Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645840 | XP_003606840.1 | 84.727 | 275 | 38 | 2 | 1 | 273 | 1 | 273 | 2.25e-149 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0645840 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645840 | MtrunA17_Chr4g0033941 | 84.052 | 232 | 33 | 2 | 44 | 273 | 1 | 230 | 2.03e-120 | 343 |
| Msa0645840 | MtrunA17_Chr4g0033951 | 59.512 | 205 | 63 | 9 | 1 | 202 | 1 | 188 | 5.68e-67 | 206 |
| Msa0645840 | MtrunA17_Chr1g0154161 | 32.540 | 126 | 78 | 3 | 23 | 143 | 43 | 166 | 3.82e-13 | 68.6 |
| Msa0645840 | MtrunA17_Chr1g0154041 | 30.693 | 101 | 68 | 1 | 8 | 108 | 13 | 111 | 5.45e-13 | 68.6 |
| Msa0645840 | MtrunA17_Chr1g0154211 | 33.981 | 103 | 65 | 2 | 23 | 124 | 35 | 135 | 7.30e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645840 | AT3G06220.1 | 28.696 | 115 | 78 | 2 | 9 | 123 | 8 | 118 | 1.21e-11 | 62.4 |
Find 43 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTTGGCCGCGATTAT+TGG | 0.150855 | 4_3:-51267510 | None:intergenic |
| TTCTTTGATGATTGCGAAAA+AGG | 0.192611 | 4_3:-51266579 | None:intergenic |
| AGTGATGCTTGAAGAGTTAT+TGG | 0.212786 | 4_3:+51267359 | Msa0645840:CDS |
| ATTATTCTGGTAGGCTCTTC+TGG | 0.226533 | 4_3:+51267252 | Msa0645840:CDS |
| CATCAATGTTGCTGCAGCTT+TGG | 0.244862 | 4_3:-51267766 | None:intergenic |
| AATGACATTTATCTGCAAAT+TGG | 0.269252 | 4_3:+51267309 | Msa0645840:CDS |
| TGCAGCAACAATCATGTCTA+TGG | 0.269290 | 4_3:+51267689 | Msa0645840:CDS |
| ACCAGAGATTGCTATGGATT+TGG | 0.275319 | 4_3:+51267203 | Msa0645840:CDS |
| CCAGAGATTGCTATGGATTT+GGG | 0.337772 | 4_3:+51267204 | Msa0645840:CDS |
| GAAGAATACGTATATTATTC+TGG | 0.361208 | 4_3:+51267239 | Msa0645840:CDS |
| CAAAGCTGCAGCAACATTGA+TGG | 0.380913 | 4_3:+51267767 | Msa0645840:CDS |
| CTGGTGAGAGAGTATGCTTC+AGG | 0.408630 | 4_3:+51267652 | Msa0645840:CDS |
| TAATGGGGAGAACAAGTTCC+AGG | 0.412328 | 4_3:+51267392 | Msa0645840:CDS |
| TTCTTAAAGCACTCACTCTC+AGG | 0.419431 | 4_3:-51267561 | None:intergenic |
| TGGTCTACCCCTCTTTCTCT+TGG | 0.432293 | 4_3:-51267523 | None:intergenic |
| GAGAAAATCCTGCTGGTGAG+AGG | 0.446423 | 4_3:+51267814 | Msa0645840:CDS |
| CAGTTAACTAAAATAACAAC+TGG | 0.461802 | 4_3:-51267921 | None:intergenic |
| CCCAAATCCATAGCAATCTC+TGG | 0.480915 | 4_3:-51267204 | None:intergenic |
| ACATTTATCTGCAAATTGGT+TGG | 0.488288 | 4_3:+51267313 | Msa0645840:CDS |
| ATTGTGGTTAAGAGAAATGA+TGG | 0.499727 | 4_3:+51267609 | Msa0645840:CDS |
| TCTTGTACATTCTTGAAGCA+TGG | 0.500756 | 4_3:-51267447 | None:intergenic |
| ATGCATACCCTCTCACCAGC+AGG | 0.531521 | 4_3:-51267822 | None:intergenic |
| TGGATTTGGGTGAAGAGTTG+TGG | 0.534010 | 4_3:+51267217 | Msa0645840:CDS |
| TAATCGCGGCCAAGAGAAAG+AGG | 0.543608 | 4_3:+51267514 | Msa0645840:CDS |
| ACTAAAATAACAACTGGAGC+AGG | 0.545360 | 4_3:-51267915 | None:intergenic |
| AATCGTGGCTGAGAGAAAGA+AGG | 0.556974 | 4_3:+51267875 | Msa0645840:CDS |
| AGGCTTGAACATCAACCGCC+TGG | 0.566829 | 4_3:+51266601 | Msa0645840:CDS |
| AGGCTCTTCTGGTGAGAAGT+GGG | 0.570363 | 4_3:+51267263 | Msa0645840:CDS |
| AAGCATACTCTCTCACCAGC+AGG | 0.573273 | 4_3:-51267648 | None:intergenic |
| AATACGTATATTATTCTGGT+AGG | 0.576390 | 4_3:+51267243 | Msa0645840:CDS |
| TGCAGCAGCTCCAATAATCG+CGG | 0.576668 | 4_3:+51267500 | Msa0645840:CDS |
| GCAGCAACAATCATGTCTAT+GGG | 0.585892 | 4_3:+51267690 | Msa0645840:CDS |
| TAGGCTCTTCTGGTGAGAAG+TGG | 0.591531 | 4_3:+51267262 | Msa0645840:CDS |
| AGAAAATCCTGCTGGTGAGA+GGG | 0.595818 | 4_3:+51267815 | Msa0645840:CDS |
| ATTGATGGCTGCGATAAACA+AGG | 0.598401 | 4_3:+51267782 | Msa0645840:CDS |
| AGAACAAGAGAAAATCCTGC+TGG | 0.600152 | 4_3:+51267807 | Msa0645840:CDS |
| AGTACCACCAGAGATTGCTA+TGG | 0.612194 | 4_3:+51267197 | Msa0645840:CDS |
| AATCGCGGCCAAGAGAAAGA+GGG | 0.619676 | 4_3:+51267515 | Msa0645840:CDS |
| ATCGTGGCTGAGAGAAAGAA+GGG | 0.634544 | 4_3:+51267876 | Msa0645840:CDS |
| ATCGCGGCCAAGAGAAAGAG+GGG | 0.679157 | 4_3:+51267516 | Msa0645840:CDS |
| AAAATCTGCAGAAACAATCG+TGG | 0.680787 | 4_3:+51267860 | Msa0645840:CDS |
| TTGATGGCTGCGATAAACAA+GGG | 0.688503 | 4_3:+51267783 | Msa0645840:CDS |
| AAATCCATAGCAATCTCTGG+TGG | 0.701166 | 4_3:-51267201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAGAAATACTTTGTT+TGG | + | chr4_3:51266707-51266726 | Msa0645840:intron | 15.0% |
| !! | ATAATAAGAAATACTTTGTT+TGG | + | chr4_3:51266707-51266726 | Msa0645840:intron | 15.0% |
| !!! | TTTTAGTTATACATAGACAT+AGG | + | chr4_3:51266913-51266932 | Msa0645840:intron | 20.0% |
| !!! | TTATTGGTTTTCACATATAA+TGG | + | chr4_3:51267375-51267394 | Msa0645840:CDS | 20.0% |
| !!! | TATTGGTTTTCACATATAAT+GGG | + | chr4_3:51267376-51267395 | Msa0645840:CDS | 20.0% |
| !!! | TTTTAGTTATACATAGACAT+AGG | + | chr4_3:51266913-51266932 | Msa0645840:intron | 20.0% |
| !!! | TTATTGGTTTTCACATATAA+TGG | + | chr4_3:51267375-51267394 | Msa0645840:CDS | 20.0% |
| !!! | TATTGGTTTTCACATATAAT+GGG | + | chr4_3:51267376-51267395 | Msa0645840:CDS | 20.0% |
| ! | AGTACGAATAAATTATTACC+AGG | - | chr4_3:51266622-51266641 | None:intergenic | 25.0% |
| ! | GATGATGACAACTAATTTAT+AGG | + | chr4_3:51266735-51266754 | Msa0645840:intron | 25.0% |
| !!! | GGAAAAGTGAGTTTTTTTAA+AGG | + | chr4_3:51266756-51266775 | Msa0645840:intron | 25.0% |
| ! | TTATCTACTAGAGACAAATT+GGG | + | chr4_3:51266874-51266893 | Msa0645840:intron | 25.0% |
| ! | GAAGAATACGTATATTATTC+TGG | + | chr4_3:51267239-51267258 | Msa0645840:CDS | 25.0% |
| ! | AATACGTATATTATTCTGGT+AGG | + | chr4_3:51267243-51267262 | Msa0645840:CDS | 25.0% |
| !!! | GAAGTGAGTATTTTGAATAA+AGG | + | chr4_3:51267285-51267304 | Msa0645840:CDS | 25.0% |
| ! | AATGACATTTATCTGCAAAT+TGG | + | chr4_3:51267309-51267328 | Msa0645840:CDS | 25.0% |
| !!! | ATTGGTTTTCACATATAATG+GGG | + | chr4_3:51267377-51267396 | Msa0645840:CDS | 25.0% |
| !!! | GTACAAATTTTTGGTAAGAA+TGG | + | chr4_3:51267414-51267433 | Msa0645840:CDS | 25.0% |
| !!! | AATTTTTGGTAAGAATGGAT+TGG | + | chr4_3:51267419-51267438 | Msa0645840:CDS | 25.0% |
| ! | CAGTTAACTAAAATAACAAC+TGG | - | chr4_3:51267924-51267943 | None:intergenic | 25.0% |
| ! | AGTACGAATAAATTATTACC+AGG | - | chr4_3:51266622-51266641 | None:intergenic | 25.0% |
| ! | GATGATGACAACTAATTTAT+AGG | + | chr4_3:51266735-51266754 | Msa0645840:intron | 25.0% |
| !!! | GGAAAAGTGAGTTTTTTTAA+AGG | + | chr4_3:51266756-51266775 | Msa0645840:intron | 25.0% |
| ! | TTATCTACTAGAGACAAATT+GGG | + | chr4_3:51266874-51266893 | Msa0645840:intron | 25.0% |
| ! | GAAGAATACGTATATTATTC+TGG | + | chr4_3:51267239-51267258 | Msa0645840:CDS | 25.0% |
| ! | AATACGTATATTATTCTGGT+AGG | + | chr4_3:51267243-51267262 | Msa0645840:CDS | 25.0% |
| !!! | GAAGTGAGTATTTTGAATAA+AGG | + | chr4_3:51267285-51267304 | Msa0645840:CDS | 25.0% |
| ! | AATGACATTTATCTGCAAAT+TGG | + | chr4_3:51267309-51267328 | Msa0645840:CDS | 25.0% |
| !!! | ATTGGTTTTCACATATAATG+GGG | + | chr4_3:51267377-51267396 | Msa0645840:CDS | 25.0% |
| !!! | GTACAAATTTTTGGTAAGAA+TGG | + | chr4_3:51267414-51267433 | Msa0645840:CDS | 25.0% |
| !!! | AATTTTTGGTAAGAATGGAT+TGG | + | chr4_3:51267419-51267438 | Msa0645840:CDS | 25.0% |
| ! | CAGTTAACTAAAATAACAAC+TGG | - | chr4_3:51267924-51267943 | None:intergenic | 25.0% |
| ! | TTCTTTGATGATTGCGAAAA+AGG | - | chr4_3:51266582-51266601 | None:intergenic | 30.0% |
| ! | TTTTTCGCAATCATCAAAGA+AGG | + | chr4_3:51266581-51266600 | Msa0645840:CDS | 30.0% |
| ACGAATAAATTATTACCAGG+CGG | - | chr4_3:51266619-51266638 | None:intergenic | 30.0% | |
| TTTGTCTCTAGTAGATAACT+CGG | - | chr4_3:51266872-51266891 | None:intergenic | 30.0% | |
| GTTATCTACTAGAGACAAAT+TGG | + | chr4_3:51266873-51266892 | Msa0645840:intron | 30.0% | |
| AACAGAAAAATTACCAAGCT+TGG | - | chr4_3:51267024-51267043 | None:intergenic | 30.0% | |
| TTAGACTATTTGATCTCGAT+TGG | + | chr4_3:51267043-51267062 | Msa0645840:intron | 30.0% | |
| !!! | GTCAAGCTACTATGTTTTTT+TGG | + | chr4_3:51267159-51267178 | Msa0645840:intron | 30.0% |
| ACATTTATCTGCAAATTGGT+TGG | + | chr4_3:51267313-51267332 | Msa0645840:CDS | 30.0% | |
| ! | AAGTTCCAGGTACAAATTTT+TGG | + | chr4_3:51267405-51267424 | Msa0645840:CDS | 30.0% |
| TCTTACCAAAAATTTGTACC+TGG | - | chr4_3:51267413-51267432 | None:intergenic | 30.0% | |
| TGAAGTTGCAGAAAAAATTG+TGG | + | chr4_3:51267593-51267612 | Msa0645840:CDS | 30.0% | |
| ATTGTGGTTAAGAGAAATGA+TGG | + | chr4_3:51267609-51267628 | Msa0645840:CDS | 30.0% | |
| !!! | TGACGAACATGATTTTTTCT+TGG | - | chr4_3:51267720-51267739 | None:intergenic | 30.0% |
| ! | TTCTTTGATGATTGCGAAAA+AGG | - | chr4_3:51266582-51266601 | None:intergenic | 30.0% |
| ! | TTTTTCGCAATCATCAAAGA+AGG | + | chr4_3:51266581-51266600 | Msa0645840:CDS | 30.0% |
| ACGAATAAATTATTACCAGG+CGG | - | chr4_3:51266619-51266638 | None:intergenic | 30.0% | |
| TTTGTCTCTAGTAGATAACT+CGG | - | chr4_3:51266872-51266891 | None:intergenic | 30.0% | |
| GTTATCTACTAGAGACAAAT+TGG | + | chr4_3:51266873-51266892 | Msa0645840:intron | 30.0% | |
| AACAGAAAAATTACCAAGCT+TGG | - | chr4_3:51267024-51267043 | None:intergenic | 30.0% | |
| TTAGACTATTTGATCTCGAT+TGG | + | chr4_3:51267043-51267062 | Msa0645840:intron | 30.0% | |
| !!! | GTCAAGCTACTATGTTTTTT+TGG | + | chr4_3:51267159-51267178 | Msa0645840:intron | 30.0% |
| ACATTTATCTGCAAATTGGT+TGG | + | chr4_3:51267313-51267332 | Msa0645840:CDS | 30.0% | |
| ! | AAGTTCCAGGTACAAATTTT+TGG | + | chr4_3:51267405-51267424 | Msa0645840:CDS | 30.0% |
| TCTTACCAAAAATTTGTACC+TGG | - | chr4_3:51267413-51267432 | None:intergenic | 30.0% | |
| TGAAGTTGCAGAAAAAATTG+TGG | + | chr4_3:51267593-51267612 | Msa0645840:CDS | 30.0% | |
| ATTGTGGTTAAGAGAAATGA+TGG | + | chr4_3:51267609-51267628 | Msa0645840:CDS | 30.0% | |
| !!! | TGACGAACATGATTTTTTCT+TGG | - | chr4_3:51267720-51267739 | None:intergenic | 30.0% |
| ! | TTGATGATTGCGAAAAAGGA+TGG | - | chr4_3:51266578-51266597 | None:intergenic | 35.0% |
| AAAATTACCAAGCTTGGATC+TGG | - | chr4_3:51267018-51267037 | None:intergenic | 35.0% | |
| ACTATTTGATCTCGATTGGA+AGG | + | chr4_3:51267047-51267066 | Msa0645840:intron | 35.0% | |
| ACATGTTATGCATATGAAGC+TGG | - | chr4_3:51267110-51267129 | None:intergenic | 35.0% | |
| AGTGATGCTTGAAGAGTTAT+TGG | + | chr4_3:51267359-51267378 | Msa0645840:CDS | 35.0% | |
| TCTTGTACATTCTTGAAGCA+TGG | - | chr4_3:51267450-51267469 | None:intergenic | 35.0% | |
| ! | TCAGGAGAAAGAACTTTTCT+TGG | - | chr4_3:51267546-51267565 | None:intergenic | 35.0% |
| AAAATCTGCAGAAACAATCG+TGG | + | chr4_3:51267860-51267879 | Msa0645840:CDS | 35.0% | |
| ACTAAAATAACAACTGGAGC+AGG | - | chr4_3:51267918-51267937 | None:intergenic | 35.0% | |
| ! | TTGATGATTGCGAAAAAGGA+TGG | - | chr4_3:51266578-51266597 | None:intergenic | 35.0% |
| AAAATTACCAAGCTTGGATC+TGG | - | chr4_3:51267018-51267037 | None:intergenic | 35.0% | |
| ACTATTTGATCTCGATTGGA+AGG | + | chr4_3:51267047-51267066 | Msa0645840:intron | 35.0% | |
| ACATGTTATGCATATGAAGC+TGG | - | chr4_3:51267110-51267129 | None:intergenic | 35.0% | |
| AGTGATGCTTGAAGAGTTAT+TGG | + | chr4_3:51267359-51267378 | Msa0645840:CDS | 35.0% | |
| TCTTGTACATTCTTGAAGCA+TGG | - | chr4_3:51267450-51267469 | None:intergenic | 35.0% | |
| ! | TCAGGAGAAAGAACTTTTCT+TGG | - | chr4_3:51267546-51267565 | None:intergenic | 35.0% |
| AAAATCTGCAGAAACAATCG+TGG | + | chr4_3:51267860-51267879 | Msa0645840:CDS | 35.0% | |
| ACTAAAATAACAACTGGAGC+AGG | - | chr4_3:51267918-51267937 | None:intergenic | 35.0% | |
| ! | CGAAAAAGGATGGTTTGTCT+TGG | - | chr4_3:51266568-51266587 | None:intergenic | 40.0% |
| GCATGAGATGATGTTCATGT+GGG | - | chr4_3:51266662-51266681 | None:intergenic | 40.0% | |
| TGCATGAGATGATGTTCATG+TGG | - | chr4_3:51266663-51266682 | None:intergenic | 40.0% | |
| ! | ATAACTCGGCTTTTGAGCTA+AGG | - | chr4_3:51266858-51266877 | None:intergenic | 40.0% |
| ATGCACGCATTCATGAAGTT+TGG | + | chr4_3:51266961-51266980 | Msa0645840:intron | 40.0% | |
| TGATCTCGATTGGAAGGTTA+CGG | + | chr4_3:51267053-51267072 | Msa0645840:intron | 40.0% | |
| AAATCCATAGCAATCTCTGG+TGG | - | chr4_3:51267204-51267223 | None:intergenic | 40.0% | |
| ACCAGAGATTGCTATGGATT+TGG | + | chr4_3:51267203-51267222 | Msa0645840:CDS | 40.0% | |
| CCAGAGATTGCTATGGATTT+GGG | + | chr4_3:51267204-51267223 | Msa0645840:CDS | 40.0% | |
| ATTATTCTGGTAGGCTCTTC+TGG | + | chr4_3:51267252-51267271 | Msa0645840:CDS | 40.0% | |
| ! | TTCTTAAAGCACTCACTCTC+AGG | - | chr4_3:51267564-51267583 | None:intergenic | 40.0% |
| AGAACAAGAAAAAGTCCTGC+TGG | + | chr4_3:51267633-51267652 | Msa0645840:CDS | 40.0% | |
| TGCAGCAACAATCATGTCTA+TGG | + | chr4_3:51267689-51267708 | Msa0645840:CDS | 40.0% | |
| GCAGCAACAATCATGTCTAT+GGG | + | chr4_3:51267690-51267709 | Msa0645840:CDS | 40.0% | |
| ! | ATTGATGGCTGCGATAAACA+AGG | + | chr4_3:51267782-51267801 | Msa0645840:CDS | 40.0% |
| ! | TTGATGGCTGCGATAAACAA+GGG | + | chr4_3:51267783-51267802 | Msa0645840:CDS | 40.0% |
| AGAACAAGAGAAAATCCTGC+TGG | + | chr4_3:51267807-51267826 | Msa0645840:CDS | 40.0% | |
| ! | ACTGGAGCAGGATATTTTCT+TGG | - | chr4_3:51267906-51267925 | None:intergenic | 40.0% |
| ! | CGAAAAAGGATGGTTTGTCT+TGG | - | chr4_3:51266568-51266587 | None:intergenic | 40.0% |
| GCATGAGATGATGTTCATGT+GGG | - | chr4_3:51266662-51266681 | None:intergenic | 40.0% | |
| TGCATGAGATGATGTTCATG+TGG | - | chr4_3:51266663-51266682 | None:intergenic | 40.0% | |
| ! | ATAACTCGGCTTTTGAGCTA+AGG | - | chr4_3:51266858-51266877 | None:intergenic | 40.0% |
| ATGCACGCATTCATGAAGTT+TGG | + | chr4_3:51266961-51266980 | Msa0645840:intron | 40.0% | |
| TGATCTCGATTGGAAGGTTA+CGG | + | chr4_3:51267053-51267072 | Msa0645840:intron | 40.0% | |
| AAATCCATAGCAATCTCTGG+TGG | - | chr4_3:51267204-51267223 | None:intergenic | 40.0% | |
| ACCAGAGATTGCTATGGATT+TGG | + | chr4_3:51267203-51267222 | Msa0645840:CDS | 40.0% | |
| CCAGAGATTGCTATGGATTT+GGG | + | chr4_3:51267204-51267223 | Msa0645840:CDS | 40.0% | |
| ATTATTCTGGTAGGCTCTTC+TGG | + | chr4_3:51267252-51267271 | Msa0645840:CDS | 40.0% | |
| ! | TTCTTAAAGCACTCACTCTC+AGG | - | chr4_3:51267564-51267583 | None:intergenic | 40.0% |
| AGAACAAGAAAAAGTCCTGC+TGG | + | chr4_3:51267633-51267652 | Msa0645840:CDS | 40.0% | |
| TGCAGCAACAATCATGTCTA+TGG | + | chr4_3:51267689-51267708 | Msa0645840:CDS | 40.0% | |
| GCAGCAACAATCATGTCTAT+GGG | + | chr4_3:51267690-51267709 | Msa0645840:CDS | 40.0% | |
| ! | ATTGATGGCTGCGATAAACA+AGG | + | chr4_3:51267782-51267801 | Msa0645840:CDS | 40.0% |
| ! | TTGATGGCTGCGATAAACAA+GGG | + | chr4_3:51267783-51267802 | Msa0645840:CDS | 40.0% |
| AGAACAAGAGAAAATCCTGC+TGG | + | chr4_3:51267807-51267826 | Msa0645840:CDS | 40.0% | |
| ! | ACTGGAGCAGGATATTTTCT+TGG | - | chr4_3:51267906-51267925 | None:intergenic | 40.0% |
| ATAGGACCCTGTATTCCCTT+TGG | + | chr4_3:51266931-51266950 | Msa0645840:intron | 45.0% | |
| CAGTGACCAAAGGGAATACA+GGG | - | chr4_3:51266940-51266959 | None:intergenic | 45.0% | |
| TCAGTGACCAAAGGGAATAC+AGG | - | chr4_3:51266941-51266960 | None:intergenic | 45.0% | |
| ATCCATGACCGTCCGAAAAA+TGG | + | chr4_3:51266986-51267005 | Msa0645840:intron | 45.0% | |
| TCCATGACCGTCCGAAAAAT+GGG | + | chr4_3:51266987-51267006 | Msa0645840:intron | 45.0% | |
| !! | ATCTGGACCACCCCATTTTT+CGG | - | chr4_3:51267001-51267020 | None:intergenic | 45.0% |
| TGCAAGCATTCACAAAGCCA+GGG | - | chr4_3:51267082-51267101 | None:intergenic | 45.0% | |
| !! | TGGCTTTGTGAATGCTTGCA+GGG | + | chr4_3:51267082-51267101 | Msa0645840:intron | 45.0% |
| AGTACCACCAGAGATTGCTA+TGG | + | chr4_3:51267197-51267216 | Msa0645840:CDS | 45.0% | |
| CCCAAATCCATAGCAATCTC+TGG | - | chr4_3:51267207-51267226 | None:intergenic | 45.0% | |
| TGGATTTGGGTGAAGAGTTG+TGG | + | chr4_3:51267217-51267236 | Msa0645840:CDS | 45.0% | |
| TAATGGGGAGAACAAGTTCC+AGG | + | chr4_3:51267392-51267411 | Msa0645840:CDS | 45.0% | |
| TTTCTCTTGGCCGCGATTAT+TGG | - | chr4_3:51267513-51267532 | None:intergenic | 45.0% | |
| CATCAATGTTGCTGCAGCTT+TGG | - | chr4_3:51267769-51267788 | None:intergenic | 45.0% | |
| CAAAGCTGCAGCAACATTGA+TGG | + | chr4_3:51267767-51267786 | Msa0645840:CDS | 45.0% | |
| AGAAAATCCTGCTGGTGAGA+GGG | + | chr4_3:51267815-51267834 | Msa0645840:CDS | 45.0% | |
| AATCGTGGCTGAGAGAAAGA+AGG | + | chr4_3:51267875-51267894 | Msa0645840:CDS | 45.0% | |
| ATCGTGGCTGAGAGAAAGAA+GGG | + | chr4_3:51267876-51267895 | Msa0645840:CDS | 45.0% | |
| ATAGGACCCTGTATTCCCTT+TGG | + | chr4_3:51266931-51266950 | Msa0645840:intron | 45.0% | |
| CAGTGACCAAAGGGAATACA+GGG | - | chr4_3:51266940-51266959 | None:intergenic | 45.0% | |
| TCAGTGACCAAAGGGAATAC+AGG | - | chr4_3:51266941-51266960 | None:intergenic | 45.0% | |
| ATCCATGACCGTCCGAAAAA+TGG | + | chr4_3:51266986-51267005 | Msa0645840:intron | 45.0% | |
| TCCATGACCGTCCGAAAAAT+GGG | + | chr4_3:51266987-51267006 | Msa0645840:intron | 45.0% | |
| !! | ATCTGGACCACCCCATTTTT+CGG | - | chr4_3:51267001-51267020 | None:intergenic | 45.0% |
| TGCAAGCATTCACAAAGCCA+GGG | - | chr4_3:51267082-51267101 | None:intergenic | 45.0% | |
| !! | TGGCTTTGTGAATGCTTGCA+GGG | + | chr4_3:51267082-51267101 | Msa0645840:intron | 45.0% |
| AGTACCACCAGAGATTGCTA+TGG | + | chr4_3:51267197-51267216 | Msa0645840:CDS | 45.0% | |
| CCCAAATCCATAGCAATCTC+TGG | - | chr4_3:51267207-51267226 | None:intergenic | 45.0% | |
| TGGATTTGGGTGAAGAGTTG+TGG | + | chr4_3:51267217-51267236 | Msa0645840:CDS | 45.0% | |
| TAATGGGGAGAACAAGTTCC+AGG | + | chr4_3:51267392-51267411 | Msa0645840:CDS | 45.0% | |
| TTTCTCTTGGCCGCGATTAT+TGG | - | chr4_3:51267513-51267532 | None:intergenic | 45.0% | |
| CATCAATGTTGCTGCAGCTT+TGG | - | chr4_3:51267769-51267788 | None:intergenic | 45.0% | |
| CAAAGCTGCAGCAACATTGA+TGG | + | chr4_3:51267767-51267786 | Msa0645840:CDS | 45.0% | |
| AGAAAATCCTGCTGGTGAGA+GGG | + | chr4_3:51267815-51267834 | Msa0645840:CDS | 45.0% | |
| AATCGTGGCTGAGAGAAAGA+AGG | + | chr4_3:51267875-51267894 | Msa0645840:CDS | 45.0% | |
| ATCGTGGCTGAGAGAAAGAA+GGG | + | chr4_3:51267876-51267895 | Msa0645840:CDS | 45.0% | |
| GCGTGCATTCAGTGACCAAA+GGG | - | chr4_3:51266949-51266968 | None:intergenic | 50.0% | |
| TGCGTGCATTCAGTGACCAA+AGG | - | chr4_3:51266950-51266969 | None:intergenic | 50.0% | |
| CCATGACCGTCCGAAAAATG+GGG | + | chr4_3:51266988-51267007 | Msa0645840:intron | 50.0% | |
| GCAAGCATTCACAAAGCCAG+GGG | - | chr4_3:51267081-51267100 | None:intergenic | 50.0% | |
| CTGCAAGCATTCACAAAGCC+AGG | - | chr4_3:51267083-51267102 | None:intergenic | 50.0% | |
| !! | CTGGCTTTGTGAATGCTTGC+AGG | + | chr4_3:51267081-51267100 | Msa0645840:intron | 50.0% |
| TAGGCTCTTCTGGTGAGAAG+TGG | + | chr4_3:51267262-51267281 | Msa0645840:CDS | 50.0% | |
| AGGCTCTTCTGGTGAGAAGT+GGG | + | chr4_3:51267263-51267282 | Msa0645840:CDS | 50.0% | |
| TGCAGCAGCTCCAATAATCG+CGG | + | chr4_3:51267500-51267519 | Msa0645840:CDS | 50.0% | |
| TAATCGCGGCCAAGAGAAAG+AGG | + | chr4_3:51267514-51267533 | Msa0645840:CDS | 50.0% | |
| AATCGCGGCCAAGAGAAAGA+GGG | + | chr4_3:51267515-51267534 | Msa0645840:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_3:51267526-51267545 | None:intergenic | 50.0% | |
| AAGCATACTCTCTCACCAGC+AGG | - | chr4_3:51267651-51267670 | None:intergenic | 50.0% | |
| ! | CTGGTGAGAGAGTATGCTTC+AGG | + | chr4_3:51267652-51267671 | Msa0645840:CDS | 50.0% |
| GAGAAAATCCTGCTGGTGAG+AGG | + | chr4_3:51267814-51267833 | Msa0645840:CDS | 50.0% | |
| GCGTGCATTCAGTGACCAAA+GGG | - | chr4_3:51266949-51266968 | None:intergenic | 50.0% | |
| TGCGTGCATTCAGTGACCAA+AGG | - | chr4_3:51266950-51266969 | None:intergenic | 50.0% | |
| CCATGACCGTCCGAAAAATG+GGG | + | chr4_3:51266988-51267007 | Msa0645840:intron | 50.0% | |
| GCAAGCATTCACAAAGCCAG+GGG | - | chr4_3:51267081-51267100 | None:intergenic | 50.0% | |
| CTGCAAGCATTCACAAAGCC+AGG | - | chr4_3:51267083-51267102 | None:intergenic | 50.0% | |
| !! | CTGGCTTTGTGAATGCTTGC+AGG | + | chr4_3:51267081-51267100 | Msa0645840:intron | 50.0% |
| TAGGCTCTTCTGGTGAGAAG+TGG | + | chr4_3:51267262-51267281 | Msa0645840:CDS | 50.0% | |
| AGGCTCTTCTGGTGAGAAGT+GGG | + | chr4_3:51267263-51267282 | Msa0645840:CDS | 50.0% | |
| TGCAGCAGCTCCAATAATCG+CGG | + | chr4_3:51267500-51267519 | Msa0645840:CDS | 50.0% | |
| TAATCGCGGCCAAGAGAAAG+AGG | + | chr4_3:51267514-51267533 | Msa0645840:CDS | 50.0% | |
| AATCGCGGCCAAGAGAAAGA+GGG | + | chr4_3:51267515-51267534 | Msa0645840:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_3:51267526-51267545 | None:intergenic | 50.0% | |
| AAGCATACTCTCTCACCAGC+AGG | - | chr4_3:51267651-51267670 | None:intergenic | 50.0% | |
| ! | CTGGTGAGAGAGTATGCTTC+AGG | + | chr4_3:51267652-51267671 | Msa0645840:CDS | 50.0% |
| GAGAAAATCCTGCTGGTGAG+AGG | + | chr4_3:51267814-51267833 | Msa0645840:CDS | 50.0% | |
| AGGCTTGAACATCAACCGCC+TGG | + | chr4_3:51266601-51266620 | Msa0645840:CDS | 55.0% | |
| !! | CCCCATTTTTCGGACGGTCA+TGG | - | chr4_3:51266991-51267010 | None:intergenic | 55.0% |
| TGACCGTCCGAAAAATGGGG+TGG | + | chr4_3:51266991-51267010 | Msa0645840:intron | 55.0% | |
| !! | GGACCACCCCATTTTTCGGA+CGG | - | chr4_3:51266997-51267016 | None:intergenic | 55.0% |
| TTGGAAGGTTACGGATCCCC+TGG | + | chr4_3:51267062-51267081 | Msa0645840:intron | 55.0% | |
| ATCGCGGCCAAGAGAAAGAG+GGG | + | chr4_3:51267516-51267535 | Msa0645840:CDS | 55.0% | |
| ATGCATACCCTCTCACCAGC+AGG | - | chr4_3:51267825-51267844 | None:intergenic | 55.0% | |
| AGGCTTGAACATCAACCGCC+TGG | + | chr4_3:51266601-51266620 | Msa0645840:CDS | 55.0% | |
| !! | CCCCATTTTTCGGACGGTCA+TGG | - | chr4_3:51266991-51267010 | None:intergenic | 55.0% |
| TGACCGTCCGAAAAATGGGG+TGG | + | chr4_3:51266991-51267010 | Msa0645840:intron | 55.0% | |
| !! | GGACCACCCCATTTTTCGGA+CGG | - | chr4_3:51266997-51267016 | None:intergenic | 55.0% |
| TTGGAAGGTTACGGATCCCC+TGG | + | chr4_3:51267062-51267081 | Msa0645840:intron | 55.0% | |
| ATCGCGGCCAAGAGAAAGAG+GGG | + | chr4_3:51267516-51267535 | Msa0645840:CDS | 55.0% | |
| ATGCATACCCTCTCACCAGC+AGG | - | chr4_3:51267825-51267844 | None:intergenic | 55.0% | |
| GGGTGGTCCAGATCCAAGCT+TGG | + | chr4_3:51267008-51267027 | Msa0645840:intron | 60.0% | |
| GGGTGGTCCAGATCCAAGCT+TGG | + | chr4_3:51267008-51267027 | Msa0645840:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 51266551 | 51267944 | 51266551 | ID=Msa0645840;Name=Msa0645840 |
| chr4_3 | mRNA | 51266551 | 51267944 | 51266551 | ID=Msa0645840-mRNA-1;Parent=Msa0645840;Name=Msa0645840-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|2|0|273 |
| chr4_3 | exon | 51266551 | 51266622 | 51266551 | ID=Msa0645840-mRNA-1:exon:12390;Parent=Msa0645840-mRNA-1 |
| chr4_3 | exon | 51267195 | 51267944 | 51267195 | ID=Msa0645840-mRNA-1:exon:12391;Parent=Msa0645840-mRNA-1 |
| chr4_3 | CDS | 51266551 | 51266622 | 51266551 | ID=Msa0645840-mRNA-1:cds;Parent=Msa0645840-mRNA-1 |
| chr4_3 | CDS | 51267195 | 51267944 | 51267195 | ID=Msa0645840-mRNA-1:cds;Parent=Msa0645840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
