Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644260 | KEH30134.1 | 95.349 | 258 | 7 | 3 | 1 | 254 | 1 | 257 | 1.24e-178 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644260 | sp|Q6X7K1|WOX2_ARATH | 40.856 | 257 | 115 | 8 | 17 | 250 | 6 | 248 | 3.20e-52 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644260 | A0A072UK53 | 95.349 | 258 | 7 | 3 | 1 | 254 | 1 | 257 | 5.95e-179 | 501 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0644260 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644260 | MtrunA17_Chr4g0031341 | 95.349 | 258 | 7 | 3 | 1 | 254 | 1 | 257 | 0.0 | 501 |
| Msa0644260 | MtrunA17_Chr8g0392991 | 56.383 | 94 | 35 | 2 | 12 | 99 | 80 | 173 | 5.23e-28 | 109 |
| Msa0644260 | MtrunA17_Chr1g0153171 | 34.359 | 195 | 98 | 4 | 4 | 196 | 69 | 235 | 2.22e-27 | 105 |
| Msa0644260 | MtrunA17_Chr4g0043891 | 67.692 | 65 | 21 | 0 | 23 | 87 | 6 | 70 | 3.88e-26 | 102 |
| Msa0644260 | MtrunA17_Chr7g0238431 | 66.667 | 66 | 22 | 0 | 23 | 88 | 6 | 71 | 5.14e-26 | 101 |
| Msa0644260 | MtrunA17_Chr5g0405351 | 68.182 | 66 | 20 | 1 | 22 | 86 | 27 | 92 | 4.88e-25 | 100 |
| Msa0644260 | MtrunA17_Chr5g0436661 | 51.899 | 79 | 37 | 1 | 13 | 90 | 20 | 98 | 2.72e-24 | 95.9 |
| Msa0644260 | MtrunA17_Chr8g0385441 | 65.455 | 55 | 19 | 0 | 34 | 88 | 91 | 145 | 2.41e-20 | 85.1 |
| Msa0644260 | MtrunA17_Chr3g0125111 | 48.193 | 83 | 41 | 1 | 6 | 88 | 63 | 143 | 4.83e-20 | 84.3 |
| Msa0644260 | MtrunA17_Chr2g0283141 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 3.17e-14 | 71.6 |
| Msa0644260 | MtrunA17_Chr7g0223471 | 45.161 | 62 | 34 | 0 | 25 | 86 | 47 | 108 | 1.16e-13 | 70.1 |
| Msa0644260 | MtrunA17_Chr1g0212511 | 46.154 | 65 | 35 | 0 | 20 | 84 | 80 | 144 | 4.24e-13 | 67.4 |
| Msa0644260 | MtrunA17_Chr3g0144021 | 40.909 | 66 | 39 | 0 | 20 | 85 | 77 | 142 | 8.05e-12 | 63.2 |
| Msa0644260 | MtrunA17_Chr7g0222981 | 45.161 | 62 | 34 | 0 | 25 | 86 | 68 | 129 | 2.66e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644260 | AT5G59340.1 | 40.856 | 257 | 115 | 8 | 17 | 250 | 6 | 248 | 3.26e-53 | 173 |
| Msa0644260 | AT3G18010.1 | 45.312 | 128 | 57 | 2 | 20 | 134 | 71 | 198 | 5.63e-29 | 112 |
| Msa0644260 | AT1G46480.1 | 36.994 | 173 | 98 | 3 | 24 | 196 | 89 | 250 | 1.56e-26 | 103 |
| Msa0644260 | AT1G46480.2 | 65.672 | 67 | 23 | 0 | 24 | 90 | 89 | 155 | 3.43e-26 | 101 |
| Msa0644260 | AT2G28610.1 | 62.687 | 67 | 25 | 0 | 22 | 88 | 5 | 71 | 7.38e-25 | 99.4 |
| Msa0644260 | AT3G11260.1 | 50.000 | 80 | 40 | 0 | 13 | 92 | 12 | 91 | 8.18e-25 | 97.8 |
| Msa0644260 | AT5G05770.1 | 54.054 | 74 | 34 | 0 | 21 | 94 | 25 | 98 | 1.09e-24 | 95.5 |
| Msa0644260 | AT2G17950.1 | 63.636 | 66 | 23 | 1 | 22 | 86 | 35 | 100 | 2.11e-23 | 96.7 |
| Msa0644260 | AT2G01500.1 | 64.407 | 59 | 21 | 0 | 21 | 79 | 57 | 115 | 5.10e-22 | 92.4 |
| Msa0644260 | AT5G45980.1 | 51.613 | 62 | 30 | 0 | 25 | 86 | 55 | 116 | 7.14e-15 | 73.6 |
| Msa0644260 | AT1G20700.2 | 40.506 | 79 | 47 | 0 | 13 | 91 | 21 | 99 | 7.50e-15 | 70.1 |
| Msa0644260 | AT1G20700.3 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 1.80e-14 | 70.5 |
| Msa0644260 | AT1G20700.1 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 1.84e-14 | 70.5 |
| Msa0644260 | AT2G33880.2 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 8.96e-14 | 70.5 |
| Msa0644260 | AT2G33880.1 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 9.16e-14 | 70.5 |
| Msa0644260 | AT4G35550.1 | 40.278 | 72 | 43 | 0 | 14 | 85 | 88 | 159 | 3.01e-13 | 68.2 |
| Msa0644260 | AT1G20710.1 | 50.000 | 54 | 27 | 0 | 32 | 85 | 86 | 139 | 2.03e-11 | 62.0 |
Find 44 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATAGGTGAAGGATAAA+TGG | 0.223363 | 4_3:-47932604 | None:intergenic |
| AATCAAGATCATGGTTATAA+TGG | 0.248654 | 4_3:+47933853 | Msa0644260:CDS |
| CTGTAACCAAAGTTATAGTT+AGG | 0.305798 | 4_3:-47933685 | None:intergenic |
| TTCTGCAGGACAAGGTTCTT+AGG | 0.334683 | 4_3:+47933906 | Msa0644260:CDS |
| AGTTCCACTGATACACATTC+TGG | 0.341293 | 4_3:+47933808 | Msa0644260:CDS |
| AACATACCATTTGGACAAAT+AGG | 0.347632 | 4_3:-47932618 | None:intergenic |
| ACTGCATCCAACTGGCATAT+TGG | 0.347683 | 4_3:+47933735 | Msa0644260:CDS |
| ACTGCAGGTAGAAGCACTTT+TGG | 0.360138 | 4_3:-47933562 | None:intergenic |
| TAGCTTATTTCATGACTTTG+TGG | 0.366655 | 4_3:-47933526 | None:intergenic |
| CCTTCACCTATTTGTCCAAA+TGG | 0.376093 | 4_3:+47932612 | Msa0644260:CDS |
| ATCAAGATCATGGTTATAAT+GGG | 0.392817 | 4_3:+47933854 | Msa0644260:CDS |
| ATGAATGAGGAAGGTTCAAA+TGG | 0.394930 | 4_3:+47932324 | Msa0644260:CDS |
| TGTGGTTGTGGTACGCAATA+TGG | 0.424892 | 4_3:-47933508 | None:intergenic |
| ATTTCATGACTTTGTGGTTG+TGG | 0.425330 | 4_3:-47933520 | None:intergenic |
| CAAATAGGTGAAGGATAAAT+GGG | 0.425469 | 4_3:-47932603 | None:intergenic |
| TCTTGTATTTCTTCAGCACT+TGG | 0.437582 | 4_3:-47932438 | None:intergenic |
| TTGTTTCCACTGCATCCAAC+TGG | 0.438638 | 4_3:+47933727 | Msa0644260:CDS |
| AGAATCCCTAACTATAACTT+TGG | 0.443156 | 4_3:+47933679 | Msa0644260:CDS |
| TTCCCTTCCAATATGCCAGT+TGG | 0.473137 | 4_3:-47933742 | None:intergenic |
| GCTGAGAAAGTTATGTCAAA+TGG | 0.482284 | 4_3:+47933604 | Msa0644260:CDS |
| ACTGCTAGGCTTAGAGTGTA+TGG | 0.483688 | 4_3:+47932465 | Msa0644260:CDS |
| TGTAACCAAAGTTATAGTTA+GGG | 0.484125 | 4_3:-47933684 | None:intergenic |
| TTGGAGAATTTGTATAAGCA+AGG | 0.498360 | 4_3:+47932405 | Msa0644260:CDS |
| AAAAGAACAAATTAGTATGT+TGG | 0.499598 | 4_3:+47932386 | Msa0644260:CDS |
| CATGATATCAATCAAGATCA+TGG | 0.502262 | 4_3:+47933844 | Msa0644260:CDS |
| CATCCAACTGGCATATTGGA+AGG | 0.509666 | 4_3:+47933739 | Msa0644260:CDS |
| TGAATGAGGAAGGTTCAAAT+GGG | 0.520103 | 4_3:+47932325 | Msa0644260:CDS |
| TTACAGTAATCAAGAAACAT+TGG | 0.520782 | 4_3:+47933702 | Msa0644260:CDS |
| AATAATGATATGAATGAGGA+AGG | 0.537613 | 4_3:+47932315 | Msa0644260:CDS |
| GGTGAAGGATAAATGGGTTG+AGG | 0.539516 | 4_3:-47932597 | None:intergenic |
| TTTAATAATTCTGCAGGACA+AGG | 0.556573 | 4_3:+47933898 | Msa0644260:CDS |
| TTCCTTCTAAAACCTACTGC+AGG | 0.572590 | 4_3:-47933577 | None:intergenic |
| CTGAAACAATAGAAGACACC+TGG | 0.584011 | 4_3:-47933774 | None:intergenic |
| AAAGTGCTTCTACCTGCAGT+AGG | 0.586289 | 4_3:+47933565 | Msa0644260:CDS |
| AATATGCCAGTTGGATGCAG+TGG | 0.586423 | 4_3:-47933733 | None:intergenic |
| GAATAATAATGATATGAATG+AGG | 0.589218 | 4_3:+47932311 | Msa0644260:CDS |
| AGAACCAGAATGTGTATCAG+TGG | 0.599607 | 4_3:-47933812 | None:intergenic |
| AGAGTGTATGGTCACATCGA+AGG | 0.601558 | 4_3:+47932477 | Msa0644260:CDS |
| AAATATCTGCAATAGTCCAA+TGG | 0.604277 | 4_3:+47933633 | Msa0644260:CDS |
| CCATTTGGACAAATAGGTGA+AGG | 0.604508 | 4_3:-47932612 | None:intergenic |
| AAATACAAGAAATCACTGCT+AGG | 0.611419 | 4_3:+47932451 | Msa0644260:CDS |
| ATCCAACTGGCATATTGGAA+GGG | 0.612491 | 4_3:+47933740 | Msa0644260:CDS |
| GGAAGGGAAAACAACTGACC+AGG | 0.627194 | 4_3:+47933756 | Msa0644260:CDS |
| GTATTTCATCAAGTTCACGA+TGG | 0.702362 | 4_3:+47932355 | Msa0644260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTCTTATTATATTTTCA+TGG | + | chr4_3:47932715-47932734 | Msa0644260:intron | 15.0% |
| !! | ATAACTAATAGTTAAAAACA+AGG | - | chr4_3:47933003-47933022 | None:intergenic | 15.0% |
| !!! | AACTAAAAAAGCATTAAAAA+AGG | + | chr4_3:47933312-47933331 | Msa0644260:intron | 15.0% |
| !!! | GGTAATTGAATTATTATTTT+TGG | + | chr4_3:47933467-47933486 | Msa0644260:intron | 15.0% |
| !! | TTATTAAAAAAGTCAAAGAA+GGG | - | chr4_3:47933886-47933905 | None:intergenic | 15.0% |
| !! | ATTATTAAAAAAGTCAAAGA+AGG | - | chr4_3:47933887-47933906 | None:intergenic | 15.0% |
| !!! | TTGTTCTTATTATATTTTCA+TGG | + | chr4_3:47932715-47932734 | Msa0644260:intron | 15.0% |
| !! | ATAACTAATAGTTAAAAACA+AGG | - | chr4_3:47933003-47933022 | None:intergenic | 15.0% |
| !!! | AACTAAAAAAGCATTAAAAA+AGG | + | chr4_3:47933312-47933331 | Msa0644260:intron | 15.0% |
| !!! | GGTAATTGAATTATTATTTT+TGG | + | chr4_3:47933467-47933486 | Msa0644260:intron | 15.0% |
| !! | TTATTAAAAAAGTCAAAGAA+GGG | - | chr4_3:47933886-47933905 | None:intergenic | 15.0% |
| !! | ATTATTAAAAAAGTCAAAGA+AGG | - | chr4_3:47933887-47933906 | None:intergenic | 15.0% |
| !! | GAATAATAATGATATGAATG+AGG | + | chr4_3:47932311-47932330 | Msa0644260:CDS | 20.0% |
| !!! | TACTAATTTGTTCTTTTGTT+GGG | - | chr4_3:47932383-47932402 | None:intergenic | 20.0% |
| !!! | ATACTAATTTGTTCTTTTGT+TGG | - | chr4_3:47932384-47932403 | None:intergenic | 20.0% |
| !! | AAAAGAACAAATTAGTATGT+TGG | + | chr4_3:47932386-47932405 | Msa0644260:CDS | 20.0% |
| !! | CAAAAACATTGATATGAAAA+TGG | - | chr4_3:47932698-47932717 | None:intergenic | 20.0% |
| !! | ATCTATATTGTGGTAAAATA+TGG | + | chr4_3:47932947-47932966 | Msa0644260:intron | 20.0% |
| !! | TCTATATTGTGGTAAAATAT+GGG | + | chr4_3:47932948-47932967 | Msa0644260:intron | 20.0% |
| !! | TGAAAATGAGATTTATTGAA+AGG | - | chr4_3:47933100-47933119 | None:intergenic | 20.0% |
| !!! | TTCAATAAATCTCATTTTCA+TGG | + | chr4_3:47933100-47933119 | Msa0644260:intron | 20.0% |
| !! | ACCAAAAATAAAATACTAGA+AGG | - | chr4_3:47933192-47933211 | None:intergenic | 20.0% |
| !!! | ATGTTTTCATTATATACCAT+TGG | - | chr4_3:47933652-47933671 | None:intergenic | 20.0% |
| !! | GAATAATAATGATATGAATG+AGG | + | chr4_3:47932311-47932330 | Msa0644260:CDS | 20.0% |
| !!! | TACTAATTTGTTCTTTTGTT+GGG | - | chr4_3:47932383-47932402 | None:intergenic | 20.0% |
| !!! | ATACTAATTTGTTCTTTTGT+TGG | - | chr4_3:47932384-47932403 | None:intergenic | 20.0% |
| !! | AAAAGAACAAATTAGTATGT+TGG | + | chr4_3:47932386-47932405 | Msa0644260:CDS | 20.0% |
| !! | CAAAAACATTGATATGAAAA+TGG | - | chr4_3:47932698-47932717 | None:intergenic | 20.0% |
| !! | ATCTATATTGTGGTAAAATA+TGG | + | chr4_3:47932947-47932966 | Msa0644260:intron | 20.0% |
| !! | TCTATATTGTGGTAAAATAT+GGG | + | chr4_3:47932948-47932967 | Msa0644260:intron | 20.0% |
| !! | TGAAAATGAGATTTATTGAA+AGG | - | chr4_3:47933100-47933119 | None:intergenic | 20.0% |
| !!! | TTCAATAAATCTCATTTTCA+TGG | + | chr4_3:47933100-47933119 | Msa0644260:intron | 20.0% |
| !! | ACCAAAAATAAAATACTAGA+AGG | - | chr4_3:47933192-47933211 | None:intergenic | 20.0% |
| !!! | ATGTTTTCATTATATACCAT+TGG | - | chr4_3:47933652-47933671 | None:intergenic | 20.0% |
| ! | AATAATGATATGAATGAGGA+AGG | + | chr4_3:47932315-47932334 | Msa0644260:CDS | 25.0% |
| ! | TATAACCTAGAACTAGAAAA+AGG | - | chr4_3:47932655-47932674 | None:intergenic | 25.0% |
| ! | TATCTTTGTACGACATAAAA+TGG | + | chr4_3:47932843-47932862 | Msa0644260:intron | 25.0% |
| !!! | TTGTTGTTGTATCTTTTTCA+TGG | + | chr4_3:47932913-47932932 | Msa0644260:intron | 25.0% |
| ! | TAAAACGGGATTTATATAGA+GGG | - | chr4_3:47933066-47933085 | None:intergenic | 25.0% |
| ! | AAGGTTAATTTCTCCTAAAA+CGG | - | chr4_3:47933081-47933100 | None:intergenic | 25.0% |
| !!! | GCCTTCTAGTATTTTATTTT+TGG | + | chr4_3:47933188-47933207 | Msa0644260:intron | 25.0% |
| ! | CAAATAAATTACTCCATCTT+TGG | - | chr4_3:47933361-47933380 | None:intergenic | 25.0% |
| ! | TGTAACCAAAGTTATAGTTA+GGG | - | chr4_3:47933687-47933706 | None:intergenic | 25.0% |
| ! | TTACAGTAATCAAGAAACAT+TGG | + | chr4_3:47933702-47933721 | Msa0644260:CDS | 25.0% |
| ! | AATCAAGATCATGGTTATAA+TGG | + | chr4_3:47933853-47933872 | Msa0644260:CDS | 25.0% |
| ! | ATCAAGATCATGGTTATAAT+GGG | + | chr4_3:47933854-47933873 | Msa0644260:CDS | 25.0% |
| !!! | GACTTTTTTAATAATTCTGC+AGG | + | chr4_3:47933892-47933911 | Msa0644260:CDS | 25.0% |
| ! | AATAATGATATGAATGAGGA+AGG | + | chr4_3:47932315-47932334 | Msa0644260:CDS | 25.0% |
| ! | TATAACCTAGAACTAGAAAA+AGG | - | chr4_3:47932655-47932674 | None:intergenic | 25.0% |
| ! | TATCTTTGTACGACATAAAA+TGG | + | chr4_3:47932843-47932862 | Msa0644260:intron | 25.0% |
| !!! | TTGTTGTTGTATCTTTTTCA+TGG | + | chr4_3:47932913-47932932 | Msa0644260:intron | 25.0% |
| ! | TAAAACGGGATTTATATAGA+GGG | - | chr4_3:47933066-47933085 | None:intergenic | 25.0% |
| ! | AAGGTTAATTTCTCCTAAAA+CGG | - | chr4_3:47933081-47933100 | None:intergenic | 25.0% |
| !!! | GCCTTCTAGTATTTTATTTT+TGG | + | chr4_3:47933188-47933207 | Msa0644260:intron | 25.0% |
| ! | CAAATAAATTACTCCATCTT+TGG | - | chr4_3:47933361-47933380 | None:intergenic | 25.0% |
| ! | TGTAACCAAAGTTATAGTTA+GGG | - | chr4_3:47933687-47933706 | None:intergenic | 25.0% |
| ! | TTACAGTAATCAAGAAACAT+TGG | + | chr4_3:47933702-47933721 | Msa0644260:CDS | 25.0% |
| ! | AATCAAGATCATGGTTATAA+TGG | + | chr4_3:47933853-47933872 | Msa0644260:CDS | 25.0% |
| ! | ATCAAGATCATGGTTATAAT+GGG | + | chr4_3:47933854-47933873 | Msa0644260:CDS | 25.0% |
| !!! | GACTTTTTTAATAATTCTGC+AGG | + | chr4_3:47933892-47933911 | Msa0644260:CDS | 25.0% |
| TTGGAGAATTTGTATAAGCA+AGG | + | chr4_3:47932405-47932424 | Msa0644260:CDS | 30.0% | |
| AAATACAAGAAATCACTGCT+AGG | + | chr4_3:47932451-47932470 | Msa0644260:CDS | 30.0% | |
| ! | AAGGAAAGAATGTCTTTTAC+TGG | + | chr4_3:47932496-47932515 | Msa0644260:CDS | 30.0% |
| CAAATAGGTGAAGGATAAAT+GGG | - | chr4_3:47932606-47932625 | None:intergenic | 30.0% | |
| ACAAATAGGTGAAGGATAAA+TGG | - | chr4_3:47932607-47932626 | None:intergenic | 30.0% | |
| AACATACCATTTGGACAAAT+AGG | - | chr4_3:47932621-47932640 | None:intergenic | 30.0% | |
| !!! | TTCTTCCTTTTTCTAGTTCT+AGG | + | chr4_3:47932647-47932666 | Msa0644260:intron | 30.0% |
| ! | AACCTAATGAGTACTACTTT+TGG | - | chr4_3:47932756-47932775 | None:intergenic | 30.0% |
| CCATATTTAAATTGTGCTAG+CGG | + | chr4_3:47932781-47932800 | Msa0644260:intron | 30.0% | |
| TTCTGCAAACATCTATATTG+TGG | + | chr4_3:47932937-47932956 | Msa0644260:intron | 30.0% | |
| ! | AAAACAAGGTGCATTTTCAA+CGG | - | chr4_3:47932989-47933008 | None:intergenic | 30.0% |
| CTAAAACGGGATTTATATAG+AGG | - | chr4_3:47933067-47933086 | None:intergenic | 30.0% | |
| ! | CTCTATATAAATCCCGTTTT+AGG | + | chr4_3:47933065-47933084 | Msa0644260:intron | 30.0% |
| AGGTTAATTTCTCCTAAAAC+GGG | - | chr4_3:47933080-47933099 | None:intergenic | 30.0% | |
| TTTCTTCATGCAAATGTGTT+TGG | + | chr4_3:47933250-47933269 | Msa0644260:intron | 30.0% | |
| AACAGAAACATAACCAAAGA+TGG | + | chr4_3:47933345-47933364 | Msa0644260:intron | 30.0% | |
| TAGCTTATTTCATGACTTTG+TGG | - | chr4_3:47933529-47933548 | None:intergenic | 30.0% | |
| AAATATCTGCAATAGTCCAA+TGG | + | chr4_3:47933633-47933652 | Msa0644260:CDS | 30.0% | |
| AGAATCCCTAACTATAACTT+TGG | + | chr4_3:47933679-47933698 | Msa0644260:CDS | 30.0% | |
| CTGTAACCAAAGTTATAGTT+AGG | - | chr4_3:47933688-47933707 | None:intergenic | 30.0% | |
| CATGATATCAATCAAGATCA+TGG | + | chr4_3:47933844-47933863 | Msa0644260:CDS | 30.0% | |
| TTTAATAATTCTGCAGGACA+AGG | + | chr4_3:47933898-47933917 | Msa0644260:CDS | 30.0% | |
| TTGGAGAATTTGTATAAGCA+AGG | + | chr4_3:47932405-47932424 | Msa0644260:CDS | 30.0% | |
| AAATACAAGAAATCACTGCT+AGG | + | chr4_3:47932451-47932470 | Msa0644260:CDS | 30.0% | |
| ! | AAGGAAAGAATGTCTTTTAC+TGG | + | chr4_3:47932496-47932515 | Msa0644260:CDS | 30.0% |
| CAAATAGGTGAAGGATAAAT+GGG | - | chr4_3:47932606-47932625 | None:intergenic | 30.0% | |
| ACAAATAGGTGAAGGATAAA+TGG | - | chr4_3:47932607-47932626 | None:intergenic | 30.0% | |
| AACATACCATTTGGACAAAT+AGG | - | chr4_3:47932621-47932640 | None:intergenic | 30.0% | |
| !!! | TTCTTCCTTTTTCTAGTTCT+AGG | + | chr4_3:47932647-47932666 | Msa0644260:intron | 30.0% |
| ! | AACCTAATGAGTACTACTTT+TGG | - | chr4_3:47932756-47932775 | None:intergenic | 30.0% |
| CCATATTTAAATTGTGCTAG+CGG | + | chr4_3:47932781-47932800 | Msa0644260:intron | 30.0% | |
| TTCTGCAAACATCTATATTG+TGG | + | chr4_3:47932937-47932956 | Msa0644260:intron | 30.0% | |
| ! | AAAACAAGGTGCATTTTCAA+CGG | - | chr4_3:47932989-47933008 | None:intergenic | 30.0% |
| CTAAAACGGGATTTATATAG+AGG | - | chr4_3:47933067-47933086 | None:intergenic | 30.0% | |
| ! | CTCTATATAAATCCCGTTTT+AGG | + | chr4_3:47933065-47933084 | Msa0644260:intron | 30.0% |
| AGGTTAATTTCTCCTAAAAC+GGG | - | chr4_3:47933080-47933099 | None:intergenic | 30.0% | |
| TTTCTTCATGCAAATGTGTT+TGG | + | chr4_3:47933250-47933269 | Msa0644260:intron | 30.0% | |
| AACAGAAACATAACCAAAGA+TGG | + | chr4_3:47933345-47933364 | Msa0644260:intron | 30.0% | |
| TAGCTTATTTCATGACTTTG+TGG | - | chr4_3:47933529-47933548 | None:intergenic | 30.0% | |
| AAATATCTGCAATAGTCCAA+TGG | + | chr4_3:47933633-47933652 | Msa0644260:CDS | 30.0% | |
| AGAATCCCTAACTATAACTT+TGG | + | chr4_3:47933679-47933698 | Msa0644260:CDS | 30.0% | |
| CTGTAACCAAAGTTATAGTT+AGG | - | chr4_3:47933688-47933707 | None:intergenic | 30.0% | |
| CATGATATCAATCAAGATCA+TGG | + | chr4_3:47933844-47933863 | Msa0644260:CDS | 30.0% | |
| TTTAATAATTCTGCAGGACA+AGG | + | chr4_3:47933898-47933917 | Msa0644260:CDS | 30.0% | |
| ATGAATGAGGAAGGTTCAAA+TGG | + | chr4_3:47932324-47932343 | Msa0644260:CDS | 35.0% | |
| TGAATGAGGAAGGTTCAAAT+GGG | + | chr4_3:47932325-47932344 | Msa0644260:CDS | 35.0% | |
| GTATTTCATCAAGTTCACGA+TGG | + | chr4_3:47932355-47932374 | Msa0644260:CDS | 35.0% | |
| TCTTGTATTTCTTCAGCACT+TGG | - | chr4_3:47932441-47932460 | None:intergenic | 35.0% | |
| GAAGTTGAGAACATACCATT+TGG | - | chr4_3:47932630-47932649 | None:intergenic | 35.0% | |
| TGCCAAAAGTAGTACTCATT+AGG | + | chr4_3:47932751-47932770 | Msa0644260:intron | 35.0% | |
| CCGCTAGCACAATTTAAATA+TGG | - | chr4_3:47932784-47932803 | None:intergenic | 35.0% | |
| CTAGTATTCTACTGTAACGT+TGG | + | chr4_3:47933446-47933465 | Msa0644260:intron | 35.0% | |
| ATTTCATGACTTTGTGGTTG+TGG | - | chr4_3:47933523-47933542 | None:intergenic | 35.0% | |
| !! | GAAGCACTTTTGGATTTTGA+GGG | - | chr4_3:47933555-47933574 | None:intergenic | 35.0% |
| !!! | AGAAGCACTTTTGGATTTTG+AGG | - | chr4_3:47933556-47933575 | None:intergenic | 35.0% |
| GCTGAGAAAGTTATGTCAAA+TGG | + | chr4_3:47933604-47933623 | Msa0644260:CDS | 35.0% | |
| ATGAATGAGGAAGGTTCAAA+TGG | + | chr4_3:47932324-47932343 | Msa0644260:CDS | 35.0% | |
| TGAATGAGGAAGGTTCAAAT+GGG | + | chr4_3:47932325-47932344 | Msa0644260:CDS | 35.0% | |
| GTATTTCATCAAGTTCACGA+TGG | + | chr4_3:47932355-47932374 | Msa0644260:CDS | 35.0% | |
| TCTTGTATTTCTTCAGCACT+TGG | - | chr4_3:47932441-47932460 | None:intergenic | 35.0% | |
| GAAGTTGAGAACATACCATT+TGG | - | chr4_3:47932630-47932649 | None:intergenic | 35.0% | |
| TGCCAAAAGTAGTACTCATT+AGG | + | chr4_3:47932751-47932770 | Msa0644260:intron | 35.0% | |
| CCGCTAGCACAATTTAAATA+TGG | - | chr4_3:47932784-47932803 | None:intergenic | 35.0% | |
| CTAGTATTCTACTGTAACGT+TGG | + | chr4_3:47933446-47933465 | Msa0644260:intron | 35.0% | |
| ATTTCATGACTTTGTGGTTG+TGG | - | chr4_3:47933523-47933542 | None:intergenic | 35.0% | |
| !! | GAAGCACTTTTGGATTTTGA+GGG | - | chr4_3:47933555-47933574 | None:intergenic | 35.0% |
| !!! | AGAAGCACTTTTGGATTTTG+AGG | - | chr4_3:47933556-47933575 | None:intergenic | 35.0% |
| GCTGAGAAAGTTATGTCAAA+TGG | + | chr4_3:47933604-47933623 | Msa0644260:CDS | 35.0% | |
| CCATTTGGACAAATAGGTGA+AGG | - | chr4_3:47932615-47932634 | None:intergenic | 40.0% | |
| CCTTCACCTATTTGTCCAAA+TGG | + | chr4_3:47932612-47932631 | Msa0644260:CDS | 40.0% | |
| !!! | TACCTGCAGTAGGTTTTAGA+AGG | + | chr4_3:47933575-47933594 | Msa0644260:CDS | 40.0% |
| !! | TTCCTTCTAAAACCTACTGC+AGG | - | chr4_3:47933580-47933599 | None:intergenic | 40.0% |
| ATCCAACTGGCATATTGGAA+GGG | + | chr4_3:47933740-47933759 | Msa0644260:CDS | 40.0% | |
| CTGAAACAATAGAAGACACC+TGG | - | chr4_3:47933777-47933796 | None:intergenic | 40.0% | |
| AGTTCCACTGATACACATTC+TGG | + | chr4_3:47933808-47933827 | Msa0644260:CDS | 40.0% | |
| AGAACCAGAATGTGTATCAG+TGG | - | chr4_3:47933815-47933834 | None:intergenic | 40.0% | |
| CCATTTGGACAAATAGGTGA+AGG | - | chr4_3:47932615-47932634 | None:intergenic | 40.0% | |
| CCTTCACCTATTTGTCCAAA+TGG | + | chr4_3:47932612-47932631 | Msa0644260:CDS | 40.0% | |
| !!! | TACCTGCAGTAGGTTTTAGA+AGG | + | chr4_3:47933575-47933594 | Msa0644260:CDS | 40.0% |
| !! | TTCCTTCTAAAACCTACTGC+AGG | - | chr4_3:47933580-47933599 | None:intergenic | 40.0% |
| ATCCAACTGGCATATTGGAA+GGG | + | chr4_3:47933740-47933759 | Msa0644260:CDS | 40.0% | |
| CTGAAACAATAGAAGACACC+TGG | - | chr4_3:47933777-47933796 | None:intergenic | 40.0% | |
| AGTTCCACTGATACACATTC+TGG | + | chr4_3:47933808-47933827 | Msa0644260:CDS | 40.0% | |
| AGAACCAGAATGTGTATCAG+TGG | - | chr4_3:47933815-47933834 | None:intergenic | 40.0% | |
| ACTGCTAGGCTTAGAGTGTA+TGG | + | chr4_3:47932465-47932484 | Msa0644260:CDS | 45.0% | |
| AGAGTGTATGGTCACATCGA+AGG | + | chr4_3:47932477-47932496 | Msa0644260:CDS | 45.0% | |
| !! | GGTGAAGGATAAATGGGTTG+AGG | - | chr4_3:47932600-47932619 | None:intergenic | 45.0% |
| !! | AAATTGTGCTAGCGGACTTG+TGG | + | chr4_3:47932789-47932808 | Msa0644260:intron | 45.0% |
| TGTGGTTGTGGTACGCAATA+TGG | - | chr4_3:47933511-47933530 | None:intergenic | 45.0% | |
| !!! | ACTGCAGGTAGAAGCACTTT+TGG | - | chr4_3:47933565-47933584 | None:intergenic | 45.0% |
| ! | AAAGTGCTTCTACCTGCAGT+AGG | + | chr4_3:47933565-47933584 | Msa0644260:CDS | 45.0% |
| TTGTTTCCACTGCATCCAAC+TGG | + | chr4_3:47933727-47933746 | Msa0644260:CDS | 45.0% | |
| AATATGCCAGTTGGATGCAG+TGG | - | chr4_3:47933736-47933755 | None:intergenic | 45.0% | |
| ACTGCATCCAACTGGCATAT+TGG | + | chr4_3:47933735-47933754 | Msa0644260:CDS | 45.0% | |
| CATCCAACTGGCATATTGGA+AGG | + | chr4_3:47933739-47933758 | Msa0644260:CDS | 45.0% | |
| TTCCCTTCCAATATGCCAGT+TGG | - | chr4_3:47933745-47933764 | None:intergenic | 45.0% | |
| ACTGCTAGGCTTAGAGTGTA+TGG | + | chr4_3:47932465-47932484 | Msa0644260:CDS | 45.0% | |
| AGAGTGTATGGTCACATCGA+AGG | + | chr4_3:47932477-47932496 | Msa0644260:CDS | 45.0% | |
| !! | GGTGAAGGATAAATGGGTTG+AGG | - | chr4_3:47932600-47932619 | None:intergenic | 45.0% |
| !! | AAATTGTGCTAGCGGACTTG+TGG | + | chr4_3:47932789-47932808 | Msa0644260:intron | 45.0% |
| TGTGGTTGTGGTACGCAATA+TGG | - | chr4_3:47933511-47933530 | None:intergenic | 45.0% | |
| !!! | ACTGCAGGTAGAAGCACTTT+TGG | - | chr4_3:47933565-47933584 | None:intergenic | 45.0% |
| ! | AAAGTGCTTCTACCTGCAGT+AGG | + | chr4_3:47933565-47933584 | Msa0644260:CDS | 45.0% |
| TTGTTTCCACTGCATCCAAC+TGG | + | chr4_3:47933727-47933746 | Msa0644260:CDS | 45.0% | |
| AATATGCCAGTTGGATGCAG+TGG | - | chr4_3:47933736-47933755 | None:intergenic | 45.0% | |
| ACTGCATCCAACTGGCATAT+TGG | + | chr4_3:47933735-47933754 | Msa0644260:CDS | 45.0% | |
| CATCCAACTGGCATATTGGA+AGG | + | chr4_3:47933739-47933758 | Msa0644260:CDS | 45.0% | |
| TTCCCTTCCAATATGCCAGT+TGG | - | chr4_3:47933745-47933764 | None:intergenic | 45.0% | |
| GGAAGGGAAAACAACTGACC+AGG | + | chr4_3:47933756-47933775 | Msa0644260:CDS | 50.0% | |
| GGAAGGGAAAACAACTGACC+AGG | + | chr4_3:47933756-47933775 | Msa0644260:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 47932300 | 47933927 | 47932300 | ID=Msa0644260;Name=Msa0644260 |
| chr4_3 | mRNA | 47932300 | 47933927 | 47932300 | ID=Msa0644260-mRNA-1;Parent=Msa0644260;Name=Msa0644260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|254 |
| chr4_3 | exon | 47932300 | 47932633 | 47932300 | ID=Msa0644260-mRNA-1:exon:11369;Parent=Msa0644260-mRNA-1 |
| chr4_3 | exon | 47933497 | 47933927 | 47933497 | ID=Msa0644260-mRNA-1:exon:11370;Parent=Msa0644260-mRNA-1 |
| chr4_3 | CDS | 47932300 | 47932633 | 47932300 | ID=Msa0644260-mRNA-1:cds;Parent=Msa0644260-mRNA-1 |
| chr4_3 | CDS | 47933497 | 47933927 | 47933497 | ID=Msa0644260-mRNA-1:cds;Parent=Msa0644260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
