Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643160 | XP_024638100.1 | 96.703 | 182 | 6 | 0 | 1 | 182 | 1 | 182 | 2.16e-120 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643160 | sp|Q8L7S3|C3H24_ARATH | 50.000 | 150 | 56 | 5 | 47 | 183 | 53 | 196 | 1.81e-37 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643160 | A0A396I558 | 96.703 | 182 | 6 | 0 | 1 | 182 | 1 | 182 | 1.03e-120 | 369 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0643160 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643160 | MtrunA17_Chr4g0029231 | 96.703 | 182 | 6 | 0 | 1 | 182 | 1 | 182 | 1.98e-124 | 369 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643160 | AT2G28450.2 | 50.000 | 150 | 56 | 5 | 47 | 183 | 53 | 196 | 1.57e-38 | 140 |
| Msa0643160 | AT2G28450.1 | 50.000 | 150 | 56 | 5 | 47 | 183 | 53 | 196 | 1.84e-38 | 140 |
Find 53 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTGATTGGTTCGTTGATT+TGG | 0.168596 | 4_3:+45661357 | None:intergenic |
| GTTGATTGGTTCGTTGATTT+GGG | 0.206430 | 4_3:+45661358 | None:intergenic |
| GTCGTCTCTCTTCCGTTTCT+CGG | 0.304418 | 4_3:+45661322 | None:intergenic |
| GTTGTTACGACGTCGTTGAT+TGG | 0.365477 | 4_3:+45661344 | None:intergenic |
| TTCTCTGAAGTCCATTTCAT+AGG | 0.411905 | 4_3:+45660966 | None:intergenic |
| ACACACACTGAAGTTAATAA+TGG | 0.444840 | 4_3:-45661477 | Msa0643160:exon |
| AATGGACTTCAGAGAATTTG+AGG | 0.449487 | 4_3:-45660959 | Msa0643160:CDS |
| GTCGGGTCCCACGTGTTATC+CGG | 0.453087 | 4_3:+45661152 | None:intergenic |
| TAGTGCATTTGCCTATGAAA+TGG | 0.462687 | 4_3:-45660977 | Msa0643160:CDS |
| TTCTTCCCTCTCTCAGACGT+CGG | 0.466288 | 4_3:+45661134 | None:intergenic |
| TGGAGGCGTTGGATGAGGTT+CGG | 0.466871 | 4_3:+45661388 | None:intergenic |
| ACGTGTTATCCGGACGTATC+CGG | 0.467586 | 4_3:+45661162 | None:intergenic |
| GAAGTTGTTGAAATCTGTTA+CGG | 0.471585 | 4_3:-45661114 | Msa0643160:CDS |
| AAGTTGTTGAAATCTGTTAC+GGG | 0.489764 | 4_3:-45661113 | Msa0643160:CDS |
| AGAGACTCGTCTTCCACATC+GGG | 0.502001 | 4_3:+45661258 | None:intergenic |
| TCTGCTTTCGACTGCTAAAG+TGG | 0.504561 | 4_3:+45661524 | None:intergenic |
| TTCGCTATGCGCGTAACGGC+AGG | 0.506908 | 4_3:+45661193 | None:intergenic |
| ACGTCGTAACAACCGAGAAA+CGG | 0.510294 | 4_3:-45661334 | Msa0643160:CDS |
| GGTGACGGTGGCGGAGAAGA+AGG | 0.512635 | 4_3:-45661032 | Msa0643160:CDS |
| TCTTCCCTCTCTCAGACGTC+GGG | 0.514602 | 4_3:+45661135 | None:intergenic |
| CGTTGGATGAGGTTCGGAAG+TGG | 0.521541 | 4_3:+45661394 | None:intergenic |
| GCAGGTATCACCGTGACTGC+AGG | 0.537939 | 4_3:+45661211 | None:intergenic |
| CGGAAGAGAGACGACGGCGA+CGG | 0.540517 | 4_3:-45661314 | Msa0643160:CDS |
| GAGAAAATTGCTGTTAAAGA+TGG | 0.546724 | 4_3:-45661089 | Msa0643160:CDS |
| TTCCACATCGGGTGAAGAGA+AGG | 0.546892 | 4_3:+45661269 | None:intergenic |
| AGAAGAGCTCCGGATACGTC+CGG | 0.547613 | 4_3:-45661171 | Msa0643160:CDS |
| AGAAGGTTTGTCATCTTCGT+CGG | 0.548388 | 4_3:+45661286 | None:intergenic |
| AACCTTCTCTTCACCCGATG+TGG | 0.550704 | 4_3:-45661271 | Msa0643160:CDS |
| AGAGGGAGATAGTTCAGAAG+TGG | 0.556437 | 4_3:+45661451 | None:intergenic |
| CGCATAGCGAAGAAGAGCTC+CGG | 0.559973 | 4_3:-45661181 | Msa0643160:CDS |
| TTGATTGGTTCGTTGATTTG+GGG | 0.574703 | 4_3:+45661359 | None:intergenic |
| AACAATCAATAATCAGAGCA+AGG | 0.574847 | 4_3:-45661502 | Msa0643160:five_prime_UTR |
| TTCGACTGCTAAAGTGGTAA+CGG | 0.576315 | 4_3:+45661530 | None:intergenic |
| AAACATTCCACCTGCAGTCA+CGG | 0.582252 | 4_3:-45661221 | Msa0643160:CDS |
| TGATTGGTTCGTTGATTTGG+GGG | 0.584698 | 4_3:+45661360 | None:intergenic |
| CTTCTTCGCTATGCGCGTAA+CGG | 0.584705 | 4_3:+45661189 | None:intergenic |
| GAAGTTGACGGTGACGGTGG+CGG | 0.595564 | 4_3:-45661041 | Msa0643160:CDS |
| CAGAGACTCGTCTTCCACAT+CGG | 0.597869 | 4_3:+45661257 | None:intergenic |
| TGGGACCCGACGTCTGAGAG+AGG | 0.603821 | 4_3:-45661140 | Msa0643160:CDS |
| GAGCTTGTTGATGAAGTTGA+CGG | 0.604525 | 4_3:-45661053 | Msa0643160:CDS |
| GATTGGTTCGTTGATTTGGG+GGG | 0.605137 | 4_3:+45661361 | None:intergenic |
| TGCTAAAGTGGTAACGGTGA+TGG | 0.609034 | 4_3:+45661536 | None:intergenic |
| GGTATCACCGTGACTGCAGG+TGG | 0.612586 | 4_3:+45661214 | None:intergenic |
| GGGACCCGACGTCTGAGAGA+GGG | 0.619596 | 4_3:-45661139 | Msa0643160:CDS |
| GTTGATGAAGTTGACGGTGA+CGG | 0.636434 | 4_3:-45661047 | Msa0643160:CDS |
| GGATACGTCCGGATAACACG+TGG | 0.646659 | 4_3:-45661160 | Msa0643160:CDS |
| GAGAAACGGAAGAGAGACGA+CGG | 0.657023 | 4_3:-45661320 | Msa0643160:CDS |
| CACACTGAAGTTAATAATGG+CGG | 0.663238 | 4_3:-45661474 | Msa0643160:exon |
| TTTAATAGGCTAATCACATG+CGG | 0.665780 | 4_3:-45661626 | Msa0643160:five_prime_UTR |
| GTGGTAACGGTGATGGTGAG+TGG | 0.671605 | 4_3:+45661543 | None:intergenic |
| TAAAGATGGTGTAATGATGA+CGG | 0.681574 | 4_3:-45661075 | Msa0643160:CDS |
| GATGAAGTTGACGGTGACGG+TGG | 0.693756 | 4_3:-45661044 | Msa0643160:CDS |
| GATACGTCCGGATAACACGT+GGG | 0.719278 | 4_3:-45661159 | Msa0643160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCAATTTTAAAAAATTTAAT+AGG | - | chr4_3:45660665-45660684 | Msa0643160:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTGA+GGG | + | chr4_3:45660737-45660756 | None:intergenic | 10.0% |
| !!! | TGTTTTTTTTTTTTTTTTTG+AGG | + | chr4_3:45660738-45660757 | None:intergenic | 10.0% |
| !!! | GCAATTTTAAAAAATTTAAT+AGG | - | chr4_3:45660665-45660684 | Msa0643160:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTGA+GGG | + | chr4_3:45660737-45660756 | None:intergenic | 10.0% |
| !!! | TGTTTTTTTTTTTTTTTTTG+AGG | + | chr4_3:45660738-45660757 | None:intergenic | 10.0% |
| !! | ATGTTTGATAAGTAATAGTT+GGG | - | chr4_3:45661460-45661479 | Msa0643160:CDS | 20.0% |
| !! | TTCTATCATAAACCATATTT+CGG | + | chr4_3:45661502-45661521 | None:intergenic | 20.0% |
| !! | ATGTTTGATAAGTAATAGTT+GGG | - | chr4_3:45661460-45661479 | Msa0643160:CDS | 20.0% |
| !! | TTCTATCATAAACCATATTT+CGG | + | chr4_3:45661502-45661521 | None:intergenic | 20.0% |
| !!! | GTTGTTTCTAAGATTTTAGA+GGG | + | chr4_3:45660874-45660893 | None:intergenic | 25.0% |
| !!! | TGTTGTTTCTAAGATTTTAG+AGG | + | chr4_3:45660875-45660894 | None:intergenic | 25.0% |
| ! | AAATTGAAAAATCCGAAACT+CGG | + | chr4_3:45661402-45661421 | None:intergenic | 25.0% |
| ! | CATGTTTGATAAGTAATAGT+TGG | - | chr4_3:45661459-45661478 | Msa0643160:CDS | 25.0% |
| ! | ATATGGTTTATGATAGAACA+TGG | - | chr4_3:45661504-45661523 | Msa0643160:five_prime_UTR | 25.0% |
| !!! | CAAAGATTTTCATTTTTTGG+TGG | + | chr4_3:45661631-45661650 | None:intergenic | 25.0% |
| ! | CACCAAAAAATGAAAATCTT+TGG | - | chr4_3:45661629-45661648 | Msa0643160:five_prime_UTR | 25.0% |
| !!! | AGCCAAAGATTTTCATTTTT+TGG | + | chr4_3:45661634-45661653 | None:intergenic | 25.0% |
| !!! | GTTGTTTCTAAGATTTTAGA+GGG | + | chr4_3:45660874-45660893 | None:intergenic | 25.0% |
| !!! | TGTTGTTTCTAAGATTTTAG+AGG | + | chr4_3:45660875-45660894 | None:intergenic | 25.0% |
| ! | AAATTGAAAAATCCGAAACT+CGG | + | chr4_3:45661402-45661421 | None:intergenic | 25.0% |
| ! | CATGTTTGATAAGTAATAGT+TGG | - | chr4_3:45661459-45661478 | Msa0643160:CDS | 25.0% |
| ! | ATATGGTTTATGATAGAACA+TGG | - | chr4_3:45661504-45661523 | Msa0643160:five_prime_UTR | 25.0% |
| !!! | CAAAGATTTTCATTTTTTGG+TGG | + | chr4_3:45661631-45661650 | None:intergenic | 25.0% |
| ! | CACCAAAAAATGAAAATCTT+TGG | - | chr4_3:45661629-45661648 | Msa0643160:five_prime_UTR | 25.0% |
| !!! | AGCCAAAGATTTTCATTTTT+TGG | + | chr4_3:45661634-45661653 | None:intergenic | 25.0% |
| TTTAATAGGCTAATCACATG+CGG | - | chr4_3:45660679-45660698 | Msa0643160:intron | 30.0% | |
| AACAATCAATAATCAGAGCA+AGG | - | chr4_3:45660803-45660822 | Msa0643160:intron | 30.0% | |
| ACACACACTGAAGTTAATAA+TGG | - | chr4_3:45660828-45660847 | Msa0643160:intron | 30.0% | |
| GAAGTTGTTGAAATCTGTTA+CGG | - | chr4_3:45661191-45661210 | Msa0643160:CDS | 30.0% | |
| AAGTTGTTGAAATCTGTTAC+GGG | - | chr4_3:45661192-45661211 | Msa0643160:CDS | 30.0% | |
| ! | GAGAAAATTGCTGTTAAAGA+TGG | - | chr4_3:45661216-45661235 | Msa0643160:CDS | 30.0% |
| TAAAGATGGTGTAATGATGA+CGG | - | chr4_3:45661230-45661249 | Msa0643160:CDS | 30.0% | |
| TTTAATAGGCTAATCACATG+CGG | - | chr4_3:45660679-45660698 | Msa0643160:intron | 30.0% | |
| AACAATCAATAATCAGAGCA+AGG | - | chr4_3:45660803-45660822 | Msa0643160:intron | 30.0% | |
| ACACACACTGAAGTTAATAA+TGG | - | chr4_3:45660828-45660847 | Msa0643160:intron | 30.0% | |
| GAAGTTGTTGAAATCTGTTA+CGG | - | chr4_3:45661191-45661210 | Msa0643160:CDS | 30.0% | |
| AAGTTGTTGAAATCTGTTAC+GGG | - | chr4_3:45661192-45661211 | Msa0643160:CDS | 30.0% | |
| ! | GAGAAAATTGCTGTTAAAGA+TGG | - | chr4_3:45661216-45661235 | Msa0643160:CDS | 30.0% |
| TAAAGATGGTGTAATGATGA+CGG | - | chr4_3:45661230-45661249 | Msa0643160:CDS | 30.0% | |
| !!! | TTTTTTTTTGAGGGAGTGAG+TGG | + | chr4_3:45660728-45660747 | None:intergenic | 35.0% |
| CACACTGAAGTTAATAATGG+CGG | - | chr4_3:45660831-45660850 | Msa0643160:intron | 35.0% | |
| !! | TTGATTGGTTCGTTGATTTG+GGG | + | chr4_3:45660949-45660968 | None:intergenic | 35.0% |
| !! | GTTGATTGGTTCGTTGATTT+GGG | + | chr4_3:45660950-45660969 | None:intergenic | 35.0% |
| TAGTGCATTTGCCTATGAAA+TGG | - | chr4_3:45661328-45661347 | Msa0643160:CDS | 35.0% | |
| !! | TTCTCTGAAGTCCATTTCAT+AGG | + | chr4_3:45661342-45661361 | None:intergenic | 35.0% |
| ! | AATGGACTTCAGAGAATTTG+AGG | - | chr4_3:45661346-45661365 | Msa0643160:CDS | 35.0% |
| !!! | TTTTTTTTTGAGGGAGTGAG+TGG | + | chr4_3:45660728-45660747 | None:intergenic | 35.0% |
| CACACTGAAGTTAATAATGG+CGG | - | chr4_3:45660831-45660850 | Msa0643160:intron | 35.0% | |
| !! | TTGATTGGTTCGTTGATTTG+GGG | + | chr4_3:45660949-45660968 | None:intergenic | 35.0% |
| !! | GTTGATTGGTTCGTTGATTT+GGG | + | chr4_3:45660950-45660969 | None:intergenic | 35.0% |
| TAGTGCATTTGCCTATGAAA+TGG | - | chr4_3:45661328-45661347 | Msa0643160:CDS | 35.0% | |
| !! | TTCTCTGAAGTCCATTTCAT+AGG | + | chr4_3:45661342-45661361 | None:intergenic | 35.0% |
| ! | AATGGACTTCAGAGAATTTG+AGG | - | chr4_3:45661346-45661365 | Msa0643160:CDS | 35.0% |
| TTCGACTGCTAAAGTGGTAA+CGG | + | chr4_3:45660778-45660797 | None:intergenic | 40.0% | |
| !! | TGATTGGTTCGTTGATTTGG+GGG | + | chr4_3:45660948-45660967 | None:intergenic | 40.0% |
| !! | CGTTGATTGGTTCGTTGATT+TGG | + | chr4_3:45660951-45660970 | None:intergenic | 40.0% |
| AGAAGGTTTGTCATCTTCGT+CGG | + | chr4_3:45661022-45661041 | None:intergenic | 40.0% | |
| !! | GAGCTTGTTGATGAAGTTGA+CGG | - | chr4_3:45661252-45661271 | Msa0643160:CDS | 40.0% |
| GTAAGCATGTTTCCGAGTTT+CGG | - | chr4_3:45661387-45661406 | Msa0643160:CDS | 40.0% | |
| ! | CAACGAGTTGAACCGAAATA+TGG | - | chr4_3:45661487-45661506 | Msa0643160:five_prime_UTR | 40.0% |
| !! | AAGCTTTTTCCCTCTAAGTG+GGG | + | chr4_3:45661552-45661571 | None:intergenic | 40.0% |
| !! | CAAGCTTTTTCCCTCTAAGT+GGG | + | chr4_3:45661553-45661572 | None:intergenic | 40.0% |
| TTCGACTGCTAAAGTGGTAA+CGG | + | chr4_3:45660778-45660797 | None:intergenic | 40.0% | |
| !! | TGATTGGTTCGTTGATTTGG+GGG | + | chr4_3:45660948-45660967 | None:intergenic | 40.0% |
| !! | CGTTGATTGGTTCGTTGATT+TGG | + | chr4_3:45660951-45660970 | None:intergenic | 40.0% |
| AGAAGGTTTGTCATCTTCGT+CGG | + | chr4_3:45661022-45661041 | None:intergenic | 40.0% | |
| !! | GAGCTTGTTGATGAAGTTGA+CGG | - | chr4_3:45661252-45661271 | Msa0643160:CDS | 40.0% |
| GTAAGCATGTTTCCGAGTTT+CGG | - | chr4_3:45661387-45661406 | Msa0643160:CDS | 40.0% | |
| ! | CAACGAGTTGAACCGAAATA+TGG | - | chr4_3:45661487-45661506 | Msa0643160:five_prime_UTR | 40.0% |
| !! | AAGCTTTTTCCCTCTAAGTG+GGG | + | chr4_3:45661552-45661571 | None:intergenic | 40.0% |
| !! | CAAGCTTTTTCCCTCTAAGT+GGG | + | chr4_3:45661553-45661572 | None:intergenic | 40.0% |
| !! | TGCTAAAGTGGTAACGGTGA+TGG | + | chr4_3:45660772-45660791 | None:intergenic | 45.0% |
| TCTGCTTTCGACTGCTAAAG+TGG | + | chr4_3:45660784-45660803 | None:intergenic | 45.0% | |
| AGAGGGAGATAGTTCAGAAG+TGG | + | chr4_3:45660857-45660876 | None:intergenic | 45.0% | |
| !!! | TTGATTTGGGGGGATTTTGG+AGG | + | chr4_3:45660937-45660956 | None:intergenic | 45.0% |
| !!! | TCGTTGATTTGGGGGGATTT+TGG | + | chr4_3:45660940-45660959 | None:intergenic | 45.0% |
| !! | GATTGGTTCGTTGATTTGGG+GGG | + | chr4_3:45660947-45660966 | None:intergenic | 45.0% |
| GTTGTTACGACGTCGTTGAT+TGG | + | chr4_3:45660964-45660983 | None:intergenic | 45.0% | |
| ACGTCGTAACAACCGAGAAA+CGG | - | chr4_3:45660971-45660990 | Msa0643160:CDS | 45.0% | |
| AAACATTCCACCTGCAGTCA+CGG | - | chr4_3:45661084-45661103 | Msa0643160:CDS | 45.0% | |
| ! | GTTGATGAAGTTGACGGTGA+CGG | - | chr4_3:45661258-45661277 | Msa0643160:CDS | 45.0% |
| ATGTAGCAACCCCACTTAGA+GGG | - | chr4_3:45661540-45661559 | Msa0643160:five_prime_UTR | 45.0% | |
| !! | CCAAGCTTTTTCCCTCTAAG+TGG | + | chr4_3:45661554-45661573 | None:intergenic | 45.0% |
| CCACTTAGAGGGAAAAAGCT+TGG | - | chr4_3:45661551-45661570 | Msa0643160:intron | 45.0% | |
| !! | TGCTAAAGTGGTAACGGTGA+TGG | + | chr4_3:45660772-45660791 | None:intergenic | 45.0% |
| TCTGCTTTCGACTGCTAAAG+TGG | + | chr4_3:45660784-45660803 | None:intergenic | 45.0% | |
| AGAGGGAGATAGTTCAGAAG+TGG | + | chr4_3:45660857-45660876 | None:intergenic | 45.0% | |
| !!! | TTGATTTGGGGGGATTTTGG+AGG | + | chr4_3:45660937-45660956 | None:intergenic | 45.0% |
| !!! | TCGTTGATTTGGGGGGATTT+TGG | + | chr4_3:45660940-45660959 | None:intergenic | 45.0% |
| !! | GATTGGTTCGTTGATTTGGG+GGG | + | chr4_3:45660947-45660966 | None:intergenic | 45.0% |
| GTTGTTACGACGTCGTTGAT+TGG | + | chr4_3:45660964-45660983 | None:intergenic | 45.0% | |
| ACGTCGTAACAACCGAGAAA+CGG | - | chr4_3:45660971-45660990 | Msa0643160:CDS | 45.0% | |
| AAACATTCCACCTGCAGTCA+CGG | - | chr4_3:45661084-45661103 | Msa0643160:CDS | 45.0% | |
| ! | GTTGATGAAGTTGACGGTGA+CGG | - | chr4_3:45661258-45661277 | Msa0643160:CDS | 45.0% |
| ATGTAGCAACCCCACTTAGA+GGG | - | chr4_3:45661540-45661559 | Msa0643160:five_prime_UTR | 45.0% | |
| !! | CCAAGCTTTTTCCCTCTAAG+TGG | + | chr4_3:45661554-45661573 | None:intergenic | 45.0% |
| CCACTTAGAGGGAAAAAGCT+TGG | - | chr4_3:45661551-45661570 | Msa0643160:intron | 45.0% | |
| TTGAGGGAGTGAGTGGTAAC+TGG | + | chr4_3:45660721-45660740 | None:intergenic | 50.0% | |
| !!! | GATTTTGGAGGCGTTGGATG+AGG | + | chr4_3:45660925-45660944 | None:intergenic | 50.0% |
| GTCGTCTCTCTTCCGTTTCT+CGG | + | chr4_3:45660986-45661005 | None:intergenic | 50.0% | |
| GAGAAACGGAAGAGAGACGA+CGG | - | chr4_3:45660985-45661004 | Msa0643160:CDS | 50.0% | |
| AACCTTCTCTTCACCCGATG+TGG | - | chr4_3:45661034-45661053 | Msa0643160:CDS | 50.0% | |
| TTCCACATCGGGTGAAGAGA+AGG | + | chr4_3:45661039-45661058 | None:intergenic | 50.0% | |
| AGAGACTCGTCTTCCACATC+GGG | + | chr4_3:45661050-45661069 | None:intergenic | 50.0% | |
| CAGAGACTCGTCTTCCACAT+CGG | + | chr4_3:45661051-45661070 | None:intergenic | 50.0% | |
| CTTCTTCGCTATGCGCGTAA+CGG | + | chr4_3:45661119-45661138 | None:intergenic | 50.0% | |
| ACGTGTTATCCGGACGTATC+CGG | + | chr4_3:45661146-45661165 | None:intergenic | 50.0% | |
| GATACGTCCGGATAACACGT+GGG | - | chr4_3:45661146-45661165 | Msa0643160:CDS | 50.0% | |
| TTCTTCCCTCTCTCAGACGT+CGG | + | chr4_3:45661174-45661193 | None:intergenic | 50.0% | |
| CTCTAAGTGGGGTTGCTACA+TGG | + | chr4_3:45661541-45661560 | None:intergenic | 50.0% | |
| CATGTAGCAACCCCACTTAG+AGG | - | chr4_3:45661539-45661558 | Msa0643160:five_prime_UTR | 50.0% | |
| TTGAGGGAGTGAGTGGTAAC+TGG | + | chr4_3:45660721-45660740 | None:intergenic | 50.0% | |
| !!! | GATTTTGGAGGCGTTGGATG+AGG | + | chr4_3:45660925-45660944 | None:intergenic | 50.0% |
| GTCGTCTCTCTTCCGTTTCT+CGG | + | chr4_3:45660986-45661005 | None:intergenic | 50.0% | |
| GAGAAACGGAAGAGAGACGA+CGG | - | chr4_3:45660985-45661004 | Msa0643160:CDS | 50.0% | |
| AACCTTCTCTTCACCCGATG+TGG | - | chr4_3:45661034-45661053 | Msa0643160:CDS | 50.0% | |
| TTCCACATCGGGTGAAGAGA+AGG | + | chr4_3:45661039-45661058 | None:intergenic | 50.0% | |
| AGAGACTCGTCTTCCACATC+GGG | + | chr4_3:45661050-45661069 | None:intergenic | 50.0% | |
| CAGAGACTCGTCTTCCACAT+CGG | + | chr4_3:45661051-45661070 | None:intergenic | 50.0% | |
| CTTCTTCGCTATGCGCGTAA+CGG | + | chr4_3:45661119-45661138 | None:intergenic | 50.0% | |
| ACGTGTTATCCGGACGTATC+CGG | + | chr4_3:45661146-45661165 | None:intergenic | 50.0% | |
| GATACGTCCGGATAACACGT+GGG | - | chr4_3:45661146-45661165 | Msa0643160:CDS | 50.0% | |
| TTCTTCCCTCTCTCAGACGT+CGG | + | chr4_3:45661174-45661193 | None:intergenic | 50.0% | |
| CTCTAAGTGGGGTTGCTACA+TGG | + | chr4_3:45661541-45661560 | None:intergenic | 50.0% | |
| CATGTAGCAACCCCACTTAG+AGG | - | chr4_3:45661539-45661558 | Msa0643160:five_prime_UTR | 50.0% | |
| !! | GTGGTAACGGTGATGGTGAG+TGG | + | chr4_3:45660765-45660784 | None:intergenic | 55.0% |
| CGTTGGATGAGGTTCGGAAG+TGG | + | chr4_3:45660914-45660933 | None:intergenic | 55.0% | |
| !! | TGGAGGCGTTGGATGAGGTT+CGG | + | chr4_3:45660920-45660939 | None:intergenic | 55.0% |
| CGCATAGCGAAGAAGAGCTC+CGG | - | chr4_3:45661124-45661143 | Msa0643160:CDS | 55.0% | |
| AGAAGAGCTCCGGATACGTC+CGG | - | chr4_3:45661134-45661153 | Msa0643160:CDS | 55.0% | |
| GGATACGTCCGGATAACACG+TGG | - | chr4_3:45661145-45661164 | Msa0643160:CDS | 55.0% | |
| TCTTCCCTCTCTCAGACGTC+GGG | + | chr4_3:45661173-45661192 | None:intergenic | 55.0% | |
| ! | GATGAAGTTGACGGTGACGG+TGG | - | chr4_3:45661261-45661280 | Msa0643160:CDS | 55.0% |
| !! | GTGGTAACGGTGATGGTGAG+TGG | + | chr4_3:45660765-45660784 | None:intergenic | 55.0% |
| CGTTGGATGAGGTTCGGAAG+TGG | + | chr4_3:45660914-45660933 | None:intergenic | 55.0% | |
| !! | TGGAGGCGTTGGATGAGGTT+CGG | + | chr4_3:45660920-45660939 | None:intergenic | 55.0% |
| CGCATAGCGAAGAAGAGCTC+CGG | - | chr4_3:45661124-45661143 | Msa0643160:CDS | 55.0% | |
| AGAAGAGCTCCGGATACGTC+CGG | - | chr4_3:45661134-45661153 | Msa0643160:CDS | 55.0% | |
| GGATACGTCCGGATAACACG+TGG | - | chr4_3:45661145-45661164 | Msa0643160:CDS | 55.0% | |
| TCTTCCCTCTCTCAGACGTC+GGG | + | chr4_3:45661173-45661192 | None:intergenic | 55.0% | |
| ! | GATGAAGTTGACGGTGACGG+TGG | - | chr4_3:45661261-45661280 | Msa0643160:CDS | 55.0% |
| !! | TGGGGGGATTTTGGAGGCGT+TGG | + | chr4_3:45660931-45660950 | None:intergenic | 60.0% |
| GGTATCACCGTGACTGCAGG+TGG | + | chr4_3:45661094-45661113 | None:intergenic | 60.0% | |
| GCAGGTATCACCGTGACTGC+AGG | + | chr4_3:45661097-45661116 | None:intergenic | 60.0% | |
| TTCGCTATGCGCGTAACGGC+AGG | + | chr4_3:45661115-45661134 | None:intergenic | 60.0% | |
| GTCGGGTCCCACGTGTTATC+CGG | + | chr4_3:45661156-45661175 | None:intergenic | 60.0% | |
| ! | GAAGTTGACGGTGACGGTGG+CGG | - | chr4_3:45661264-45661283 | Msa0643160:CDS | 60.0% |
| !! | TGGGGGGATTTTGGAGGCGT+TGG | + | chr4_3:45660931-45660950 | None:intergenic | 60.0% |
| GGTATCACCGTGACTGCAGG+TGG | + | chr4_3:45661094-45661113 | None:intergenic | 60.0% | |
| GCAGGTATCACCGTGACTGC+AGG | + | chr4_3:45661097-45661116 | None:intergenic | 60.0% | |
| TTCGCTATGCGCGTAACGGC+AGG | + | chr4_3:45661115-45661134 | None:intergenic | 60.0% | |
| GTCGGGTCCCACGTGTTATC+CGG | + | chr4_3:45661156-45661175 | None:intergenic | 60.0% | |
| ! | GAAGTTGACGGTGACGGTGG+CGG | - | chr4_3:45661264-45661283 | Msa0643160:CDS | 60.0% |
| CGGAAGAGAGACGACGGCGA+CGG | - | chr4_3:45660991-45661010 | Msa0643160:CDS | 65.0% | |
| TGGGACCCGACGTCTGAGAG+AGG | - | chr4_3:45661165-45661184 | Msa0643160:CDS | 65.0% | |
| GGGACCCGACGTCTGAGAGA+GGG | - | chr4_3:45661166-45661185 | Msa0643160:CDS | 65.0% | |
| !! | GGTGACGGTGGCGGAGAAGA+AGG | - | chr4_3:45661273-45661292 | Msa0643160:CDS | 65.0% |
| CGGAAGAGAGACGACGGCGA+CGG | - | chr4_3:45660991-45661010 | Msa0643160:CDS | 65.0% | |
| TGGGACCCGACGTCTGAGAG+AGG | - | chr4_3:45661165-45661184 | Msa0643160:CDS | 65.0% | |
| GGGACCCGACGTCTGAGAGA+GGG | - | chr4_3:45661166-45661185 | Msa0643160:CDS | 65.0% | |
| !! | GGTGACGGTGGCGGAGAAGA+AGG | - | chr4_3:45661273-45661292 | Msa0643160:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 45660650 | 45661677 | 45660650 | ID=Msa0643160;Name=Msa0643160 |
| chr4_3 | mRNA | 45660650 | 45661677 | 45660650 | ID=Msa0643160-mRNA-1;Parent=Msa0643160;Name=Msa0643160-mRNA-1;_AED=0.43;_eAED=0.43;_QI=160|0.5|0.66|0.66|0.5|0.33|3|0|184 |
| chr4_3 | exon | 45660650 | 45660664 | 45660650 | ID=Msa0643160-mRNA-1:exon:10622;Parent=Msa0643160-mRNA-1 |
| chr4_3 | exon | 45660941 | 45661568 | 45660941 | ID=Msa0643160-mRNA-1:exon:10621;Parent=Msa0643160-mRNA-1 |
| chr4_3 | exon | 45661606 | 45661677 | 45661606 | ID=Msa0643160-mRNA-1:exon:10620;Parent=Msa0643160-mRNA-1 |
| chr4_3 | five_prime_UTR | 45661606 | 45661677 | 45661606 | ID=Msa0643160-mRNA-1:five_prime_utr;Parent=Msa0643160-mRNA-1 |
| chr4_3 | five_prime_UTR | 45661481 | 45661568 | 45661481 | ID=Msa0643160-mRNA-1:five_prime_utr;Parent=Msa0643160-mRNA-1 |
| chr4_3 | CDS | 45660941 | 45661480 | 45660941 | ID=Msa0643160-mRNA-1:cds;Parent=Msa0643160-mRNA-1 |
| chr4_3 | CDS | 45660650 | 45660664 | 45660650 | ID=Msa0643160-mRNA-1:cds;Parent=Msa0643160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
