT+GGG | 0.313798 | 4_3:-44803583 | Msa0642760:CDS |
| ATTGTTGAAGTGATTGAAAA+TGG | 0.319934 | 4_3:+44803788 | None:intergenic |
| TTCTTATGACCATCGTTTCC+TGG | 0.324044 | 4_3:+44801412 | None:intergenic |
| AGGTGTCCTGAGGTTCTTCT+TGG | 0.337399 | 4_3:-44801265 | Msa0642760:CDS |
| AAGGAAAGTCCAGAGGAATC+TGG | 0.359071 | 4_3:-44801565 | Msa0642760:CDS |
| AAAATGTGTTGTGAAGCTTT+TGG | 0.362109 | 4_3:-44801998 | Msa0642760:CDS |
| TGTTCAATCTAAGCTTGGTT+GGG | 0.363107 | 4_3:-44803613 | Msa0642760:CDS |
| GATTTCCTTGGATCCTTTGA+CGG | 0.395707 | 4_3:+44801742 | None:intergenic |
| ACTTTACTCGAAGAGCTATT+GGG | 0.402890 | 4_3:+44801469 | None:intergenic |
| TGGATCACTTCAAGCATTCA+GGG | 0.408279 | 4_3:-44801978 | Msa0642760:CDS |
| GTAGTTTCTTAGTACGATAC+AGG | 0.410447 | 4_3:+44801118 | None:intergenic |
| ATATTCAAACAAGGCAATAT+AGG | 0.414165 | 4_3:-44801285 | Msa0642760:CDS |
| AGTGAAAACCCTAATTGAAA+AGG | 0.415559 | 4_3:+44803826 | None:intergenic |
| ACAGTGGTGACAACTATGAT+AGG | 0.429417 | 4_3:-44801156 | Msa0642760:CDS |
| GATAGTCACTATATTTGATA+AGG | 0.433753 | 4_3:+44801899 | None:intergenic |
| ATCTGCTTTGAGCTTGCCAC+TGG | 0.441460 | 4_3:-44801199 | Msa0642760:CDS |
| TTGGTGTTTGGAAGGATAAG+TGG | 0.442157 | 4_3:+44801712 | None:intergenic |
| TTCAAGCATTCAGGGCCTAA+TGG | 0.442522 | 4_3:-44801970 | Msa0642760:CDS |
| TTCTTCTCCTGGTTCTTCGT+CGG | 0.444681 | 4_3:+44801631 | None:intergenic |
| TTGTTACAATTATCCTGCTC+AGG | 0.444711 | 4_3:+44801526 | None:intergenic |
| AGGAAAGTCCAGAGGAATCT+GGG | 0.452844 | 4_3:-44801564 | Msa0642760:CDS |
| TCAAAGGATCCAAGGAAATC+AGG | 0.454737 | 4_3:-44801739 | Msa0642760:CDS |
| AAATGAAGGGAAAGGGTAAG+AGG | 0.459156 | 4_3:-44801609 | Msa0642760:CDS |
| TAATCCAAAACAGTAAAATT+GGG | 0.461577 | 4_3:-44801663 | Msa0642760:CDS |
| TAATGGCGTGCATGTGTGTA+TGG | 0.464665 | 4_3:-44801953 | Msa0642760:CDS |
| GTTCAATCTAAGCTTGGTTG+GGG | 0.469698 | 4_3:-44803612 | Msa0642760:CDS |
| CAATCATCCCCAGATTCCTC+TGG | 0.469706 | 4_3:+44801556 | None:intergenic |
| GAATGAAGTAACACATTCTC+AGG | 0.471207 | 4_3:+44801775 | None:intergenic |
| TGCCAGCAGCTTCTTTCTCA+TGG | 0.472338 | 4_3:+44801378 | None:intergenic |
| TATGTTGTTCAATCTAAGCT+TGG | 0.476981 | 4_3:-44803618 | Msa0642760:CDS |
| TTGAAGTGAATGGAGAGAAA+AGG | 0.480238 | 4_3:-44803741 | Msa0642760:exon |
| AGTGGAGCACCTGATTTCCT+TGG | 0.486223 | 4_3:+44801730 | None:intergenic |
| ATAGTCACTATATTTGATAA+GGG | 0.487347 | 4_3:+44801900 | None:intergenic |
| TTGTTCAATCTAAGCTTGGT+TGG | 0.493944 | 4_3:-44803614 | Msa0642760:CDS |
| AATGAAGGGAAAGGGTAAGA+GGG | 0.494221 | 4_3:-44801608 | Msa0642760:CDS |
| ATGAAGGCACTGAACACTAT+AGG | 0.497035 | 4_3:-44803692 | Msa0642760:CDS |
| GAACCAGGAGAAGAAAATGA+AGG | 0.498186 | 4_3:-44801623 | Msa0642760:CDS |
| GTGAAAACCCTAATTGAAAA+GGG | 0.499161 | 4_3:+44803827 | None:intergenic |
| GCAAAGGACCACATATCTGC+TGG | 0.503873 | 4_3:+44801226 | None:intergenic |
| TGGAGATCCGACGAAGAACC+AGG | 0.506120 | 4_3:-44801638 | Msa0642760:CDS |
| CAAAACAGTAAAATTGGGAA+TGG | 0.514220 | 4_3:-44801658 | Msa0642760:CDS |
| ATCAACACAGACCACTGAAA+AGG | 0.529361 | 4_3:-44801443 | Msa0642760:CDS |
| ACTGAAAAGGACCTTGCACC+AGG | 0.530605 | 4_3:-44801430 | Msa0642760:CDS |
| GGCTCAAGGCTGTGTTGAGA+AGG | 0.533237 | 4_3:-44801584 | Msa0642760:CDS |
| TGCTTGGGATACTCTCAAAT+CGG | 0.534960 | 4_3:-44803568 | Msa0642760:intron |
| GACCATCGTTTCCTGGTGCA+AGG | 0.537763 | 4_3:+44801419 | None:intergenic |
| TGATTGTAAAGAACCTGAGC+AGG | 0.542237 | 4_3:-44801539 | Msa0642760:CDS |
| TTCACTGATTGATCCGTCAA+AGG | 0.543734 | 4_3:-44801755 | Msa0642760:CDS |
| ATACACACATGCACGCCATT+AGG | 0.544060 | 4_3:+44801955 | None:intergenic |
| AAAACATATCTCTTTAACCA+TGG | 0.544485 | 4_3:+44801861 | None:intergenic |
| ACACTACACTGAAGCTGCAA+TGG | 0.544944 | 4_3:-44802070 | Msa0642760:CDS |
| GAGAAGAAAATGAAGGGAAA+GGG | 0.549231 | 4_3:-44801616 | Msa0642760:CDS |
| CTTGGTGATGCTTTCAACAA+TGG | 0.554279 | 4_3:-44803645 | Msa0642760:CDS |
| AACCAGGAGAAGAAAATGAA+GGG | 0.561030 | 4_3:-44801622 | Msa0642760:CDS |
| GCAGCTTCTTTCTCATGGAA+CGG | 0.565762 | 4_3:+44801383 | None:intergenic |
| GGAGAAGAAAATGAAGGGAA+AGG | 0.568087 | 4_3:-44801617 | Msa0642760:CDS |
| TTAGAACCAAGAAGAACCTC+AGG | 0.569982 | 4_3:+44801259 | None:intergenic |
| GGGTACCATGCTGTGAAACT+TGG | 0.570597 | 4_3:-44803663 | Msa0642760:CDS |
| TTCCATGAGAAAGAAGCTGC+TGG | 0.571340 | 4_3:-44801380 | Msa0642760:CDS |
| ACTCAACTCCAGCAGATATG+TGG | 0.578886 | 4_3:-44801234 | Msa0642760:CDS |
| TGTTGATCTTAAGTGCAAGC+TGG | 0.579496 | 4_3:-44801353 | Msa0642760:CDS |
| AAGGGTAAGAGGGTGGCTCA+AGG | 0.581871 | 4_3:-44801598 | Msa0642760:CDS |
| ATTCTCAAACAAATTGAAGA+GGG | 0.586563 | 4_3:-44802036 | Msa0642760:CDS |
| TCGTGGAGTTCCTCTCTCCA+TGG | 0.586905 | 4_3:-44801878 | Msa0642760:CDS |
| CAGTGGTGACAACTATGATA+GGG | 0.596335 | 4_3:-44801155 | Msa0642760:CDS |
| CTCAAAGCAGATGCAAGCAA+AGG | 0.596681 | 4_3:+44801210 | None:intergenic |
| TAGTTTCTTAGTACGATACA+GGG | 0.600981 | 4_3:+44801119 | None:intergenic |
| GATTCTCAAACAAATTGAAG+AGG | 0.602574 | 4_3:-44802037 | Msa0642760:CDS |
| GATTACAGTTCAGAAGATGA+AGG | 0.604759 | 4_3:-44803708 | Msa0642760:CDS |
| TTGATCCGTCAAAGGATCCA+AGG | 0.613694 | 4_3:-44801747 | Msa0642760:CDS |
| CTGAACACTATAGGCGTGGT+GGG | 0.618949 | 4_3:-44803683 | Msa0642760:CDS |
| GACCTTGCACCAGGAAACGA+TGG | 0.630623 | 4_3:-44801421 | Msa0642760:CDS |
| ATCAAATATAGTGACTATCG+TGG | 0.632403 | 4_3:-44801895 | Msa0642760:CDS |
| TGACAACTATGATAGGGATG+AGG | 0.636106 | 4_3:-44801149 | Msa0642760:CDS |
| ATCTCTTTAACCATGGAGAG+AGG | 0.638691 | 4_3:+44801868 | None:intergenic |
| GGCACTGAACACTATAGGCG+TGG | 0.643173 | 4_3:-44803687 | Msa0642760:CDS |
| GAAGGGAAAGGGTAAGAGGG+TGG | 0.647195 | 4_3:-44801605 | Msa0642760:CDS |
| CATCACCAAGTTTCACAGCA+TGG | 0.653174 | 4_3:+44803658 | None:intergenic |
| GATTATGTCATTATTAGACA+CGG | 0.653569 | 4_3:+44801681 | None:intergenic |
| GGAAAGTCCAGAGGAATCTG+GGG | 0.668122 | 4_3:-44801563 | Msa0642760:CDS |
| GGGTGAGAAGATTATCACCA+AGG | 0.668408 | 4_3:+44801920 | None:intergenic |
| ACTGAACACTATAGGCGTGG+TGG | 0.679549 | 4_3:-44803684 | Msa0642760:CDS |
| TCACAAATGATATTCAAACA+AGG | 0.699139 | 4_3:-44801294 | Msa0642760:CDS |
| TGTTGAGAAGGAAAGTCCAG+AGG | 0.713136 | 4_3:-44801572 | Msa0642760:CDS |
| TCATAGTTGTCACCACTGTG+AGG | 0.714384 | 4_3:+44801160 | None:intergenic |
| AGTTTCTTAGTACGATACAG+GGG | 0.727282 | 4_3:+44801120 | None:intergenic |
| AAGGCAATATAGGTGTCCTG+AGG | 0.731682 | 4_3:-44801275 | Msa0642760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTCTTTAAATTAAAAA+AGG | - | chr4_3:44802249-44802268 | Msa0642760:intron | 10.0% |
| !! | AAACAAAAACAACAAAAAAA+AGG | + | chr4_3:44801511-44801530 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTGTTTTTGTTTT+TGG | - | chr4_3:44801512-44801531 | Msa0642760:CDS | 15.0% |
| !! | TTCAAAATGCAAAATATATA+GGG | - | chr4_3:44801736-44801755 | Msa0642760:CDS | 15.0% |
| !!! | TTTTTTTTTTTTTTTTCCGT+AGG | + | chr4_3:44801920-44801939 | None:intergenic | 15.0% |
| !! | GGAAAAAAAAAAAAAAAACT+AGG | - | chr4_3:44801922-44801941 | Msa0642760:CDS | 15.0% |
| !!! | TAATTGAAAAGGGAAATTTT+GGG | + | chr4_3:44801182-44801201 | None:intergenic | 20.0% |
| !!! | AAAATTTCCCTTTTCAATTA+GGG | - | chr4_3:44801182-44801201 | Msa0642760:CDS | 20.0% |
| !! | AAACAATGAAGTTGTTAAAA+AGG | + | chr4_3:44801483-44801502 | None:intergenic | 20.0% |
| !! | CGTAATTTCATAATTACTAA+CGG | + | chr4_3:44801589-44801608 | None:intergenic | 20.0% |
| !!! | TGGTGTAAAAAGATTTTTTT+AGG | - | chr4_3:44801711-44801730 | Msa0642760:CDS | 20.0% |
| !!! | GGTGTAAAAAGATTTTTTTA+GGG | - | chr4_3:44801712-44801731 | Msa0642760:CDS | 20.0% |
| !!! | GTGTAAAAAGATTTTTTTAG+GGG | - | chr4_3:44801713-44801732 | Msa0642760:CDS | 20.0% |
| !! | GTTCAAAATGCAAAATATAT+AGG | - | chr4_3:44801735-44801754 | Msa0642760:CDS | 20.0% |
| !! | ATTGTAATAACCTTGAAAAT+AGG | - | chr4_3:44801947-44801966 | Msa0642760:CDS | 20.0% |
| !!! | AAATATAAGAGTCTGTATTT+TGG | - | chr4_3:44802461-44802480 | Msa0642760:intron | 20.0% |
| !! | AATAAGCAAAACAATTGTAA+AGG | + | chr4_3:44802646-44802665 | None:intergenic | 20.0% |
| !! | ATAGTCACTATATTTGATAA+GGG | + | chr4_3:44803119-44803138 | None:intergenic | 20.0% |
| !! | ATAATCCAAAACAGTAAAAT+TGG | - | chr4_3:44803352-44803371 | Msa0642760:intron | 20.0% |
| !! | TAATCCAAAACAGTAAAATT+GGG | - | chr4_3:44803353-44803372 | Msa0642760:intron | 20.0% |
| !! | ATTCATATTTCACATTTTCC+CGG | - | chr4_3:44801134-44801153 | Msa0642760:CDS | 25.0% |
| !! | AATTGAAAAGGGAAATTTTG+GGG | + | chr4_3:44801181-44801200 | None:intergenic | 25.0% |
| !! | CTAATTGAAAAGGGAAATTT+TGG | + | chr4_3:44801183-44801202 | None:intergenic | 25.0% |
| !! | CAAAATTTCCCTTTTCAATT+AGG | - | chr4_3:44801181-44801200 | Msa0642760:CDS | 25.0% |
| ! | ATTGTTGAAGTGATTGAAAA+TGG | + | chr4_3:44801231-44801250 | None:intergenic | 25.0% |
| !! | TTTTCAATCACTTCAACAAT+TGG | - | chr4_3:44801231-44801250 | Msa0642760:CDS | 25.0% |
| !!! | TCAAAATGAATCTGAGATTT+TGG | + | chr4_3:44801259-44801278 | None:intergenic | 25.0% |
| ! | TGTAGAAATAGTAATCAATG+TGG | - | chr4_3:44801622-44801641 | Msa0642760:CDS | 25.0% |
| ! | GTAGAAATAGTAATCAATGT+GGG | - | chr4_3:44801623-44801642 | Msa0642760:CDS | 25.0% |
| !!! | GTTCAAACTTTTGAGTTATA+GGG | - | chr4_3:44801684-44801703 | Msa0642760:CDS | 25.0% |
| !!! | TGCATTGCTTTTTAAAGTTT+AGG | - | chr4_3:44801766-44801785 | Msa0642760:CDS | 25.0% |
| !!! | GCATTGCTTTTTAAAGTTTA+GGG | - | chr4_3:44801767-44801786 | Msa0642760:CDS | 25.0% |
| !!! | CATTGCTTTTTAAAGTTTAG+GGG | - | chr4_3:44801768-44801787 | Msa0642760:CDS | 25.0% |
| !!! | ATTGCTTTTTAAAGTTTAGG+GGG | - | chr4_3:44801769-44801788 | Msa0642760:CDS | 25.0% |
| !! | ATCTAACATGGGATTATTTT+CGG | - | chr4_3:44801885-44801904 | Msa0642760:CDS | 25.0% |
| !! | CATTTTACTTCCTATTTTCA+AGG | + | chr4_3:44801960-44801979 | None:intergenic | 25.0% |
| ! | CTTGAAAATAGGAAGTAAAA+TGG | - | chr4_3:44801958-44801977 | Msa0642760:CDS | 25.0% |
| !! | GGTAATGTGTTCTATATTTT+TGG | + | chr4_3:44802012-44802031 | None:intergenic | 25.0% |
| ! | AAAAAATATGCAACTGCATA+TGG | + | chr4_3:44802042-44802061 | None:intergenic | 25.0% |
| !!! | ATGCAGTTGCATATTTTTTT+TGG | - | chr4_3:44802043-44802062 | Msa0642760:CDS | 25.0% |
| ! | TGATACTAATGTGATATCAA+GGG | + | chr4_3:44802325-44802344 | None:intergenic | 25.0% |
| ! | TTGATACTAATGTGATATCA+AGG | + | chr4_3:44802326-44802345 | None:intergenic | 25.0% |
| ! | TTGACGTTCTTCAAATAAAA+GGG | + | chr4_3:44802549-44802568 | None:intergenic | 25.0% |
| ! | ATTGACGTTCTTCAAATAAA+AGG | + | chr4_3:44802550-44802569 | None:intergenic | 25.0% |
| ! | CAATCAAAATTCAAAACCAA+TGG | - | chr4_3:44802566-44802585 | Msa0642760:intron | 25.0% |
| !! | ATTGACTGATGTTTGATTTA+AGG | - | chr4_3:44802686-44802705 | Msa0642760:intron | 25.0% |
| !! | TTGACTGATGTTTGATTTAA+GGG | - | chr4_3:44802687-44802706 | Msa0642760:intron | 25.0% |
| !!! | AATTGCTATTTTGAAATTCG+AGG | - | chr4_3:44802714-44802733 | Msa0642760:intron | 25.0% |
| !!! | ATTGCTATTTTGAAATTCGA+GGG | - | chr4_3:44802715-44802734 | Msa0642760:intron | 25.0% |
| ! | AATCCAAAAATATCAGGTAA+GGG | + | chr4_3:44802850-44802869 | None:intergenic | 25.0% |
| ! | AAATCCAAAAATATCAGGTA+AGG | + | chr4_3:44802851-44802870 | None:intergenic | 25.0% |
| ! | TTCAGAAATCCAAAAATATC+AGG | + | chr4_3:44802856-44802875 | None:intergenic | 25.0% |
| ! | ATTCTCAAACAAATTGAAGA+GGG | - | chr4_3:44802980-44802999 | Msa0642760:intron | 25.0% |
| ! | GATAGTCACTATATTTGATA+AGG | + | chr4_3:44803120-44803139 | None:intergenic | 25.0% |
| ! | AAAACATATCTCTTTAACCA+TGG | + | chr4_3:44803158-44803177 | None:intergenic | 25.0% |
| !! | ATATGTTTTCATGTTCTAGT+GGG | - | chr4_3:44803169-44803188 | Msa0642760:intron | 25.0% |
| ! | GATTATGTCATTATTAGACA+CGG | + | chr4_3:44803338-44803357 | None:intergenic | 25.0% |
| ! | TCACAAATGATATTCAAACA+AGG | - | chr4_3:44803722-44803741 | Msa0642760:CDS | 25.0% |
| ! | ATATTCAAACAAGGCAATAT+AGG | - | chr4_3:44803731-44803750 | Msa0642760:CDS | 25.0% |
| GTGAAAACCCTAATTGAAAA+GGG | + | chr4_3:44801192-44801211 | None:intergenic | 30.0% | |
| AGTGAAAACCCTAATTGAAA+AGG | + | chr4_3:44801193-44801212 | None:intergenic | 30.0% | |
| !!! | CAGATTCATTTTGAAGTGAA+TGG | - | chr4_3:44801265-44801284 | Msa0642760:CDS | 30.0% |
| TATGTTGTTCAATCTAAGCT+TGG | - | chr4_3:44801398-44801417 | Msa0642760:CDS | 30.0% | |
| AAATAGTAATCAATGTGGGT+TGG | - | chr4_3:44801627-44801646 | Msa0642760:CDS | 30.0% | |
| AATAGTAATCAATGTGGGTT+GGG | - | chr4_3:44801628-44801647 | Msa0642760:CDS | 30.0% | |
| !!! | GGTTCAAACTTTTGAGTTAT+AGG | - | chr4_3:44801683-44801702 | Msa0642760:CDS | 30.0% |
| !! | GGCTTGTTGGTTAATAATAT+TGG | - | chr4_3:44802421-44802440 | Msa0642760:intron | 30.0% |
| ! | CTCAACTTTTACAAATTTCC+AGG | + | chr4_3:44802488-44802507 | None:intergenic | 30.0% |
| !! | TTGCTGTTTCATATGTTTGA+GGG | + | chr4_3:44802520-44802539 | None:intergenic | 30.0% |
| !! | TTTGCTGTTTCATATGTTTG+AGG | + | chr4_3:44802521-44802540 | None:intergenic | 30.0% |
| TCTAGTCCTTCAAATTGTAA+GGG | + | chr4_3:44802755-44802774 | None:intergenic | 30.0% | |
| TTCTAGTCCTTCAAATTGTA+AGG | + | chr4_3:44802756-44802775 | None:intergenic | 30.0% | |
| ! | TTACCCTTACCTGATATTTT+TGG | - | chr4_3:44802844-44802863 | Msa0642760:intron | 30.0% |
| TCTGAACTCTGTTAATGATT+TGG | - | chr4_3:44802870-44802889 | Msa0642760:intron | 30.0% | |
| !! | TTTTTGTTTGTAGCGTTATG+TGG | - | chr4_3:44802898-44802917 | Msa0642760:intron | 30.0% |
| GATTCTCAAACAAATTGAAG+AGG | - | chr4_3:44802979-44802998 | Msa0642760:intron | 30.0% | |
| !!! | CAACACATTTTTTGTCATCA+GGG | + | chr4_3:44803009-44803028 | None:intergenic | 30.0% |
| !!! | ACAACACATTTTTTGTCATC+AGG | + | chr4_3:44803010-44803029 | None:intergenic | 30.0% |
| ! | AAAATGTGTTGTGAAGCTTT+TGG | - | chr4_3:44803018-44803037 | Msa0642760:intron | 30.0% |
| ! | TGTATGGTTTTTGAATTCCT+TGG | - | chr4_3:44803079-44803098 | Msa0642760:intron | 30.0% |
| ATCAAATATAGTGACTATCG+TGG | - | chr4_3:44803121-44803140 | Msa0642760:intron | 30.0% | |
| ! | GATATGTTTTCATGTTCTAG+TGG | - | chr4_3:44803168-44803187 | Msa0642760:intron | 30.0% |
| !!! | ACTTATTTTTGGTGTTTGGA+AGG | + | chr4_3:44803315-44803334 | None:intergenic | 30.0% |
| !! | ATTAGACACGGACTTATTTT+TGG | + | chr4_3:44803326-44803345 | None:intergenic | 30.0% |
| ! | CATTCCCAATTTTACTGTTT+TGG | + | chr4_3:44803360-44803379 | None:intergenic | 30.0% |
| CAAAACAGTAAAATTGGGAA+TGG | - | chr4_3:44803358-44803377 | Msa0642760:intron | 30.0% | |
| !!! | TTGATTTTGGTAATGCTTGT+TGG | - | chr4_3:44803686-44803705 | Msa0642760:CDS | 30.0% |
| !! | AAGGGAAATTTTGGGGATTA+GGG | + | chr4_3:44801174-44801193 | None:intergenic | 35.0% |
| !! | AAAGGGAAATTTTGGGGATT+AGG | + | chr4_3:44801175-44801194 | None:intergenic | 35.0% |
| TTGAAGTGAATGGAGAGAAA+AGG | - | chr4_3:44801275-44801294 | Msa0642760:CDS | 35.0% | |
| GATTACAGTTCAGAAGATGA+AGG | - | chr4_3:44801308-44801327 | Msa0642760:CDS | 35.0% | |
| TTGTTCAATCTAAGCTTGGT+TGG | - | chr4_3:44801402-44801421 | Msa0642760:CDS | 35.0% | |
| TGTTCAATCTAAGCTTGGTT+GGG | - | chr4_3:44801403-44801422 | Msa0642760:CDS | 35.0% | |
| AAGTTTGAACCTCTAGATCA+AGG | + | chr4_3:44801674-44801693 | None:intergenic | 35.0% | |
| ACCCACATTTGTATCTAACA+TGG | - | chr4_3:44801873-44801892 | Msa0642760:CDS | 35.0% | |
| CCCATGTTAGATACAAATGT+GGG | + | chr4_3:44801877-44801896 | None:intergenic | 35.0% | |
| CCCACATTTGTATCTAACAT+GGG | - | chr4_3:44801874-44801893 | Msa0642760:CDS | 35.0% | |
| TCCCATGTTAGATACAAATG+TGG | + | chr4_3:44801878-44801897 | None:intergenic | 35.0% | |
| ! | TTTTCGGTTGAAGAAACCTA+CGG | - | chr4_3:44801901-44801920 | Msa0642760:CDS | 35.0% |
| !!! | TTTTGGTAATGATGCACACT+TGG | - | chr4_3:44802060-44802079 | Msa0642760:CDS | 35.0% |
| !! | TTTGGTAATGATGCACACTT+GGG | - | chr4_3:44802061-44802080 | Msa0642760:CDS | 35.0% |
| TAGTGAAATCATTTCCCCTT+CGG | - | chr4_3:44802356-44802375 | Msa0642760:intron | 35.0% | |
| TGGGAAAAAAATACACCGAA+GGG | + | chr4_3:44802374-44802393 | None:intergenic | 35.0% | |
| !!! | CTATTTTGAAATTCGAGGGA+CGG | - | chr4_3:44802719-44802738 | Msa0642760:intron | 35.0% |
| ! | CGCGCTCTTTTGAATTTTAA+GGG | + | chr4_3:44802924-44802943 | None:intergenic | 35.0% |
| GAATGAAGTAACACATTCTC+AGG | + | chr4_3:44803244-44803263 | None:intergenic | 35.0% | |
| !!! | ACGGACTTATTTTTGGTGTT+TGG | + | chr4_3:44803319-44803338 | None:intergenic | 35.0% |
| AACCAGGAGAAGAAAATGAA+GGG | - | chr4_3:44803394-44803413 | Msa0642760:intron | 35.0% | |
| GAGAAGAAAATGAAGGGAAA+GGG | - | chr4_3:44803400-44803419 | Msa0642760:intron | 35.0% | |
| TTGTTACAATTATCCTGCTC+AGG | + | chr4_3:44803493-44803512 | None:intergenic | 35.0% | |
| ! | GTTTTCAACAGATTCTACAC+TGG | + | chr4_3:44803524-44803543 | None:intergenic | 35.0% |
| ACTTTACTCGAAGAGCTATT+GGG | + | chr4_3:44803550-44803569 | None:intergenic | 35.0% | |
| AACTTTACTCGAAGAGCTAT+TGG | + | chr4_3:44803551-44803570 | None:intergenic | 35.0% | |
| ATCAAAAAGAACATCACCAG+TGG | + | chr4_3:44803836-44803855 | None:intergenic | 35.0% | |
| !!! | TAGGGTTTTGATAGTGTTGC+CGG | + | chr4_3:44801156-44801175 | None:intergenic | 40.0% |
| !! | ATGAAGGCACTGAACACTAT+AGG | - | chr4_3:44801324-44801343 | Msa0642760:CDS | 40.0% |
| !! | CTTGGTGATGCTTTCAACAA+TGG | - | chr4_3:44801371-44801390 | Msa0642760:CDS | 40.0% |
| GTTCAATCTAAGCTTGGTTG+GGG | - | chr4_3:44801404-44801423 | Msa0642760:CDS | 40.0% | |
| !!! | GGGGTCATTTTTCTACTGTT+TGG | - | chr4_3:44801423-44801442 | Msa0642760:CDS | 40.0% |
| !! | TTTCTACTGTTTGGCTTGCT+TGG | - | chr4_3:44801432-44801451 | Msa0642760:CDS | 40.0% |
| !! | TTCTACTGTTTGGCTTGCTT+GGG | - | chr4_3:44801433-44801452 | Msa0642760:CDS | 40.0% |
| TGCTTGGGATACTCTCAAAT+CGG | - | chr4_3:44801448-44801467 | Msa0642760:CDS | 40.0% | |
| GATGTGTTCGTCGTTGATAT+CGG | - | chr4_3:44801547-44801566 | Msa0642760:CDS | 40.0% | |
| ATGTGTTCGTCGTTGATATC+GGG | - | chr4_3:44801548-44801567 | Msa0642760:CDS | 40.0% | |
| TATTCAGGACCTTGATCTAG+AGG | - | chr4_3:44801662-44801681 | Msa0642760:CDS | 40.0% | |
| !!! | CTTTTGAGTTATAGGGCTAG+TGG | - | chr4_3:44801691-44801710 | Msa0642760:CDS | 40.0% |
| ! | AGAATCTAGCTCATTTGAGG+TGG | + | chr4_3:44801805-44801824 | None:intergenic | 40.0% |
| ! | GGAAGAATCTAGCTCATTTG+AGG | + | chr4_3:44801808-44801827 | None:intergenic | 40.0% |
| GCGAAACAAGGTTTGAATCT+CGG | - | chr4_3:44801839-44801858 | Msa0642760:CDS | 40.0% | |
| GCAACTGCATATGGATATGT+AGG | + | chr4_3:44802033-44802052 | None:intergenic | 40.0% | |
| !! | TTGGTAATGATGCACACTTG+GGG | - | chr4_3:44802062-44802081 | Msa0642760:CDS | 40.0% |
| ! | GTGATATCAAGGGTGTGTTT+GGG | + | chr4_3:44802315-44802334 | None:intergenic | 40.0% |
| ! | TGTGATATCAAGGGTGTGTT+TGG | + | chr4_3:44802316-44802335 | None:intergenic | 40.0% |
| GGGAAAAAAATACACCGAAG+GGG | + | chr4_3:44802373-44802392 | None:intergenic | 40.0% | |
| GTGGGAAAAAAATACACCGA+AGG | + | chr4_3:44802375-44802394 | None:intergenic | 40.0% | |
| !!! | AAGAGTCTGTATTTTGGTCC+TGG | - | chr4_3:44802467-44802486 | Msa0642760:intron | 40.0% |
| TCAACTTGTCAGTCTTCCAT+TGG | + | chr4_3:44802585-44802604 | None:intergenic | 40.0% | |
| GTCCTTCAAATTGTAAGGGT+CGG | + | chr4_3:44802751-44802770 | None:intergenic | 40.0% | |
| ATCTGCATCAAACACGAGTT+AGG | + | chr4_3:44802808-44802827 | None:intergenic | 40.0% | |
| ! | GCGCGCTCTTTTGAATTTTA+AGG | + | chr4_3:44802925-44802944 | None:intergenic | 40.0% |
| TTGGATCACTTCAAGCATTC+AGG | - | chr4_3:44803037-44803056 | Msa0642760:intron | 40.0% | |
| TGGATCACTTCAAGCATTCA+GGG | - | chr4_3:44803038-44803057 | Msa0642760:intron | 40.0% | |
| ATCTCTTTAACCATGGAGAG+AGG | + | chr4_3:44803151-44803170 | None:intergenic | 40.0% | |
| !!! | TTTTCATGTTCTAGTGGGCT+TGG | - | chr4_3:44803174-44803193 | Msa0642760:intron | 40.0% |
| ! | TTCACTGATTGATCCGTCAA+AGG | - | chr4_3:44803261-44803280 | Msa0642760:intron | 40.0% |
| GATTTCCTTGGATCCTTTGA+CGG | + | chr4_3:44803277-44803296 | None:intergenic | 40.0% | |
| TCAAAGGATCCAAGGAAATC+AGG | - | chr4_3:44803277-44803296 | Msa0642760:intron | 40.0% | |
| ! | TTGGTGTTTGGAAGGATAAG+TGG | + | chr4_3:44803307-44803326 | None:intergenic | 40.0% |
| GAACCAGGAGAAGAAAATGA+AGG | - | chr4_3:44803393-44803412 | Msa0642760:intron | 40.0% | |
| ! | TTCCCTTCATTTTCTTCTCC+TGG | + | chr4_3:44803399-44803418 | None:intergenic | 40.0% |
| GGAGAAGAAAATGAAGGGAA+AGG | - | chr4_3:44803399-44803418 | Msa0642760:intron | 40.0% | |
| AAATGAAGGGAAAGGGTAAG+AGG | - | chr4_3:44803407-44803426 | Msa0642760:intron | 40.0% | |
| AATGAAGGGAAAGGGTAAGA+GGG | - | chr4_3:44803408-44803427 | Msa0642760:intron | 40.0% | |
| TGATTGTAAAGAACCTGAGC+AGG | - | chr4_3:44803477-44803496 | Msa0642760:intron | 40.0% | |
| ATCAACACAGACCACTGAAA+AGG | - | chr4_3:44803573-44803592 | Msa0642760:CDS | 40.0% | |
| TTCTTATGACCATCGTTTCC+TGG | + | chr4_3:44803607-44803626 | None:intergenic | 40.0% | |
| TGTTGATCTTAAGTGCAAGC+TGG | - | chr4_3:44803663-44803682 | Msa0642760:CDS | 40.0% | |
| !! | AAGTGCAAGCTGGTTGATTT+TGG | - | chr4_3:44803673-44803692 | Msa0642760:CDS | 40.0% |
| TTAGAACCAAGAAGAACCTC+AGG | + | chr4_3:44803760-44803779 | None:intergenic | 40.0% | |
| ! | GTTCTTTTTGATCCTCACAG+TGG | - | chr4_3:44803844-44803863 | Msa0642760:five_prime_UTR | 40.0% |
| ACAGTGGTGACAACTATGAT+AGG | - | chr4_3:44803860-44803879 | Msa0642760:five_prime_UTR | 40.0% | |
| CAGTGGTGACAACTATGATA+GGG | - | chr4_3:44803861-44803880 | Msa0642760:five_prime_UTR | 40.0% | |
| TGACAACTATGATAGGGATG+AGG | - | chr4_3:44803867-44803886 | Msa0642760:five_prime_UTR | 40.0% | |
| !!! | AGGGTTTTGATAGTGTTGCC+GGG | + | chr4_3:44801155-44801174 | None:intergenic | 45.0% |
| CATCACCAAGTTTCACAGCA+TGG | + | chr4_3:44801361-44801380 | None:intergenic | 45.0% | |
| TTGGGATACTCTCAAATCGG+TGG | - | chr4_3:44801451-44801470 | Msa0642760:CDS | 45.0% | |
| TGGGATACTCTCAAATCGGT+GGG | - | chr4_3:44801452-44801471 | Msa0642760:CDS | 45.0% | |
| TGGGTACTAGTGGTGTATTC+AGG | - | chr4_3:44801647-44801666 | Msa0642760:CDS | 45.0% | |
| TAGATTCTTCCATGCTCACG+AGG | - | chr4_3:44801817-44801836 | Msa0642760:CDS | 45.0% | |
| AACAAGGTTTGAATCTCGGC+TGG | - | chr4_3:44801843-44801862 | Msa0642760:CDS | 45.0% | |
| ACAAGGTTTGAATCTCGGCT+GGG | - | chr4_3:44801844-44801863 | Msa0642760:CDS | 45.0% | |
| TTTGGGAAGAGGGTTTAGGA+GGG | + | chr4_3:44802298-44802317 | None:intergenic | 45.0% | |
| TGTGTTTGGGAAGAGGGTTT+AGG | + | chr4_3:44802302-44802321 | None:intergenic | 45.0% | |
| GACCGACCCTTACAATTTGA+AGG | - | chr4_3:44802746-44802765 | Msa0642760:intron | 45.0% | |
| ACACTACACTGAAGCTGCAA+TGG | - | chr4_3:44802946-44802965 | Msa0642760:intron | 45.0% | |
| TTCAAGCATTCAGGGCCTAA+TGG | - | chr4_3:44803046-44803065 | Msa0642760:intron | 45.0% | |
| ATACACACATGCACGCCATT+AGG | + | chr4_3:44803064-44803083 | None:intergenic | 45.0% | |
| TAATGGCGTGCATGTGTGTA+TGG | - | chr4_3:44803063-44803082 | Msa0642760:intron | 45.0% | |
| GGGTGAGAAGATTATCACCA+AGG | + | chr4_3:44803099-44803118 | None:intergenic | 45.0% | |
| TTGATCCGTCAAAGGATCCA+AGG | - | chr4_3:44803269-44803288 | Msa0642760:intron | 45.0% | |
| ! | TTCTTCTCCTGGTTCTTCGT+CGG | + | chr4_3:44803388-44803407 | None:intergenic | 45.0% |
| TGTTGAGAAGGAAAGTCCAG+AGG | - | chr4_3:44803444-44803463 | Msa0642760:intron | 45.0% | |
| AAGGAAAGTCCAGAGGAATC+TGG | - | chr4_3:44803451-44803470 | Msa0642760:intron | 45.0% | |
| AGGAAAGTCCAGAGGAATCT+GGG | - | chr4_3:44803452-44803471 | Msa0642760:intron | 45.0% | |
| GCAGCTTCTTTCTCATGGAA+CGG | + | chr4_3:44803636-44803655 | None:intergenic | 45.0% | |
| TTCCATGAGAAAGAAGCTGC+TGG | - | chr4_3:44803636-44803655 | Msa0642760:CDS | 45.0% | |
| AAGGCAATATAGGTGTCCTG+AGG | - | chr4_3:44803741-44803760 | Msa0642760:exon | 45.0% | |
| ACTCAACTCCAGCAGATATG+TGG | - | chr4_3:44803782-44803801 | Msa0642760:five_prime_UTR | 45.0% | |
| CTCAAAGCAGATGCAAGCAA+AGG | + | chr4_3:44803809-44803828 | None:intergenic | 45.0% | |
| TCATAGTTGTCACCACTGTG+AGG | + | chr4_3:44803859-44803878 | None:intergenic | 45.0% | |
| !!! | ATATTTTTTTTTTTTTGAAA+TGG | + | chr4_3:44802447-44802466 | None:intergenic | 5.0% |
| ACTGAACACTATAGGCGTGG+TGG | - | chr4_3:44801332-44801351 | Msa0642760:CDS | 50.0% | |
| CTGAACACTATAGGCGTGGT+GGG | - | chr4_3:44801333-44801352 | Msa0642760:CDS | 50.0% | |
| GGGTACCATGCTGTGAAACT+TGG | - | chr4_3:44801353-44801372 | Msa0642760:CDS | 50.0% | |
| !! | CAATGTGGGTTGGGTACTAG+TGG | - | chr4_3:44801637-44801656 | Msa0642760:CDS | 50.0% |
| ATGCACACTTGGGGTGTGTT+TGG | - | chr4_3:44802071-44802090 | Msa0642760:CDS | 50.0% | |
| TGCACACTTGGGGTGTGTTT+GGG | - | chr4_3:44802072-44802091 | Msa0642760:CDS | 50.0% | |
| TGTGTTTGGGAGGAGGGTTT+AGG | - | chr4_3:44802085-44802104 | Msa0642760:CDS | 50.0% | |
| TTTGGGAGGAGGGTTTAGGA+GGG | - | chr4_3:44802089-44802108 | Msa0642760:CDS | 50.0% | |
| AAGAGGGTTTAGGAGGGGAA+GGG | + | chr4_3:44802292-44802311 | None:intergenic | 50.0% | |
| TTGGGAAGAGGGTTTAGGAG+GGG | + | chr4_3:44802297-44802316 | None:intergenic | 50.0% | |
| GTTTGGGAAGAGGGTTTAGG+AGG | + | chr4_3:44802299-44802318 | None:intergenic | 50.0% | |
| ! | CAAGGGTGTGTTTGGGAAGA+GGG | + | chr4_3:44802308-44802327 | None:intergenic | 50.0% |
| ! | TCAAGGGTGTGTTTGGGAAG+AGG | + | chr4_3:44802309-44802328 | None:intergenic | 50.0% |
| CAAGGCGCACTAATAAGCTC+GGG | + | chr4_3:44802397-44802416 | None:intergenic | 50.0% | |
| GCAAGGCGCACTAATAAGCT+CGG | + | chr4_3:44802398-44802417 | None:intergenic | 50.0% | |
| GCTTATTAGTGCGCCTTGCA+CGG | - | chr4_3:44802399-44802418 | Msa0642760:intron | 50.0% | |
| CTTATTAGTGCGCCTTGCAC+GGG | - | chr4_3:44802400-44802419 | Msa0642760:intron | 50.0% | |
| TTAACCAACAAGCCCGTGCA+AGG | + | chr4_3:44802415-44802434 | None:intergenic | 50.0% | |
| ! | AGTGGAGCACCTGATTTCCT+TGG | + | chr4_3:44803289-44803308 | None:intergenic | 50.0% |
| GGAAAGTCCAGAGGAATCTG+GGG | - | chr4_3:44803453-44803472 | Msa0642760:intron | 50.0% | |
| CAATCATCCCCAGATTCCTC+TGG | + | chr4_3:44803463-44803482 | None:intergenic | 50.0% | |
| ! | TGGTGCAAGGTCCTTTTCAG+TGG | + | chr4_3:44803587-44803606 | None:intergenic | 50.0% |
| ACTGAAAAGGACCTTGCACC+AGG | - | chr4_3:44803586-44803605 | Msa0642760:CDS | 50.0% | |
| TGCCAGCAGCTTCTTTCTCA+TGG | + | chr4_3:44803641-44803660 | None:intergenic | 50.0% | |
| AGGTGTCCTGAGGTTCTTCT+TGG | - | chr4_3:44803751-44803770 | Msa0642760:exon | 50.0% | |
| GCAAAGGACCACATATCTGC+TGG | + | chr4_3:44803793-44803812 | None:intergenic | 50.0% | |
| ! | ATCTGCTTTGAGCTTGCCAC+TGG | - | chr4_3:44803817-44803836 | Msa0642760:five_prime_UTR | 50.0% |
| ! | GGCACTGAACACTATAGGCG+TGG | - | chr4_3:44801329-44801348 | Msa0642760:CDS | 55.0% |
| CTTGTTTCGCCTCGTGAGCA+TGG | + | chr4_3:44801829-44801848 | None:intergenic | 55.0% | |
| CATGCTCACGAGGCGAAACA+AGG | - | chr4_3:44801827-44801846 | Msa0642760:CDS | 55.0% | |
| ACACTTGGGGTGTGTTTGGG+AGG | - | chr4_3:44802075-44802094 | Msa0642760:CDS | 55.0% | |
| TTGGGGTGTGTTTGGGAGGA+GGG | - | chr4_3:44802079-44802098 | Msa0642760:CDS | 55.0% | |
| GTTTGGGAGGAGGGTTTAGG+AGG | - | chr4_3:44802088-44802107 | Msa0642760:CDS | 55.0% | |
| TTGGGAGGAGGGTTTAGGAG+GGG | - | chr4_3:44802090-44802109 | Msa0642760:CDS | 55.0% | |
| AGGAGGGTTTAGGAGGGGAA+GGG | - | chr4_3:44802095-44802114 | Msa0642760:CDS | 55.0% | |
| GAAGAGGGTTTAGGAGGGGA+AGG | + | chr4_3:44802293-44802312 | None:intergenic | 55.0% | |
| GCGCACTAATAAGCTCGGGT+GGG | + | chr4_3:44802393-44802412 | None:intergenic | 55.0% | |
| TCGTGGAGTTCCTCTCTCCA+TGG | - | chr4_3:44803138-44803157 | Msa0642760:intron | 55.0% | |
| TGGAGATCCGACGAAGAACC+AGG | - | chr4_3:44803378-44803397 | Msa0642760:intron | 55.0% | |
| GAAGGGAAAGGGTAAGAGGG+TGG | - | chr4_3:44803411-44803430 | Msa0642760:intron | 55.0% | |
| AAGGGTAAGAGGGTGGCTCA+AGG | - | chr4_3:44803418-44803437 | Msa0642760:intron | 55.0% | |
| GGCTCAAGGCTGTGTTGAGA+AGG | - | chr4_3:44803432-44803451 | Msa0642760:intron | 55.0% | |
| GACCTTGCACCAGGAAACGA+TGG | - | chr4_3:44803595-44803614 | Msa0642760:CDS | 55.0% | |
| GACCATCGTTTCCTGGTGCA+AGG | + | chr4_3:44803600-44803619 | None:intergenic | 55.0% | |
| CTTGGGGTGTGTTTGGGAGG+AGG | - | chr4_3:44802078-44802097 | Msa0642760:CDS | 60.0% | |
| GAGGAGGGTTTAGGAGGGGA+AGG | - | chr4_3:44802094-44802113 | Msa0642760:CDS | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | - | chr4_3:44802098-44802117 | Msa0642760:CDS | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | - | chr4_3:44802099-44802118 | Msa0642760:CDS | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | - | chr4_3:44802100-44802119 | Msa0642760:CDS | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | + | chr4_3:44802100-44802119 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | + | chr4_3:44802099-44802118 | None:intergenic | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | + | chr4_3:44802098-44802117 | None:intergenic | 60.0% | |
| GGCGCACTAATAAGCTCGGG+TGG | + | chr4_3:44802394-44802413 | None:intergenic | 60.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | - | chr4_3:44802103-44802122 | Msa0642760:CDS | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | - | chr4_3:44802104-44802123 | Msa0642760:CDS | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | + | chr4_3:44802104-44802123 | None:intergenic | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | + | chr4_3:44802103-44802122 | None:intergenic | 65.0% | |
| TGCGCCTTGCACGGGCTTGT+TGG | - | chr4_3:44802408-44802427 | Msa0642760:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 44801126 | 44803912 | 44801126 | ID=Msa0642760;Name=Msa0642760 |
| chr4_3 | mRNA | 44801126 | 44803912 | 44801126 | ID=Msa0642760-mRNA-1;Parent=Msa0642760;Name=Msa0642760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=158|1|0.5|1|1|1|2|0|395 |
| chr4_3 | exon | 44801126 | 44802127 | 44801126 | ID=Msa0642760-mRNA-1:exon:10311;Parent=Msa0642760-mRNA-1 |
| chr4_3 | exon | 44803569 | 44803912 | 44803569 | ID=Msa0642760-mRNA-1:exon:10310;Parent=Msa0642760-mRNA-1 |
| chr4_3 | five_prime_UTR | 44803755 | 44803912 | 44803755 | ID=Msa0642760-mRNA-1:five_prime_utr;Parent=Msa0642760-mRNA-1 |
| chr4_3 | CDS | 44803569 | 44803754 | 44803569 | ID=Msa0642760-mRNA-1:cds;Parent=Msa0642760-mRNA-1 |
| chr4_3 | CDS | 44801126 | 44802127 | 44801126 | ID=Msa0642760-mRNA-1:cds;Parent=Msa0642760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
