AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0643500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643500 MtrunA17_Chr4g0029701 98.753 882 11 0 1 882 1 882 0.0 1795
Msa0643500 MtrunA17_Chr2g0326271 70.950 895 237 7 2 882 3 888 0.0 1249
Msa0643500 MtrunA17_Chr8g0356491 34.234 111 68 2 351 461 299 404 6.77e-15 79.3
Msa0643500 MtrunA17_Chr5g0397151 30.556 108 72 1 351 458 302 406 3.62e-14 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643500 AT5G60410.6 62.867 886 312 12 1 882 1 873 0.0 1123
Msa0643500 AT5G60410.1 62.867 886 312 12 1 882 1 873 0.0 1123
Msa0643500 AT5G60410.5 62.867 886 312 12 1 882 1 873 0.0 1122
Msa0643500 AT5G60410.2 62.867 886 312 12 1 882 1 873 0.0 1122
Msa0643500 AT5G60410.4 62.500 872 310 12 1 868 1 859 0.0 1097
Msa0643500 AT5G60410.3 62.069 841 302 12 1 837 1 828 0.0 1050

Find 309 sgRNAs with CRISPR-Local

Find 726 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCAGCTTCTTTGCTTCT+TGG 0.130240 4_3:+46540344 Msa0643500:intron
TTTCCTAATGAAGATGATTT+TGG 0.169950 4_3:+46538412 Msa0643500:CDS
GTAGTTTAAACTTCCTAATT+TGG 0.175627 4_3:+46540809 Msa0643500:three_prime_UTR
GAAAGTGAACGTCTGGATTT+AGG 0.177524 4_3:+46537785 Msa0643500:CDS
TTGTCTCAGTTTCCAGAATA+TGG 0.204078 4_3:+46533590 Msa0643500:intron
AACCATCTGCAATATCATTT+TGG 0.221232 4_3:-46538312 None:intergenic
TTTCCCAACAGCATTCTTCT+TGG 0.230199 4_3:-46533614 None:intergenic
GAAACTTTACCCACCAAATT+AGG 0.231208 4_3:-46540822 None:intergenic
CTGGTTGTGGCCAACTTTAC+AGG 0.240074 4_3:-46535137 None:intergenic
ATATTTATTTGTAAATAATT+TGG 0.242012 4_3:+46541003 Msa0643500:three_prime_UTR
GAACTTGTTTCAAGAACTTT+AGG 0.253657 4_3:+46540499 Msa0643500:three_prime_UTR
GCAAATACTTTGGCTGATTC+TGG 0.265030 4_3:+46538907 Msa0643500:CDS
CGTCTGGATTTAGGGATTCT+TGG 0.266687 4_3:+46537794 Msa0643500:CDS
CAATTTCTAAATACAATATC+TGG 0.271050 4_3:-46540533 None:intergenic
TGATTAGGGTTTGGAGATTA+GGG 0.273354 4_3:-46531169 None:intergenic
TCCGAAGGCTAAACATTTAC+AGG 0.274958 4_3:-46540897 None:intergenic
TTTCAATCGCATCACTTCTA+TGG 0.279502 4_3:+46537612 Msa0643500:CDS
CCAGATCCCAAAGCAGTTTC+GGG 0.280923 4_3:-46538586 None:intergenic
TGCAAATAAAATATTCCTAA+TGG 0.281978 4_3:-46540845 None:intergenic
GTGATTAGGGTTTGGAGATT+AGG 0.283221 4_3:-46531170 None:intergenic
TTCAATTCTAGACGCACTTT+TGG 0.288718 4_3:-46541028 None:intergenic
GCCAGATCCCAAAGCAGTTT+CGG 0.293735 4_3:-46538587 None:intergenic
ACTCCTTTGGAATTAAGTTT+AGG 0.304656 4_3:-46537115 None:intergenic
GGTGATGCTTCCACTCAAAA+TGG 0.305594 4_3:+46538844 Msa0643500:CDS
CTCTGGTGGAAGATATAAAT+TGG 0.307082 4_3:+46540611 Msa0643500:three_prime_UTR
ATTCTTCTTGGCCCATATTC+TGG 0.317429 4_3:-46533602 None:intergenic
GAAGTGATGCGATTGAAATA+AGG 0.318290 4_3:-46537607 None:intergenic
CCCTCTTTGGCAAATGATAT+TGG 0.318406 4_3:+46540653 Msa0643500:three_prime_UTR
GAAAGAGCAGGTGGCAAAAT+TGG 0.320071 4_3:+46533633 Msa0643500:CDS
CTGGTTTAAAACTTGGCATT+AGG 0.321743 4_3:+46537924 Msa0643500:CDS
AGAATGAATCGGAGGTGATT+AGG 0.322444 4_3:-46531184 None:intergenic
GGAGGAATCGCAATGGGAAT+TGG 0.324383 4_3:+46537945 Msa0643500:CDS
ACTCAGGAAAATGCAGATAT+CGG 0.327194 4_3:+46533897 Msa0643500:intron
TATACAGACCTAGCAGTTAA+TGG 0.329641 4_3:+46535879 Msa0643500:CDS
CCTCCGATTCATTCTTATTA+CGG 0.331934 4_3:+46531192 Msa0643500:five_prime_UTR
GAGGGGCAGGTGCAAGCATT+AGG 0.331985 4_3:-46540635 None:intergenic
CCCGAAACTGCTTTGGGATC+TGG 0.333745 4_3:+46538586 Msa0643500:CDS
CTTGTACCTTTCTATTGATT+CGG 0.341942 4_3:+46540457 Msa0643500:CDS
TGCTGATAGCGACAGTGATT+TGG 0.342121 4_3:+46537211 Msa0643500:CDS
CACGCGTCTGTCGTTGTGTT+GGG 0.342273 4_3:+46537168 Msa0643500:CDS
ATTCCAAAATCATCTTCATT+AGG 0.342360 4_3:-46538415 None:intergenic
CTCGGTGGAAGTTCATGCTT+GGG 0.346082 4_3:+46538385 Msa0643500:CDS
ATAGGTCCGATTGCTTCTTC+TGG 0.348679 4_3:+46531033 Msa0643500:five_prime_UTR
GTCATTGCCTTCTGCATCTC+AGG 0.353133 4_3:+46538450 Msa0643500:CDS
ATTGGCTCCCGAAACTGCTT+TGG 0.354081 4_3:+46538579 Msa0643500:CDS
TGAACGACAAGGTTCCATTC+AGG 0.356491 4_3:+46535841 Msa0643500:CDS
GACAACCCATTGGCATTTGC+TGG 0.356540 4_3:+46538670 Msa0643500:CDS
ATCACCATCCCGACCACTTT+CGG 0.356985 4_3:-46538071 None:intergenic
AAAGTGAACGTCTGGATTTA+GGG 0.357301 4_3:+46537786 Msa0643500:CDS
TGCTTGCACCTGCCCCTCTT+TGG 0.359053 4_3:+46540640 Msa0643500:three_prime_UTR
AGTTCACAATAAAATTTATC+AGG 0.361374 4_3:-46534365 None:intergenic
GGTAGATAATTGAAGAATAA+AGG 0.361702 4_3:-46540741 None:intergenic
GAATGAATCGGAGGTGATTA+GGG 0.364415 4_3:-46531183 None:intergenic
TTAGTTTGCGGCAACACGTC+CGG 0.366631 4_3:-46530991 None:intergenic
GGCCAATGGCATCTTCCTAA+TGG 0.367292 4_3:+46537815 Msa0643500:CDS
AGTGTTAACCAGGGTGGTGG+TGG 0.369509 4_3:+46538100 Msa0643500:CDS
ACCTGTAAATGTTTAGCCTT+CGG 0.369833 4_3:+46540896 Msa0643500:three_prime_UTR
TTGGCTCCCGAAACTGCTTT+GGG 0.370189 4_3:+46538580 Msa0643500:CDS
TGTGGAAGTACGTTGGAAAC+AGG 0.375354 4_3:+46534042 Msa0643500:CDS
ATTTAGAAATTGAAAGAAGT+TGG 0.375682 4_3:+46540544 Msa0643500:three_prime_UTR
AGTGATGAGGTGCAATTAAT+AGG 0.378729 4_3:-46538544 None:intergenic
CAGTATAAGCCTTCGTTGTC+CGG 0.381422 4_3:+46537253 Msa0643500:CDS
TTGATTCGGAATCGGAATAA+AGG 0.381805 4_3:+46540471 Msa0643500:CDS
ATGCCTTCCATAGGTTTCTC+TGG 0.386479 4_3:-46534332 None:intergenic
GGTGGGTAAAGTTTCCCATT+AGG 0.389548 4_3:+46540830 Msa0643500:three_prime_UTR
AGTATTTGCGCCATTGTCTC+TGG 0.389636 4_3:-46538893 None:intergenic
GACGACTCAGCTGGTCTTGT+GGG 0.390350 4_3:-46538721 None:intergenic
GCCAATATCATTTGCCAAAG+AGG 0.391429 4_3:-46540654 None:intergenic
CTTACTCTCGGAGGTGGTGC+TGG 0.391540 4_3:+46538811 Msa0643500:CDS
GTTCTCTCCACGCACTGCAC+TGG 0.391843 4_3:-46535664 None:intergenic
AACACGTCCGGGTTAAGTTT+CGG 0.392113 4_3:-46530979 None:intergenic
CAGCACCACCTCCGAGAGTA+AGG 0.392682 4_3:-46538810 None:intergenic
AACACTGAAGCAAGTAAAAC+AGG 0.397029 4_3:+46537880 Msa0643500:CDS
GGTCTATTAGTTGTTCGAAT+AGG 0.398032 4_3:-46536054 None:intergenic
ATGGTGTTTCCACTGAAGAT+TGG 0.399962 4_3:+46538782 Msa0643500:CDS
CAATAAAATTTATCAGGAAC+TGG 0.400321 4_3:-46534359 None:intergenic
AATGCAAGGTTTGAATCTTC+CGG 0.401374 4_3:-46537386 None:intergenic
GCAAATAAAATATTCCTAAT+GGG 0.402108 4_3:-46540844 None:intergenic
TGTCTCAGTTTCCAGAATAT+GGG 0.403486 4_3:+46533591 Msa0643500:intron
AATCGGAGGTGATTAGGGTT+TGG 0.403557 4_3:-46531178 None:intergenic
CTGCATCAGAACCGAACAAT+TGG 0.403934 4_3:-46538486 None:intergenic
GAGACAACAAACACCTCTTC+TGG 0.405142 4_3:+46537983 Msa0643500:CDS
CGGCAGGGAGTATTGATTGA+TGG 0.410219 4_3:-46531127 None:intergenic
TGATGGCTCTTGGCGTGTTA+AGG 0.415872 4_3:+46537754 Msa0643500:CDS
TCAGTTAGGACTTTCAAAAC+AGG 0.417332 4_3:+46532732 Msa0643500:CDS
GAAGAGGTGTTTGTTGTCTC+GGG 0.417393 4_3:-46537980 None:intergenic
CAGAAGGCGCAGTTTGCAAC+AGG 0.417817 4_3:+46536331 Msa0643500:CDS
AGAAGAGGTGTTTGTTGTCT+CGG 0.418486 4_3:-46537981 None:intergenic
AAGTGATGCGATTGAAATAA+GGG 0.420028 4_3:-46537606 None:intergenic
ATACATACTGCCACATTATG+AGG 0.420916 4_3:-46540580 None:intergenic
ATTGGAATAACAACTTGTTC+AGG 0.423238 4_3:-46538034 None:intergenic
ACCTTGCTCATCTGAGAGAA+TGG 0.424806 4_3:-46532992 None:intergenic
TGAAGAAGACAATGACATAT+TGG 0.426237 4_3:+46538261 Msa0643500:CDS
TCCCTTTGTACTTCTACTGC+TGG 0.427026 4_3:+46537839 Msa0643500:CDS
CCTTTCTATTGATTCGGAAT+CGG 0.428452 4_3:+46540463 Msa0643500:CDS
TGGTGGTTGTTATTTGCAAT+TGG 0.428837 4_3:-46538292 None:intergenic
GGCTCACCGTCAGACTCCTT+TGG 0.429043 4_3:-46537128 None:intergenic
GGTCCAGGATTCCAATTGTT+CGG 0.430991 4_3:+46538475 Msa0643500:CDS
TCGGAGCCACTGCTGCTCAT+TGG 0.433629 4_3:-46538052 None:intergenic
TTCTCTCCACGCACTGCACT+GGG 0.434383 4_3:-46535663 None:intergenic
GATCAAGCAAATGTCTCTAA+TGG 0.441265 4_3:+46538763 Msa0643500:CDS
AGGGGCAGGTGCAAGCATTA+GGG 0.443121 4_3:-46540634 None:intergenic
AAGGATGTGCTGACTCAGTT+AGG 0.444292 4_3:+46532718 Msa0643500:CDS
TCCTTTGTTACCTGTAAAGT+TGG 0.445895 4_3:+46535127 Msa0643500:CDS
GAGGAATCGCAATGGGAATT+GGG 0.446679 4_3:+46537946 Msa0643500:CDS
GGTTCAAGAATGAAGATTGC+CGG 0.447230 4_3:+46537367 Msa0643500:CDS
GCGAGCATCACATACTGTTA+AGG 0.451776 4_3:-46536282 None:intergenic
CTCTTACAAGATTCCTCTGC+TGG 0.453644 4_3:+46538613 Msa0643500:CDS
TGCTGACTTAAACGGTGGTT+TGG 0.454513 4_3:+46538645 Msa0643500:CDS
GGACCTGCTGGTTTAAAACT+TGG 0.454520 4_3:+46537917 Msa0643500:CDS
TCTGCATCTCAGGCTGGTCC+AGG 0.454585 4_3:+46538460 Msa0643500:CDS
TTGCCTTCTGCATCTCAGGC+TGG 0.454882 4_3:+46538454 Msa0643500:CDS
GAAGTACAAAGGGATCCATT+AGG 0.456957 4_3:-46537830 None:intergenic
GTTGAAATCACGCACGCGGC+AGG 0.457233 4_3:-46531143 None:intergenic
CGGACAGATGCTGACTTAAA+CGG 0.458317 4_3:+46538637 Msa0643500:CDS
GCGTATGGGTCAACAATTCC+AGG 0.461698 4_3:-46538349 None:intergenic
GTGGAAATGGATTTGGTAGC+CGG 0.462405 4_3:+46531392 Msa0643500:exon
ATTGAAGAATAAAGGAATGA+TGG 0.462704 4_3:-46540733 None:intergenic
ATGCTTGATATTGAAGTTGA+CGG 0.463949 4_3:+46540698 Msa0643500:three_prime_UTR
CACATCTGCTCAGGTGGGTG+GGG 0.465487 4_3:+46538213 Msa0643500:CDS
ATGCAGAAGGCAATGACCAC+AGG 0.465646 4_3:-46538444 None:intergenic
AGTATGTATTGAGGCATCTC+TGG 0.469577 4_3:+46540594 Msa0643500:three_prime_UTR
TCACCCATCAGTCGGAATAC+TGG 0.470078 4_3:-46535156 None:intergenic
AGGTTCCATTCAGGATTCAA+TGG 0.470932 4_3:+46535850 Msa0643500:CDS
TGTAGTAGATTGAATTTGAA+AGG 0.471804 4_3:-46533998 None:intergenic
CAGTGGCTCCGAAAGTGGTC+GGG 0.478789 4_3:+46538063 Msa0643500:CDS
TGCAGAGGCCTCTGATGCAT+TGG 0.480231 4_3:+46538504 Msa0643500:CDS
AGACCTGGTTCTCAGTTGCT+TGG 0.480715 4_3:+46536072 Msa0643500:CDS
AGACAATGGCGCAAATACTT+TGG 0.481858 4_3:+46538897 Msa0643500:CDS
GGTTACTCCATGCCACCTCC+TGG 0.482671 4_3:+46538331 Msa0643500:CDS
CGTGCAAGAGCATCTTCAAA+AGG 0.484446 4_3:-46537149 None:intergenic
AGATTCTGATCTTCAGCGTA+TGG 0.484700 4_3:-46538364 None:intergenic
AAAGAGTGAAAGTGAACGTC+TGG 0.487302 4_3:+46537778 Msa0643500:CDS
GCACGCGTCTGTCGTTGTGT+TGG 0.491160 4_3:+46537167 Msa0643500:CDS
CTCAGGAAAATGCAGATATC+GGG 0.492701 4_3:+46533898 Msa0643500:intron
ATCTACCGAGGGTATAGTGC+TGG 0.494005 4_3:+46540757 Msa0643500:three_prime_UTR
TTGCCGCAAACTAACCGTAT+TGG 0.495904 4_3:+46531000 Msa0643500:five_prime_UTR
AATTGGTGGATGACACATAT+AGG 0.496338 4_3:+46533650 Msa0643500:CDS
TAGTTTGCGGCAACACGTCC+GGG 0.496662 4_3:-46530990 None:intergenic
ATCATTTGCCAAAGAGGGGC+AGG 0.497273 4_3:-46540648 None:intergenic
AAAACAAGAATTTGATGTTG+AGG 0.498260 4_3:+46535723 Msa0643500:CDS
GTTTAAACTTCCTAATTTGG+TGG 0.500127 4_3:+46540812 Msa0643500:three_prime_UTR
AGGTGAAGCCTGATGGCTCT+TGG 0.500229 4_3:+46537744 Msa0643500:CDS
TGATCTAGCATCAAAGGGTC+AGG 0.502689 4_3:+46533927 Msa0643500:CDS
TTTGCGCCATTGTCTCTGGA+TGG 0.506095 4_3:-46538889 None:intergenic
ATTGATTATTCTACTACCAA+TGG 0.508427 4_3:+46538127 Msa0643500:CDS
TAGAAATTGAAAGAAGTTGG+AGG 0.509262 4_3:+46540547 Msa0643500:three_prime_UTR
AACTGATGTGTTGCCACACT+TGG 0.509642 4_3:-46534298 None:intergenic
ATACCGTAATAAGAATGAAT+CGG 0.509830 4_3:-46531195 None:intergenic
GGAAACAGGGGATTTGATCA+AGG 0.511350 4_3:+46534056 Msa0643500:CDS
GAACCGAACAATTGGAATCC+TGG 0.511458 4_3:-46538478 None:intergenic
GTATAGTTGGTCATTCAATC+TGG 0.511530 4_3:+46540787 Msa0643500:three_prime_UTR
GTGTTAACCAGGGTGGTGGT+GGG 0.511734 4_3:+46538101 Msa0643500:CDS
AGCCACTGATCTAGCATCAA+AGG 0.512610 4_3:+46533921 Msa0643500:CDS
ATATTGAAGTTGACGGGTTG+TGG 0.513525 4_3:+46540705 Msa0643500:three_prime_UTR
CCAATATCATTTGCCAAAGA+GGG 0.514702 4_3:-46540653 None:intergenic
AATAATGTTGATTTAGCTCG+TGG 0.515010 4_3:+46538175 Msa0643500:CDS
TCTCGGTGGAAGTTCATGCT+TGG 0.515187 4_3:+46538384 Msa0643500:CDS
ATCAATAGAAAGGTACAAGC+GGG 0.515538 4_3:-46540453 None:intergenic
TTTAAACTTCCTAATTTGGT+GGG 0.519540 4_3:+46540813 Msa0643500:three_prime_UTR
TACTACCAATGGAATTGAGA+TGG 0.520220 4_3:+46538138 Msa0643500:CDS
AATTCTCTTGTTGAATCCGA+AGG 0.520603 4_3:-46540912 None:intergenic
GGAGCTAACGGTCGTGATGA+TGG 0.522397 4_3:+46536093 Msa0643500:CDS
TTGCGCCATTGTCTCTGGAT+GGG 0.523797 4_3:-46538888 None:intergenic
TTAACACGCCAAGAGCCATC+AGG 0.524906 4_3:-46537752 None:intergenic
ACACATCTGCTCAGGTGGGT+GGG 0.527629 4_3:+46538212 Msa0643500:CDS
TAAAATTTATCAGGAACTGG+TGG 0.527907 4_3:-46534356 None:intergenic
TCTCAGTTGCTTGGAGCTAA+CGG 0.528194 4_3:+46536081 Msa0643500:CDS
GTTTAAAACTTGGCATTAGG+AGG 0.528847 4_3:+46537927 Msa0643500:CDS
TCCAGCAGTAGAAGTACAAA+GGG 0.531371 4_3:-46537840 None:intergenic
AGCAGCAGTGGCTCCGAAAG+TGG 0.531558 4_3:+46538058 Msa0643500:CDS
AACAATTCCAGGAGGTGGCA+TGG 0.531645 4_3:-46538338 None:intergenic
GCATTAGGAGGAATCGCAAT+GGG 0.531717 4_3:+46537939 Msa0643500:CDS
TGCTTGATATTGAAGTTGAC+GGG 0.533300 4_3:+46540699 Msa0643500:three_prime_UTR
TGAAGATGTTACAGAGGTTG+AGG 0.533950 4_3:+46537724 Msa0643500:CDS
ACCACCACCCTGGTTAACAC+TGG 0.535166 4_3:-46538098 None:intergenic
ATTCAAACCTTGCATTCACA+TGG 0.535289 4_3:+46537393 Msa0643500:CDS
TGAAAGTACCATTAACTGCT+AGG 0.535333 4_3:-46535887 None:intergenic
AACACATCTGCTCAGGTGGG+TGG 0.535405 4_3:+46538211 Msa0643500:CDS
CATCCTTGAGCTCTTTGATA+CGG 0.536276 4_3:-46532702 None:intergenic
CATCTCCAGCAAATGCCAAT+GGG 0.537152 4_3:-46538675 None:intergenic
ATTTAGGGATTCTTGGCCAA+TGG 0.537251 4_3:+46537801 Msa0643500:CDS
TTCAAAACAGGGAAAGAAGC+AGG 0.537787 4_3:+46532744 Msa0643500:CDS
CCGATTCCGAATCAATAGAA+AGG 0.537993 4_3:-46540463 None:intergenic
TATTATTCCAGAGAAACCTA+TGG 0.538683 4_3:+46534325 Msa0643500:CDS
AATGAATCAACGGTCAAGAA+AGG 0.539654 4_3:+46537444 Msa0643500:CDS
GGATTTGGTAGCCGGTATCA+AGG 0.542036 4_3:+46531400 Msa0643500:CDS
ATCAGTCGGAATACTGGTTG+TGG 0.542117 4_3:-46535150 None:intergenic
TGATGATCCCAGTGTTAACC+AGG 0.542672 4_3:+46538090 Msa0643500:CDS
TGCGCATAACACATCTGCTC+AGG 0.543129 4_3:+46538204 Msa0643500:CDS
TTGAAATCACGCACGCGGCA+GGG 0.544035 4_3:-46531142 None:intergenic
GCTCCAAGCAACTGAGAACC+AGG 0.545103 4_3:-46536075 None:intergenic
GGTGGTGCTGGCGGTAGTAA+TGG 0.547848 4_3:+46538823 Msa0643500:CDS
TATCCAATACGGTTAGTTTG+CGG 0.549016 4_3:-46531003 None:intergenic
GCATAACACATCTGCTCAGG+TGG 0.551045 4_3:+46538207 Msa0643500:CDS
AGAGCAAGTAGACCAAGGTC+AGG 0.551131 4_3:+46540389 Msa0643500:CDS
TAGCGACAGTGATTTGGAAG+TGG 0.551318 4_3:+46537217 Msa0643500:CDS
TGGTTGTTATTTGCAATTGG+AGG 0.553691 4_3:-46538289 None:intergenic
ACAACCAGTATTCCGACTGA+TGG 0.554333 4_3:+46535152 Msa0643500:CDS
ATCACTGAACGGTTATGCAT+TGG 0.555537 4_3:+46538561 Msa0643500:CDS
TGGAGAAACAAGAATCTTTG+CGG 0.556791 4_3:-46540676 None:intergenic
ACTGGTGGGATGCCTTCCAT+AGG 0.557028 4_3:-46534341 None:intergenic
TCATCTCCAGCAAATGCCAA+TGG 0.557087 4_3:-46538676 None:intergenic
TGGGCCAAGAAGAATGCTGT+TGG 0.557207 4_3:+46533610 Msa0643500:CDS
GCCACTGATCTAGCATCAAA+GGG 0.557914 4_3:+46533922 Msa0643500:CDS
CCCAGTGTTAACCAGGGTGG+TGG 0.558647 4_3:+46538097 Msa0643500:CDS
GATCCTAAACTTAATTCCAA+AGG 0.559168 4_3:+46537112 Msa0643500:intron
GCAGTGGCTCCGAAAGTGGT+CGG 0.559727 4_3:+46538062 Msa0643500:CDS
GGGCCAAGAAGAATGCTGTT+GGG 0.560934 4_3:+46533611 Msa0643500:CDS
TTCTGTAGGATCTCGTCGAT+CGG 0.560941 4_3:+46532962 Msa0643500:intron
CACCAAAATGATATTGCAGA+TGG 0.562331 4_3:+46538310 Msa0643500:CDS
GATTCTGATCTTCAGCGTAT+GGG 0.562479 4_3:-46538363 None:intergenic
CCACCACCCTGGTTAACACT+GGG 0.563823 4_3:-46538097 None:intergenic
ACAGATGCTGACTTAAACGG+TGG 0.564719 4_3:+46538640 Msa0643500:CDS
TTCTGGTCATATATTAAGAG+AGG 0.564933 4_3:+46538000 Msa0643500:CDS
AGAATCCATCTCAATTCCAT+TGG 0.565368 4_3:-46538143 None:intergenic
GGGTCAACAATTCCAGGAGG+TGG 0.565780 4_3:-46538343 None:intergenic
ACGCGTCTGTCGTTGTGTTG+GGG 0.565862 4_3:+46537169 Msa0643500:CDS
CGTATTGGATAATCGTGGAT+AGG 0.565899 4_3:+46531015 Msa0643500:five_prime_UTR
AGACGACTCAGCTGGTCTTG+TGG 0.566685 4_3:-46538722 None:intergenic
GGCTCCGAAAGTGGTCGGGA+TGG 0.567316 4_3:+46538067 Msa0643500:CDS
AGAGCAGGTGGCAAAATTGG+TGG 0.568651 4_3:+46533636 Msa0643500:CDS
ATGATGATATACCTTGATAC+CGG 0.569499 4_3:-46531411 None:intergenic
TTTCCGTATCAAAGAGCTCA+AGG 0.570893 4_3:+46532699 Msa0643500:CDS
TGTGGCCATTGAATCCTGAA+TGG 0.572530 4_3:-46535855 None:intergenic
GTCAACTTCAATATCAAGCA+TGG 0.573150 4_3:-46540696 None:intergenic
CTCCACGCACTGCACTGGGT+TGG 0.574223 4_3:-46535659 None:intergenic
TATTCTTCAATTATCTACCG+AGG 0.574617 4_3:+46540745 Msa0643500:three_prime_UTR
GTGGAAGTACGTTGGAAACA+GGG 0.578513 4_3:+46534043 Msa0643500:CDS
CTCCAGCAGTAGAAGTACAA+AGG 0.578719 4_3:-46537841 None:intergenic
ACCCTTTGATGCTAGATCAG+TGG 0.579842 4_3:-46533923 None:intergenic
ATTCTTCAATTATCTACCGA+GGG 0.581186 4_3:+46540746 Msa0643500:three_prime_UTR
TTCTGCATAGACGACTCAGC+TGG 0.582789 4_3:-46538730 None:intergenic
TGGTTTGGTTGACAACCCAT+TGG 0.583485 4_3:+46538660 Msa0643500:CDS
TACGCTGAAGATCAGAATCT+CGG 0.583616 4_3:+46538367 Msa0643500:CDS
CAAATGAACCAATGCATCAG+AGG 0.583738 4_3:-46538512 None:intergenic
ATCCATTAGGAAGATGCCAT+TGG 0.587077 4_3:-46537817 None:intergenic
ATGTATTGAGGCATCTCTGG+TGG 0.587373 4_3:+46540597 Msa0643500:three_prime_UTR
AAACAACCCATGTGAATGCA+AGG 0.588755 4_3:-46537400 None:intergenic
GTCAGATAGTAGTAATGTGA+AGG 0.588763 4_3:+46533954 Msa0643500:CDS
GAGGTTGAGGTGAAGCCTGA+TGG 0.589171 4_3:+46537737 Msa0643500:CDS
TCTTAATATATGACCAGAAG+AGG 0.589965 4_3:-46537996 None:intergenic
TAGGCGTTCGAATTGTCAGA+AGG 0.591663 4_3:+46536315 Msa0643500:CDS
TATTACCATTTATAGATGAG+TGG 0.593609 4_3:+46537346 Msa0643500:intron
GATTGGACATCCCTTACTCT+CGG 0.594442 4_3:+46538799 Msa0643500:CDS
GAATGCTGTTGGGAAAGAGC+AGG 0.595394 4_3:+46533621 Msa0643500:CDS
TGCATAACCGTTCAGTGATG+AGG 0.596581 4_3:-46538557 None:intergenic
CTATCCACGATTATCCAATA+CGG 0.598911 4_3:-46531014 None:intergenic
TCAACTCACAAGAGCAGACA+AGG 0.599982 4_3:+46535690 Msa0643500:CDS
GTTATTCCAATGAGCAGCAG+TGG 0.601585 4_3:+46538046 Msa0643500:CDS
ATTGTTCGGTTCTGATGCAG+AGG 0.604658 4_3:+46538489 Msa0643500:CDS
AAAATTTATCAGGAACTGGT+GGG 0.607402 4_3:-46534355 None:intergenic
GTGAAAGGACTACCTGACCT+TGG 0.608339 4_3:-46540401 None:intergenic
AAGGGATGTCCAATCTTCAG+TGG 0.608756 4_3:-46538791 None:intergenic
CAACCAGTATTCCGACTGAT+GGG 0.609101 4_3:+46535153 Msa0643500:CDS
ATCACGCCGCATACAAAAGA+CGG 0.610322 4_3:+46536245 Msa0643500:CDS
AGCATCTGTCCGTCCAGCAG+AGG 0.610516 4_3:-46538626 None:intergenic
TGGCACACCGAAACTTAACC+CGG 0.611981 4_3:+46530972 Msa0643500:five_prime_UTR
CAGTTAGGACTTTCAAAACA+GGG 0.613916 4_3:+46532733 Msa0643500:CDS
ACTCTCGGAGGTGGTGCTGG+CGG 0.614564 4_3:+46538814 Msa0643500:CDS
GGCATTAGGAGGAATCGCAA+TGG 0.614693 4_3:+46537938 Msa0643500:CDS
ACATCCCTTACTCTCGGAGG+TGG 0.615368 4_3:+46538805 Msa0643500:CDS
CGCGTCTGTCGTTGTGTTGG+GGG 0.617331 4_3:+46537170 Msa0643500:CDS
TGCTGTTGGGAAAGAGCAGG+TGG 0.617341 4_3:+46533624 Msa0643500:CDS
TACAAGATTCCTCTGCTGGA+CGG 0.618020 4_3:+46538617 Msa0643500:CDS
TTCAAACCTTGCATTCACAT+GGG 0.620953 4_3:+46537394 Msa0643500:CDS
TAATGTGGCAGTATGTATTG+AGG 0.621583 4_3:+46540585 Msa0643500:three_prime_UTR
TGCAGAAGGCAATGACCACA+GGG 0.622669 4_3:-46538443 None:intergenic
CAAGTCCCATCCAGAGACAA+TGG 0.625078 4_3:+46538883 Msa0643500:CDS
ACAAAGATTCGCTGTCTCTG+TGG 0.626008 4_3:+46534024 Msa0643500:CDS
CAATATGCCCACCACCACCC+TGG 0.626286 4_3:-46538108 None:intergenic
TAAAACCAGCACTATACCCT+CGG 0.626339 4_3:-46540762 None:intergenic
TCGGTGGAAGTTCATGCTTG+GGG 0.626592 4_3:+46538386 Msa0643500:CDS
TACCAACCCAGTGCAGTGCG+TGG 0.627424 4_3:+46535657 Msa0643500:CDS
AGCACCACCTCCGAGAGTAA+GGG 0.628927 4_3:-46538809 None:intergenic
TTAATTCCAAAGGAGTCTGA+CGG 0.634359 4_3:+46537122 Msa0643500:CDS
GGACCAGCCTGAGATGCAGA+AGG 0.640187 4_3:-46538457 None:intergenic
TCCATTCTCTCAGATGAGCA+AGG 0.640347 4_3:+46532991 Msa0643500:CDS
CCATGTACTCACCCATCAGT+CGG 0.640779 4_3:-46535164 None:intergenic
GCCAACTTTACAGGTAACAA+AGG 0.641343 4_3:-46535128 None:intergenic
CTGTCTCTGTGGAAGTACGT+TGG 0.645104 4_3:+46534035 Msa0643500:CDS
AATTGCACCTCATCACTGAA+CGG 0.645687 4_3:+46538550 Msa0643500:CDS
CATAACACATCTGCTCAGGT+GGG 0.645991 4_3:+46538208 Msa0643500:CDS
ATTCCAGAGAAACCTATGGA+AGG 0.646238 4_3:+46534329 Msa0643500:CDS
GATCAGATTGGTTACTACTG+CGG 0.646694 4_3:+46531297 Msa0643500:intron
CTGAAGCAAGTAAAACAGGA+AGG 0.648396 4_3:+46537884 Msa0643500:CDS
CAATATCATTTGCCAAAGAG+GGG 0.648455 4_3:-46540652 None:intergenic
GTGTATGCTTCTGAACGACA+AGG 0.650450 4_3:+46535830 Msa0643500:CDS
TGGAAGTACGTTGGAAACAG+GGG 0.654859 4_3:+46534044 Msa0643500:CDS
CCGTAATAAGAATGAATCGG+AGG 0.655984 4_3:-46531192 None:intergenic
TTGCGGTGAAGATGTTACAG+AGG 0.656546 4_3:+46537718 Msa0643500:CDS
ACGACTCAGCTGGTCTTGTG+GGG 0.660023 4_3:-46538720 None:intergenic
AATCAATAGAAAGGTACAAG+CGG 0.660315 4_3:-46540454 None:intergenic
ATTCGAACAACTAATAGACC+TGG 0.670126 4_3:+46536057 Msa0643500:CDS
CTGGTACAGATGATTAATTG+CGG 0.671508 4_3:+46537701 Msa0643500:intron
CACAAGAGCAGACAAGGACA+TGG 0.672436 4_3:+46535696 Msa0643500:CDS
CTGACAGAGCAAGTAGACCA+AGG 0.682371 4_3:+46540384 Msa0643500:CDS
AAAGCCTTACCGGACAACGA+AGG 0.691607 4_3:-46537262 None:intergenic
GTTTGTTGAAATCACGCACG+CGG 0.693079 4_3:-46531147 None:intergenic
TCAATAGAAAGGTACAAGCG+GGG 0.705417 4_3:-46540452 None:intergenic
CTAACCGTATTGGATAATCG+TGG 0.706163 4_3:+46531010 Msa0643500:five_prime_UTR
AGAAGCGAATAATCAACACA+TGG 0.712746 4_3:-46531325 None:intergenic
GCTGAAGATCAGAATCTCGG+TGG 0.714451 4_3:+46538370 Msa0643500:CDS
ATGATGCAAGATGCCAAGTG+TGG 0.722474 4_3:+46534285 Msa0643500:CDS
ACTGCTAGGTCTGTATACTG+TGG 0.722592 4_3:-46535873 None:intergenic
TGGACATCCCTTACTCTCGG+AGG 0.740031 4_3:+46538802 Msa0643500:CDS
GATGATCCCAGTGTTAACCA+GGG 0.753201 4_3:+46538091 Msa0643500:CDS
TATGGGTCAACAATTCCAGG+AGG 0.767647 4_3:-46538346 None:intergenic
GATCCCAGTGTTAACCAGGG+TGG 0.772459 4_3:+46538094 Msa0643500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGATATTGAATTTATA+TGG + chr4_3:46531576-46531595 Msa0643500:intron 10.0%
!! AAAAATGCTAAATAATATAA+AGG - chr4_3:46535037-46535056 None:intergenic 10.0%
!!! TTTTCTTTTCTTTTATTTAA+TGG + chr4_3:46535487-46535506 Msa0643500:intron 10.0%
!!! TTTCTTTTCTTTTATTTAAT+GGG + chr4_3:46535488-46535507 Msa0643500:intron 10.0%
!! AAATAAAAGTTCAATTTAAA+AGG + chr4_3:46539892-46539911 Msa0643500:intron 10.0%
!! AGAAAAAATTAAGTTAGAAT+TGG - chr4_3:46531229-46531248 None:intergenic 15.0%
!! TATTAAATTCAGGATTAAAA+AGG - chr4_3:46532873-46532892 None:intergenic 15.0%
!!! TTTTAACAAAACATGAAAAT+AGG - chr4_3:46534920-46534939 None:intergenic 15.0%
!!! TTTCATGTTTTGTTAAAAAA+TGG + chr4_3:46534922-46534941 Msa0643500:intron 15.0%
!!! ATTATTTTACTACAAAACAA+AGG - chr4_3:46535233-46535252 None:intergenic 15.0%
!!! TAATTGTCTTGTTTAATATA+TGG + chr4_3:46535249-46535268 Msa0643500:intron 15.0%
!! CTTATACAAGTTAAAATAAA+TGG - chr4_3:46536134-46536153 None:intergenic 15.0%
!!! TTTTAAATTTCAAACCAATA+GGG - chr4_3:46536507-46536526 None:intergenic 15.0%
!!! TTTTTAAATTTCAAACCAAT+AGG - chr4_3:46536508-46536527 None:intergenic 15.0%
!! AAACAATTAAATTCTTCATA+AGG - chr4_3:46537527-46537546 None:intergenic 15.0%
!! AAGATTTATGAACATATAAA+TGG - chr4_3:46537653-46537672 None:intergenic 15.0%
!! TATTTGAAGACTAATTTATT+TGG + chr4_3:46537674-46537693 Msa0643500:intron 15.0%
!! TTGAAATCATACAATTTAAT+GGG - chr4_3:46539204-46539223 None:intergenic 15.0%
!!! TTTGAAATCATACAATTTAA+TGG - chr4_3:46539205-46539224 None:intergenic 15.0%
!!! CAATTTATTTTTCATTTGAT+GGG + chr4_3:46539726-46539745 Msa0643500:intron 15.0%
!!! TTGAACTTTTATTTAAAGTT+AGG - chr4_3:46539886-46539905 None:intergenic 15.0%
!! TAACTAAGTAAACAAAATAT+GGG - chr4_3:46540112-46540131 None:intergenic 15.0%
!!! TTTTGATATTTTGAAAAATG+TGG + chr4_3:46540149-46540168 Msa0643500:intron 15.0%
!!! GAATATTTTATTTGCATTTT+TGG + chr4_3:46540852-46540871 Msa0643500:three_prime_UTR 15.0%
!!! AAATAGTTTTTCTATTTCAA+GGG + chr4_3:46540936-46540955 Msa0643500:three_prime_UTR 15.0%
!! TGAAATCAAATGAAAATGAA+TGG - chr4_3:46531269-46531288 None:intergenic 20.0%
!!! TCATTAATTTTTGCTTATGT+TGG + chr4_3:46531457-46531476 Msa0643500:intron 20.0%
!!! AATTTTTTTATCTTGTCTAG+TGG + chr4_3:46531804-46531823 Msa0643500:intron 20.0%
!! ATTTAAGAACATAAACTACA+AGG - chr4_3:46531947-46531966 None:intergenic 20.0%
!! GAAGAGGATTAATATTTAAA+AGG + chr4_3:46532010-46532029 Msa0643500:intron 20.0%
!! CATAATAAAATGAACTTGAA+AGG - chr4_3:46532462-46532481 None:intergenic 20.0%
!! GAAAAGCAATATAAGTAAAA+TGG + chr4_3:46532505-46532524 Msa0643500:intron 20.0%
!!! AATTTCAGTTGTATTTTTTC+TGG + chr4_3:46532547-46532566 Msa0643500:intron 20.0%
!! TTATGAATCATTTACTGAAT+AGG + chr4_3:46533148-46533167 Msa0643500:intron 20.0%
!! CTATTATTGCTAATTTCAAT+AGG - chr4_3:46533210-46533229 None:intergenic 20.0%
!! AGAGAGAGAAAAAAAAATAA+GGG - chr4_3:46533285-46533304 None:intergenic 20.0%
!! AAGAGAGAGAAAAAAAAATA+AGG - chr4_3:46533286-46533305 None:intergenic 20.0%
!!! TTAATTGTGATTTTATCATG+TGG + chr4_3:46533509-46533528 Msa0643500:intron 20.0%
!!! TAATTGTGATTTTATCATGT+GGG + chr4_3:46533510-46533529 Msa0643500:intron 20.0%
!! AACTCATAACTTAAAATGAT+TGG + chr4_3:46533744-46533763 Msa0643500:intron 20.0%
!! AGTTCACAATAAAATTTATC+AGG - chr4_3:46534368-46534387 None:intergenic 20.0%
!! TACTTATTGCGTTAAATTTA+TGG + chr4_3:46534783-46534802 Msa0643500:intron 20.0%
!!! TCTGTTTTCAAATATTTGTA+TGG + chr4_3:46534966-46534985 Msa0643500:intron 20.0%
!!! CTGTTTTCAAATATTTGTAT+GGG + chr4_3:46534967-46534986 Msa0643500:intron 20.0%
!! AACAGAAAATATGAAATTAG+TGG - chr4_3:46535070-46535089 None:intergenic 20.0%
!! TATTGAAAATTAGACATAGT+TGG + chr4_3:46535195-46535214 Msa0643500:intron 20.0%
!! AACAAAATATAAGTGGTAAA+TGG - chr4_3:46535399-46535418 None:intergenic 20.0%
!! TTCAATCAACAAAATATAAG+TGG - chr4_3:46535406-46535425 None:intergenic 20.0%
!!! TTTTGTTGATTGAAATTCTA+TGG + chr4_3:46535412-46535431 Msa0643500:intron 20.0%
!!! TATTTTGAAAAATTACGTGT+AGG + chr4_3:46535803-46535822 Msa0643500:intron 20.0%
!! GTAATAGAAAACTGATTAAT+AGG - chr4_3:46537332-46537351 None:intergenic 20.0%
!! AGAACATTTATGAATTAGAA+GGG - chr4_3:46538948-46538967 None:intergenic 20.0%
!! AAGAACATTTATGAATTAGA+AGG - chr4_3:46538949-46538968 None:intergenic 20.0%
!! ATCAATATGAAATCAATCAT+AGG + chr4_3:46539232-46539251 Msa0643500:intron 20.0%
!! TATAATATAGCCAAATAGAT+TGG - chr4_3:46539410-46539429 None:intergenic 20.0%
!! ATGAAAAATAAATTGCAACT+TGG - chr4_3:46539721-46539740 None:intergenic 20.0%
!!! GCAATTTATTTTTCATTTGA+TGG + chr4_3:46539725-46539744 Msa0643500:intron 20.0%
!!! GTTCTTAATTCTTTGATTTT+TGG + chr4_3:46539854-46539873 Msa0643500:intron 20.0%
!! CTAACTAAGTAAACAAAATA+TGG - chr4_3:46540113-46540132 None:intergenic 20.0%
!! CAATTTCTAAATACAATATC+TGG - chr4_3:46540536-46540555 None:intergenic 20.0%
!! ATTTAGAAATTGAAAGAAGT+TGG + chr4_3:46540544-46540563 Msa0643500:three_prime_UTR 20.0%
!! GCAAATAAAATATTCCTAAT+GGG - chr4_3:46540847-46540866 None:intergenic 20.0%
!! TGCAAATAAAATATTCCTAA+TGG - chr4_3:46540848-46540867 None:intergenic 20.0%
!!! CAAATAGTTTTTCTATTTCA+AGG + chr4_3:46540935-46540954 Msa0643500:three_prime_UTR 20.0%
!! TTAAATCCAGATGTAAAAAT+GGG - chr4_3:46540983-46541002 None:intergenic 20.0%
!! TTTAAATCCAGATGTAAAAA+TGG - chr4_3:46540984-46541003 None:intergenic 20.0%
! ATACCGTAATAAGAATGAAT+CGG - chr4_3:46531198-46531217 None:intergenic 25.0%
!!! TTCATTTGATTTGATCAGAT+TGG + chr4_3:46531285-46531304 Msa0643500:intron 25.0%
! TATTGAATTTATATGGACAG+TGG + chr4_3:46531583-46531602 Msa0643500:intron 25.0%
!!! GTGTTATATAGTTTTAGTCA+TGG + chr4_3:46531672-46531691 Msa0643500:intron 25.0%
! TAGTGGAAAATAATGAAGTT+TGG + chr4_3:46531821-46531840 Msa0643500:intron 25.0%
! TCTTATTATTCTTAGCTGTT+GGG - chr4_3:46531868-46531887 None:intergenic 25.0%
! ATCTTATTATTCTTAGCTGT+TGG - chr4_3:46531869-46531888 None:intergenic 25.0%
!!! AATTCACTACCAGTTTTATT+AGG - chr4_3:46532161-46532180 None:intergenic 25.0%
!!! CTGGTAGTGAATTATTTTAT+TGG + chr4_3:46532168-46532187 Msa0643500:intron 25.0%
! AACTATTGTTTAGTTAAGCA+TGG + chr4_3:46532304-46532323 Msa0643500:intron 25.0%
!! ATTGATTTAAAAGACTGTCA+AGG - chr4_3:46532364-46532383 None:intergenic 25.0%
! TTATGCGGTGATATATTAAT+TGG + chr4_3:46532630-46532649 Msa0643500:intron 25.0%
! TATGCGGTGATATATTAATT+GGG + chr4_3:46532631-46532650 Msa0643500:intron 25.0%
!! GTTAATTTTTCCTATAAGAG+AGG - chr4_3:46532676-46532695 None:intergenic 25.0%
! ACAAATAACATTGACAGATT+TGG - chr4_3:46532789-46532808 None:intergenic 25.0%
!! CTGAATTTAATATGCTGTTT+CGG + chr4_3:46532881-46532900 Msa0643500:intron 25.0%
! TGATATTAATACCGATGTAT+TGG + chr4_3:46533089-46533108 Msa0643500:intron 25.0%
! TGCTAATTTCAATAGGATAA+TGG - chr4_3:46533203-46533222 None:intergenic 25.0%
!! GTTTTTGTCATAATTGTCTT+TGG + chr4_3:46533229-46533248 Msa0643500:intron 25.0%
! TAAACTTTAGATGGAATCTT+AGG + chr4_3:46533253-46533272 Msa0643500:intron 25.0%
! TTTCTAAGTTTACATGAGAA+AGG - chr4_3:46533560-46533579 None:intergenic 25.0%
! CAAAAACTCCAATAAGAAAT+AGG - chr4_3:46533865-46533884 None:intergenic 25.0%
!!! TTTGTATTTTGCTTTTACTC+AGG + chr4_3:46533881-46533900 Msa0643500:intron 25.0%
! TGTAGTAGATTGAATTTGAA+AGG - chr4_3:46534001-46534020 None:intergenic 25.0%
! CAATAAAATTTATCAGGAAC+TGG - chr4_3:46534362-46534381 None:intergenic 25.0%
!!! TCTTTGAATTTTTTCCTTCA+TGG + chr4_3:46534429-46534448 Msa0643500:intron 25.0%
!!! AATTTTTTCCTTCATGGATT+AGG + chr4_3:46534435-46534454 Msa0643500:intron 25.0%
!!! ATTTTTTCCTTCATGGATTA+GGG + chr4_3:46534436-46534455 Msa0643500:intron 25.0%
! AAAATTATAAGCTTGCAACA+TGG - chr4_3:46534636-46534655 None:intergenic 25.0%
!! ATAACTGTGTTATTGTAGAA+GGG - chr4_3:46534735-46534754 None:intergenic 25.0%
!! TATAACTGTGTTATTGTAGA+AGG - chr4_3:46534736-46534755 None:intergenic 25.0%
!! TCTTTTGTTCTTTGTATTCT+TGG + chr4_3:46534860-46534879 Msa0643500:intron 25.0%
!! CTTTTGTTCTTTGTATTCTT+GGG + chr4_3:46534861-46534880 Msa0643500:intron 25.0%
!! TTTTGTTCTTTGTATTCTTG+GGG + chr4_3:46534862-46534881 Msa0643500:intron 25.0%
! ATCTTTGATAAAATAACCAG+AGG - chr4_3:46535009-46535028 None:intergenic 25.0%
!! TTCTCTCTTTTATAGGTTTT+GGG + chr4_3:46535091-46535110 Msa0643500:intron 25.0%
!! TGACTTGAATACTACATTTT+GGG + chr4_3:46535280-46535299 Msa0643500:intron 25.0%
! GTCATATTGCTAATAATTAC+TGG + chr4_3:46535309-46535328 Msa0643500:intron 25.0%
!!! TGGTTGAATTTTCTTTTTTG+AGG + chr4_3:46535435-46535454 Msa0643500:intron 25.0%
!!! TTCTTTTATTTAATGGGTCT+AGG + chr4_3:46535494-46535513 Msa0643500:intron 25.0%
! AAAATACTGCAATGAAGATT+AGG - chr4_3:46535596-46535615 None:intergenic 25.0%
! TTCAAACAGGAATATGATTT+AGG - chr4_3:46535629-46535648 None:intergenic 25.0%
! AAAACAAGAATTTGATGTTG+AGG + chr4_3:46535723-46535742 Msa0643500:CDS 25.0%
! ACAAATTATAATGCAATCAC+AGG - chr4_3:46536008-46536027 None:intergenic 25.0%
! TTCTTATGAACTTTGACTAT+AGG + chr4_3:46536027-46536046 Msa0643500:intron 25.0%
! AAATCGTATGTCTTAGAATT+AGG - chr4_3:46536666-46536685 None:intergenic 25.0%
! ATTTAAAGAAACCAACCAAT+AGG - chr4_3:46536805-46536824 None:intergenic 25.0%
! AAATCGTATGTCTTAGAATT+AGG - chr4_3:46536666-46536685 None:intergenic 25.0%
! TATTACCATTTATAGATGAG+TGG + chr4_3:46537346-46537365 Msa0643500:intron 25.0%
!!! TTTTGATCTTGATGTTTTTG+TGG + chr4_3:46537420-46537439 Msa0643500:CDS 25.0%
!! TTTTTGTGGAAATGAATCAA+CGG + chr4_3:46537434-46537453 Msa0643500:CDS 25.0%
! CATAAGGTTAAAAATCACAA+TGG - chr4_3:46537511-46537530 None:intergenic 25.0%
!!! GACTAATTTATTTGGTTTTC+TGG + chr4_3:46537682-46537701 Msa0643500:intron 25.0%
!! CATATATTAAGAGAGGTTTT+TGG + chr4_3:46538007-46538026 Msa0643500:CDS 25.0%
! ATTGATTATTCTACTACCAA+TGG + chr4_3:46538127-46538146 Msa0643500:CDS 25.0%
!! TTTCCTAATGAAGATGATTT+TGG + chr4_3:46538412-46538431 Msa0643500:CDS 25.0%
! ATTCCAAAATCATCTTCATT+AGG - chr4_3:46538418-46538437 None:intergenic 25.0%
!!! AAGTGTATTTTAACAACAAC+AGG - chr4_3:46539074-46539093 None:intergenic 25.0%
! CAGTAAGTGAATCATAAATA+GGG - chr4_3:46539117-46539136 None:intergenic 25.0%
! TTGATTTCATATTGATCTAG+TGG - chr4_3:46539228-46539247 None:intergenic 25.0%
! CATGAAAGAGTAAAAATCTT+GGG - chr4_3:46539265-46539284 None:intergenic 25.0%
!! CAAGATTTTTACTCTTTCAT+GGG + chr4_3:46539264-46539283 Msa0643500:intron 25.0%
!! AAGATTTTTACTCTTTCATG+GGG + chr4_3:46539265-46539284 Msa0643500:intron 25.0%
!! TTCAAACTCAATTTTTGAAC+AGG - chr4_3:46539306-46539325 None:intergenic 25.0%
! AACAATAATTGTCATGACAT+TGG + chr4_3:46539324-46539343 Msa0643500:intron 25.0%
! ATGACATTGGATGATTAATT+GGG + chr4_3:46539337-46539356 Msa0643500:intron 25.0%
!! AAACTGGTATTTTATGTACT+TGG - chr4_3:46539543-46539562 None:intergenic 25.0%
!!! ACTTAGTTAGAAAGCATTAA+TGG + chr4_3:46540123-46540142 Msa0643500:intron 25.0%
!!! TGATATTTTGAAAAATGTGG+AGG + chr4_3:46540152-46540171 Msa0643500:intron 25.0%
! AATTATCTGATCAAGAACAA+GGG - chr4_3:46540276-46540295 None:intergenic 25.0%
! ATTGAAGAATAAAGGAATGA+TGG - chr4_3:46540736-46540755 None:intergenic 25.0%
! GGTAGATAATTGAAGAATAA+AGG - chr4_3:46540744-46540763 None:intergenic 25.0%
! GTAGTTTAAACTTCCTAATT+TGG + chr4_3:46540809-46540828 Msa0643500:three_prime_UTR 25.0%
! TTTAAACTTCCTAATTTGGT+GGG + chr4_3:46540813-46540832 Msa0643500:three_prime_UTR 25.0%
AAAAAACCAGAAGAAGCAAT+CGG - chr4_3:46531042-46531061 None:intergenic 30.0%
!!! ATTGCTTCTTCTGGTTTTTT+GGG + chr4_3:46531042-46531061 Msa0643500:five_prime_UTR 30.0%
!!! TCAGTTTTTGGTCAATTCTT+AGG + chr4_3:46531365-46531384 Msa0643500:five_prime_UTR 30.0%
!! ATTCTTAGGTTTTGTGGAAA+TGG + chr4_3:46531379-46531398 Msa0643500:exon 30.0%
ATGATGATATACCTTGATAC+CGG - chr4_3:46531414-46531433 None:intergenic 30.0%
!!! TTTTTTAATGGCAAGCTATG+CGG + chr4_3:46531616-46531635 Msa0643500:intron 30.0%
! GGTATATATGCATTTTCGAT+TGG + chr4_3:46531637-46531656 Msa0643500:intron 30.0%
! TATATGCATTTTCGATTGGT+TGG + chr4_3:46531641-46531660 Msa0643500:intron 30.0%
!! TTTCGATTGGTTGGATTTTT+AGG + chr4_3:46531650-46531669 Msa0643500:intron 30.0%
!!! TAGTTTTAGTCATGGTCATT+TGG + chr4_3:46531680-46531699 Msa0643500:intron 30.0%
!! ATATTGTTGGTTCACTGTTT+AGG + chr4_3:46531754-46531773 Msa0643500:intron 30.0%
ATGTTATATTAGTCCCTCAT+CGG + chr4_3:46531969-46531988 Msa0643500:intron 30.0%
TGTAACCATTAACTAGACAT+GGG - chr4_3:46532110-46532129 None:intergenic 30.0%
TTGTAACCATTAACTAGACA+TGG - chr4_3:46532111-46532130 None:intergenic 30.0%
! GTTACAAACCAGTTTTACTA+CGG + chr4_3:46532124-46532143 Msa0643500:intron 30.0%
GTTCGTCATTTCTATGAATT+GGG + chr4_3:46532190-46532209 Msa0643500:intron 30.0%
!! TTTATAGAAGTACCTCCAAT+TGG + chr4_3:46532233-46532252 Msa0643500:intron 30.0%
!! GTCAGTATTGAGTTTTTATG+CGG + chr4_3:46532615-46532634 Msa0643500:intron 30.0%
ATTAAAAAGGAAACAGCACA+TGG - chr4_3:46532860-46532879 None:intergenic 30.0%
CGAAACAGCATATTAAATTC+AGG - chr4_3:46532883-46532902 None:intergenic 30.0%
!! GTGTTTTTAATATGACGTCT+TGG + chr4_3:46532903-46532922 Msa0643500:intron 30.0%
GAGCAAGGTAAAATTATACA+CGG + chr4_3:46533006-46533025 Msa0643500:intron 30.0%
AGCAAGGTAAAATTATACAC+GGG + chr4_3:46533007-46533026 Msa0643500:intron 30.0%
AAGGATAGAATTAGACTCTA+TGG - chr4_3:46533038-46533057 None:intergenic 30.0%
TGTTGAAACTTCCAATACAT+CGG - chr4_3:46533103-46533122 None:intergenic 30.0%
! ACATCTACATTTTCATATGC+AGG - chr4_3:46533129-46533148 None:intergenic 30.0%
GTCTTTGGTTAAACTTTAGA+TGG + chr4_3:46533244-46533263 Msa0643500:intron 30.0%
AGAAAAAAAAATAAGGGCCT+TGG - chr4_3:46533279-46533298 None:intergenic 30.0%
AATTAACTACTCAACAAGGA+GGG - chr4_3:46533323-46533342 None:intergenic 30.0%
CTAGAATTAACTACTCAACA+AGG - chr4_3:46533327-46533346 None:intergenic 30.0%
ATGTATTCACAGAAATGATG+TGG + chr4_3:46533767-46533786 Msa0643500:intron 30.0%
AACTCCAATAAGAAATAGGA+AGG - chr4_3:46533861-46533880 None:intergenic 30.0%
! ATATTTTTCTTCGTTCTCCA+TGG + chr4_3:46534090-46534109 Msa0643500:intron 30.0%
! GCATATAATTTTATGGACCA+TGG - chr4_3:46534110-46534129 None:intergenic 30.0%
AGAAATATTGCATGTACAGT+GGG - chr4_3:46534133-46534152 None:intergenic 30.0%
AAGAAATATTGCATGTACAG+TGG - chr4_3:46534134-46534153 None:intergenic 30.0%
! GTGATCACACATAATTTTCA+TGG + chr4_3:46534199-46534218 Msa0643500:intron 30.0%
!! GTTGCACATTTGATAACTTT+TGG + chr4_3:46534231-46534250 Msa0643500:intron 30.0%
TATTATTCCAGAGAAACCTA+TGG + chr4_3:46534325-46534344 Msa0643500:CDS 30.0%
AAAATTTATCAGGAACTGGT+GGG - chr4_3:46534358-46534377 None:intergenic 30.0%
TAAAATTTATCAGGAACTGG+TGG - chr4_3:46534359-46534378 None:intergenic 30.0%
AAGAAAGAGAACATGACATA+CGG - chr4_3:46534413-46534432 None:intergenic 30.0%
TGTAATGTAGTATTCTCAGT+TGG + chr4_3:46534575-46534594 Msa0643500:intron 30.0%
ACTAAAAATGGGTCACAATA+GGG - chr4_3:46534683-46534702 None:intergenic 30.0%
AACTAAAAATGGGTCACAAT+AGG - chr4_3:46534684-46534703 None:intergenic 30.0%
AAATTTATGGCTCATGAAGT+TGG + chr4_3:46534796-46534815 Msa0643500:intron 30.0%
AAACAATACAAAAGTTCCTC+TGG + chr4_3:46534990-46535009 Msa0643500:intron 30.0%
! TCTGTTGTTCTCTCTTTTAT+AGG + chr4_3:46535084-46535103 Msa0643500:intron 30.0%
! GTTCTCTCTTTTATAGGTTT+TGG + chr4_3:46535090-46535109 Msa0643500:intron 30.0%
!! CTGACTTGAATACTACATTT+TGG + chr4_3:46535279-46535298 Msa0643500:intron 30.0%
! GACTTGAATACTACATTTTG+GGG + chr4_3:46535281-46535300 Msa0643500:intron 30.0%
! ACTTGAATACTACATTTTGG+GGG + chr4_3:46535282-46535301 Msa0643500:intron 30.0%
GTCAAAAGTTAATCCAGTAA+AGG - chr4_3:46535350-46535369 None:intergenic 30.0%
! TGTTGATTGAAATTCTATGG+TGG + chr4_3:46535415-46535434 Msa0643500:intron 30.0%
AATCTTAATGTATTGTCCAG+AGG - chr4_3:46535469-46535488 None:intergenic 30.0%
CAAACGAAAGAAGAAAGATA+TGG - chr4_3:46535781-46535800 None:intergenic 30.0%
TGCAATCACAGGAAAATATT+TGG - chr4_3:46535997-46536016 None:intergenic 30.0%
AATAAATGGCAACTCACAAT+TGG - chr4_3:46536120-46536139 None:intergenic 30.0%
GTCTATAAATATTCTGACTG+CGG + chr4_3:46536153-46536172 Msa0643500:intron 30.0%
TTTCAAACCAATAGGGAATA+GGG - chr4_3:46536500-46536519 None:intergenic 30.0%
ATTTCAAACCAATAGGGAAT+AGG - chr4_3:46536501-46536520 None:intergenic 30.0%
!! TTCCTGATATTGATTCCTAT+TGG + chr4_3:46536787-46536806 Msa0643500:intron 30.0%
AACCAATAGGAATCAATATC+AGG - chr4_3:46536792-46536811 None:intergenic 30.0%
!! TGATATTGATTCCTATTGGT+TGG + chr4_3:46536791-46536810 Msa0643500:intron 30.0%
CTATTTAACGACAAATGTGT+GGG - chr4_3:46537074-46537093 None:intergenic 30.0%
ACTATTTAACGACAAATGTG+TGG - chr4_3:46537075-46537094 None:intergenic 30.0%
GATCCTAAACTTAATTCCAA+AGG + chr4_3:46537112-46537131 Msa0643500:intron 30.0%
!! ACTCCTTTGGAATTAAGTTT+AGG - chr4_3:46537118-46537137 None:intergenic 30.0%
TTGAACCACTCATCTATAAA+TGG - chr4_3:46537354-46537373 None:intergenic 30.0%
AGGTTAAAAATCACAATGGA+GGG - chr4_3:46537507-46537526 None:intergenic 30.0%
AAGGTTAAAAATCACAATGG+AGG - chr4_3:46537508-46537527 None:intergenic 30.0%
!! GAATTTAATTGTTTCTGCAG+TGG + chr4_3:46537533-46537552 Msa0643500:intron 30.0%
!!! GCATAGTTTTTGAGACATAT+AGG - chr4_3:46537565-46537584 None:intergenic 30.0%
ATGTCTCAAAAACTATGCAT+TGG + chr4_3:46537567-46537586 Msa0643500:CDS 30.0%
AAGTGATGCGATTGAAATAA+GGG - chr4_3:46537609-46537628 None:intergenic 30.0%
TCTTAATATATGACCAGAAG+AGG - chr4_3:46537999-46538018 None:intergenic 30.0%
TTCTGGTCATATATTAAGAG+AGG + chr4_3:46538000-46538019 Msa0643500:CDS 30.0%
! ATTGGAATAACAACTTGTTC+AGG - chr4_3:46538037-46538056 None:intergenic 30.0%
!! AATAATGTTGATTTAGCTCG+TGG + chr4_3:46538175-46538194 Msa0643500:CDS 30.0%
TGAAGAAGACAATGACATAT+TGG + chr4_3:46538261-46538280 Msa0643500:CDS 30.0%
! AACCATCTGCAATATCATTT+TGG - chr4_3:46538315-46538334 None:intergenic 30.0%
! AGAATTCAATCCATTTTGAG+TGG - chr4_3:46538857-46538876 None:intergenic 30.0%
CATTTATGAATTAGAAGGGT+CGG - chr4_3:46538944-46538963 None:intergenic 30.0%
TCACACACTAGTTATAACAA+AGG - chr4_3:46538991-46539010 None:intergenic 30.0%
TTATAACTAGTGTGTGAGTT+TGG + chr4_3:46538994-46539013 Msa0643500:intron 30.0%
!! TTAACAACAACAGGTTTTGT+TGG - chr4_3:46539065-46539084 None:intergenic 30.0%
CCAGTAAGTGAATCATAAAT+AGG - chr4_3:46539118-46539137 None:intergenic 30.0%
CCTATTTATGATTCACTTAC+TGG + chr4_3:46539115-46539134 Msa0643500:intron 30.0%
CCATGAAAGAGTAAAAATCT+TGG - chr4_3:46539266-46539285 None:intergenic 30.0%
! CCAAGATTTTTACTCTTTCA+TGG + chr4_3:46539263-46539282 Msa0643500:intron 30.0%
CATGACATTGGATGATTAAT+TGG + chr4_3:46539336-46539355 Msa0643500:intron 30.0%
GGTTCAAAATAACAGATGAT+TGG + chr4_3:46539358-46539377 Msa0643500:intron 30.0%
CAAAATAACAGATGATTGGT+TGG + chr4_3:46539362-46539381 Msa0643500:intron 30.0%
AATAGCGAATCCAATCTATT+TGG + chr4_3:46539397-46539416 Msa0643500:intron 30.0%
AATGTCATCTGATGAATGAT+TGG + chr4_3:46539429-46539448 Msa0643500:intron 30.0%
ATGTCATCTGATGAATGATT+GGG + chr4_3:46539430-46539449 Msa0643500:intron 30.0%
!! AAAACTGATTTGCAGTGAAT+TGG - chr4_3:46539469-46539488 None:intergenic 30.0%
! TGGTATTTTATGTACTTGGA+TGG - chr4_3:46539539-46539558 None:intergenic 30.0%
TTTAACGAACAGGTATAAAC+TGG - chr4_3:46539559-46539578 None:intergenic 30.0%
CATTGAAAATCTAATGTACG+CGG - chr4_3:46539652-46539671 None:intergenic 30.0%
TTGTGGAAAGTTAGTATTCT+CGG + chr4_3:46539813-46539832 Msa0643500:intron 30.0%
! AGAAACTGTAGATTTTGTCT+TGG + chr4_3:46539970-46539989 Msa0643500:intron 30.0%
GGATACACATGTACATATAT+AGG - chr4_3:46540219-46540238 None:intergenic 30.0%
ATTATCTGATCAAGAACAAG+GGG - chr4_3:46540275-46540294 None:intergenic 30.0%
CAATTATCTGATCAAGAACA+AGG - chr4_3:46540277-46540296 None:intergenic 30.0%
! AATCAATAGAAAGGTACAAG+CGG - chr4_3:46540457-46540476 None:intergenic 30.0%
! CTTGTACCTTTCTATTGATT+CGG + chr4_3:46540457-46540476 Msa0643500:CDS 30.0%
! GAACTTGTTTCAAGAACTTT+AGG + chr4_3:46540499-46540518 Msa0643500:three_prime_UTR 30.0%
TAGAAATTGAAAGAAGTTGG+AGG + chr4_3:46540547-46540566 Msa0643500:three_prime_UTR 30.0%
ATGCTTGATATTGAAGTTGA+CGG + chr4_3:46540698-46540717 Msa0643500:three_prime_UTR 30.0%
TATTCTTCAATTATCTACCG+AGG + chr4_3:46540745-46540764 Msa0643500:three_prime_UTR 30.0%
ATTCTTCAATTATCTACCGA+GGG + chr4_3:46540746-46540765 Msa0643500:three_prime_UTR 30.0%
GTTTAAACTTCCTAATTTGG+TGG + chr4_3:46540812-46540831 Msa0643500:three_prime_UTR 30.0%
!! TATCCAATACGGTTAGTTTG+CGG - chr4_3:46531006-46531025 None:intergenic 35.0%
CTATCCACGATTATCCAATA+CGG - chr4_3:46531017-46531036 None:intergenic 35.0%
!!! GATTGCTTCTTCTGGTTTTT+TGG + chr4_3:46531041-46531060 Msa0643500:five_prime_UTR 35.0%
!!! TTCTTCTGGTTTTTTGGGTT+TGG + chr4_3:46531047-46531066 Msa0643500:five_prime_UTR 35.0%
!!! TCTTCTGGTTTTTTGGGTTT+GGG + chr4_3:46531048-46531067 Msa0643500:five_prime_UTR 35.0%
TGATTAGGGTTTGGAGATTA+GGG - chr4_3:46531172-46531191 None:intergenic 35.0%
CCTCCGATTCATTCTTATTA+CGG + chr4_3:46531192-46531211 Msa0643500:five_prime_UTR 35.0%
AGAAGCGAATAATCAACACA+TGG - chr4_3:46531328-46531347 None:intergenic 35.0%
!!! GAGTCTGTTGATTCAGTTTT+TGG + chr4_3:46531353-46531372 Msa0643500:five_prime_UTR 35.0%
! TGGTCAATTCTTAGGTTTTG+TGG + chr4_3:46531373-46531392 Msa0643500:five_prime_UTR 35.0%
!! AGGTTTTGTGGAAATGGATT+TGG + chr4_3:46531385-46531404 Msa0643500:exon 35.0%
TGAATTTATATGGACAGTGG+AGG + chr4_3:46531586-46531605 Msa0643500:intron 35.0%
CCAACAATATATATATCCCC+AGG - chr4_3:46531744-46531763 None:intergenic 35.0%
CCTGGGGATATATATATTGT+TGG + chr4_3:46531741-46531760 Msa0643500:intron 35.0%
AATCTGTCAACAATCAATGC+GGG - chr4_3:46531922-46531941 None:intergenic 35.0%
CAATCTGTCAACAATCAATG+CGG - chr4_3:46531923-46531942 None:intergenic 35.0%
GCGTTTAAACAATAGAGAAG+AGG + chr4_3:46531994-46532013 Msa0643500:intron 35.0%
TTTGCAATAGTGCGCTAATT+TGG - chr4_3:46532071-46532090 None:intergenic 35.0%
TTAGCGCACTATTGCAAAAT+TGG + chr4_3:46532073-46532092 Msa0643500:intron 35.0%
TAGCGCACTATTGCAAAATT+GGG + chr4_3:46532074-46532093 Msa0643500:intron 35.0%
GTTTCCATGCCTAATAAAAC+TGG + chr4_3:46532149-46532168 Msa0643500:intron 35.0%
!!! ACTACCAGTTTTATTAGGCA+TGG - chr4_3:46532156-46532175 None:intergenic 35.0%
GGTTCGTCATTTCTATGAAT+TGG + chr4_3:46532189-46532208 Msa0643500:intron 35.0%
AATTCGTATGTACCAATTGG+AGG - chr4_3:46532248-46532267 None:intergenic 35.0%
TCCAATTGGTACATACGAAT+TGG + chr4_3:46532247-46532266 Msa0643500:intron 35.0%
ACCAATTCGTATGTACCAAT+TGG - chr4_3:46532251-46532270 None:intergenic 35.0%
CCAATACTTGCACAAAAACT+AGG - chr4_3:46532404-46532423 None:intergenic 35.0%
!! CCTAGTTTTTGTGCAAGTAT+TGG + chr4_3:46532401-46532420 Msa0643500:intron 35.0%
GAACGATGTGATTTCATAGT+TGG + chr4_3:46532433-46532452 Msa0643500:intron 35.0%
ATACTTCTGACCTCTCTTAT+AGG + chr4_3:46532663-46532682 Msa0643500:intron 35.0%
TCAGTTAGGACTTTCAAAAC+AGG + chr4_3:46532732-46532751 Msa0643500:CDS 35.0%
CAGTTAGGACTTTCAAAACA+GGG + chr4_3:46532733-46532752 Msa0643500:CDS 35.0%
AATGAAGTCGTTAGCATTCA+AGG - chr4_3:46532830-46532849 None:intergenic 35.0%
! ATATGACGTCTTGGAGTTTT+TGG + chr4_3:46532912-46532931 Msa0643500:intron 35.0%
! AAGCATAGCAGAGAAGTATA+AGG - chr4_3:46533057-46533076 None:intergenic 35.0%
! TTCTCTGCTATGCTTTTACT+GGG + chr4_3:46533062-46533081 Msa0643500:intron 35.0%
GAATTAACTACTCAACAAGG+AGG - chr4_3:46533324-46533343 None:intergenic 35.0%
ATTTACATATGCGAGAGAAG+GGG - chr4_3:46533400-46533419 None:intergenic 35.0%
GATTTACATATGCGAGAGAA+GGG - chr4_3:46533401-46533420 None:intergenic 35.0%
AGATTTACATATGCGAGAGA+AGG - chr4_3:46533402-46533421 None:intergenic 35.0%
TGAAATGAATGTCTACTTCG+TGG + chr4_3:46533444-46533463 Msa0643500:intron 35.0%
GAAATGAATGTCTACTTCGT+GGG + chr4_3:46533445-46533464 Msa0643500:intron 35.0%
GTTTACATGAGAAAGGATGA+AGG - chr4_3:46533553-46533572 None:intergenic 35.0%
GAAACTGAGACAAAAGCAAA+AGG - chr4_3:46533583-46533602 None:intergenic 35.0%
TTGTCTCAGTTTCCAGAATA+TGG + chr4_3:46533590-46533609 Msa0643500:intron 35.0%
TGTCTCAGTTTCCAGAATAT+GGG + chr4_3:46533591-46533610 Msa0643500:intron 35.0%
! AATTGGTGGATGACACATAT+AGG + chr4_3:46533650-46533669 Msa0643500:CDS 35.0%
TATTCTTTAACCCATTCCCT+TGG + chr4_3:46533835-46533854 Msa0643500:intron 35.0%
ATAAGAAATAGGAAGGCCAA+GGG - chr4_3:46533854-46533873 None:intergenic 35.0%
AATAAGAAATAGGAAGGCCA+AGG - chr4_3:46533855-46533874 None:intergenic 35.0%
! TTGGCCTTCCTATTTCTTAT+TGG + chr4_3:46533854-46533873 Msa0643500:intron 35.0%
ACTCAGGAAAATGCAGATAT+CGG + chr4_3:46533897-46533916 Msa0643500:intron 35.0%
GTCAGATAGTAGTAATGTGA+AGG + chr4_3:46533954-46533973 Msa0643500:CDS 35.0%
! CAGTGGGGCATATAATTTTA+TGG - chr4_3:46534117-46534136 None:intergenic 35.0%
GAAATATTGCATGTACAGTG+GGG - chr4_3:46534132-46534151 None:intergenic 35.0%
AGAAAGAGAACATGACATAC+GGG - chr4_3:46534412-46534431 None:intergenic 35.0%
AAATTTGCCCTAATCCATGA+AGG - chr4_3:46534446-46534465 None:intergenic 35.0%
!!! ACTGAAACTGTTTTAGTGTG+AGG + chr4_3:46534496-46534515 Msa0643500:intron 35.0%
!!! TTGTGACCCATTTTTAGTTG+TGG + chr4_3:46534685-46534704 Msa0643500:intron 35.0%
CCAACTCCACAACTAAAAAT+GGG - chr4_3:46534694-46534713 None:intergenic 35.0%
ACCAACTCCACAACTAAAAA+TGG - chr4_3:46534695-46534714 None:intergenic 35.0%
TCCTTTGTTACCTGTAAAGT+TGG + chr4_3:46535127-46535146 Msa0643500:CDS 35.0%
!! AATACTACATTTTGGGGGTT+GGG + chr4_3:46535287-46535306 Msa0643500:intron 35.0%
GTTAGTGCAAATTCCTTTAC+TGG + chr4_3:46535334-46535353 Msa0643500:intron 35.0%
!!! TTTTGAGGTAGAATTACCTC+TGG + chr4_3:46535450-46535469 Msa0643500:intron 35.0%
AGCAGATAATTATTCGCACA+CGG - chr4_3:46535560-46535579 None:intergenic 35.0%
! CTTCATTGCAGTATTTTGCT+TGG + chr4_3:46535599-46535618 Msa0643500:intron 35.0%
! ATTGCAGTATTTTGCTTGGT+TGG + chr4_3:46535603-46535622 Msa0643500:intron 35.0%
! TGGTACTGAACAATTCAAAC+AGG - chr4_3:46535642-46535661 None:intergenic 35.0%
CAAGAATTTGATGTTGAGGT+TGG + chr4_3:46535727-46535746 Msa0643500:intron 35.0%
! ATTTGATGTTGAGGTTGGTT+TGG + chr4_3:46535732-46535751 Msa0643500:intron 35.0%
! TTTGGATTTTCAGTGCTTGT+AGG + chr4_3:46535750-46535769 Msa0643500:intron 35.0%
TGAAAAATTACGTGTAGGCT+TGG + chr4_3:46535808-46535827 Msa0643500:intron 35.0%
TATACAGACCTAGCAGTTAA+TGG + chr4_3:46535879-46535898 Msa0643500:CDS 35.0%
!! TGAAAGTACCATTAACTGCT+AGG - chr4_3:46535890-46535909 None:intergenic 35.0%
GGTCTATTAGTTGTTCGAAT+AGG - chr4_3:46536057-46536076 None:intergenic 35.0%
ATTCGAACAACTAATAGACC+TGG + chr4_3:46536057-46536076 Msa0643500:CDS 35.0%
ACTTATTGTTCAGTACCACA+AGG - chr4_3:46536424-46536443 None:intergenic 35.0%
TATTGATCCCTATTCCCTAT+TGG + chr4_3:46536490-46536509 Msa0643500:intron 35.0%
TTTAGTAGAAGCAACACTTG+AGG - chr4_3:46536615-46536634 None:intergenic 35.0%
TTTCAGACTGACATTGTACA+GGG - chr4_3:46536767-46536786 None:intergenic 35.0%
ATTTCAGACTGACATTGTAC+AGG - chr4_3:46536768-46536787 None:intergenic 35.0%
TTAATTCCAAAGGAGTCTGA+CGG + chr4_3:46537122-46537141 Msa0643500:CDS 35.0%
AGAAACGAAAAAAGCCTTAC+CGG - chr4_3:46537275-46537294 None:intergenic 35.0%
AATGCAAGGTTTGAATCTTC+CGG - chr4_3:46537389-46537408 None:intergenic 35.0%
ATTCAAACCTTGCATTCACA+TGG + chr4_3:46537393-46537412 Msa0643500:CDS 35.0%
TTCAAACCTTGCATTCACAT+GGG + chr4_3:46537394-46537413 Msa0643500:CDS 35.0%
AATGAATCAACGGTCAAGAA+AGG + chr4_3:46537444-46537463 Msa0643500:CDS 35.0%
GGTTAAAAATCACAATGGAG+GGG - chr4_3:46537506-46537525 None:intergenic 35.0%
GAAGTGATGCGATTGAAATA+AGG - chr4_3:46537610-46537629 None:intergenic 35.0%
TTTCAATCGCATCACTTCTA+TGG + chr4_3:46537612-46537631 Msa0643500:CDS 35.0%
CTGGTACAGATGATTAATTG+CGG + chr4_3:46537701-46537720 Msa0643500:intron 35.0%
AAAGTGAACGTCTGGATTTA+GGG + chr4_3:46537786-46537805 Msa0643500:CDS 35.0%
AACACTGAAGCAAGTAAAAC+AGG + chr4_3:46537880-46537899 Msa0643500:CDS 35.0%
!! AAACAGGAAGGTTTTTCAGA+TGG + chr4_3:46537896-46537915 Msa0643500:CDS 35.0%
! CTGGTTTAAAACTTGGCATT+AGG + chr4_3:46537924-46537943 Msa0643500:CDS 35.0%
! GTTTAAAACTTGGCATTAGG+AGG + chr4_3:46537927-46537946 Msa0643500:CDS 35.0%
TACTACCAATGGAATTGAGA+TGG + chr4_3:46538138-46538157 Msa0643500:CDS 35.0%
AGAATCCATCTCAATTCCAT+TGG - chr4_3:46538146-46538165 None:intergenic 35.0%
!! TGGTTGTTATTTGCAATTGG+AGG - chr4_3:46538292-46538311 None:intergenic 35.0%
!! TGGTGGTTGTTATTTGCAAT+TGG - chr4_3:46538295-46538314 None:intergenic 35.0%
! CATCTGCAATATCATTTTGG+TGG - chr4_3:46538312-46538331 None:intergenic 35.0%
CACCAAAATGATATTGCAGA+TGG + chr4_3:46538310-46538329 Msa0643500:CDS 35.0%
!!! ATTTTGGAATATCTTCCCTG+TGG + chr4_3:46538428-46538447 Msa0643500:CDS 35.0%
AGTGATGAGGTGCAATTAAT+AGG - chr4_3:46538547-46538566 None:intergenic 35.0%
GATCAAGCAAATGTCTCTAA+TGG + chr4_3:46538763-46538782 Msa0643500:CDS 35.0%
CAAAGGACTAAAAATGCAAG+CGG - chr4_3:46538974-46538993 None:intergenic 35.0%
AGTTTGGTCCTTCAATTAGA+AGG + chr4_3:46539010-46539029 Msa0643500:intron 35.0%
GTTTGGTCCTTCAATTAGAA+GGG + chr4_3:46539011-46539030 Msa0643500:intron 35.0%
TTTGGTCCTTCAATTAGAAG+GGG + chr4_3:46539012-46539031 Msa0643500:intron 35.0%
CATAATCCCCTTCTAATTGA+AGG - chr4_3:46539021-46539040 None:intergenic 35.0%
! TAACAGATGATTGGTTGGAT+TGG + chr4_3:46539367-46539386 Msa0643500:intron 35.0%
! AACAGATGATTGGTTGGATT+GGG + chr4_3:46539368-46539387 Msa0643500:intron 35.0%
AAGGTAGCAATTTAACGAAC+AGG - chr4_3:46539569-46539588 None:intergenic 35.0%
! CGCGTACATTAGATTTTCAA+TGG + chr4_3:46539650-46539669 Msa0643500:intron 35.0%
CTGTGAGATGATCTTATGAA+AGG - chr4_3:46539682-46539701 None:intergenic 35.0%
!! TTGCAACTTGGTGCTATAAA+AGG - chr4_3:46539709-46539728 None:intergenic 35.0%
CCAGAAACAGTTATTGGAAT+TGG - chr4_3:46539779-46539798 None:intergenic 35.0%
CCAATTCCAATAACTGTTTC+TGG + chr4_3:46539776-46539795 Msa0643500:intron 35.0%
CCTAAACCAGAAACAGTTAT+TGG - chr4_3:46539785-46539804 None:intergenic 35.0%
!! CCAATAACTGTTTCTGGTTT+AGG + chr4_3:46539782-46539801 Msa0643500:intron 35.0%
!! TGGTTTAGGTCGTTTTATTG+TGG + chr4_3:46539796-46539815 Msa0643500:intron 35.0%
!! GTATTCTCGGAATTTTGAAG+AGG + chr4_3:46539826-46539845 Msa0643500:intron 35.0%
! AAAAGGTGTAAGAAAGTTGC+CGG + chr4_3:46539909-46539928 Msa0643500:intron 35.0%
! ATCAATAGAAAGGTACAAGC+GGG - chr4_3:46540456-46540475 None:intergenic 35.0%
!! CCTTTCTATTGATTCGGAAT+CGG + chr4_3:46540463-46540482 Msa0643500:CDS 35.0%
!! TTGATTCGGAATCGGAATAA+AGG + chr4_3:46540471-46540490 Msa0643500:CDS 35.0%
!!! AAAGAAGTTGGAGGCATTTT+TGG + chr4_3:46540556-46540575 Msa0643500:three_prime_UTR 35.0%
!!! CATTTTTGGTCCTCATAATG+TGG + chr4_3:46540570-46540589 Msa0643500:three_prime_UTR 35.0%
ATACATACTGCCACATTATG+AGG - chr4_3:46540583-46540602 None:intergenic 35.0%
TAATGTGGCAGTATGTATTG+AGG + chr4_3:46540585-46540604 Msa0643500:three_prime_UTR 35.0%
CTCTGGTGGAAGATATAAAT+TGG + chr4_3:46540611-46540630 Msa0643500:three_prime_UTR 35.0%
CAATATCATTTGCCAAAGAG+GGG - chr4_3:46540655-46540674 None:intergenic 35.0%
CCAATATCATTTGCCAAAGA+GGG - chr4_3:46540656-46540675 None:intergenic 35.0%
TGGAGAAACAAGAATCTTTG+CGG - chr4_3:46540679-46540698 None:intergenic 35.0%
GTCAACTTCAATATCAAGCA+TGG - chr4_3:46540699-46540718 None:intergenic 35.0%
TGCTTGATATTGAAGTTGAC+GGG + chr4_3:46540699-46540718 Msa0643500:three_prime_UTR 35.0%
!!! TGCTGGTTTTACTGTATAGT+TGG + chr4_3:46540774-46540793 Msa0643500:three_prime_UTR 35.0%
GTATAGTTGGTCATTCAATC+TGG + chr4_3:46540787-46540806 Msa0643500:three_prime_UTR 35.0%
GAAACTTTACCCACCAAATT+AGG - chr4_3:46540825-46540844 None:intergenic 35.0%
! ACCTGTAAATGTTTAGCCTT+CGG + chr4_3:46540896-46540915 Msa0643500:three_prime_UTR 35.0%
AATTCTCTTGTTGAATCCGA+AGG - chr4_3:46540915-46540934 None:intergenic 35.0%
! TCAATTCTAGACGCACTTTT+GGG - chr4_3:46541030-46541049 None:intergenic 35.0%
! TTCAATTCTAGACGCACTTT+TGG - chr4_3:46541031-46541050 None:intergenic 35.0%
CTAACCGTATTGGATAATCG+TGG + chr4_3:46531010-46531029 Msa0643500:five_prime_UTR 40.0%
CGTATTGGATAATCGTGGAT+AGG + chr4_3:46531015-46531034 Msa0643500:five_prime_UTR 40.0%
!!! TGGTTTTTTGGGTTTGGGTT+TGG + chr4_3:46531053-46531072 Msa0643500:five_prime_UTR 40.0%
GTGATTAGGGTTTGGAGATT+AGG - chr4_3:46531173-46531192 None:intergenic 40.0%
GAATGAATCGGAGGTGATTA+GGG - chr4_3:46531186-46531205 None:intergenic 40.0%
AGAATGAATCGGAGGTGATT+AGG - chr4_3:46531187-46531206 None:intergenic 40.0%
CCGTAATAAGAATGAATCGG+AGG - chr4_3:46531195-46531214 None:intergenic 40.0%
! GATCAGATTGGTTACTACTG+CGG + chr4_3:46531297-46531316 Msa0643500:intron 40.0%
ATTTATATGGACAGTGGAGG+AGG + chr4_3:46531589-46531608 Msa0643500:intron 40.0%
!!! GGAGGAGGAGGTTTTTTTAA+TGG + chr4_3:46531604-46531623 Msa0643500:intron 40.0%
! TTGCAATTCGCTTTGCTATG+TGG + chr4_3:46531704-46531723 Msa0643500:intron 40.0%
! ATTCGCTTTGCTATGTGGTA+CGG + chr4_3:46531709-46531728 Msa0643500:intron 40.0%
TGTTTAAACGCTTCCGATGA+GGG - chr4_3:46531985-46532004 None:intergenic 40.0%
TTGTTTAAACGCTTCCGATG+AGG - chr4_3:46531986-46532005 None:intergenic 40.0%
TCACACAGTTCATTGTACCA+TGG + chr4_3:46532042-46532061 Msa0643500:intron 40.0%
CTATTGCAAAATTGGGTGTG+CGG + chr4_3:46532081-46532100 Msa0643500:intron 40.0%
TATTGCAAAATTGGGTGTGC+GGG + chr4_3:46532082-46532101 Msa0643500:intron 40.0%
GGAAACAACCGTAGTAAAAC+TGG - chr4_3:46532135-46532154 None:intergenic 40.0%
!! AAGCATGGAAGCATTGTCTA+AGG + chr4_3:46532319-46532338 Msa0643500:intron 40.0%
TTTCCGTATCAAAGAGCTCA+AGG + chr4_3:46532699-46532718 Msa0643500:CDS 40.0%
CATCCTTGAGCTCTTTGATA+CGG - chr4_3:46532705-46532724 None:intergenic 40.0%
TTCAAAACAGGGAAAGAAGC+AGG + chr4_3:46532744-46532763 Msa0643500:CDS 40.0%
ATCCTACAGAAGACAAAGCA+CGG - chr4_3:46532953-46532972 None:intergenic 40.0%
! CTTCTCTGCTATGCTTTTAC+TGG + chr4_3:46533061-46533080 Msa0643500:intron 40.0%
! TCTCTGCTATGCTTTTACTG+GGG + chr4_3:46533063-46533082 Msa0643500:intron 40.0%
TTAGATGGAATCTTAGGCCA+AGG + chr4_3:46533259-46533278 Msa0643500:intron 40.0%
! TTTTCTCTCTCTTACCCCAA+CGG + chr4_3:46533293-46533312 Msa0643500:intron 40.0%
CTAGCTGTTTGCTTTCATAC+AGG + chr4_3:46533343-46533362 Msa0643500:intron 40.0%
TTTACATATGCGAGAGAAGG+GGG - chr4_3:46533399-46533418 None:intergenic 40.0%
AGAAAGGATGAAGGAACACA+AGG - chr4_3:46533544-46533563 None:intergenic 40.0%
ATTCTTCTTGGCCCATATTC+TGG - chr4_3:46533605-46533624 None:intergenic 40.0%
TTTCCCAACAGCATTCTTCT+TGG - chr4_3:46533617-46533636 None:intergenic 40.0%
TGATGTGGTACTATGCCATT+AGG + chr4_3:46533782-46533801 Msa0643500:intron 40.0%
CTCAGGAAAATGCAGATATC+GGG + chr4_3:46533898-46533917 Msa0643500:intron 40.0%
ATTCCAGAGAAACCTATGGA+AGG + chr4_3:46534329-46534348 Msa0643500:CDS 40.0%
!!! CCCATTTTTAGTTGTGGAGT+TGG + chr4_3:46534691-46534710 Msa0643500:intron 40.0%
TTGTATTCTTGGGGCCTATT+TGG + chr4_3:46534871-46534890 Msa0643500:intron 40.0%
TTGAAAGCCGCAAACCAAAT+AGG - chr4_3:46534888-46534907 None:intergenic 40.0%
GCCAACTTTACAGGTAACAA+AGG - chr4_3:46535131-46535150 None:intergenic 40.0%
!! GAATACTACATTTTGGGGGT+TGG + chr4_3:46535286-46535305 Msa0643500:intron 40.0%
CGGTCATTTGATTGTGTCTT+GGG - chr4_3:46535540-46535559 None:intergenic 40.0%
ACGGTCATTTGATTGTGTCT+TGG - chr4_3:46535541-46535560 None:intergenic 40.0%
AGGTTCCATTCAGGATTCAA+TGG + chr4_3:46535850-46535869 Msa0643500:CDS 40.0%
! GATGCTCGCATTTTCTGTTT+AGG + chr4_3:46536296-46536315 Msa0643500:CDS 40.0%
ATTGTTCAGTACCACAAGGA+GGG - chr4_3:46536420-46536439 None:intergenic 40.0%
TATTGTTCAGTACCACAAGG+AGG - chr4_3:46536421-46536440 None:intergenic 40.0%
TTTCAGACTGACACTGTACA+GGG - chr4_3:46536463-46536482 None:intergenic 40.0%
ATTTCAGACTGACACTGTAC+AGG - chr4_3:46536464-46536483 None:intergenic 40.0%
AGGGAATAGGGATCAATATC+AGG - chr4_3:46536488-46536507 None:intergenic 40.0%
TTTGAAGAACACCTGACTGT+CGG + chr4_3:46536569-46536588 Msa0643500:intron 40.0%
TTTGAATAACACCCGACTGT+CGG + chr4_3:46536880-46536899 Msa0643500:intron 40.0%
AAATGTGTGGGAGTAATGCA+AGG - chr4_3:46537062-46537081 None:intergenic 40.0%
GGTTCAAGAATGAAGATTGC+CGG + chr4_3:46537367-46537386 Msa0643500:CDS 40.0%
AAACAACCCATGTGAATGCA+AGG - chr4_3:46537403-46537422 None:intergenic 40.0%
TGAAGATGTTACAGAGGTTG+AGG + chr4_3:46537724-46537743 Msa0643500:CDS 40.0%
AAAGAGTGAAAGTGAACGTC+TGG + chr4_3:46537778-46537797 Msa0643500:CDS 40.0%
GAAAGTGAACGTCTGGATTT+AGG + chr4_3:46537785-46537804 Msa0643500:CDS 40.0%
ATTTAGGGATTCTTGGCCAA+TGG + chr4_3:46537801-46537820 Msa0643500:CDS 40.0%
ATCCATTAGGAAGATGCCAT+TGG - chr4_3:46537820-46537839 None:intergenic 40.0%
GAAGTACAAAGGGATCCATT+AGG - chr4_3:46537833-46537852 None:intergenic 40.0%
! TCCAGCAGTAGAAGTACAAA+GGG - chr4_3:46537843-46537862 None:intergenic 40.0%
CTGAAGCAAGTAAAACAGGA+AGG + chr4_3:46537884-46537903 Msa0643500:CDS 40.0%
!!! ATGCCAAGTTTTAAACCAGC+AGG - chr4_3:46537923-46537942 None:intergenic 40.0%
!! AGAAGAGGTGTTTGTTGTCT+CGG - chr4_3:46537984-46538003 None:intergenic 40.0%
GATTCTGATCTTCAGCGTAT+GGG - chr4_3:46538366-46538385 None:intergenic 40.0%
AGATTCTGATCTTCAGCGTA+TGG - chr4_3:46538367-46538386 None:intergenic 40.0%
TACGCTGAAGATCAGAATCT+CGG + chr4_3:46538367-46538386 Msa0643500:CDS 40.0%
CAAATGAACCAATGCATCAG+AGG - chr4_3:46538515-46538534 None:intergenic 40.0%
AATTGCACCTCATCACTGAA+CGG + chr4_3:46538550-46538569 Msa0643500:CDS 40.0%
ATCACTGAACGGTTATGCAT+TGG + chr4_3:46538561-46538580 Msa0643500:CDS 40.0%
! GGGAGAAAAATCTGAAGTGA+GGG - chr4_3:46538703-46538722 None:intergenic 40.0%
ATGGTGTTTCCACTGAAGAT+TGG + chr4_3:46538782-46538801 Msa0643500:CDS 40.0%
AGACAATGGCGCAAATACTT+TGG + chr4_3:46538897-46538916 Msa0643500:CDS 40.0%
! GCAAATACTTTGGCTGATTC+TGG + chr4_3:46538907-46538926 Msa0643500:CDS 40.0%
!!! AACAACAGGTTTTGTTGGCA+TGG - chr4_3:46539060-46539079 None:intergenic 40.0%
TTTCATGGGGCCATCAATTA+GGG + chr4_3:46539278-46539297 Msa0643500:intron 40.0%
! AAAGGTGTAAGAAAGTTGCC+GGG + chr4_3:46539910-46539929 Msa0643500:intron 40.0%
AGTGCTCAATACAAGAAACC+CGG - chr4_3:46539931-46539950 None:intergenic 40.0%
! ATTGAGCACTGCTATGCAAA+TGG + chr4_3:46539941-46539960 Msa0643500:intron 40.0%
GAAGACTAAACACAGCAACA+TGG - chr4_3:46540016-46540035 None:intergenic 40.0%
GCACTAAGATTCATATGGTG+AGG - chr4_3:46540038-46540057 None:intergenic 40.0%
TGCTCGCACTAAGATTCATA+TGG - chr4_3:46540043-46540062 None:intergenic 40.0%
CTCACCTTCTGCATTGTTTA+TGG + chr4_3:46540247-46540266 Msa0643500:intron 40.0%
GGAACCATAAACAATGCAGA+AGG - chr4_3:46540254-46540273 None:intergenic 40.0%
AGAAGCTGCACAAGAAGATA+TGG - chr4_3:46540336-46540355 None:intergenic 40.0%
! TTTTGGCGAGGAAATGTGAA+AGG - chr4_3:46540419-46540438 None:intergenic 40.0%
! TCAATAGAAAGGTACAAGCG+GGG - chr4_3:46540455-46540474 None:intergenic 40.0%
CCGATTCCGAATCAATAGAA+AGG - chr4_3:46540466-46540485 None:intergenic 40.0%
! AGTATGTATTGAGGCATCTC+TGG + chr4_3:46540594-46540613 Msa0643500:three_prime_UTR 40.0%
CCCTCTTTGGCAAATGATAT+TGG + chr4_3:46540653-46540672 Msa0643500:three_prime_UTR 40.0%
GCCAATATCATTTGCCAAAG+AGG - chr4_3:46540657-46540676 None:intergenic 40.0%
!! ATATTGAAGTTGACGGGTTG+TGG + chr4_3:46540705-46540724 Msa0643500:three_prime_UTR 40.0%
TAAAACCAGCACTATACCCT+CGG - chr4_3:46540765-46540784 None:intergenic 40.0%
TCCGAAGGCTAAACATTTAC+AGG - chr4_3:46540900-46540919 None:intergenic 40.0%
!! CTTGTGCCCATTTTTACATC+TGG + chr4_3:46540974-46540993 Msa0643500:three_prime_UTR 40.0%
AACACGTCCGGGTTAAGTTT+CGG - chr4_3:46530982-46531001 None:intergenic 45.0%
TTGCCGCAAACTAACCGTAT+TGG + chr4_3:46531000-46531019 Msa0643500:five_prime_UTR 45.0%
ATAGGTCCGATTGCTTCTTC+TGG + chr4_3:46531033-46531052 Msa0643500:five_prime_UTR 45.0%
! GTTTGTTGAAATCACGCACG+CGG - chr4_3:46531150-46531169 None:intergenic 45.0%
AATCGGAGGTGATTAGGGTT+TGG - chr4_3:46531181-46531200 None:intergenic 45.0%
! GTGGAAATGGATTTGGTAGC+CGG + chr4_3:46531392-46531411 Msa0643500:exon 45.0%
ATGCCTTCGATCAGTAGTGT+CGG + chr4_3:46531529-46531548 Msa0643500:intron 45.0%
! TTCGCTTTGCTATGTGGTAC+GGG + chr4_3:46531710-46531729 Msa0643500:intron 45.0%
! TGGTTCACTGTTTAGGTTCG+TGG + chr4_3:46531761-46531780 Msa0643500:intron 45.0%
GGGTTCCCATGTCTAGTTAA+TGG + chr4_3:46532102-46532121 Msa0643500:intron 45.0%
!! GAATTGGTTCGCAGTTCTCA+TGG + chr4_3:46532263-46532282 Msa0643500:intron 45.0%
!! AAGGATGTGCTGACTCAGTT+AGG + chr4_3:46532718-46532737 Msa0643500:CDS 45.0%
TCCTACAGAAGACAAAGCAC+GGG - chr4_3:46532952-46532971 None:intergenic 45.0%
TTCTGTAGGATCTCGTCGAT+CGG + chr4_3:46532962-46532981 Msa0643500:intron 45.0%
TCCATTCTCTCAGATGAGCA+AGG + chr4_3:46532991-46533010 Msa0643500:CDS 45.0%
ACCTTGCTCATCTGAGAGAA+TGG - chr4_3:46532995-46533014 None:intergenic 45.0%
AACAAGGAGGGTTTACCGTT+GGG - chr4_3:46533311-46533330 None:intergenic 45.0%
AGGGGGAAATGGATCAAACT+TGG - chr4_3:46533382-46533401 None:intergenic 45.0%
GAAAGAGCAGGTGGCAAAAT+TGG + chr4_3:46533633-46533652 Msa0643500:CDS 45.0%
CAGCATCAACAATAGCTGCT+AGG - chr4_3:46533688-46533707 None:intergenic 45.0%
TATGCCATTAGGCCTGGTTT+GGG + chr4_3:46533793-46533812 Msa0643500:intron 45.0%
CAGCATAATCAACCCAAACC+AGG - chr4_3:46533808-46533827 None:intergenic 45.0%
AATAGGAAGGCCAAGGGAAT+GGG - chr4_3:46533848-46533867 None:intergenic 45.0%
AAATAGGAAGGCCAAGGGAA+TGG - chr4_3:46533849-46533868 None:intergenic 45.0%
AGCCACTGATCTAGCATCAA+AGG + chr4_3:46533921-46533940 Msa0643500:CDS 45.0%
GCCACTGATCTAGCATCAAA+GGG + chr4_3:46533922-46533941 Msa0643500:CDS 45.0%
ACCCTTTGATGCTAGATCAG+TGG - chr4_3:46533926-46533945 None:intergenic 45.0%
TGATCTAGCATCAAAGGGTC+AGG + chr4_3:46533927-46533946 Msa0643500:CDS 45.0%
ACAAAGATTCGCTGTCTCTG+TGG + chr4_3:46534024-46534043 Msa0643500:CDS 45.0%
! TGTGGAAGTACGTTGGAAAC+AGG + chr4_3:46534042-46534061 Msa0643500:CDS 45.0%
! GTGGAAGTACGTTGGAAACA+GGG + chr4_3:46534043-46534062 Msa0643500:CDS 45.0%
! TGGAAGTACGTTGGAAACAG+GGG + chr4_3:46534044-46534063 Msa0643500:CDS 45.0%
GGAAACAGGGGATTTGATCA+AGG + chr4_3:46534056-46534075 Msa0643500:CDS 45.0%
ATGATGCAAGATGCCAAGTG+TGG + chr4_3:46534285-46534304 Msa0643500:CDS 45.0%
AACTGATGTGTTGCCACACT+TGG - chr4_3:46534301-46534320 None:intergenic 45.0%
ATGCCTTCCATAGGTTTCTC+TGG - chr4_3:46534335-46534354 None:intergenic 45.0%
TGTGAGGCTGTTATCGTTGA+AGG + chr4_3:46534512-46534531 Msa0643500:intron 45.0%
! TCTCAGTTGGTGTAGTGAAC+TGG + chr4_3:46534588-46534607 Msa0643500:intron 45.0%
! ATCAGTCGGAATACTGGTTG+TGG - chr4_3:46535153-46535172 None:intergenic 45.0%
ACAACCAGTATTCCGACTGA+TGG + chr4_3:46535152-46535171 Msa0643500:CDS 45.0%
CAACCAGTATTCCGACTGAT+GGG + chr4_3:46535153-46535172 Msa0643500:CDS 45.0%
CTACTCTGCAGAGACTGTAA+TGG + chr4_3:46535369-46535388 Msa0643500:intron 45.0%
TCAACTCACAAGAGCAGACA+AGG + chr4_3:46535690-46535709 Msa0643500:CDS 45.0%
GTGTATGCTTCTGAACGACA+AGG + chr4_3:46535830-46535849 Msa0643500:CDS 45.0%
TGAACGACAAGGTTCCATTC+AGG + chr4_3:46535841-46535860 Msa0643500:CDS 45.0%
TGTGGCCATTGAATCCTGAA+TGG - chr4_3:46535858-46535877 None:intergenic 45.0%
ACTGCTAGGTCTGTATACTG+TGG - chr4_3:46535876-46535895 None:intergenic 45.0%
TCTCAGTTGCTTGGAGCTAA+CGG + chr4_3:46536081-46536100 Msa0643500:CDS 45.0%
TATGCGGCGTGATCTGAAAA+AGG - chr4_3:46536238-46536257 None:intergenic 45.0%
ATCACGCCGCATACAAAAGA+CGG + chr4_3:46536245-46536264 Msa0643500:CDS 45.0%
GCGAGCATCACATACTGTTA+AGG - chr4_3:46536285-46536304 None:intergenic 45.0%
TAGGCGTTCGAATTGTCAGA+AGG + chr4_3:46536315-46536334 Msa0643500:CDS 45.0%
ATTCCTTTAGTCCCTCCTTG+TGG + chr4_3:46536406-46536425 Msa0643500:intron 45.0%
!! CGTGCAAGAGCATCTTCAAA+AGG - chr4_3:46537152-46537171 None:intergenic 45.0%
! TGCTGATAGCGACAGTGATT+TGG + chr4_3:46537211-46537230 Msa0643500:CDS 45.0%
! TAGCGACAGTGATTTGGAAG+TGG + chr4_3:46537217-46537236 Msa0643500:CDS 45.0%
CAGTATAAGCCTTCGTTGTC+CGG + chr4_3:46537253-46537272 Msa0643500:CDS 45.0%
TTGCGGTGAAGATGTTACAG+AGG + chr4_3:46537718-46537737 Msa0643500:CDS 45.0%
CGTCTGGATTTAGGGATTCT+TGG + chr4_3:46537794-46537813 Msa0643500:CDS 45.0%
TCCCTTTGTACTTCTACTGC+TGG + chr4_3:46537839-46537858 Msa0643500:CDS 45.0%
! CTCCAGCAGTAGAAGTACAA+AGG - chr4_3:46537844-46537863 None:intergenic 45.0%
!! GGACCTGCTGGTTTAAAACT+TGG + chr4_3:46537917-46537936 Msa0643500:CDS 45.0%
GCATTAGGAGGAATCGCAAT+GGG + chr4_3:46537939-46537958 Msa0643500:CDS 45.0%
GAGGAATCGCAATGGGAATT+GGG + chr4_3:46537946-46537965 Msa0643500:CDS 45.0%
!! GAAGAGGTGTTTGTTGTCTC+GGG - chr4_3:46537983-46538002 None:intergenic 45.0%
GAGACAACAAACACCTCTTC+TGG + chr4_3:46537983-46538002 Msa0643500:CDS 45.0%
GTTATTCCAATGAGCAGCAG+TGG + chr4_3:46538046-46538065 Msa0643500:CDS 45.0%
TGATGATCCCAGTGTTAACC+AGG + chr4_3:46538090-46538109 Msa0643500:CDS 45.0%
GATGATCCCAGTGTTAACCA+GGG + chr4_3:46538091-46538110 Msa0643500:CDS 45.0%
CATAACACATCTGCTCAGGT+GGG + chr4_3:46538208-46538227 Msa0643500:CDS 45.0%
TATGGGTCAACAATTCCAGG+AGG - chr4_3:46538349-46538368 None:intergenic 45.0%
GGTCCAGGATTCCAATTGTT+CGG + chr4_3:46538475-46538494 Msa0643500:CDS 45.0%
GAACCGAACAATTGGAATCC+TGG - chr4_3:46538481-46538500 None:intergenic 45.0%
CTGCATCAGAACCGAACAAT+TGG - chr4_3:46538489-46538508 None:intergenic 45.0%
! ATTGTTCGGTTCTGATGCAG+AGG + chr4_3:46538489-46538508 Msa0643500:CDS 45.0%
TGCATAACCGTTCAGTGATG+AGG - chr4_3:46538560-46538579 None:intergenic 45.0%
CTCTTACAAGATTCCTCTGC+TGG + chr4_3:46538613-46538632 Msa0643500:CDS 45.0%
TACAAGATTCCTCTGCTGGA+CGG + chr4_3:46538617-46538636 Msa0643500:CDS 45.0%
!! CGGACAGATGCTGACTTAAA+CGG + chr4_3:46538637-46538656 Msa0643500:CDS 45.0%
!! ACAGATGCTGACTTAAACGG+TGG + chr4_3:46538640-46538659 Msa0643500:CDS 45.0%
!! TGCTGACTTAAACGGTGGTT+TGG + chr4_3:46538645-46538664 Msa0643500:CDS 45.0%
!! TGGTTTGGTTGACAACCCAT+TGG + chr4_3:46538660-46538679 Msa0643500:CDS 45.0%
CATCTCCAGCAAATGCCAAT+GGG - chr4_3:46538678-46538697 None:intergenic 45.0%
TCATCTCCAGCAAATGCCAA+TGG - chr4_3:46538679-46538698 None:intergenic 45.0%
! GGGGAGAAAAATCTGAAGTG+AGG - chr4_3:46538704-46538723 None:intergenic 45.0%
AAGGGATGTCCAATCTTCAG+TGG - chr4_3:46538794-46538813 None:intergenic 45.0%
GATTGGACATCCCTTACTCT+CGG + chr4_3:46538799-46538818 Msa0643500:CDS 45.0%
GGTGATGCTTCCACTCAAAA+TGG + chr4_3:46538844-46538863 Msa0643500:CDS 45.0%
AGTATTTGCGCCATTGTCTC+TGG - chr4_3:46538896-46538915 None:intergenic 45.0%
CTTTCATGGGGCCATCAATT+AGG + chr4_3:46539277-46539296 Msa0643500:intron 45.0%
TGAACAGGCTCCCTAATTGA+TGG - chr4_3:46539291-46539310 None:intergenic 45.0%
ATTGCTACCTTTGTGCGACT+AGG + chr4_3:46539578-46539597 Msa0643500:intron 45.0%
GACTAGGTCACAAGTTTGAG+TGG + chr4_3:46539594-46539613 Msa0643500:intron 45.0%
TAGGTCACAAGTTTGAGTGG+TGG + chr4_3:46539597-46539616 Msa0643500:intron 45.0%
TCCTTCACACAAAGTCGACA+CGG + chr4_3:46540184-46540203 Msa0643500:intron 45.0%
TGTGCAGCTTCTTTGCTTCT+TGG + chr4_3:46540344-46540363 Msa0643500:intron 45.0%
!!! CTTACAGAACGTTTTTGGCG+AGG - chr4_3:46540431-46540450 None:intergenic 45.0%
CTCGCCAAAAACGTTCTGTA+AGG + chr4_3:46540429-46540448 Msa0643500:CDS 45.0%
! ATGTATTGAGGCATCTCTGG+TGG + chr4_3:46540597-46540616 Msa0643500:three_prime_UTR 45.0%
GGTGGGTAAAGTTTCCCATT+AGG + chr4_3:46540830-46540849 Msa0643500:three_prime_UTR 45.0%
!! ATATTTATTTGTAAATAATT+TGG + chr4_3:46541003-46541022 Msa0643500:three_prime_UTR 5.0%
TGGCACACCGAAACTTAACC+CGG + chr4_3:46530972-46530991 Msa0643500:five_prime_UTR 50.0%
!! TTAGTTTGCGGCAACACGTC+CGG - chr4_3:46530994-46531013 None:intergenic 50.0%
!! CGGCAGGGAGTATTGATTGA+TGG - chr4_3:46531130-46531149 None:intergenic 50.0%
! GGATTTGGTAGCCGGTATCA+AGG + chr4_3:46531400-46531419 Msa0643500:CDS 50.0%
!! CAGTAGTGTCGGTGCTACAT+AGG + chr4_3:46531540-46531559 Msa0643500:intron 50.0%
TATATGGACAGTGGAGGAGG+AGG + chr4_3:46531592-46531611 Msa0643500:intron 50.0%
! TCGCTTTGCTATGTGGTACG+GGG + chr4_3:46531711-46531730 Msa0643500:intron 50.0%
! TTTGCTATGTGGTACGGGGT+CGG + chr4_3:46531715-46531734 Msa0643500:intron 50.0%
GTGCGCTAATTTGGACTCCA+TGG - chr4_3:46532062-46532081 None:intergenic 50.0%
ACAAGGAGGGTTTACCGTTG+GGG - chr4_3:46533310-46533329 None:intergenic 50.0%
CAACAAGGAGGGTTTACCGT+TGG - chr4_3:46533312-46533331 None:intergenic 50.0%
TATGCGAGAGAAGGGGGAAA+TGG - chr4_3:46533393-46533412 None:intergenic 50.0%
TGGGCCAAGAAGAATGCTGT+TGG + chr4_3:46533610-46533629 Msa0643500:CDS 50.0%
GGGCCAAGAAGAATGCTGTT+GGG + chr4_3:46533611-46533630 Msa0643500:CDS 50.0%
GAATGCTGTTGGGAAAGAGC+AGG + chr4_3:46533621-46533640 Msa0643500:CDS 50.0%
AGAGCAGGTGGCAAAATTGG+TGG + chr4_3:46533636-46533655 Msa0643500:CDS 50.0%
TGGTACTATGCCATTAGGCC+TGG + chr4_3:46533787-46533806 Msa0643500:intron 50.0%
CTATGCCATTAGGCCTGGTT+TGG + chr4_3:46533792-46533811 Msa0643500:intron 50.0%
TCAACCCAAACCAGGCCTAA+TGG - chr4_3:46533800-46533819 None:intergenic 50.0%
! CTGTCTCTGTGGAAGTACGT+TGG + chr4_3:46534035-46534054 Msa0643500:CDS 50.0%
!! CTTGGGGCCTATTTGGTTTG+CGG + chr4_3:46534878-46534897 Msa0643500:intron 50.0%
CTGGTTGTGGCCAACTTTAC+AGG - chr4_3:46535140-46535159 None:intergenic 50.0%
TCACCCATCAGTCGGAATAC+TGG - chr4_3:46535159-46535178 None:intergenic 50.0%
CCATGTACTCACCCATCAGT+CGG - chr4_3:46535167-46535186 None:intergenic 50.0%
! TGATGGGTGAGTACATGGTG+TGG + chr4_3:46535169-46535188 Msa0643500:intron 50.0%
CACAAGAGCAGACAAGGACA+TGG + chr4_3:46535696-46535715 Msa0643500:CDS 50.0%
! AGACCTGGTTCTCAGTTGCT+TGG + chr4_3:46536072-46536091 Msa0643500:CDS 50.0%
GTACCACAAGGAGGGACTAA+AGG - chr4_3:46536412-46536431 None:intergenic 50.0%
TAAGCCTTCGTTGTCCGGTA+AGG + chr4_3:46537258-46537277 Msa0643500:intron 50.0%
AAAGCCTTACCGGACAACGA+AGG - chr4_3:46537265-46537284 None:intergenic 50.0%
TTAACACGCCAAGAGCCATC+AGG - chr4_3:46537755-46537774 None:intergenic 50.0%
TGATGGCTCTTGGCGTGTTA+AGG + chr4_3:46537754-46537773 Msa0643500:CDS 50.0%
GGCCAATGGCATCTTCCTAA+TGG + chr4_3:46537815-46537834 Msa0643500:CDS 50.0%
!! GGTTTTTCAGATGGACCTGC+TGG + chr4_3:46537905-46537924 Msa0643500:CDS 50.0%
GGCATTAGGAGGAATCGCAA+TGG + chr4_3:46537938-46537957 Msa0643500:CDS 50.0%
GGAGGAATCGCAATGGGAAT+TGG + chr4_3:46537945-46537964 Msa0643500:CDS 50.0%
ATCACCATCCCGACCACTTT+CGG - chr4_3:46538074-46538093 None:intergenic 50.0%
TGCGCATAACACATCTGCTC+AGG + chr4_3:46538204-46538223 Msa0643500:CDS 50.0%
GCATAACACATCTGCTCAGG+TGG + chr4_3:46538207-46538226 Msa0643500:CDS 50.0%
AACAATTCCAGGAGGTGGCA+TGG - chr4_3:46538341-46538360 None:intergenic 50.0%
GCGTATGGGTCAACAATTCC+AGG - chr4_3:46538352-46538371 None:intergenic 50.0%
GCTGAAGATCAGAATCTCGG+TGG + chr4_3:46538370-46538389 Msa0643500:CDS 50.0%
TCTCGGTGGAAGTTCATGCT+TGG + chr4_3:46538384-46538403 Msa0643500:CDS 50.0%
CTCGGTGGAAGTTCATGCTT+GGG + chr4_3:46538385-46538404 Msa0643500:CDS 50.0%
TCGGTGGAAGTTCATGCTTG+GGG + chr4_3:46538386-46538405 Msa0643500:CDS 50.0%
TGCAGAAGGCAATGACCACA+GGG - chr4_3:46538446-46538465 None:intergenic 50.0%
ATGCAGAAGGCAATGACCAC+AGG - chr4_3:46538447-46538466 None:intergenic 50.0%
GTCATTGCCTTCTGCATCTC+AGG + chr4_3:46538450-46538469 Msa0643500:CDS 50.0%
! ATTGGCTCCCGAAACTGCTT+TGG + chr4_3:46538579-46538598 Msa0643500:CDS 50.0%
TTGGCTCCCGAAACTGCTTT+GGG + chr4_3:46538580-46538599 Msa0643500:CDS 50.0%
CCAGATCCCAAAGCAGTTTC+GGG - chr4_3:46538589-46538608 None:intergenic 50.0%
GCCAGATCCCAAAGCAGTTT+CGG - chr4_3:46538590-46538609 None:intergenic 50.0%
GACAACCCATTGGCATTTGC+TGG + chr4_3:46538670-46538689 Msa0643500:CDS 50.0%
TTCTGCATAGACGACTCAGC+TGG - chr4_3:46538733-46538752 None:intergenic 50.0%
CAAGTCCCATCCAGAGACAA+TGG + chr4_3:46538883-46538902 Msa0643500:CDS 50.0%
TTGCGCCATTGTCTCTGGAT+GGG - chr4_3:46538891-46538910 None:intergenic 50.0%
TTTGCGCCATTGTCTCTGGA+TGG - chr4_3:46538892-46538911 None:intergenic 50.0%
CTTGTGACCTAGTCGCACAA+AGG - chr4_3:46539588-46539607 None:intergenic 50.0%
!! ACCGTGTCGACTTTGTGTGA+AGG - chr4_3:46540188-46540207 None:intergenic 50.0%
TGCAGAAGGTGAGAAGTTGC+TGG - chr4_3:46540240-46540259 None:intergenic 50.0%
CTGACAGAGCAAGTAGACCA+AGG + chr4_3:46540384-46540403 Msa0643500:CDS 50.0%
AGAGCAAGTAGACCAAGGTC+AGG + chr4_3:46540389-46540408 Msa0643500:CDS 50.0%
GTGAAAGGACTACCTGACCT+TGG - chr4_3:46540404-46540423 None:intergenic 50.0%
! GGGGCCTTACAGAACGTTTT+TGG - chr4_3:46540436-46540455 None:intergenic 50.0%
ATCATTTGCCAAAGAGGGGC+AGG - chr4_3:46540651-46540670 None:intergenic 50.0%
! ATCTACCGAGGGTATAGTGC+TGG + chr4_3:46540757-46540776 Msa0643500:three_prime_UTR 50.0%
! TAGTTTGCGGCAACACGTCC+GGG - chr4_3:46530993-46531012 None:intergenic 55.0%
TTGAAATCACGCACGCGGCA+GGG - chr4_3:46531145-46531164 None:intergenic 55.0%
! GCACCGACACTACTGATCGA+AGG - chr4_3:46531535-46531554 None:intergenic 55.0%
GCCCGTGCTTTGTCTTCTGT+AGG + chr4_3:46532948-46532967 Msa0643500:intron 55.0%
TGCTGTTGGGAAAGAGCAGG+TGG + chr4_3:46533624-46533643 Msa0643500:CDS 55.0%
ACTGGTGGGATGCCTTCCAT+AGG - chr4_3:46534344-46534363 None:intergenic 55.0%
! CCGACTGATGGGTGAGTACA+TGG + chr4_3:46535164-46535183 Msa0643500:intron 55.0%
TTCTCTCCACGCACTGCACT+GGG - chr4_3:46535666-46535685 None:intergenic 55.0%
GCTCCAAGCAACTGAGAACC+AGG - chr4_3:46536078-46536097 None:intergenic 55.0%
GGAGCTAACGGTCGTGATGA+TGG + chr4_3:46536093-46536112 Msa0643500:CDS 55.0%
! CAGAAGGCGCAGTTTGCAAC+AGG + chr4_3:46536331-46536350 Msa0643500:CDS 55.0%
AGTTGCGCTTTCCGACAGTC+AGG - chr4_3:46536583-46536602 None:intergenic 55.0%
AGTTGCGCTTTCCGACAGTC+GGG - chr4_3:46536583-46536602 None:intergenic 55.0%
CAGTTGCGCTTTCCGACAGT+CGG - chr4_3:46536584-46536603 None:intergenic 55.0%
CACGCGTCTGTCGTTGTGTT+GGG + chr4_3:46537168-46537187 Msa0643500:CDS 55.0%
ACGCGTCTGTCGTTGTGTTG+GGG + chr4_3:46537169-46537188 Msa0643500:CDS 55.0%
GAGGTTGAGGTGAAGCCTGA+TGG + chr4_3:46537737-46537756 Msa0643500:CDS 55.0%
AGGTGAAGCCTGATGGCTCT+TGG + chr4_3:46537744-46537763 Msa0643500:CDS 55.0%
GATCCCAGTGTTAACCAGGG+TGG + chr4_3:46538094-46538113 Msa0643500:CDS 55.0%
CCACCACCCTGGTTAACACT+GGG - chr4_3:46538100-46538119 None:intergenic 55.0%
ACCACCACCCTGGTTAACAC+TGG - chr4_3:46538101-46538120 None:intergenic 55.0%
! AGTGTTAACCAGGGTGGTGG+TGG + chr4_3:46538100-46538119 Msa0643500:CDS 55.0%
! GTGTTAACCAGGGTGGTGGT+GGG + chr4_3:46538101-46538120 Msa0643500:CDS 55.0%
AACACATCTGCTCAGGTGGG+TGG + chr4_3:46538211-46538230 Msa0643500:CDS 55.0%
ACACATCTGCTCAGGTGGGT+GGG + chr4_3:46538212-46538231 Msa0643500:CDS 55.0%
GGGTCAACAATTCCAGGAGG+TGG - chr4_3:46538346-46538365 None:intergenic 55.0%
TTGCCTTCTGCATCTCAGGC+TGG + chr4_3:46538454-46538473 Msa0643500:CDS 55.0%
TGCAGAGGCCTCTGATGCAT+TGG + chr4_3:46538504-46538523 Msa0643500:CDS 55.0%
!! CCCGAAACTGCTTTGGGATC+TGG + chr4_3:46538586-46538605 Msa0643500:CDS 55.0%
!! ACGACTCAGCTGGTCTTGTG+GGG - chr4_3:46538723-46538742 None:intergenic 55.0%
!! GACGACTCAGCTGGTCTTGT+GGG - chr4_3:46538724-46538743 None:intergenic 55.0%
!! AGACGACTCAGCTGGTCTTG+TGG - chr4_3:46538725-46538744 None:intergenic 55.0%
TGGACATCCCTTACTCTCGG+AGG + chr4_3:46538802-46538821 Msa0643500:CDS 55.0%
ACATCCCTTACTCTCGGAGG+TGG + chr4_3:46538805-46538824 Msa0643500:CDS 55.0%
AGCACCACCTCCGAGAGTAA+GGG - chr4_3:46538812-46538831 None:intergenic 55.0%
AGGGGCAGGTGCAAGCATTA+GGG - chr4_3:46540637-46540656 None:intergenic 55.0%
GTTGAAATCACGCACGCGGC+AGG - chr4_3:46531146-46531165 None:intergenic 60.0%
TACCAACCCAGTGCAGTGCG+TGG + chr4_3:46535657-46535676 Msa0643500:CDS 60.0%
GTTCTCTCCACGCACTGCAC+TGG - chr4_3:46535667-46535686 None:intergenic 60.0%
! TCGGAAAGCGCAACTGCGCA+TGG + chr4_3:46536588-46536607 Msa0643500:intron 60.0%
! TCGGAAAGCGCAACTGTGCG+TGG + chr4_3:46536899-46536918 Msa0643500:intron 60.0%
GGCTCACCGTCAGACTCCTT+TGG - chr4_3:46537131-46537150 None:intergenic 60.0%
GCACGCGTCTGTCGTTGTGT+TGG + chr4_3:46537167-46537186 Msa0643500:CDS 60.0%
CGCGTCTGTCGTTGTGTTGG+GGG + chr4_3:46537170-46537189 Msa0643500:CDS 60.0%
GTCTGTCGTTGTGTTGGGGG+TGG + chr4_3:46537173-46537192 Msa0643500:CDS 60.0%
TCGGAGCCACTGCTGCTCAT+TGG - chr4_3:46538055-46538074 None:intergenic 60.0%
AGCAGCAGTGGCTCCGAAAG+TGG + chr4_3:46538058-46538077 Msa0643500:CDS 60.0%
GCAGTGGCTCCGAAAGTGGT+CGG + chr4_3:46538062-46538081 Msa0643500:CDS 60.0%
CAGTGGCTCCGAAAGTGGTC+GGG + chr4_3:46538063-46538082 Msa0643500:CDS 60.0%
CCCAGTGTTAACCAGGGTGG+TGG + chr4_3:46538097-46538116 Msa0643500:CDS 60.0%
CAATATGCCCACCACCACCC+TGG - chr4_3:46538111-46538130 None:intergenic 60.0%
CACATCTGCTCAGGTGGGTG+GGG + chr4_3:46538213-46538232 Msa0643500:CDS 60.0%
GGTTACTCCATGCCACCTCC+TGG + chr4_3:46538331-46538350 Msa0643500:CDS 60.0%
GGACCAGCCTGAGATGCAGA+AGG - chr4_3:46538460-46538479 None:intergenic 60.0%
! TCTGCATCTCAGGCTGGTCC+AGG + chr4_3:46538460-46538479 Msa0643500:CDS 60.0%
AGCATCTGTCCGTCCAGCAG+AGG - chr4_3:46538629-46538648 None:intergenic 60.0%
CAGCACCACCTCCGAGAGTA+AGG - chr4_3:46538813-46538832 None:intergenic 60.0%
CTTACTCTCGGAGGTGGTGC+TGG + chr4_3:46538811-46538830 Msa0643500:CDS 60.0%
!! GGTGGTGCTGGCGGTAGTAA+TGG + chr4_3:46538823-46538842 Msa0643500:CDS 60.0%
GAGGGGCAGGTGCAAGCATT+AGG - chr4_3:46540638-46540657 None:intergenic 60.0%
TGCTTGCACCTGCCCCTCTT+TGG + chr4_3:46540640-46540659 Msa0643500:three_prime_UTR 60.0%
TGGTACGGGGTCGGCTACCT+GGG + chr4_3:46531724-46531743 Msa0643500:intron 65.0%
CTCCACGCACTGCACTGGGT+TGG - chr4_3:46535662-46535681 None:intergenic 65.0%
GGCTCCGAAAGTGGTCGGGA+TGG + chr4_3:46538067-46538086 Msa0643500:CDS 65.0%
! ACTCTCGGAGGTGGTGCTGG+CGG + chr4_3:46538814-46538833 Msa0643500:CDS 65.0%
GTGGTACGGGGTCGGCTACC+TGG + chr4_3:46531723-46531742 Msa0643500:intron 70.0%
GGTACGGGGTCGGCTACCTG+GGG + chr4_3:46531725-46531744 Msa0643500:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 46530969 46541064 46530969 ID=Msa0643500;Name=Msa0643500
chr4_3 mRNA 46530969 46541064 46530969 ID=Msa0643500-mRNA-1;Parent=Msa0643500;Name=Msa0643500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=340|1|1|1|0.93|0.94|17|574|882
chr4_3 exon 46530969 46531213 46530969 ID=Msa0643500-mRNA-1:exon:10809;Parent=Msa0643500-mRNA-1
chr4_3 exon 46531303 46531421 46531303 ID=Msa0643500-mRNA-1:exon:10810;Parent=Msa0643500-mRNA-1
chr4_3 exon 46532685 46532765 46532685 ID=Msa0643500-mRNA-1:exon:10811;Parent=Msa0643500-mRNA-1
chr4_3 exon 46532970 46533012 46532970 ID=Msa0643500-mRNA-1:exon:10812;Parent=Msa0643500-mRNA-1
chr4_3 exon 46533599 46533671 46533599 ID=Msa0643500-mRNA-1:exon:10813;Parent=Msa0643500-mRNA-1
chr4_3 exon 46533903 46534077 46533903 ID=Msa0643500-mRNA-1:exon:10814;Parent=Msa0643500-mRNA-1
chr4_3 exon 46534281 46534411 46534281 ID=Msa0643500-mRNA-1:exon:10815;Parent=Msa0643500-mRNA-1
chr4_3 exon 46535106 46535174 46535106 ID=Msa0643500-mRNA-1:exon:10816;Parent=Msa0643500-mRNA-1
chr4_3 exon 46535657 46535744 46535657 ID=Msa0643500-mRNA-1:exon:10817;Parent=Msa0643500-mRNA-1
chr4_3 exon 46535825 46535900 46535825 ID=Msa0643500-mRNA-1:exon:10818;Parent=Msa0643500-mRNA-1
chr4_3 exon 46536049 46536122 46536049 ID=Msa0643500-mRNA-1:exon:10819;Parent=Msa0643500-mRNA-1
chr4_3 exon 46536245 46536352 46536245 ID=Msa0643500-mRNA-1:exon:10820;Parent=Msa0643500-mRNA-1
chr4_3 exon 46537113 46537274 46537113 ID=Msa0643500-mRNA-1:exon:10821;Parent=Msa0643500-mRNA-1
chr4_3 exon 46537361 46537465 46537361 ID=Msa0643500-mRNA-1:exon:10822;Parent=Msa0643500-mRNA-1
chr4_3 exon 46537553 46537633 46537553 ID=Msa0643500-mRNA-1:exon:10823;Parent=Msa0643500-mRNA-1
chr4_3 exon 46537710 46538928 46537710 ID=Msa0643500-mRNA-1:exon:10824;Parent=Msa0643500-mRNA-1
chr4_3 exon 46540351 46541064 46540351 ID=Msa0643500-mRNA-1:exon:10825;Parent=Msa0643500-mRNA-1
chr4_3 five_prime_UTR 46530969 46531213 46530969 ID=Msa0643500-mRNA-1:five_prime_utr;Parent=Msa0643500-mRNA-1
chr4_3 five_prime_UTR 46531303 46531397 46531303 ID=Msa0643500-mRNA-1:five_prime_utr;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46531398 46531421 46531398 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46532685 46532765 46532685 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46532970 46533012 46532970 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46533599 46533671 46533599 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46533903 46534077 46533903 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46534281 46534411 46534281 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46535106 46535174 46535106 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46535657 46535744 46535657 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46535825 46535900 46535825 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46536049 46536122 46536049 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46536245 46536352 46536245 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46537113 46537274 46537113 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46537361 46537465 46537361 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46537553 46537633 46537553 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46537710 46538928 46537710 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 CDS 46540351 46540490 46540351 ID=Msa0643500-mRNA-1:cds;Parent=Msa0643500-mRNA-1
chr4_3 three_prime_UTR 46540491 46541064 46540491 ID=Msa0643500-mRNA-1:three_prime_utr;Parent=Msa0643500-mRNA-1
Gene Sequence

>Msa0643500

ATGGATTTGGTAGCCGGTATCAAGGAAAAATTAACATATTTCCGTATCAAAGAGCTCAAGGATGTGCTGACTCAGTTAGGACTTTCAAAACAGGGAAAGAAGCAGGATCTCGTCGATCGGATATTATCCATTCTCTCAGATGAGCAAGTTTCCAGAATATGGGCCAAGAAGAATGCTGTTGGGAAAGAGCAGGTGGCAAAATTGGTGGATGACACATATAGGAAAATGCAGATATCGGGAGCCACTGATCTAGCATCAAAGGGTCAGGTTGTGTCAGATAGTAGTAATGTGAAGGTTAAAGCTGAAGTTGAAGATTCCTTTCAAATTCAATCTACTACAACTACAAAGATTCGCTGTCTCTGTGGAAGTACGTTGGAAACAGGGGATTTGATCAAGTGTGATGATGCAAGATGCCAAGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTATGGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTATGTCGACTCAGTCGTGCAGACCCGTTTTGGGTTTCAGTATCTCATCCTTTGTTACCTGTAAAGTTGGCCACAACCAGTATTCCGACTGATGGTACCAACCCAGTGCAGTGCGTGGAGAGAACATTTCAACTCACAAGAGCAGACAAGGACATGGTATCAAAACAAGAATTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATTCAATGGCCACAGTATACAGACCTAGCAGTTAATGGTCTTCCTATTCGAACAACTAATAGACCTGGTTCTCAGTTGCTTGGAGCTAACGGTCGTGATGATGGTCCAATTATCACGCCGCATACAAAAGACGGAATTAATAAGATTTCCTTAACAGTATGTGATGCTCGCATTTTCTGTTTAGGCGTTCGAATTGTCAGAAGGCGCAGTTTGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGACGGTGAGCCTTTTGAAGATGCTCTTGCACGCGTCTGTCGTTGTGTTGGGGGTGGAAATGCAGCTGACAATGCTGATAGCGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGTATAAGCCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCCGGAAGATTCAAACCTTGCATTCACATGGGTTGTTTTGATCTTGATGTTTTTGTGGAAATGAATCAACGGTCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCATTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATTAATTGCGGTGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGCTCTTGGCGTGTTAAGGCAAAGAGTGAAAGTGAACGTCTGGATTTAGGGATTCTTGGCCAATGGCATCTTCCTAATGGATCCCTTTGTACTTCTACTGCTGGAGATATCAAGAGAGTAGAAACACTGAAGCAAGTAAAACAGGAAGGTTTTTCAGATGGACCTGCTGGTTTAAAACTTGGCATTAGGAGGAATCGCAATGGGAATTGGGAAGTCAGTAAGCCCGAGACAACAAACACCTCTTCTGGTCATATATTAAGAGAGGTTTTTGGAAATCCTGAACAAGTTGTTATTCCAATGAGCAGCAGTGGCTCCGAAAGTGGTCGGGATGGTGATGATCCCAGTGTTAACCAGGGTGGTGGTGGGCATATTGATTATTCTACTACCAATGGAATTGAGATGGATTCTCAGTCTCTCAATAATGTTGATTTAGCTCGTGGATATACTGCGCATAACACATCTGCTCAGGTGGGTGGGGCAGAGATAATTGTTCTTAGCGACTCTGAAGAAGACAATGACATATTGGTGTCTCCTCCAATTGCAAATAACAACCACCAAAATGATATTGCAGATGGTTACTCCATGCCACCTCCTGGAATTGTTGACCCATACGCTGAAGATCAGAATCTCGGTGGAAGTTCATGCTTGGGGCTTTTTCCTAATGAAGATGATTTTGGAATATCTTCCCTGTGGTCATTGCCTTCTGCATCTCAGGCTGGTCCAGGATTCCAATTGTTCGGTTCTGATGCAGAGGCCTCTGATGCATTGGTTCATTTGCAGCATGTTCCTATTAATTGCACCTCATCACTGAACGGTTATGCATTGGCTCCCGAAACTGCTTTGGGATCTGGCAGTCTCTTACAAGATTCCTCTGCTGGACGGACAGATGCTGACTTAAACGGTGGTTTGGTTGACAACCCATTGGCATTTGCTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCTGAGTCGTCTATGCAGAATGAATTGAGAGATCAAGCAAATGTCTCTAATGGTGTTTCCACTGAAGATTGGACATCCCTTACTCTCGGAGGTGGTGCTGGCGGTAGTAATGGTGATGCTTCCACTCAAAATGGATTGAATTCTAGACATCAAGTCCCATCCAGAGACAATGGCGCAAATACTTTGGCTGATTCTGCTTCTTTGCTTCTTGGTATGAATGATGTAAGATCTGACAGAGCAAGTAGACCAAGGTCAGGTAGTCCTTTCACATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATTCGGAATCGGAATAA
Protein sequence

>Msa0643500

MDLVAGIKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSRIWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQVVSDSSNVKVKAEVEDSFQIQSTTTTKIRCLCGSTLETGDLIKCDDARCQVWQHISCVIIPEKPMEGIPPVPDKFYCELCRLSRADPFWVSVSHPLLPVKLATTSIPTDGTNPVQCVERTFQLTRADKDMVSKQEFDVEAWCMLLNDKVPFRIQWPQYTDLAVNGLPIRTTNRPGSQLLGANGRDDGPIITPHTKDGINKISLTVCDARIFCLGVRIVRRRSLQQILNLIPKESDGEPFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSISLRCPMSGSRMKIAGRFKPCIHMGCFDLDVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMINCGEDVTEVEVKPDGSWRVKAKSESERLDLGILGQWHLPNGSLCTSTAGDIKRVETLKQVKQEGFSDGPAGLKLGIRRNRNGNWEVSKPETTNTSSGHILREVFGNPEQVVIPMSSSGSESGRDGDDPSVNQGGGGHIDYSTTNGIEMDSQSLNNVDLARGYTAHNTSAQVGGAEIIVLSDSEEDNDILVSPPIANNNHQNDIADGYSMPPPGIVDPYAEDQNLGGSSCLGLFPNEDDFGISSLWSLPSASQAGPGFQLFGSDAEASDALVHLQHVPINCTSSLNGYALAPETALGSGSLLQDSSAGRTDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSMQNELRDQANVSNGVSTEDWTSLTLGGGAGGSNGDASTQNGLNSRHQVPSRDNGANTLADSASLLLGMNDVRSDRASRPRSGSPFTFPRQKRSVRPRLYLSIDSESE*